BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18211
(127 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NC60|NOA1_HUMAN Nitric oxide-associated protein 1 OS=Homo sapiens GN=NOA1 PE=1 SV=2
Length = 698
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 40/51 (78%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
GDVYLVG TN GKSTLFN L+SD C K S+ I RAT SPWPGTTLNLLK
Sbjct: 339 GDVYLVGATNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLK 389
>sp|Q9JJG9|NOA1_MOUSE Nitric oxide-associated protein 1 OS=Mus musculus GN=Noa1 PE=1 SV=1
Length = 693
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/51 (74%), Positives = 40/51 (78%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
GDVYLVG TN GKSTLFN L+SD C K S+ I RAT SPWPGTTLNLLK
Sbjct: 341 GDVYLVGTTNAGKSTLFNTLLESDYCTAKGSEAIDRATISPWPGTTLNLLK 391
>sp|Q32LB9|NOA1_BOVIN Nitric oxide-associated protein 1 OS=Bos taurus GN=NOA1 PE=2 SV=1
Length = 694
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/51 (72%), Positives = 40/51 (78%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
GDVYLVG TN GKSTLFN L+SD C K ++ I RAT SPWPGTTLNLLK
Sbjct: 340 GDVYLVGSTNAGKSTLFNTLLESDYCIAKGAEAIDRATISPWPGTTLNLLK 390
>sp|A8F7S2|DER_THELT GTPase Der OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385
/ TMO) GN=der PE=3 SV=1
Length = 435
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 21/100 (21%)
Query: 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
L S+ + +VG NVGKS+LFNA L D RAT +P PGTT + + E+I
Sbjct: 172 LFKESSPKIAIVGKPNVGKSSLFNALLNMD-----------RATVTPVPGTTRDPVDEMI 220
Query: 87 KIQTVCKVKELGKKILLSQVKG-KNMSKTEKKPLQPQYSL 125
+I GKK +L G + S+ E+K ++ Q+S+
Sbjct: 221 EIN--------GKKYILVDTAGMRRKSRIERKTIE-QFSI 251
>sp|B0K708|ERA_THEPX GTPase Era OS=Thermoanaerobacter sp. (strain X514) GN=era PE=3
SV=1
Length = 302
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
AG V LVG TNVGKSTL NA LQ + A TSP P TT N ++ I+
Sbjct: 3 HKAGFVALVGRTNVGKSTLLNAILQEKI-----------AITSPKPQTTRNTIRGIL 48
>sp|B0KA54|ERA_THEP3 GTPase Era OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=era PE=3 SV=1
Length = 302
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
AG V LVG TNVGKSTL NA LQ + A TSP P TT N ++ I+
Sbjct: 3 HKAGFVALVGRTNVGKSTLLNAILQEKI-----------AITSPKPQTTRNTIRGIL 48
>sp|P54453|YQEH_BACSU Uncharacterized protein YqeH OS=Bacillus subtilis (strain 168)
GN=yqeH PE=1 SV=1
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 6/50 (12%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
DVY+VGCTNVGKST N ++ D+I TTS +PGTTL+ ++
Sbjct: 161 DVYVVGCTNVGKSTFINRIIKE---VSGEEDII---TTSQFPGTTLDAIE 204
>sp|Q6MFA3|MNME_PARUW tRNA modification GTPase MnmE OS=Protochlamydia amoebophila (strain
UWE25) GN=mnmE PE=3 SV=1
Length = 458
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 11/61 (18%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
+L + L+GC NVGKS+L NA L D RA SP PGTT ++L++ ++
Sbjct: 221 ILHDGLSICLIGCPNVGKSSLMNALLDKD-----------RAIVSPIPGTTRDVLEDHLR 269
Query: 88 I 88
+
Sbjct: 270 L 270
>sp|A6LNG7|DER_THEM4 GTPase Der OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
GN=der PE=3 SV=1
Length = 437
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 20/86 (23%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKV 94
V L+G N GKSTLFN L+ + RA +P PGTT + + E+++I
