RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18207
(293 letters)
>gnl|CDD|240469 cd12889, SPRY_PRY_TRIM67_9, PRY/SPRY domain in tripartite
motif-containing proteins, TRIM9 and TRIM67. This
domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of TRIM9 proteins. TRIM9 protein is
expressed mainly in the cerebral cortex, and functions
as an E3 ubiquitin ligase. It has been shown that TRIM9
is localized to the neurons in the normal human brain
and its immunoreactivity in affected brain areas in
Parkinson's disease and dementia with Lewy bodies is
severely decreased, possibly playing an important role
in the regulation of neuronal function and participating
in pathological process of Lewy body disease through its
ligase. TRIM67 negatively regulates Ras activity via
degradation of 80K-H , leading to neural
differentiation, including neuritogenesis.
Length = 172
Score = 168 bits (427), Expect = 4e-52
Identities = 79/169 (46%), Positives = 96/169 (56%), Gaps = 16/169 (9%)
Query: 129 VAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
VAWF DP PD+ S ++ TVTC YE RV L VGFS+G HYWE IDRYD DP
Sbjct: 7 VAWFQFDPSSGHPDIILSNDNLTVTCSSYEDRVVLGSVGFSRGVHYWEVTIDRYDGHPDP 66
Query: 189 SFGIARLDVARDEMLVKHRDLFAVLATCSR--------YSRLVRG---IPDLFAVFATCS 237
+FG+AR DVA+D+ML K +A+ +R +S G + + V
Sbjct: 67 AFGVARADVAKDKMLGKDDKGWAMYIDSNRSWFLHNNEHSNRTEGGITVGSVIGVLLDLD 126
Query: 238 R--YSRLVRGIPDLFAGPIAFHNLYGVFYPAVSLNRGVTVTLHTGLEVP 284
R S V P GP+AF NL G+FYPA SLNR V VTLHTGLE+P
Sbjct: 127 RGTLSFYVNDEPQ---GPVAFTNLPGLFYPAFSLNRNVQVTLHTGLEIP 172
Score = 115 bits (289), Expect = 2e-31
Identities = 40/58 (68%), Positives = 46/58 (79%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
GKDDK W+MYID RSWF+H + H RTEGGI+ GS +GVLLDLDR L F+VNDEPQ
Sbjct: 82 GKDDKGWAMYIDSNRSWFLHNNEHSNRTEGGITVGSVIGVLLDLDRGTLSFYVNDEPQ 139
Score = 53.4 bits (129), Expect = 9e-09
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 101 EFVIDRYDSDTDPSFGIARLDVARDEML 128
E IDRYD DP+FG+AR DVA+D+ML
Sbjct: 54 EVTIDRYDGHPDPAFGVARADVAKDKML 81
>gnl|CDD|240492 cd13734, SPRY_PRY_C-I, PRY/SPRY domain in tripartite
motif-containing proteins 1, 9, 18, 36, 46, 67,76
(TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67, TRIM76).
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several Class I TRIM proteins,
including TRIM1, TRIM9, TRIM18, TRIM36, TRIM46, TRIM67
and TRIM76. TRIM1 (also known as MID2) and its close
homolog, TRIM18 (also known as MID1), both contain a
B30.2-like domain at their C-terminus and a single
fibronectin type III (FN3) motif between it and their
N-terminal RBCC domain. Their coiled-coil motifs mediate
both homo- and heterodimerization, a prerequisite for
association of the rapamycin-sensitive PP2A regulatory
subunit Alpha 4 with microtubules. Mutations in TRIM18
have shown to cause Opitz syndrome, a disorder causing
congenital anomalies such as cleft lip and palate as
well as heart defects. TRIM9 is expressed mainly in the
cerebral cortex, and functions as an E3 ubiquitin
ligase. Its immunoreactivity is severely decreased in
affected brain areas in Parkinson's disease and dementia
with Lewy bodies, possibly playing an important role in
the regulation of neuronal function and participating in
pathological process of Lewy body disease through its
ligase. TRIM36 interacts with centromere protein-H, one
of the kinetochore proteins and possibly associates with
chromosome segregation; an excess of TRIM36 may cause
chromosomal instability. TRIM46 has not yet been
characterized. TRIM67 negatively regulates Ras activity
via degradation of 80K-H, leading to neural
differentiation, including neuritogenesis. TRIM76 (also
known as cardiomyopathy-associated protein 5 or CMYA5)
is a muscle-specific member of the TRIM superfamily, but
lacks the RING domain. It is possibly involved in
protein kinase A signaling as well as vesicular
trafficking. It has also been implicated in Duchenne
muscular dystrophy and cardiac disease.
Length = 169
Score = 48.4 bits (116), Expect = 4e-07
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYE------------HRVALSVVG---FSKGAHYWE 176
F +DP + L S ++TTV D + SV+G S G HYWE
Sbjct: 1 FKLDPKTAHRKLRLSNDNTTVEYDPGGSKLSHVDVPERFFTGSYSVLGDTAISSGRHYWE 60
Query: 177 FVIDRYDSDTDPSFGIARLDVARDEML 203
+DR T G+A V RDE L
Sbjct: 61 VSVDRS---TSYRVGVAYKSVPRDEDL 84
Score = 47.3 bits (113), Expect = 1e-06
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFF 63
GK+ +W + R H T +GVLLD DR L F+
Sbjct: 85 GKNSTSWCLRRTNNRYSARHDGKVVDLTVTP--HPRRIGVLLDYDRGTLSFY 134
>gnl|CDD|240451 cd11709, SPRY, SPRY domain. SPRY domains, first identified in
the SP1A kinase of Dictyostelium and rabbit Ryanodine
receptor (hence the name), are homologous to B30.2.
