Query psy18211
Match_columns 127
No_of_seqs 162 out of 1037
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 16:35:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 5.5E-38 1.2E-42 220.9 10.5 123 5-127 1-153 (240)
2 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-36 2.5E-41 218.3 9.3 123 5-127 2-147 (248)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.2E-36 6.9E-41 217.8 10.9 123 4-127 2-156 (254)
4 COG3839 MalK ABC-type sugar tr 100.0 4.4E-36 9.6E-41 224.9 11.8 122 5-127 2-150 (338)
5 COG1120 FepC ABC-type cobalami 100.0 6.9E-36 1.5E-40 216.8 9.9 121 6-127 2-155 (258)
6 COG3842 PotA ABC-type spermidi 100.0 1.5E-35 3.2E-40 223.1 11.0 122 5-126 4-152 (352)
7 COG1136 SalX ABC-type antimicr 100.0 5.3E-35 1.1E-39 208.7 10.7 122 6-127 1-159 (226)
8 COG3638 ABC-type phosphate/pho 100.0 1.1E-34 2.3E-39 206.5 10.8 122 5-127 2-164 (258)
9 COG1135 AbcC ABC-type metal io 100.0 2E-34 4.3E-39 211.8 10.6 121 6-126 1-157 (339)
10 COG2884 FtsE Predicted ATPase 100.0 1.2E-34 2.6E-39 200.6 8.8 122 6-127 1-154 (223)
11 COG1125 OpuBA ABC-type proline 100.0 5.7E-34 1.2E-38 204.9 9.8 121 6-126 1-151 (309)
12 COG1117 PstB ABC-type phosphat 100.0 3.2E-33 6.9E-38 196.7 10.8 122 4-126 5-165 (253)
13 PRK11432 fbpC ferric transport 100.0 8.5E-33 1.8E-37 209.7 12.9 127 1-127 1-153 (351)
14 PRK11650 ugpC glycerol-3-phosp 100.0 1.9E-32 4.2E-37 208.2 11.8 122 5-127 2-151 (356)
15 COG0410 LivF ABC-type branched 100.0 1.3E-32 2.9E-37 195.2 10.0 123 5-127 2-153 (237)
16 COG1124 DppF ABC-type dipeptid 100.0 2.1E-32 4.6E-37 195.4 10.7 122 5-126 2-157 (252)
17 COG1118 CysA ABC-type sulfate/ 100.0 7.8E-33 1.7E-37 203.2 8.7 121 6-126 2-153 (345)
18 COG1137 YhbG ABC-type (unclass 100.0 1.8E-33 4E-38 196.2 4.6 123 4-126 2-155 (243)
19 COG1131 CcmA ABC-type multidru 100.0 4.8E-32 1E-36 201.4 12.0 123 5-127 3-153 (293)
20 TIGR03265 PhnT2 putative 2-ami 100.0 3.6E-32 7.8E-37 206.5 11.3 123 5-127 3-151 (353)
21 PRK13537 nodulation ABC transp 100.0 1.2E-31 2.7E-36 200.2 11.5 123 5-127 6-155 (306)
22 COG1127 Ttg2A ABC-type transpo 100.0 6.7E-32 1.5E-36 192.6 9.6 123 4-126 6-161 (263)
23 PRK09452 potA putrescine/sperm 100.0 1.2E-31 2.6E-36 204.9 11.7 124 4-127 12-161 (375)
24 PRK09536 btuD corrinoid ABC tr 100.0 2.2E-31 4.8E-36 204.8 11.5 123 5-127 2-156 (402)
25 PRK13536 nodulation factor exp 100.0 2.7E-31 5.9E-36 200.8 11.6 123 5-127 40-189 (340)
26 PRK11000 maltose/maltodextrin 100.0 4.2E-31 9E-36 201.7 12.6 123 5-127 2-150 (369)
27 COG4559 ABC-type hemin transpo 100.0 1.3E-31 2.7E-36 188.5 8.9 122 6-127 1-152 (259)
