BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18211
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
GDVY+VGCTNVGKST N ++ +A+ + TTS +PGTTL++++
Sbjct: 162 GGDVYVVGCTNVGKSTFINRIIE------EATGKGNVITTSYFPGTTLDMIE 207
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 7/50 (14%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRA-TTSPWPGTTLNLL 82
DVY+VGCTNVGKST N ++ + SD TTS +PGTTL+L+
Sbjct: 162 DVYVVGCTNVGKSTFINRXIK------EFSDETENVITTSHFPGTTLDLI 205
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 20/72 (27%)
Query: 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLI 66
LE + + L ++PE ++ A V +VG NVGKSTLFNA L +
Sbjct: 164 LEEKGLDLESKPE---------ITDAIKVAIVGRPNVGKSTLFNAILNKE---------- 204
Query: 67 SRATTSPWPGTT 78
RA SP PGTT
Sbjct: 205 -RALVSPIPGTT 215
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISR---ATTSPWPGTTLNLL 82
V +VG NVGKSTLFN ++ ++ + ++R T W G T L+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV 54
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
A ++L+ + +VG NVGKSTL N L D RA + PGTT +++
Sbjct: 235 DAGILLNRGLRMVIVGKPNVGKSTLLNRLLNED-----------RAIVTDIPGTTRDVIS 283
Query: 84 EIIKIQTV 91
E I I+ +
Sbjct: 284 EEIVIRGI 291
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 11/56 (19%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
+L + V +VG NVGKS+L NA+ QSD RA + PGTT ++++
Sbjct: 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSD-----------RAIVTDLPGTTRDVVE 264
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
V L GC NVGK++LFNA ++ + WPG T+
Sbjct: 8 VALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTV 40
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 37 LVGCTNVGKSTLFNAFLQSDL-------CKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+VG NVGKSTLFNA ++ + C I+ + P P L+ L EI+K +
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN-----TGVVPMPDPRLDALAEIVKPE 61
Query: 90 TV 91
+
Sbjct: 62 RI 63
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
V L GC NVGK++LFNA ++ + WPG T+
Sbjct: 8 VALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTV 40
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob
Iron Iransporter
Length = 168
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 12/45 (26%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
V L GC NVGK++LFNA ++ + WPG T+
Sbjct: 8 VALAGCPNVGKTSLFNALTG------------TKQYVANWPGVTV 40
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKE--- 84
++S + G N GKSTL N L + RA S PGTT + ++E
Sbjct: 229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQE-----------RAIVSHMPGTTRDYIEECFI 277
Query: 85 ----IIKIQTVCKVKELGKKILLSQVKGKNMSKTE 115
+ ++ ++E G++I ++ M E
Sbjct: 278 HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 12/45 (26%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
V LVG NVGK+T+FNA R WPG T+
Sbjct: 6 VALVGNPNVGKTTIFNALTG------------LRQHVGNWPGVTV 38
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
++ L+G NVGKST+FNA ++ WPG T+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVY------------IGNWPGVTV 39
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
++ L+G NVGKST+FNA ++ WPG T+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVY------------IGNWPGVTV 38
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
++ L+G NVGKST+FNA ++ WPG T+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVY------------IGNWPGVTV 42
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
++ L+G NVGKST+FNA ++ WPG T+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVY------------IGNWPGVTV 38
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V +VG NVGKSTLFNA +++
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN 25
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V +VG NVGKSTLFNA +++
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN 25
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
+ +G V +VG NVGKSTL N L + I SP P TT L+ I+
Sbjct: 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-----------SPRPQTTRKRLRGIL 50
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLC 58
G+V VG +NVGKS+L NA +
Sbjct: 24 GEVAFVGRSNVGKSSLLNALFNRKIA 49