SPRY domains have been identified in at least 11
protein families, covering a wide range of functions,
including regulation of cytokine signaling (SOCS), RNA
metabolism (DDX1 and hnRNP), immunity to retroviruses
(TRIM5alpha), intracellular calcium release (ryanodine
receptors or RyR) and regulatory and developmental
processes (HERC1 and Ash2L). B30.2 also contains
residues in the N-terminus that form a distinct PRY
domain structure; i.e. B30.2 domain consists of PRY and
SPRY subdomains. B30.2 domains comprise the C-terminus
of three protein families: BTNs (receptor glycoproteins
of immunoglobulin superfamily); several TRIM proteins
(composed of RING/B-box/coiled-coil or RBCC core);
Stonutoxin (secreted poisonous protein of the stonefish
Synanceia horrida). While SPRY domains are
evolutionarily ancient, B30.2 domains are a more recent
adaptation where the SPRY/PRY combination is a possible
component of immune defense. Mutations found in the
SPRY-containing proteins have shown to cause
Mediterranean fever and Opitz syndrome.
Length = 118
Score = 41.2 bits (97), Expect = 7e-05
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
G D+ +W + R + G VG LLDLD L F +N
Sbjct: 35 GDDEGSWGFDGSRLRKGHGG---SSEPGGRPWKSGDVVGCLLDLDAGTLSFSLNGVDL 89
>gnl|CDD|240477 cd12897, SPRY_PRY_TRIM50_62_72, PRY/SPRY domain in tripartite
motif-binding (TRIM) proteins TRIM50, TRIM62 and TRIM72.
This domain, consisting of the distinct N-terminal PRY
subdomain followed by the SPRY subdomain, is found at
the C-terminus of several TRIM proteins, including
TRIM72, TRIM62 and TRIM50. TRIM72 (also known as MG53)
has been shown to perform a critical function in
membrane repair following acute muscle injury by
nucleating the assembly of the repair machinery at
injury sites. It is expressed specifically in skeletal
muscle and heart, and tethered to the plasma membrane
and cytoplasmic vesicles via its interaction with
phosphatidylserine. TRIM62 is involved in the
morphogenesis of the mammary gland; loss of TRIM62 gene
expression in breast is associated with increased risk
of recurrence in early-onset breast cancer. TRIM50, an
E3 ubiquitin ligase, is deleted in Williams-Beuren (WBS)
syndrome, a multi-system neurodevelopmental disorder
caused by the deletion of contiguous genes at chromosome
region 7q11.23.
Length = 186
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV---------ALSVV---GFSKGAHYWEFVID 180
T DP + P L S + T V C + R+ + V+ GFS G HYWE +
Sbjct: 15 TFDPDTAHPRLVLSDDGTVVECGELKQRLQDSPKRFDQCVCVLASEGFSSGRHYWEVDV- 73
Query: 181 RYDSDTDPSFGIARLDVARDEML 203
T G+A V+R L
Sbjct: 74 --GDKTKWDLGVASETVSRKGKL 94
>gnl|CDD|240491 cd13733, SPRY_PRY_C-IV_1, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM7,
TRIM35, TRIM41, TRIM50, TRIM62, TRIM69, TRIM72, NF7 and
bloodthirsty (bty). This domain, consisting of the
distinct N-terminal PRY subdomain followed by the SPRY
subdomain, is found at the C-terminus of several Class
IV TRIM proteins, including TRIM7, TRIM35, TRIM41,
TRIM50, TRIM62, TRIM69, TRIM72, TRIM protein NF7 and
bloodthirsty (bty). TRIM7 interacts with glycogenin and
stimulates its self-glucosylating activity via its SPRY
domain. TRIM35 may play a role as a tumor suppressor and
is implicated in the cell death mechanism. TRIM41 is
localized to speckles in the cytoplasm and nucleus, and
functions as an E3 ligase that catalyzes the
ubiquitin-mediated degradation of protein kinase C.
TRIM50, an E3 ubiquitin ligase, is deleted in
Williams-Beuren (WBS) syndrome, a multi-system
neurodevelopmental disorder caused by the deletion of
contiguous genes at chromosome region 7q11.23. TRIM62 is
involved in the morphogenesis of the mammary gland; loss
of TRIM62 gene expression in breast is associated with
increased risk of recurrence in early-onset breast
cancer. TRIM69 is a novel testis E3 ubiquitin ligase
that may function to ubiquitinate its particular
substrates during spermatogenesis. In humans, TRIM69
localizes in the cytoplasm and nucleus, and requires an
intact RING finger domain to function. TRIM protein NF7,
which also contains a chromodomain (CHD) at the
N-terminus and an RFP (Ret finger protein)-like domain
at the C-terminus, is required for its association with
transcriptional units of RNA polymerase II which is
mediated by a trimeric B box. In Xenopus oocyte, xNF7
has been identified as a nuclear microtubule-associated
protein (MAP) whose microtubule-bundling activity, but
not E3-ligase activity, contributes to microtubule
organization and spindle integrity. Bloodthirsty (bty)
is a novel gene identified in zebrafish and has been
shown to likely play a role in in regulation of the
terminal steps of erythropoiesis. TRIM72 has been shown
to perform a critical function in membrane repair
following acute muscle injury by nucleating the assembly
of the repair machinery at injury sites.