28 TIGR02314 ABC_MetN D-methionin 100.0 2.4E-31 5.2E-36 201.2 10.9 122 6-127 1-157 (343)
29 PRK11247 ssuB aliphatic sulfon 100.0 7.3E-31 1.6E-35 191.9 11.7 122 5-127 11-150 (257)
30 PRK11607 potG putrescine trans 100.0 5.3E-31 1.2E-35 201.5 11.4 124 4-127 17-166 (377)
31 TIGR00960 3a0501s02 Type II (G 100.0 6.5E-31 1.4E-35 187.1 11.1 122 6-127 1-155 (216)
32 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-31 2.7E-36 187.2 7.2 121 6-127 1-150 (245)
33 TIGR03258 PhnT 2-aminoethylpho 100.0 5.5E-31 1.2E-35 200.5 11.0 122 6-127 5-154 (362)
34 PRK10851 sulfate/thiosulfate t 100.0 7.3E-31 1.6E-35 199.3 11.1 122 6-127 2-153 (353)
35 cd03259 ABC_Carb_Solutes_like 100.0 6.9E-31 1.5E-35 186.6 10.1 121 7-127 1-147 (213)
36 TIGR01288 nodI ATP-binding ABC 100.0 1.1E-30 2.5E-35 194.7 11.4 123 5-127 3-152 (303)
37 PRK10584 putative ABC transpor 100.0 2E-30 4.3E-35 185.9 12.0 127 1-127 1-163 (228)
38 PRK14247 phosphate ABC transpo 100.0 2.3E-30 5.1E-35 187.9 12.4 123 5-127 2-163 (250)
39 cd03261 ABC_Org_Solvent_Resist 100.0 1.1E-30 2.3E-35 188.2 10.5 121 7-127 1-153 (235)
40 PRK11614 livF leucine/isoleuci 100.0 2.6E-30 5.7E-35 186.4 12.2 126 1-127 1-154 (237)
41 PRK11629 lolD lipoprotein tran 100.0 2.3E-30 5.1E-35 186.3 11.6 126 1-127 1-162 (233)
42 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-30 3.8E-35 185.4 10.7 121 7-127 1-148 (220)
43 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.2E-30 4.7E-35 185.0 11.1 121 7-127 1-148 (220)
44 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.9E-30 4.2E-35 184.8 10.7 121 7-127 1-157 (218)
45 cd03266 ABC_NatA_sodium_export 100.0 2.7E-30 5.8E-35 184.1 11.0 121 6-127 1-153 (218)
46 PRK13538 cytochrome c biogenes 100.0 3.4E-30 7.3E-35 182.3 11.4 121 6-127 1-146 (204)
47 TIGR02673 FtsE cell division A 100.0 2.8E-30 6E-35 183.6 11.0 122 6-127 1-154 (214)
48 COG4525 TauB ABC-type taurine 100.0 2.2E-30 4.8E-35 180.6 10.2 122 5-126 2-148 (259)
49 PRK11248 tauB taurine transpor 100.0 3.5E-30 7.6E-35 188.0 11.5 122 6-127 1-145 (255)
50 PRK11153 metN DL-methionine tr 100.0 2.8E-30 6.1E-35 195.5 11.2 122 6-127 1-157 (343)
51 cd03296 ABC_CysA_sulfate_impor 100.0 3.5E-30 7.5E-35 186.0 11.1 122 6-127 2-153 (239)
52 cd03231 ABC_CcmA_heme_exporter 100.0 3.4E-30 7.4E-35 182.0 10.8 120 7-127 1-142 (201)
53 cd03269 ABC_putative_ATPase Th 100.0 3.4E-30 7.5E-35 182.7 10.7 121 7-127 1-145 (210)
54 TIGR02868 CydC thiol reductant 100.0 1.8E-30 3.8E-35 205.6 10.2 121 6-127 334-487 (529)
55 cd03301 ABC_MalK_N The N-termi 100.0 4E-30 8.7E-35 182.6 11.0 121 7-127 1-147 (213)
56 cd03224 ABC_TM1139_LivF_branch 100.0 4.9E-30 1.1E-34 183.1 11.3 121 7-127 1-149 (222)