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 23 VSADLVLSS-AGDVY----LVGCTNVGKSTLFNAF------LQSDLCKIKASDLISRATT 71
+S D V+SS +G+ Y L+G VGKSTL N F + SD C++ D R
Sbjct: 23 MSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLM 81
Query: 72 SPWPGTTLNLL 82
T+ LL
Sbjct: 82 VDGESATIILL 92
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKE 96
+VG + +GKSTL N+ +DL + +PG + + K + Q+ +KE
Sbjct: 36 VVGESGLGKSTLINSLFLTDL------------YSPEYPGPSHRIKKTVQVEQSKVLIKE 83
Query: 97 LGKKILLSQV 106
G ++LL+ V
Sbjct: 84 GGVQLLLTIV 93
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
G V +VG NVGKSTL N L + + I SP GTT
Sbjct: 9 VGYVAIVGKPNVGKSTLLNNLLGTKVSII-----------SPKAGTT 44
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
V +VG NVGKS+LFN L+ A + PG T +L + +++
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKK-----------RSAVVADVPGVTRDLKEGVVE 45
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The
3' End Of 16s Rrna
Length = 308
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
G V +VG NVGKSTL N L + + I SP GTT
Sbjct: 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSII-----------SPKAGTT 45
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (Form B)
Length = 444
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 23 VSADLVLSSAGDVYLVGCTNVGKSTLFN 50
+ D+VL S G Y C+NVG++ LF+
Sbjct: 276 LHGDVVLCSLGFRYKSYCSNVGRTYLFD 303
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
pdb|3CB5|B Chain B, Crystal Structure Of The S. Pombe Peptidase Homology
Domain Of Fact Complex Subunit Spt16 (form A)
Length = 444
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 23 VSADLVLSSAGDVYLVGCTNVGKSTLFN 50
+ D+VL S G Y C+NVG++ LF+
Sbjct: 276 LHGDVVLCSLGFRYKSYCSNVGRTYLFD 303
>pdb|3KEO|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
Regulatory Protein From Streptococcus Agalactiae
Complexed With Nad+
pdb|3KEO|B Chain B, Crystal Structure Of A Rex-Family Transcriptional
Regulatory Protein From Streptococcus Agalactiae
Complexed With Nad+
pdb|3KEQ|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
Regulatory Protein From Streptococcus Agalactiae
Complexed With Nad+
pdb|3KEQ|B Chain B, Crystal Structure Of A Rex-Family Transcriptional
Regulatory Protein From Streptococcus Agalactiae
Complexed With Nad+
pdb|3KET|A Chain A, Crystal Structure Of A Rex-Family Transcriptional
Regulatory Protein From Streptococcus Agalactiae Bound
To A Palindromic Operator
Length = 212
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI------KASDLISRATTSPWP 75
S +V LVGC N+G++ L F + +I ++DL+ + T P
Sbjct: 82 HSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIP 133
>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat
Length = 332
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 6 ALEGRE-------VILVARPEPNIVSADLVLSSAGDVYLV 38
ALEG+E +L PNIV+ D + S G +YL+
Sbjct: 55 ALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI 94
>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FG9|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-320 In Complex With Atp
pdb|4FGB|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I Apo Form
Length = 320
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 6 ALEGRE-------VILVARPEPNIVSADLVLSSAGDVYLV 38
ALEG+E +L PNIV+ D + S G +YL+
Sbjct: 55 ALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI 94
>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
pdb|4FG8|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-315 In Complex With Atp
Length = 315
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 6 ALEGRE-------VILVARPEPNIVSADLVLSSAGDVYLV 38
ALEG+E +L PNIV+ D + S G +YL+
Sbjct: 55 ALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI 94
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKE 96
+VG + +GKSTL N+ +DL + +PG + + K + Q+ +KE
Sbjct: 13 VVGESGLGKSTLINSLFLTDL------------YSPEYPGPSHRIKKTVQVEQSKVLIKE 60
Query: 97 LGKKILLSQV 106
G ++LL+ V
Sbjct: 61 GGVQLLLTIV 70
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 8 EGREVILVARPEPN-IVSADLVLSSAGDVYLVGCTNVGKSTLFN 50
+G+ VI + EP ++ L V +VG N GKST+ N
Sbjct: 74 QGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIIN 117
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKE 96