Sbjct: 182 VALIGRPNAGKSTLFNGILERE-----------RALVTPIPGTTRDAIDELVEIN----- 225
Query: 95 KELGKKILLSQVKG-KNMSKTEKKPL 119
GKK L G + SK E K +
Sbjct: 226 ---GKKYLFIDTAGLRRKSKVEYKSI 248
>sp|A9WKE3|MNME_CHLAA tRNA modification GTPase MnmE OS=Chloroflexus aurantiacus (strain
ATCC 29366 / DSM 635 / J-10-fl) GN=mnmE PE=3 SV=1
Length = 452
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
+VL + V LVG NVGKS+L NA L+ + RA +P PGTT + L+E+
Sbjct: 209 MVLRNGARVVLVGRPNVGKSSLLNALLR-----------VERAIVTPIPGTTRDTLEEMA 257
Query: 87 KIQTV 91
+ V
Sbjct: 258 NLAGV 262
>sp|Q8RB50|ERA_THETN GTPase Era OS=Thermoanaerobacter tengcongensis (strain DSM 15242
/ JCM 11007 / NBRC 100824 / MB4) GN=era PE=3 SV=1
Length = 298
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
AG V L+G TNVGKSTL NA L+ + A TSP P TT N ++ I+
Sbjct: 5 AGFVALIGRTNVGKSTLLNAILKEKV-----------AITSPKPQTTRNTIRGIL 48
>sp|B9K8E0|DER_THENN GTPase Der OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359
/ NS-E) GN=der PE=3 SV=1
Length = 439
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 21/100 (21%)
Query: 29 LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKI 88
++ A + +VG NVGKSTLFNA L + RA SP PGTT + + + + I
Sbjct: 177 ITEAIKIAIVGRPNVGKSTLFNAILNKE-----------RALVSPIPGTTRDPVDDEVFI 225
Query: 89 QTVCKVKELGKKILLSQVKG-KNMSKTEKKPLQPQYSLIK 127
GKK + G + S+ E K ++ +YS +
Sbjct: 226 D--------GKKYIFVDTAGLRRKSRIEPKTVE-RYSTYR 256
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISR---ATTSPWPGTTLNLL 82
V +VG NVGKSTLFN ++ ++ + ++R T W G T L+
Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKRKAIVEDEEGVTRDPVQDTVEWYGKTFRLV 54
>sp|B3ETH9|MNME_AMOA5 tRNA modification GTPase MnmE OS=Amoebophilus asiaticus (strain
5a2) GN=mnmE PE=3 SV=1
Length = 455
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 11/61 (18%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
V+ + + +VG NVGKSTL NA LQ + RA SP PGTT + ++ I
Sbjct: 215 VIKNGLPIAIVGKPNVGKSTLLNALLQEE-----------RAIVSPIPGTTRDFIEAEIN 263
Query: 88 I 88
I
Sbjct: 264 I 264
>sp|B1LBI4|DER_THESQ GTPase Der OS=Thermotoga sp. (strain RQ2) GN=der PE=3 SV=1
Length = 439
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 30/119 (25%)
Query: 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLI 66
LE + + L ++PE ++ A V +VG NVGKSTLFNA L +
Sbjct: 164 LEEKGLDLESKPE---------ITDAIKVAIVGRPNVGKSTLFNAILNKE---------- 204
Query: 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKG-KNMSKTEKKPLQPQYS 124
RA SP PGTT + + E + I GKK + G + S+ E + ++ +YS
Sbjct: 205 -RALVSPIPGTTRDPVDEEVFID--------GKKYVFVDTAGLRRRSRVEPRTVE-KYS 253
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTS---PWPGTTLNLL 82
V +VG NVGKSTLFN ++ ++ + ++R W G T L+
Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDIVEWYGKTFKLV 54
>sp|Q2LSF6|MNME_SYNAS tRNA modification GTPase MnmE OS=Syntrophus aciditrophicus (strain
SB) GN=mnmE PE=3 SV=1
Length = 457
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
V V + G N GKS+L N LQ RA +P PGTT + ++E I
Sbjct: 215 VYRHGATVVIAGKPNTGKSSLLNCLLQE-----------KRAIVTPVPGTTRDFIEEAIS 263
Query: 88 IQTV 91
IQ V
Sbjct: 264 IQGV 267
>sp|Q9X1F8|DER_THEMA GTPase Der OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=der PE=1 SV=1
Length = 439
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 21/97 (21%)
Query: 29 LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKI 88