Length = 176
Score = 37.1 bits (86), Expect = 0.004
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYEHRV---------ALSVVG---FSKGAHYWE 176
++DP + P+L S + +V GY+ + A+ V+G FS G HYWE
Sbjct: 2 LSLDPNTAHPNLVVSDDLRSVRLGGYKVPLPENPERFDSAVCVLGSRGFSSGRHYWE 58
>gnl|CDD|240471 cd12891, SPRY_PRY_C-IV_2, PRY/SPRY domain in tripartite
motif-containing (TRIM) proteins, including TRIM14-like,
TRIM16-like, TRIM25-like, TRIM47-like and RNF135 and
stonustoxin. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of several Class IV TRIM
proteins, including TRIM14, TRIM16 and TRIM25, TRIM47
as well as RING finger protein RNF135 and stonustoxin, a
secreted poisonous protein of the stonefish Synanceja
horrida. TRIM16 (also known as estrogen-responsive B box
protein or EBBP) has E3 ubiquitin ligase activity. It is
a regulator of keratinocyte differentiation and a tumor
suppressor in retinoid-sensitive neuroblastoma. TRIM25
(also called Efp) ubiquitinates the N terminus of the
viral RNA receptor retinoic acid-inducible gene-I
(RIG-I) in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. It has been shown that the influenza A
virus targets TRIM25 and disables its antiviral
function. TRIM47, also known as GOA (Gene overexpressed
in astrocytoma protein) or RNF100 (RING finger protein
100), is highly expressed in kidney tubular cells, but
low expressed in most tissue. It is overexpressed in
astrocytoma tumor cells and plays an important role in
the process of dedifferentiation that is associated with
astrocytoma tumorigenesis. RNF135 ubiquitinates RIG-I
(retinoic acid-inducible gene-I) to promote
interferon-beta induction during the early phase of
viral infection. Stonustoxin (STNX) is a hypotensive and
lethal protein factor that also possesses other
biological activities such as species-specific hemolysis
(due to its ability to form pores in the cell membrane)
and platelet aggregation, edema-induction, and
endothelium-dependent vasorelaxation (mediated by the
nitric oxide pathway and activation of potassium
channels).
Length = 169
Score = 36.0 bits (84), Expect = 0.009
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV------------ALSVVGFSKGAHYWE 176
T+DP + +L S ++ VT L S G HYWE
Sbjct: 2 TLDPNTAHKNLRLSEDNRKVTVSSTPQPYPDHPERFDHWPQVLCTESLSSGRHYWE 57
Score = 32.9 bits (76), Expect = 0.084
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFF 63
G++DK+W + + H +++ T S +GV LD + L F+
Sbjct: 86 GRNDKSWCLEWSGDKYSAWH---NNKETPLPGPPSSRIGVYLDYEAGTLSFY 134
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2. This SPRY domain is found
at the C-terminus of Ash2 (absent, small, or homeotic
discs 2) -like proteins, core components of all
mixed-lineage leukemia (MLL) family histone
methyltransferases. Ash2 is a member of the trithorax
group of transcriptional regulators of the Hox genes.
Recent studies show that the SPRY domain of Ash2
mediates the interaction with RbBP5 and has an important
role in regulating the methyltransferase activity of MLL
complexes. In yeast, Ash2 is involved in histone
methylation and is required for the earliest stages of
embryogenesis.
Length = 149
Score = 35.2 bits (82), Expect = 0.012
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 143 LFFSPEHTTVTCD-GYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVARDE 201
L S + TVT + GY R+A + G +G Y+E I +T G R+ +R E
Sbjct: 1 LKLSEDRLTVTGEKGY--RMARANHGVREGKWYFEVKILEGGGET----GHVRVGWSRRE 54
Score = 35.2 bits (82), Expect = 0.014
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 31 HASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ-PNFYNISNRLVAH 82
H S E G +G +G L+ L + + FF N + Q F +I +
Sbjct: 79 HLSRGKPYGEPGFKEGDVIGCLITLPK--IEFFKNGKSQGVAFEDIYGTGGYY 129
Score = 31.7 bits (73), Expect = 0.17
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 255 AFHNLY--GVFYPAVSLNRGVTVTLHTG 280
AF ++Y G +YPAVSL G TV L+ G
Sbjct: 118 AFEDIYGTGGYYPAVSLYMGATVRLNFG 145
>gnl|CDD|240501 cd13743, SPRY_PRY_TRIM50, PRY/SPRY domain in tripartite
motif-binding protein 50 (TRIM50). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM50. TRIM50, an E3 ubiquitin ligase, is
deleted in Williams-Beuren (WBS) syndrome, a
multi-system neurodevelopmental disorder caused by the
deletion of contiguous genes at chromosome region
7q11.23. It is specifically expressed in gastric
parietal cells and may play an essential role in
tubulovesicular dynamics. It also interacts with and
increases the level of p62, a multifunctional adaptor
protein that is implicated in various cellular processes
such as the autophagy clearance of polyubiquitinated
protein aggregates.
Length = 189
Score = 34.6 bits (79), Expect = 0.030
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 134 MDPGRSAPDLFFSPEHTTVTCDGYEHRVA------------LSVVGFSKGAHYWEFVIDR 181
+DP + P L S +T V C R A L+ GFS G HYWE V+
Sbjct: 16 LDPATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASKGFSCGRHYWEVVV-- 73
Query: 182 YDSDTDPSFGIARLDVARDEMLVK 205
S +D G+ + +R L K
Sbjct: 74 -GSKSDWRLGVIKGTASRKGKLNK 96
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain. SPRY Domain is named from SPla and
the RYanodine Receptor. Domain of unknown function.
Distant homologues are domains in
butyrophilin/marenostrin/pyrin homologues.
Length = 125
Score = 33.5 bits (77), Expect = 0.042
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEP 68
G D+ +W + S + +G +G LDL+ + F N +
Sbjct: 36 GDDEGSWGYDGSGGSKYHNGES---EPYGLKFQEGDVIGCFLDLEEGEISFTKNGKD 89
Score = 27.0 bits (60), Expect = 6.4
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 170 KGAHYWEFVIDRYDSDTDPSFGIARLDVARDEM 202
G HY+E +D G A V +
Sbjct: 1 SGKHYFEVEVDTGG-GGHVRVGWATKSVKKPGF 32
>gnl|CDD|240480 cd12900, SPRY_PRY_Btn_TRIMs, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM4, 5, 6, 11,
21, 22, 27, 30, 34, 38, 58, 60, 68, 75). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of pyrin, several tripartite motif-containing
proteins (TRIMs), as well as butyrophilin (Btns) and
butyrophilin-like (Btnl) family members, with the
exception of Btnl2. Btn and Btnl family members are
novel regulators of immune responses, with many of the
genes located within the MHC. They are implicated in
T-cell inhibition and modulation of epithelial cell-T
cell interactions. Expression of TRIM4 (also known as
ring finger protein 87 or RNF87) genes, including that
of CHCHD2 and PKIB, differs significantly in
Huntington's disease (HD), a prototypical genetic
disorder with delayed clinical onset, despite ubiquitous
expression of the mutated gene during development.