+VG + +GKSTL N+ +DL + +PG + + K + Q+ +KE
Sbjct: 8 VVGESGLGKSTLINSLFLTDL------------YSPEYPGPSHRIKKTVQVEQSKVLIKE 55
Query: 97 LGKKILLSQV 106
G ++LL+ V
Sbjct: 56 GGVQLLLTIV 65
>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase I 1-293 In Complex With Atp
Length = 293
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 6 ALEGRE-------VILVARPEPNIVSADLVLSSAGDVYLV 38
ALEG+E +L PNIV+ D + S G +YL+
Sbjct: 55 ALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI 94
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 14 LVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSP 73
L+ +P P + S D+VL+ + VG VGK F F + ++ +D + A P
Sbjct: 266 LMGKPHPLVTSTDIVLTITKHLRQVGV--VGK---FVEFFGPGVAQLSIADRATIANMCP 320
Query: 74 WPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQ 120
G T T V E+ K L+ + ++ K +K LQ
Sbjct: 321 EYGAT----------ATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQ 357
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 12/43 (27%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
L+G N GK+TLFNA ++ WPG T+
Sbjct: 6 LIGNPNCGKTTLFNALTNAN------------QRVGNWPGVTV 36
>pdb|2X49|A Chain A, Crystal Structure Of The C-Terminal Domain Of Inva
pdb|2X4A|A Chain A, Crystal Structure Of The C-Terminal Domain Of Inva
Length = 333
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 80 NLLKEIIKIQTVCKVKELGKKILLSQVKGKNM 111
+LLKE+++ TV ++ E+ +++L +V +NM
Sbjct: 163 DLLKEVLRHATVQRISEVLQRLLSERVSVRNM 194
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFL 53
S G + +VG NVGKSTL N L
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLL 26
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRA---TTSPWPGTTLNLL 82
V +VG NVGKST+FN + ++ + ++R +++ W NL+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLI 76
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRA---TTSPWPGTTLNLL 82
V +VG NVGKST+FN + ++ + ++R +++ W NL+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLI 56
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFL 53
S G + +VG NVGKSTL N L
Sbjct: 6 SYCGFIAIVGRPNVGKSTLLNKLL 29
>pdb|3QM2|A Chain A, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
pdb|3QM2|B Chain B, 2.25 Angstrom Crystal Structure Of Phosphoserine
Aminotransferase (Serc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium
Length = 386
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57
G EV++ A I+SA L +S G +Y N+G + L ++ DL
Sbjct: 190 GPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDL 238
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPW--PGTTLNLL 82
++G NVGKSTL N + ++ K D T+ W G L LL
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIA--KTGDRPGITTSQQWVKVGKELELL 170
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 14 LVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSP 73
L+ +P P + S D+VL+ + VG VGK F F + ++ +D + A P
Sbjct: 246 LMGKPHPLVTSTDIVLTITKHLRQVGV--VGK---FVEFFGPGVAQLSIADRATIANMCP 300
Query: 74 WPGTT 78
G T
Sbjct: 301 EYGAT 305
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 35 VYLVGCTNVGKSTLFNAF------LQSDLCKIKASDLISRATTSPWPGTTLNLL 82
V L+G VGKSTL N F + SD C++ D R T+ LL
Sbjct: 9 VVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILL 61
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 37 LVGCTNVGKSTLFNAFLQS 55
+VG NVGKST FN S
Sbjct: 27 IVGLPNVGKSTFFNVLTNS 45
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 26 DLVLSSAGDVYLVGCTNVG 44
+LVL+ +GD+Y GC + G
Sbjct: 87 NLVLTKSGDIYSFGCNDEG 105
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 1 MELWPALEGREVILVARPEPN---IVSADLVLSSAGDVYLVGCTNVGK-STLFNAFLQSD 56
+E+W G E+++ P+P ++S + + D +V C G+ T +N +
Sbjct: 163 LEVWAQRTGSEIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELR 222
Query: 57 LCKIKASDLISRATTS---PWPGTT-LNLLKEIIKIQTVCKV 94
CK S +S A GTT LN+L + + V V
Sbjct: 223 GCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGV 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,282,349
Number of Sequences: 62578
Number of extensions: 108648
Number of successful extensions: 428
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 66
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)