57 PRK13540 cytochrome c biogenes 100.0 5.3E-30 1.1E-34 180.8 11.1 121 6-127 1-144 (200)
58 cd03235 ABC_Metallic_Cations A 100.0 3.8E-30 8.2E-35 182.8 10.4 120 8-127 1-149 (213)
59 TIGR03522 GldA_ABC_ATP gliding 100.0 4.1E-30 8.9E-35 191.5 10.9 122 6-127 2-150 (301)
60 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.6E-30 9.9E-35 185.1 10.8 122 6-127 1-149 (236)
61 PRK10247 putative ABC transpor 100.0 7.1E-30 1.5E-34 183.1 11.7 123 4-127 5-154 (225)
62 PRK11831 putative ABC transpor 100.0 6E-30 1.3E-34 187.9 11.5 123 4-127 5-160 (269)
63 PRK10908 cell division protein 100.0 6.6E-30 1.4E-34 182.7 11.4 122 6-127 1-154 (222)
64 PRK11264 putative amino-acid A 100.0 5.6E-30 1.2E-34 185.8 11.2 123 5-127 2-161 (250)
65 cd03268 ABC_BcrA_bacitracin_re 100.0 4.9E-30 1.1E-34 181.7 10.6 120 7-127 1-143 (208)
66 TIGR02315 ABC_phnC phosphonate 100.0 5.4E-30 1.2E-34 185.1 11.0 122 6-127 1-162 (243)
67 PRK14242 phosphate transporter 100.0 1.3E-29 2.8E-34 184.3 13.0 126 1-127 1-166 (253)
68 PRK13548 hmuV hemin importer A 100.0 8E-30 1.7E-34 186.2 11.9 121 6-126 2-150 (258)
69 cd03226 ABC_cobalt_CbiO_domain 100.0 4E-30 8.7E-35 181.9 9.9 119 8-127 1-143 (205)
70 cd03219 ABC_Mj1267_LivG_branch 100.0 4.2E-30 9E-35 185.0 10.1 121 7-127 1-160 (236)
71 PRK10895 lipopolysaccharide AB 100.0 5.7E-30 1.2E-34 185.0 10.8 123 5-127 2-154 (241)
72 cd03258 ABC_MetN_methionine_tr 100.0 6.8E-30 1.5E-34 183.7 11.1 122 6-127 1-157 (233)
73 TIGR03411 urea_trans_UrtD urea 100.0 6.4E-30 1.4E-34 184.8 11.0 123 5-127 1-160 (242)
74 cd03260 ABC_PstB_phosphate_tra 100.0 5.4E-30 1.2E-34 183.6 10.5 120 7-127 1-158 (227)
75 cd03263 ABC_subfamily_A The AB 100.0 6.6E-30 1.4E-34 182.3 10.8 121 7-127 1-150 (220)
76 TIGR03410 urea_trans_UrtE urea 100.0 8.9E-30 1.9E-34 182.8 11.5 121 7-127 1-148 (230)
77 TIGR02211 LolD_lipo_ex lipopro 100.0 9.2E-30 2E-34 181.7 11.3 122 6-127 1-158 (221)
78 cd03218 ABC_YhbG The ABC trans 100.0 6.8E-30 1.5E-34 183.5 10.6 121 7-127 1-150 (232)
79 cd03225 ABC_cobalt_CbiO_domain 100.0 7.3E-30 1.6E-34 181.0 10.6 119 8-127 1-151 (211)
80 PRK14273 phosphate ABC transpo 100.0 1.9E-29 4.1E-34 183.6 12.9 123 4-127 5-167 (254)
81 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-29 2.9E-34 179.8 11.8 121 7-127 1-152 (213)
82 cd03295 ABC_OpuCA_Osmoprotecti 100.0 7.1E-30 1.5E-34 184.7 10.5 121 7-127 1-152 (242)
83 PRK14261 phosphate ABC transpo 100.0 2.2E-29 4.9E-34 183.1 12.6 126 1-127 1-166 (253)
84 PRK14250 phosphate ABC transpo 100.0 1.1E-29 2.4E-34 183.8 10.8 121 6-127 3-148 (241)