++ A V +VG NVGKSTLFNA L + RA SP PGTT + + + + I
Sbjct: 177 ITDAIKVAIVGRPNVGKSTLFNAILNKE-----------RALVSPIPGTTRDPVDDEVFI 225
Query: 89 QTVCKVKELGKKILLSQVKG-KNMSKTEKKPLQPQYS 124
G+K + G + S+ E + ++ +YS
Sbjct: 226 D--------GRKYVFVDTAGLRRKSRVEPRTVE-KYS 253
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISR---ATTSPWPGTTLNLL 82
V +VG NVGKSTLFN ++ ++ + ++R T W G T L+
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV 54
>sp|Q1IXB4|ERA_DEIGD GTPase Era OS=Deinococcus geothermalis (strain DSM 11300) GN=era
PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+ AG V +VG NVGKSTL NAFL + + A TSP P TT ++ I
Sbjct: 15 THAGFVAIVGKPNVGKSTLLNAFLNTKV-----------APTSPRPQTTRRGVRGIYSTD 63
Query: 90 T 90
T
Sbjct: 64 T 64
>sp|A5IMD9|DER_THEP1 GTPase Der OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=der PE=3 SV=1
Length = 439
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 20/82 (24%)
Query: 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLI 66
LE + + L ++PE ++ A V +VG NVGKSTLFNA L +
Sbjct: 164 LEEKGLDLESKPE---------ITDAIKVAIVGRPNVGKSTLFNAILNKE---------- 204
Query: 67 SRATTSPWPGTTLNLLKEIIKI 88
RA SP PGTT + + E + I
Sbjct: 205 -RALVSPIPGTTRDPVDEEVFI 225
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISR---ATTSPWPGTTLNLL 82
V +VG NVGKSTLFN ++ ++ + ++R T W G T L+
Sbjct: 4 VLIVGKPNVGKSTLFNKLVRKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLV 54
>sp|Q02A42|MNME_SOLUE tRNA modification GTPase MnmE OS=Solibacter usitatus (strain
Ellin6076) GN=mnmE PE=3 SV=1
Length = 444
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 17/86 (19%)
Query: 3 LWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA 62
L P LEG E + + +V L L+ +VG NVGKS+LFN L+ D
Sbjct: 193 LSPVLEGTERLAASFQYGGLVHQGLTLA------IVGRPNVGKSSLFNRLLEQD------ 240
Query: 63 SDLISRATTSPWPGTTLNLLKEIIKI 88
RA + PGTT +++ E I
Sbjct: 241 -----RAIVTEIPGTTRDVVSETAAI 261
>sp|A4J9S1|MNME_DESRM tRNA modification GTPase MnmE OS=Desulfotomaculum reducens (strain
MI-1) GN=mnmE PE=3 SV=1
Length = 461
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 18/72 (25%)
Query: 27 LVLSSAGDVY-------LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTL 79
L + G +Y +VG NVGKS+L NA L RA + PGTT
Sbjct: 210 LAYADTGKIYREGLKTVIVGKPNVGKSSLLNALLHE-----------QRAIVTDIPGTTR 258
Query: 80 NLLKEIIKIQTV 91
++++EI+ I+ V
Sbjct: 259 DVIEEILSIKGV 270
>sp|Q899S2|MNME_CLOTE tRNA modification GTPase MnmE OS=Clostridium tetani (strain
Massachusetts / E88) GN=mnmE PE=3 SV=1
Length = 459
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTV 91
DV +VG NVGKS+L NA L RA + PGTT ++++E I + +
Sbjct: 225 DVVIVGKPNVGKSSLLNALLSE-----------KRAIVTEIPGTTRDVIEEYINLDGI 271
>sp|Q85FG3|MNME_CYAME Probable tRNA modification GTPase mnmE OS=Cyanidioschyzon merolae
GN=mnmE PE=3 SV=1
Length = 446
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 13/84 (15%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVC-- 92
V L+G N GKSTLFNA + + R+ +P GTT ++++ ++ Q +C
Sbjct: 221 VALLGPANAGKSTLFNALIGEE-----------RSIVTPIAGTTTDVVEATLQWQQICFR 269
Query: 93 KVKELGKKILLSQVKGKNMSKTEK 116
G K S+++ K M+K ++
Sbjct: 270 FFDTAGLKEASSEIETKAMAKAQQ 293
>sp|Q73KN7|MNME_TREDE tRNA modification GTPase MnmE OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=mnmE PE=3 SV=1
Length = 472
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNL 81