TRIM5-alpha is a cytoplasmic protein that recognizes the
incoming capsid (CA) protein of retroviruses and
potently inhibits virus infection in a species-specific
manner; it recognizes and interacts directly with HIV
CA, thus disrupting the ordered process of viral
uncoating, and subsequent reverse transcription and
virus replication, while species-specific differences
are determined by sequence variations within the
C-terminal B30.2/PRYSPRY domain. TRIM6 regulates the
transcriptional activity of proto-oncogene product Myc
during the maintenance of ES cell pluripotency,
suggesting that TRIM6 functions as a novel regulator for
Myc-mediated transcription in ES cells. TRIM11 is
involved in the function and development of the nervous
system and is overexpressed in high-grade gliomas and
promotes proliferation, invasion, migration and glial
tumor growth. TRIM21 (also known as RO52, SSA1 or RNF81)
is a major autoantigen in autoimmune diseases such as
rheumatoid arthritis, systemic lupus erythematosus, and
Sjorgen's syndrome. TRIM21 interacts with connexin 43
(Cx43) providing mechanisms for down-regulation of gap
junction (GJ) intercellular communication thus impacting
a variety of physiological processes. Expression of the
TRIM34 gene is up-regulated by interferon and is mapped
to chromosome 11p15, where it resides within a TRIM gene
cluster. TRIM30 alpha negatively regulates Toll-like
receptor (TLR)-mediated NF-kappa B activation by
targeting degradation of adaptors TAB2 and TAB3 that are
in complex with kinase TAK1. TRIM5 gene's closest human
paralogs are TRIM6, TRIM22 and TRIM34. It has also been
shown that the RBCC domains of TRIM6, 21 and 34 can
functionally replace the corresponding domains of
TRIM5alpha with respect to inhibition of HIV-1 infection
through binding of the chimeras to HIV-1 capsid
complexes. TRIM27 (also known as Ret finger protein, RFP
or RNF76) negatively regulates CD4 T-cells by
ubiquitinating and inhibiting the class II
phosphatidylinositol 3 kinase C2beta (PI3K-C2beta), a
kinase critical for KCa3.1 channel activation. It is
also a specific binding partner for NOD2, the
nucleotide-binding domain and leucine-rich repeat
containing gene family (NLR) member 2 involved in
mediating antimicrobial responses. It negatively
regulates NOD2-mediated signaling by degrading NOD2, and
therefore a potential target for therapeutic
intervention in NOD2-associated diseases such as
early-onset sarcoidosis and Blau syndrome. TRIM38
negatively regulates Toll-like receptor 3
(TLR3)-mediated type I interferon signaling by targeting
TIR domain-containing adaptor inducing IFN-beta (TRIF).
TRIM60 (also known as RNF33 or ring finger protein 33)
interacts with kinesin-2 family members 3A (KIF3A) and
3B (KIF3B) motor proteins known to transport cargos
along the microtubule, possibly contributing to
kinesin-dependent mobilization of specific cargos along
the microtubule. TRIM68 regulates ligand-dependent
transcription of androgen receptor in prostate cancer
cells; its overexpression causes an increase in
prostate-specific antigen (PSA), a reliable diagnostic
marker for prostate cancer, making TRIM68 a likely novel
diagnostic tool and a potentially therapeutic target.
The PRY/SPRY domain of pyrin, which is mutated in
familial Mediterranean fever patients, interacts with
inflammasome components and inhibits proIL-1beta
processing.
Length = 173
Score = 34.0 bits (79), Expect = 0.043
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV---------ALSVVG---FSKGAHYWE 176
T+DP + P+L S + +V + V+G F+ G HYWE
Sbjct: 6 TLDPDTAHPNLILSEDRRSVRYGDTRQDLPDNPERFDSYPCVLGSPGFTSGRHYWE 61
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor.
Domain of unknown function. Distant homologues are
domains in butyrophilin/marenostrin/pyrin homologues.
Length = 122
Score = 33.0 bits (76), Expect = 0.057
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEP 68
G+D +W D + + H S + G +G LDL+ + F+ N +
Sbjct: 34 GEDKGSWGYDGDGGKKY--HNSTGPEYGLPLQEPGDVIGCFLDLEAGTISFYKNGKY 88
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 170 KGAHYWEFVIDRYDSDTDPSFGIARLDVARDEM 202
G HY+E I G+A V R
Sbjct: 1 SGRHYFEVEI---GDGGHWRVGVATKSVPRGYF 30
>gnl|CDD|240468 cd12888, SPRY_PRY_TRIM7_like, PRY/SPRY domain in tripartite
motif-binding protein 7 (TRIM7)-like, including TRIM7,
TRIM10, TRIM15, TRIM26, TRIM39, TRIM41. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of several tripartite motif-containing (TRIM)
proteins, including TRIM7 (also referred to as
glycogenin-interacting protein, RING finger protein 90
or RNF90), TRIM10, TRIM15, TRIM26, TRIM39 and TRIM41.
TRIM7 or GNIP interacts with glycogenin and stimulates
its self-glucosylating activity via its SPRY domain.
TRIM10 (also known as hematopoietic RING finger 1
(HERF1) or TRIM10/HERF1) plays a key role in definitive
erythroid development; downregulation of the Spi-1/PU.1
oncogene induces the expression of TRIM10/HERF1, a key
factor required for terminal erythroid cell
differentiation and survival. Antiviral activity of
TRIM15 is dependent on the ability of its B-box to
interact with the MLV Gag precursor protein;
downregulation of TRIM15, along with TRIM11, enhances
virus release suggesting that these proteins contribute
to the endogenous restriction of retroviruses in cells.
