RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18207
(293 letters)
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 213
Score = 49.9 bits (118), Expect = 6e-08
Identities = 23/163 (14%), Positives = 41/163 (25%), Gaps = 22/163 (13%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDGYEH--RVALSVVGFSKGAHYWEFVIDRYDSDTDPS 189
+P + ++ G+S+G H WE T
Sbjct: 35 HGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAV 94
Query: 190 FGIARLDVARDE-----MLVKHRDLFAVLATCSRYSRLVRGIPDL---FAVFATCSRYSR 241
G+A +L + + + + +G+
Sbjct: 95 VGVATALAPLQADHYAALLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPE 154
Query: 242 LVRGIPDLFAG-----------PIAFHNLYGV-FYPAVSLNRG 272
+ + D+ G AF L G YP+VS G
Sbjct: 155 RLLVVLDMEEGTLGYSIGGTYLGPAFRGLKGRTLYPSVSAVWG 197
Score = 30.6 bits (68), Expect = 0.17
Identities = 5/52 (9%), Positives = 13/52 (25%)
Query: 18 WSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQ 69
+ Q + + V+LD++ L + +
Sbjct: 125 GRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYL 176
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 217
Score = 44.8 bits (105), Expect = 3e-06
Identities = 26/181 (14%), Positives = 45/181 (24%), Gaps = 27/181 (14%)
Query: 132 FTMDPGRSAPDLFFSPEHTTVTCDG---YEHRVALSVVGFSKGAHYWEFVIDRYDSDTDP 188
+ + + ++F + VG +KG H WE T
Sbjct: 24 HSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHA 83
Query: 189 SFGIARLDVARDEMLVKH---RDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYSR---- 241
G+ D + + + R + +
Sbjct: 84 VVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLV 143
Query: 242 --LVRGIPDLFAGPI-----------AFHNLYGV-FYPAVSL---NRGVTVTLHTGLEVP 284
D+ G + AF L G YP VS + +T+ GL+
Sbjct: 144 PDKFLVALDMDEGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPE 203
Query: 285 P 285
P
Sbjct: 204 P 204
Score = 35.1 bits (80), Expect = 0.006
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 12 GKDDKAWSMYIDKQRSWFMHASI------HDQRTEGGISQGSTVGVLLDLDRHLLRFFVN 65
G +++W + + + + + + + V LD+D L F V+
Sbjct: 104 GSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDEGTLSFIVD 163
Query: 66 DEPQ 69
+
Sbjct: 164 QQYL 167
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 188
Score = 35.0 bits (80), Expect = 0.004
Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 31/166 (18%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV------------ALSVVGFSKGAHYWEFVID 180
T D + L S + + L F+ G HYWE +
Sbjct: 13 TFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVG 72
Query: 181 RYDSDTDPSFGIARLDVARDEMLVKHRDLFAVLATCSRYSRLVRGIPDLFAVFATCSRYS 240
G+ + V R + + + C + ++ S
Sbjct: 73 T---SQVWDVGVCKESVNRQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW--VSPQL 127
Query: 241 RLVRGIPDLFAGPIAFHN------LY--------GVFYPAVSLNRG 272
V D+ IAF+N +Y + P + RG
Sbjct: 128 HRVGIFLDVGMRSIAFYNVSDGCHIYTFIEIPVCEPWRPFFAHKRG 173
Score = 28.8 bits (64), Expect = 0.54
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 14 DDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFFVNDEPQPNFY 73
+ ++ + + + VG+ LD+ + FY
Sbjct: 97 EHGFLTVGCREGKVFAASTVPMTPLWVSPQLH--RVGIFLDVGMRSI----------AFY 144
Query: 74 NISNRLVAHTVPDI 87
N+S+ +T +I
Sbjct: 145 NVSDGCHIYTFIEI 158
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 33.1 bits (75), Expect = 0.018
Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 15/80 (18%)
Query: 133 TMDPGRSAPDLFFSPEHTTVTCDGYEHRV------------ALSVVGFSKGAHYWEFVID 180
T+DP + P L S + V + + L F G HYWE +
Sbjct: 4 TLDPDTANPWLILSEDRRQVRLGDTQQSIPGNEERFDSYPMVLGAQHFHSGKHYWEVDVT 63
Query: 181 RYDSDTDPSFGIARLDVARD 200
G+ R V R
Sbjct: 64 G---KEAWDLGVCRDSVRRK 80
Score = 25.8 bits (56), Expect = 5.1
Identities = 6/50 (12%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 14 DDKAWSMYIDKQRSWFMHASIHDQRTEGGISQGSTVGVLLDLDRHLLRFF 63
W++++ ++ + VG+ LD + ++ F+
Sbjct: 88 KSGFWTIWLWNKQKYEAGTYPQTPLHLQ--VPPCQVGIFLDYEAGMVSFY 135
>d1uf2a_ e.28.1.2 (A:) RDV p3 {Rice dwarf virus [TaxId: 10991]}
Length = 967
Score = 31.9 bits (72), Expect = 0.11
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 229 LFAVFATCSRYSRLVRGIPDLFAG 252
LF VF +Y L +PD FAG
Sbjct: 593 LFGVFGIVPQYQILNEAVPDFFAG 616
Score = 27.3 bits (60), Expect = 3.1
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 209 LFAVLATCSRYSRLVRGIPDLFAVFATCSRYSRLVRGIPDLF-----AGPIAFHNLYGVF 263
LF V +Y L +PD FA +L+R + D P +L VF
Sbjct: 593 LFGVFGIVPQYQILNEAVPDFFAGGEDI-LILQLIRAVYDTLSNKLGRNPADIFHLEEVF 651
Query: 264 YPAVSLNRGVTVTLHTGLEV 283
+ V+V + ++V
Sbjct: 652 K---VIEEIVSVLVQQKIDV 668
>d1hqta_ c.1.7.1 (A:) Aldose reductase (aldehyde reductase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 324
Score = 25.3 bits (54), Expect = 9.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 274 TVTLHTGLEVP 284
V LHTG ++P
Sbjct: 4 CVLLHTGQKMP 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.433
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,149,380
Number of extensions: 52480
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 12
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.2 bits)