+A+ + V L G TN GKS+LFNA L+ D + SD+ TT W +LN
Sbjct: 217 AAEKIFIQGAKVVLAGKTNAGKSSLFNALLKEDRAIV--SDI--HGTTRDWLEASLNF 270
>sp|Q9RWM0|ERA_DEIRA GTPase Era OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279
/ R1 / VKM B-1422) GN=era PE=3 SV=1
Length = 311
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 11/61 (18%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+ AG V +VG NVGKSTL NAFL + + A TSP P TT ++ I +
Sbjct: 15 THAGFVAIVGKPNVGKSTLLNAFLGTKV-----------APTSPRPQTTRRGVRGIYTLD 63
Query: 90 T 90
Sbjct: 64 N 64
>sp|A8F732|MNME_THELT tRNA modification GTPase MnmE OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=mnmE PE=3 SV=1
Length = 450
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 11/57 (19%)
Query: 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
L+LSS V ++G NVGKSTL N ++ + RA + PGTT +L++
Sbjct: 208 LILSSGIKVVIIGKPNVGKSTLLNTLVKEE-----------RAIVTDIPGTTRDLIE 253
>sp|Q746Q3|MNME_GEOSL tRNA modification GTPase MnmE OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=mnmE PE=3 SV=1
Length = 456
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
VL V + G NVGKS+L N LQ RA + PGTT ++++E++
Sbjct: 216 VLREGVAVLIAGKPNVGKSSLLNTLLQE-----------KRAIVTSVPGTTRDIIEEVVN 264
Query: 88 IQ 89
I+
Sbjct: 265 IR 266
>sp|B1L9N6|MNME_THESQ tRNA modification GTPase MnmE OS=Thermotoga sp. (strain RQ2)
GN=mnmE PE=3 SV=1
Length = 450
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
A ++L+ + +VG NVGKSTL N L D RA + PGTT +++
Sbjct: 203 DAGILLNRGLRMVIVGKPNVGKSTLLNRLLNED-----------RAIVTDIPGTTRDVIS 251
Query: 84 EIIKIQTV 91
E I I+ +
Sbjct: 252 EEIVIRGI 259
>sp|A6M3M5|MNME_CLOB8 tRNA modification GTPase MnmE OS=Clostridium beijerinckii (strain
ATCC 51743 / NCIMB 8052) GN=mnmE PE=3 SV=1
Length = 462
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 11/58 (18%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTV 91
++ +VG NVGKS+L NA L+ +RA + PGTT ++++E I + +
Sbjct: 229 NIVIVGKPNVGKSSLLNALLRE-----------NRAIVTDVPGTTRDIIEEYINLDGI 275
>sp|Q39PQ9|MNME_GEOMG tRNA modification GTPase MnmE OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=mnmE PE=3 SV=1
Length = 457
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
VL V + G NVGKS+L N LQ RA + PGTT ++++E++
Sbjct: 217 VLRDGVSVLIAGKPNVGKSSLLNTLLQE-----------KRAIVTSVPGTTRDIIEEVVN 265
Query: 88 IQ 89
++
Sbjct: 266 VR 267
>sp|C1CXC1|ERA_DEIDV GTPase Era OS=Deinococcus deserti (strain VCD115 / DSM 17065 /
LMG 22923) GN=era PE=3 SV=1
Length = 307
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
+++D + +G V +VG NVGKSTL N+FL + + A TSP P TT +
Sbjct: 6 MTSDGATTHSGFVAIVGKPNVGKSTLLNSFLGTKV-----------APTSPRPQTTRRGV 54
Query: 83 KEIIKIQT 90
+ I T
Sbjct: 55 RGISTTDT 62
>sp|B2S3E2|MNME_TREPS tRNA modification GTPase MnmE OS=Treponema pallidum subsp. pallidum
(strain SS14) GN=mnmE PE=3 SV=1
Length = 495
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
+ L GC N GKS+LFNA L D RA S PGTT + L+
Sbjct: 226 IVLGGCPNAGKSSLFNALLGQD-----------RAIVSSVPGTTRDWLE 263
>sp|O83561|MNME_TREPA tRNA modification GTPase MnmE OS=Treponema pallidum (strain
Nichols) GN=mnmE PE=3 SV=1
Length = 495
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
+ L GC N GKS+LFNA L D RA S PGTT + L+
Sbjct: 226 IVLGGCPNAGKSSLFNALLGQD-----------RAIVSSVPGTTRDWLE 263
>sp|Q7NHT3|MNME_GLOVI tRNA modification GTPase MnmE OS=Gloeobacter violaceus (strain PCC