Tripartite motif-containing 26 (TRIM26) function is as
yet unknown; however, since it is localized in the human
histocompatibility complex (MHC) class I region, TRIM26
may play a role in immune response although studies show
no association between TRIM26 polymorphisms and the risk
of aspirin-exacerbated respiratory disease. TRIM39 is a
MOAP-1 (Modulator of Apoptosis)-binding protein that
stabilizes MOAP-1 through inhibition of its
poly-ubiquitination process. TRIM41 (also known as RING
finger-interacting protein with C kinase or RINCK)
functions as an E3 ligase that catalyzes the
ubiquitin-mediated degradation of protein kinase C.
Length = 171
Score = 32.9 bits (76), Expect = 0.083
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDG------------YEHRVALSVVGFSKGAHYWEFVID 180
T+DP + P L S + +V L GF+ G HYWE +
Sbjct: 3 TLDPDTAHPRLILSEDRKSVRLGEKPQDLPDNPERFDTDPCVLGSEGFTSGRHYWEVEVG 62
Query: 181 RYDSDTDPSFGIARLDVARDEMLV 204
G+AR V R +
Sbjct: 63 DGGGWA---VGVARESVRRKGEVS 83
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine
signaling 3 (SOCS3) family. The SPRY domain-containing
SOCS box protein family (SPSB1-4, also known as SSB-1 to
-4) is composed of a central SPRY protein interaction
domain and a C-terminal SOCS box. All four SPSB proteins
interact with c-Met, the hepatocyte growth factor
receptor, but SOCS3 regulates cellular response to a
variety of cytokines such as leukemia inhibitory factor
(LIF) and interleukin 6. SOCS3, along with SOCS1, are
expressed by immune cells and cells of the central
nervous system (CNS) and have the potential to impact
immune processes within the CNS. In non-small cell lung
cancer (NSCLC), SOCS3 is silenced and proline-rich
tyrosine kinase 2 (Pyk2) is over-expressed; it has been
suggested that SOCS3 could be an effective way to
prevent the progression of NSCLC due to its role in
regulating Pyk2 expression.
Length = 187
Score = 32.6 bits (75), Expect = 0.15
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 45 QGSTVGVLLDLDRHLLRFFVNDEPQP 70
QG+ +GV LD+ L F+ N +P
Sbjct: 115 QGTIIGVHLDMWSGTLTFYKNGKPLG 140
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really
Interesting New Gene (RING) finger domain. This SPRY
domain is found at the N-terminus of RING finger
domains which are present in a variety of functionally
distinct proteins and known to be involved in
protein-protein and protein-DNA interactions.
RING-finger domain is a type of Zn-finger that binds
two Zn atoms and is identified in proteins with a wide
range of functions such as viral replication, signal
transduction, and development.
Length = 121
Score = 31.1 bits (71), Expect = 0.21
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 46 GSTVGVLLDLDRHLLRFFVNDEPQP 70
G VG LLDLD+ + F +N P
Sbjct: 67 GDVVGCLLDLDKKQMIFSLNGNRLP 91
>gnl|CDD|240496 cd13738, SPRY_PRY_TRIM14, PRY/SPRY domain of tripartite
motif-binding protein 14 (TRIM14). This is a TRIM14
domain family contains residues in the N-terminus that
form a distinct PRY domain structure such that the B30.2
domain consists of PRY and SPRY subdomains. TRIM14
domains have yet to be characterized. These B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
It belongs to Class IV TRIM protein family which has
members involved in antiviral immunity at various levels
of interferon signaling cascade.
Length = 173
Score = 31.4 bits (71), Expect = 0.31
Identities = 42/170 (24%), Positives = 55/170 (32%), Gaps = 35/170 (20%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEH------------RVALSVVGFSKGAHYWEFVID 180
T+DP L S + TV C+ LS F+ G HYWE +D
Sbjct: 2 TLDPDTMHARLRLSDDRLTVRCNLLGILGPCPPQRFDKLWQVLSRDAFASGRHYWE--VD 59
Query: 181 RYDSDTD-------PSFG------IARLDVARDEMLVKHRDL-FAVLATCSRYSRLVRGI 226
++ PS ARL R +K DL + R +R
Sbjct: 60 VQEAGAGWWVGAAYPSLRRRGDSEAARLGCNRASWCIKRYDLEYWAFHDGQRSRLRIRDD 119
Query: 227 PDLFAVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVF----YPAVSLNRG 272
PD VF Y + D+ G H F YPA+ L G
Sbjct: 120 PDRLGVFLD---YEAGILSFYDVTGGMSHLHTFRAKFQEPLYPALRLWEG 166
>gnl|CDD|240485 cd12905, SPRY_PRY_TRIM_Bty_69_NF7, PRY/SPRY domain in tripartite
motif-containing protein 69 (TRIM69), Bloodthirsty (bty)
and NF7. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of TRIM69 and TRIM proteins
NF7 and bloodthirsty (bty). TRIM69 is a novel testis E3
ubiquitin ligase that may function to ubiquitinate its
particular substrates during spermatogenesis. In humans,
TRIM69 localizes in the cytoplasm and nucleus, and
requires an intact RING finger domain to function. TRIM
protein NF7, which also contains a chromodomain (CHD) at
the N-terminus and an RFP (Ret finger protein)-like
domain at the C-terminus, is required for its
association with transcriptional units of RNA polymerase
II which is mediated by a trimeric B box. In Xenopus
oocyte, xNF7 has been identified as a nuclear
microtubule-associated protein (MAP) whose
microtubule-bundling activity, but not E3-ligase
activity, contributes to microtubule organization and
spindle integrity. Bloodthirsty (bty) is a novel gene
identified in zebrafish and has been shown to likely
play a role in in regulation of the terminal steps of
erythropoiesis.
Length = 176
Score = 30.4 bits (69), Expect = 0.71
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTC-DGYEH---------RVA--LSVVGFSKGAHYWEF-VI 179
T+DP + P+L S + V D + R L GF+ G HYWE V
Sbjct: 5 TLDPDTAHPNLILSEDLKQVRHGDKKQSVPDNPERFDRSVCVLGKEGFTSGRHYWEVQVG 64
Query: 180 DRYDSDTDPSFGIARLDVAR 199
D+ TD G+AR + R
Sbjct: 65 DK----TDWDLGVARESINR 80
>gnl|CDD|240498 cd13740, SPRY_PRY_TRIM7, PRY/SPRY domain in tripartite
motif-binding protein 7 (TRIM7). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of tripartite motif-containing protein 7
(TRIM7), also referred to as glycogenin-interacting
protein (GNIP) or RING finger protein 90 (RNF90). TRIM7
or GNIP interacts with glycogenin and stimulates its
self-glucosylating activity via its SPRY domain. The
GNIP gene encodes at least four distinct isoforms of
GNIP, of which three (GNIP1, GNIP2, and GNIP3) have the
B30.2 domain.
Length = 169
Score = 30.4 bits (68), Expect = 0.78
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 163 LSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARLDVAR 199
L+ GFS G H+WE + D +FG+AR V R
Sbjct: 45 LASCGFSSGRHHWEVEVGSKDG---WAFGVARESVRR 78
>gnl|CDD|204173 pfam09231, RDV-p3, Rice dwarf virus p3. Members of this family are
core structural proteins found in the double-stranded
RNA virus Phytoreovirus. They are large proteins without
apparent domain division, with a number of all-alpha
regions and one all beta domain near the C-terminal end.
Length = 967
Score = 31.1 bits (70), Expect = 0.86
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 229 LFAVFATCSRYSRLVRGIPDLFAG 252
LF +F C +Y L IPD FAG
Sbjct: 594 LFGIFGICPQYQILGDAIPDFFAG 617
>gnl|CDD|240467 cd12887, SPRY_NHR_like, SPRY domain in neuralized homology repeat.
This family contains the neuralized homology repeat 1
(NHR1) domain similar to the SPRY domain (known to
mediate specific protein-protein interactions) at the
C-terminus of a conserved region within eukaryotic
neuralized and neuralized-like proteins. In Drosophila,
the neuralized protein (Neur) belongs to a group of
ubiquitin ligases and is required in a subset of Notch
pathway-mediated cell fate decisions during development
of the nervous system. Neur binds to the Notch receptor
ligand Delta through its first NHR1 domain and mediates
its ubiquitination for endocytosis. Multiple copies of
this region are found in some members of the family.
Length = 161
Score = 29.8 bits (68), Expect = 1.0
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 43 ISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
+ G VGV+ D L F++N E Q
Sbjct: 109 LRVGDRVGVMRTPDGS-LHFYINGEDQ 134
>gnl|CDD|240482 cd12902, SPRY_PRY_RNF135, PRY/SPRY domain in RING finger protein
RNF135. This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of the RING finger protein
RNF135 (also known as Riplet/RNF135), which
ubiquitinates RIG-I (retinoic acid-inducible gene-I) to
promote interferon-beta induction during the early phase
of viral infection. Normally, RIG-I is activated by
TRIM25 in response to viral infection, leading to
activation of the RIG-I signaling pathway, thus
resulting in type I interferon production to limit viral
replication. However, RNF135, consisting of an
N-terminal RING finger domain, C-terminal SPRY and PRY
motifs and showing sequence similarity to TRIM25, acts
as an alternative factor that promotes RIG-I activation
independent of TRIM25.
Length = 168
Score = 29.8 bits (67), Expect = 1.1
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 133 TMDPGRSAPDLFFSPEHTTVT-----------CDGYEHRVALSVVGFSKGAHYWEFVIDR 181
T D + L SP VT + + + GFS G HYWE +D
Sbjct: 2 TFDLRSLSRRLEVSPTSRRVTVSRHPQAYAWSPERFSISQVMCSQGFSSGCHYWE--VDT 59
Query: 182 YDSDTDPSFGIARLDVARDEML 203
+S + G+A ++ R + L
Sbjct: 60 RNSSG-WAVGVASWEIGRRDKL 80
>gnl|CDD|240502 cd13744, SPRY_PRY_TRIM62, PRY/SPRY domain in tripartite
motif-binding protein 62 (TRIM62). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM62. It is also called DEAR1 ductal
epithelium (associated RING chromosome 1) and is
involved in the morphogenesis of the mammary gland; loss
of TRIM62 gene expression in breast is associated with
increased risk of recurrence in early-onset breast
cancer and thus, TRIM62 is a predictive biomarker.
Length = 188
Score = 29.6 bits (66), Expect = 1.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 13/63 (20%)
Query: 130 AWFTMDPGRSAPDLFFSPEHTTVTCDGYEHR----------VALSVVG---FSKGAHYWE 176
A T+DP + L S + T V + V +SV+G FS G HYWE
Sbjct: 12 AALTLDPSTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGDEGFSGGVHYWE 71
Query: 177 FVI 179
V+
Sbjct: 72 VVV 74
>gnl|CDD|240499 cd13741, SPRY_PRY_TRIM41, PRY/SPRY domain in tripartite
motif-binding protein 41 (TRIM41). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of tripartite motif-containing protein 41
(TRIM41). TRIM41 (also known as RING finger-interacting
protein with C kinase or RINCK) is localized to speckles
in the cytoplasm and nucleus, and functions as an E3
ligase that catalyzes the ubiquitin-mediated degradation
of protein kinase C.