7421) GN=mnmE PE=3 SV=1
Length = 453
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 11/64 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
+L + V +VG NVGKS+L NA+ ++D RA + PGTT ++++ ++
Sbjct: 214 LLRTGLKVAIVGRPNVGKSSLLNAWSRTD-----------RAIVTDLPGTTRDVVESMLN 262
Query: 88 IQTV 91
+Q +
Sbjct: 263 VQGI 266
>sp|A5G9V3|MNME_GEOUR tRNA modification GTPase MnmE OS=Geobacter uraniireducens (strain
Rf4) GN=mnmE PE=3 SV=1
Length = 455
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
VL V + G NVGKS+L N L+ RA + PGTT +L++E++
Sbjct: 216 VLRDGVSVVIAGKPNVGKSSLLNTLLRE-----------KRAIVTSVPGTTRDLIEEVVT 264
Query: 88 IQ 89
I+
Sbjct: 265 IK 266
>sp|A7NN19|MNME_ROSCS tRNA modification GTPase MnmE OS=Roseiflexus castenholzii (strain
DSM 13941 / HLO8) GN=mnmE PE=3 SV=1
Length = 464
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKE 84
LVG N GKS+L NA L+ I RA +P PGTT + L+E
Sbjct: 221 LVGRPNAGKSSLLNALLR-----------IDRAIVTPIPGTTRDTLEE 257
>sp|B7IE34|DER_THEAB GTPase Der OS=Thermosipho africanus (strain TCF52B) GN=der PE=3
SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKV 94
V +G N GKSTLFN+ L + R +P PGTT + + E++ I
Sbjct: 184 VSFIGRPNAGKSTLFNSILNKE-----------RVLVTPIPGTTRDSVDELVTIN----- 227
Query: 95 KELGKKILLSQVKG-KNMSKTEKKPL 119
G+K L G + SK + K L
Sbjct: 228 ---GRKYLFVDTAGLRRKSKVDYKSL 250
>sp|A5CY46|MNME_PELTS tRNA modification GTPase MnmE OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=mnmE PE=3 SV=1
Length = 459
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 18/69 (26%)
Query: 30 SSAGDVY-------LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
+ AG +Y ++G NVGKS+L NA L+ + RA + PGTT +++
Sbjct: 211 AEAGKIYREGISTVIIGRPNVGKSSLLNALLREN-----------RAIVTDIPGTTRDII 259
Query: 83 KEIIKIQTV 91
+E I I+ +
Sbjct: 260 EEYINIRGI 268
>sp|A5UY19|MNME_ROSS1 tRNA modification GTPase MnmE OS=Roseiflexus sp. (strain RS-1)
GN=mnmE PE=3 SV=2
Length = 461
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKE 84
L+G N GKS+L NA L+ D RA +P PGTT + L+E
Sbjct: 221 LIGRPNAGKSSLLNALLRVD-----------RAIVTPIPGTTRDTLEE 257
>sp|B0S3V2|MNME_FINM2 tRNA modification GTPase MnmE OS=Finegoldia magna (strain ATCC
29328) GN=mnmE PE=3 SV=1
Length = 452
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLIS 67
EG+EV+ + + ++ + ++G NVGKS+L NA L+ +
Sbjct: 193 EGKEVLDKLKKLSESANRGRIIRDGINTTIIGKPNVGKSSLLNALLKEN----------- 241
Query: 68 RATTSPWPGTTLNLLKEIIKIQTV 91
RA + PGTT ++++E I + +
Sbjct: 242 RAIVTDIPGTTRDVIEEYIDLDGI 265
>sp|Q58728|Y1332_METJA Uncharacterized GTP-binding protein MJ1332 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1332 PE=3 SV=1
Length = 393
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKE 96
LVG NVGKST+FNA + A +P TT+ K I I + C KE
Sbjct: 6 LVGKPNVGKSTMFNALTEKP------------AEIGNYPFTTIQPNKGIAYITSPCPCKE 53
Query: 97 LGKK 100
LG K
Sbjct: 54 LGVK 57
>sp|Q879S5|MNME_XYLFT tRNA modification GTPase MnmE OS=Xylella fastidiosa (strain
Temecula1 / ATCC 700964) GN=mnmE PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
LVG NVGKS+L NA + SD RA + PGTT + L+E +
Sbjct: 225 LVGPPNVGKSSLLNALIGSD-----------RAIVTDVPGTTRDTLRESV 263
>sp|Q1LH94|MNME_RALME tRNA modification GTPase MnmE OS=Ralstonia metallidurans (strain
CH34 / ATCC 43123 / DSM 2839) GN=mnmE PE=3 SV=1
Length = 475