Length = 199
Score = 29.3 bits (65), Expect = 1.7
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRVA------------LSVVGFSKGAHYWE 176
T+DP + P L SP+ V V L GF G HYWE
Sbjct: 3 TLDPDTAHPALMLSPDRRGVRLAERRQEVPDHPKRFSADCCVLGAQGFRSGRHYWE 58
>gnl|CDD|223512 COG0435, ECM4, Predicted glutathione S-transferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 324
Score = 29.2 bits (66), Expect = 2.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 156 GYEHRVALSVVGFSKGAHYWEFVIDRYDSDTDPSFGIARL 195
G E +++SVV + W F + + DP +GI RL
Sbjct: 74 GLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERL 113
>gnl|CDD|240478 cd12898, SPRY_PRY_TRIM76, PRY/SPRY domain in tripartite
motif-containing protein 76 (TRIM76), also called
cardiomyopathy-associated protein 5. This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM76, a Class I TRIM protein. TRIM76
(also known as cardiomyopathy-associated protein 5 or
CMYA5 or myospryn or SPRYD2) is a muscle-specific member
of the TRIM superfamily, but lacks the RING domain. It
has been suggested that TRIM76 is involved in two
distinct processes, protein kinase A signaling and
vesicular trafficking. It has also been implicated in
Duchenne muscular dystrophy and cardiac disease; gene
polymorphism of TRIM76 is associated with left
ventricular wall thickness in patients with hypertension
while its interactions with M-band titin and calpain 3
link it to tibial and limb-girdle muscular dystrophies.
Length = 171
Score = 28.7 bits (64), Expect = 2.6
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 141 PDLFFSPEHTTVTCDGYEHRVALSVVGF---------SKGAHYWEFVIDR 181
P L S + TTV + + S G +YWE V+ R
Sbjct: 13 PALEISADRTTVIYCHEAPEGSPTDTECPSVLGELLPSPGRYYWETVVTR 62
>gnl|CDD|240461 cd12881, SPRY_HERC1, SPRY domain in HERC1. This SPRY domain is
found in the HERC1, a large protein related to
chromosome condensation regulator RCC1. It is widely
expressed in many tissues, playing an important role in
intracellular membrane trafficking in the cytoplasm as
well as Golgi apparatus. HERC1 also interacts with
tuberous sclerosis 2 (TSC2, tuberin), which suppresses
cell growth, and results in the destabilization of TSC2.
However, the biological function of HERC1 has yet to be
defined.
Length = 160
Score = 28.4 bits (64), Expect = 2.7
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 38 RTEGGISQGSTVGVLLDLDRHLLRFFVNDE-PQPNFYNI 75
R +QG + +LD++ L F N E P F ++
Sbjct: 97 RLSPKFTQGDYITCVLDMEERTLSFGKNGEEPGVAFEDV 135
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 28.9 bits (64), Expect = 3.3
Identities = 11/82 (13%), Positives = 21/82 (25%)
Query: 1 MVDELHLKHEAGKDDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLL 60
+ GK K + +++ + + E G VG+ L L
Sbjct: 130 IRILKLRLDPKGKKGKKVVRLRKSRGKYYLSVLVEVEEEEPVPKPGKVVGIDLGLKNLAT 189
Query: 61 RFFVNDEPQPNFYNISNRLVAH 82
P P + +
Sbjct: 190 VSDNGTVPIPRDGRKLLKRLKK 211
>gnl|CDD|240500 cd13742, SPRY_PRY_TRIM72, PRY/SPRY domain in tripartite
motif-binding protein 72 (TRIM72). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM72. Muscle-specific TRIM72 (also known
as Mitsugumin 53 or MG53) has been shown to perform a
critical function in membrane repair following acute
muscle injury by nucleating the assembly of the repair
machinery at injury sites. It is expressed specifically
in skeletal muscle and heart, and tethered to the plasma
membrane and cytoplasmic vesicles via its interaction
with phosphatidylserine. TRIM72 interacts with
dysferlin, a sarcolemmal protein whose deficiency causes
Miyoshi myopathy (MM) and limb girdle muscular dystrophy
type 2B (LGMD2B); this coordination plays an important
role in the repair of sarcolemma damage.
Length = 192
Score = 28.3 bits (63), Expect = 3.5
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRVA-------------LSVVGFSKGAHYWEFVI 179
T DP + P L S V C + VA +S FS+G HYWE +
Sbjct: 15 TFDPDTAHPSLVVSSSGKRVECSEQKQPVAGDDPRRFDKANCVVSHQSFSEGEHYWEVDV 74
>gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain. This domain was named after
the yeast Sec63 (or NPL1) (also known as the Brl domain)
protein in which it was found. This protein is required
for assembly of functional endoplasmic reticulum
translocons. Other yeast proteins containing this domain
include pre-mRNA splicing helicase BRR2, HFM1 protein
and putative helicases.
Length = 314
Score = 28.5 bits (64), Expect = 3.7
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 17/123 (13%)
Query: 52 LLDLDRHLLRFFVNDEPQPNFYNISNRLVAHTVPDILLNDTENRQKAVKEFVIDRYDSDT 111
+ +L R + V E P +++ R+ P + ++ K+ +++ DSDT
Sbjct: 200 IYELLRRFPKIEVEAEVLPITRDLTLRVELEITPVFAWDLPRHKGKSESWWLVV-GDSDT 258
Query: 112 DPSFGIARLDVARDEMLVAW---FT---MDPGRSAPDLFFSPEHTTVTCDGY---EHRVA 162
+ I R+ + + + FT +PG + + D Y + V+
Sbjct: 259 NELLAIKRVTLRKKKKSNEVKLDFTVPLSEPGP--ENYTVY-----LISDSYLGCDQEVS 311
Query: 163 LSV 165
S+
Sbjct: 312 FSL 314
>gnl|CDD|240473 cd12893, SPRY_PRY_TRIM35, PRY/SPRY domain in tripartite
motif-containing protein 35 (TRIM35). This PRY/SPRY
domain is found at the C-terminus of the overall domain
architecture of tripartite motif 35, TRIM35 (also known
as hemopoietic lineage switch protein), which includes a
RING finger domain (RING) and a B-box motif (BBOX).