Score = 35.8 bits (81), Expect = 0.085, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTV 91
V L G NVGKS+L NA SDL A +P GTT + ++E I+I +
Sbjct: 223 VVLAGQPNVGKSSLLNALAGSDL-----------AIVTPIAGTTRDRVRETIQIDGI 268
>sp|Q9P9U3|MNME_XYLFA tRNA modification GTPase MnmE OS=Xylella fastidiosa (strain 9a5c)
GN=mnmE PE=3 SV=1
Length = 451
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86
LVG NVGKS+L NA + SD RA + PGTT + L+E +
Sbjct: 225 LVGPPNVGKSSLLNALIGSD-----------RAIVTDVPGTTRDTLRESV 263
>sp|B1I6S2|MNME_DESAP tRNA modification GTPase MnmE OS=Desulforudis audaxviator (strain
MP104C) GN=mnmE PE=3 SV=1
Length = 461
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 30 SSAGDVY-------LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
+ AG VY +VG NVGKS+L NA L+ RA + PGTT +++
Sbjct: 214 AEAGRVYRDGLGVAIVGKPNVGKSSLLNALLRE-----------KRAIVTDVPGTTRDVI 262
Query: 83 KEIIKIQ 89
+E + I+
Sbjct: 263 EETVNIR 269
>sp|Q44633|MNME_BUCAP tRNA modification GTPase MnmE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mnmE PE=3 SV=1
Length = 456
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN 80
NIVS ++ A + +VG N GKS+L N D RA + PGTT +
Sbjct: 207 NIVSEGSLIREAKRIVIVGPPNAGKSSLLNVLSCRD-----------RAIVTDLPGTTRD 255
Query: 81 LLKEIIKIQTV-CKV 94
+L E I I + C++
Sbjct: 256 VLYENINIHGISCEI 270
>sp|Q8F6K1|DER_LEPIN GTPase Der OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=der
PE=3 SV=1
Length = 489
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
V +VG NVGKSTLFN+ L+ L A T +PG T ++L
Sbjct: 32 VSIVGRQNVGKSTLFNSLLKKKL-----------AITEDYPGVTRDVL 68
>sp|Q72PQ1|DER_LEPIC GTPase Der OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=der PE=3 SV=1
Length = 489
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
V +VG NVGKSTLFN+ L+ L A T +PG T ++L
Sbjct: 32 VSIVGRQNVGKSTLFNSLLKKKL-----------AITEDYPGVTRDVL 68
>sp|Q662I5|MNME_BORGA tRNA modification GTPase MnmE OS=Borrelia garinii (strain PBi)
GN=mnmE PE=3 SV=1
Length = 464
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTV 91
L G N GKS+LFN FL+ D R+ S +PGTT + ++ ++ +
Sbjct: 227 LAGSVNAGKSSLFNMFLKKD-----------RSIVSSYPGTTRDYIEATFELDGI 270
>sp|A0PX77|MNME_CLONN tRNA modification GTPase MnmE OS=Clostridium novyi (strain NT)
GN=mnmE PE=3 SV=1
Length = 459
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 11/64 (17%)
Query: 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87
+L + +VG NVGKS+L NA L +RA + PGTT ++++E +
Sbjct: 219 ILREGLNTVIVGKPNVGKSSLLNALLME-----------TRAIVTDVPGTTRDVIEEYMS 267
Query: 88 IQTV 91
I +
Sbjct: 268 IDGI 271
>sp|Q04ZS1|DER_LEPBL GTPase Der OS=Leptospira borgpetersenii serovar Hardjo-bovis
(strain L550) GN=der PE=3 SV=1
Length = 487
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLL 82
V +VG NVGKSTLFN+ L+ L A T +PG T ++L
Sbjct: 30 VSIVGRQNVGKSTLFNSLLKKKL-----------AITEDYPGVTRDVL 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,172,164
Number of Sequences: 539616
Number of extensions: 1425055
Number of successful extensions: 9241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 8987
Number of HSP's gapped (non-prelim): 578
length of query: 127
length of database: 191,569,459
effective HSP length: 93
effective length of query: 34
effective length of database: 141,385,171
effective search space: 4807095814
effective search space used: 4807095814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)