TRIM35 may play a role as a tumor suppressor and is
implicated in the cell death mechanism.
Length = 171
Score = 28.0 bits (63), Expect = 3.8
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYE------------HRVALSVVGFSKGAHYWE 176
+DP + P L S + T+V + + L GFS G+H W+
Sbjct: 2 VILDPNTAHPWLSLSEDLTSVRNSERKQQLPDNPERFDPYPCVLGSEGFSSGSHSWD 58
>gnl|CDD|215504 PLN02934, PLN02934, triacylglycerol lipase.
Length = 515
Score = 28.6 bits (64), Expect = 4.8
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 50 GVLLDLDRHLLRFFVNDEPQPNFYNISNRLVAH 82
GV L D +++EP N + + N + AH
Sbjct: 411 GVCLYYDSRYFGQKMDEEPDRNPFGLRNAISAH 443
>gnl|CDD|240503 cd13745, SPRY_PRY_TRIM39, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM21, 27 and
others). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of pyrin, several tripartite
motif-containing proteins (TRIMs), including E3
ubiquitin-protein ligase (TRIM21), RET finger protein
(RFP)/tripartite motif protein 27 (TRIM27), as well as
butyrophilin (Btns) and butyrophilin-like (Btnl) family
members, with the exception of Btnl2. Btn and Btnl
family members are novel regulators of immune responses,
with many of the genes located within the MHC. They are
implicated in T-cell inhibition and modulation of
epithelial cell-T cell interactions. TRIM21 (also known
as RO52, SSA1 or RNF81) is a major autoantigen in
autoimmune diseases such as rheumatoid arthritis,
systemic lupus erythematosus, and Sjorgen's syndrome.
TRIM27 (also known as Ret finger protein, RFP or RNF76)
negatively regulates CD4 T-cells by ubiquitinating and
inhibiting the class II phosphatidylinositol 3 kinase
C2beta (PI3K-C2beta), a kinase critical for KCa3.1
channel activation. The PRY/SPRY domain of Pyrin, which
is mutated in familial Mediterranean fever patients,
interacts with inflammasome components and inhibits
proIL-1beta processing.
Length = 184
Score = 27.7 bits (61), Expect = 5.1
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 128 LVAWFTMDPGRSAPDLFFSPEHTTVTCDGYEHRV---------------ALSVVGFSKGA 172
L+A T+DP + P+L S + +V E R+ L+ GF+ G
Sbjct: 1 LIADVTLDPETAHPNLVLSEDRKSVKF--VETRLRDLPDTPKRFTFYPCVLATEGFTSGR 58
Query: 173 HYWEFVIDRYDSDTDPSFGIARLDVAR 199
HYWE + T + G+ R V+R
Sbjct: 59 HYWEVEV---GDKTHWAVGVCRDSVSR 82
>gnl|CDD|240479 cd12899, SPRY_PRY_TRIM76_like, PRY/SPRY domain in tripartite
motif-containing protein 76 (TRIM76)-like. This domain
is similar to the distinct PRY/SPRY subdomain found at
the C-terminus of TRIM76, a Class I TRIM protein. TRIM76
(also known as cardiomyopathy-associated protein 5 or
CMYA5 or myospryn or SPRYD2) is a muscle-specific member
of the TRIM superfamily, but lacks the RING domain. It
has been suggested that TRIM76 is involved in two
distinct processes, protein kinase A signaling and
vesicular trafficking.
Length = 176
Score = 27.8 bits (62), Expect = 5.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 170 KGAHYWEFVIDRYDSDTDPSFGIARLDVARDEML 203
+G HYWE + D T+ G+A D R+ L
Sbjct: 55 RGKHYWEVEV---DEHTEYRIGVAFEDTRRNGYL 85
>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated.
Length = 287
Score = 27.7 bits (62), Expect = 6.2
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 231 AVFATCSRYSRLVRGIPDLFAGPIAFHNLYGVFYP 265
VFA C + RGIP L A P+ VF P
Sbjct: 135 LVFAACQQ-----RGIPALTAAPLGMGTALLVFDP 164
>gnl|CDD|240454 cd12874, SPRY_PRY, PRY/SPRY domain, also known as B30.2. This
domain contains residues in the N-terminus that form a
distinct PRY domain structure such that the B30.2 domain
consists of PRY and SPRY subdomains. B30.2 domains
comprise the C-terminus of three protein families: BTNs
(receptor glycoproteins of immunoglobulin superfamily);
several TRIM proteins (composed of
RING/B-box/coiled-coil core); Stonutoxin (secreted
poisonous protein of the stonefish Synanceia horrida).
While SPRY domains are evolutionarily ancient, B30.2
domains are a more recent adaptation where the SPRY/PRY
combination is a possible component of immune defense.
Among the TRIM proteins, also known as the N-terminal
RING finger/B-box/coiled coil (RBCC) family, only
Classes I and IV contain the B30.2 domain that has
evolved under positive selection. Class IV TRIM proteins
include multiple members involved in antiviral immunity
at various levels of interferon signaling cascade.
Length = 167
Score = 27.0 bits (60), Expect = 9.0
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVT--------CDGYEHR----VALSVVGFSKGAHYWE 176
FT+D + P+L S + +VT +G E L F G HYWE
Sbjct: 1 FTLDNSTAHPNLILSDDLRSVTWGDKGQKGPEGPERFDSWYTVLGDTSFLSGRHYWE 57
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.433
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,750,557
Number of extensions: 1549850
Number of successful extensions: 1515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1497
Number of HSP's successfully gapped: 55
Length of query: 293
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 197
Effective length of database: 6,679,618
Effective search space: 1315884746
Effective search space used: 1315884746
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.6 bits)