85 PRK14239 phosphate transporter 100.0 3E-29 6.5E-34 182.2 13.0 125 1-127 1-165 (252)
86 PRK11300 livG leucine/isoleuci 100.0 1.6E-29 3.5E-34 183.9 11.6 125 1-127 1-170 (255)
87 PRK13636 cbiO cobalt transport 100.0 1.8E-29 3.8E-34 186.7 11.9 126 1-127 1-158 (283)
88 PRK09493 glnQ glutamine ABC tr 100.0 1.6E-29 3.4E-34 182.6 11.2 122 6-127 1-153 (240)
89 PRK14267 phosphate ABC transpo 100.0 2.7E-29 5.9E-34 182.6 12.5 123 5-127 3-166 (253)
90 PRK14241 phosphate transporter 100.0 2.8E-29 6.1E-34 183.2 12.6 122 6-127 4-165 (258)
91 PRK13647 cbiO cobalt transport 100.0 1.7E-29 3.7E-34 186.0 11.4 122 6-127 4-155 (274)
92 PRK13637 cbiO cobalt transport 100.0 2.9E-29 6.2E-34 185.9 12.7 122 6-127 2-161 (287)
93 cd03256 ABC_PhnC_transporter A 100.0 1.6E-29 3.5E-34 182.3 11.0 121 7-127 1-161 (241)
94 PRK10744 pstB phosphate transp 100.0 2.2E-29 4.8E-34 184.0 11.8 122 5-127 12-173 (260)
95 cd03292 ABC_FtsE_transporter F 100.0 2E-29 4.3E-34 179.0 11.3 121 7-127 1-153 (214)
96 cd03257 ABC_NikE_OppD_transpor 100.0 1.7E-29 3.7E-34 180.8 11.0 122 6-127 1-162 (228)
97 PRK10575 iron-hydroxamate tran 100.0 2.3E-29 5.1E-34 184.4 11.8 123 5-127 10-164 (265)
98 KOG0058|consensus 100.0 6.7E-30 1.4E-34 203.7 9.6 121 6-127 465-621 (716)
99 COG1122 CbiO ABC-type cobalt t 100.0 2.9E-29 6.3E-34 181.1 12.1 123 5-127 2-155 (235)
100 TIGR00972 3a0107s01c2 phosphat 100.0 3E-29 6.4E-34 182.0 12.2 121 6-127 1-161 (247)
101 COG0411 LivG ABC-type branched 100.0 3.8E-30 8.3E-35 183.9 7.1 122 5-126 3-165 (250)
102 PRK13539 cytochrome c biogenes 100.0 2.7E-29 5.8E-34 178.1 11.3 121 6-127 2-144 (207)
103 KOG0057|consensus 100.0 9.8E-30 2.1E-34 197.8 9.8 121 6-127 351-504 (591)
104 PRK14274 phosphate ABC transpo 100.0 4.6E-29 1E-33 182.1 12.7 122 5-127 11-172 (259)
105 PRK10619 histidine/lysine/argi 100.0 2.7E-29 5.9E-34 183.1 11.5 123 5-127 4-169 (257)
106 PRK11231 fecE iron-dicitrate t 100.0 2.7E-29 5.7E-34 183.0 11.4 122 6-127 2-155 (255)
107 PRK11819 putative ABC transpor 100.0 1.8E-29 3.9E-34 201.2 11.4 81 5-85 5-94 (556)
108 PRK14268 phosphate ABC transpo 100.0 4E-29 8.8E-34 182.4 12.3 123 4-127 10-171 (258)
109 PRK14272 phosphate ABC transpo 100.0 4E-29 8.8E-34 181.5 12.3 125 1-127 1-165 (252)
110 PRK10253 iron-enterobactin tra 100.0 3.4E-29 7.4E-34 183.5 11.9 124 4-127 5-160 (265)
111 TIGR01189 ccmA heme ABC export 100.0 2.3E-29 4.9E-34 177.2 10.6 120 7-127 1-144 (198)
112 PRK13543 cytochrome c biogenes 100.0 3.4E-29 7.3E-34 178.4 11.4 123 5-127 10-154 (214)
113 COG3840 ThiQ ABC-type thiamine 100.0 1.1E-29 2.3E-34 175.4 8.3 119 6-127 1-146 (231)
114 PRK14245 phosphate ABC transpo 100.0 5.2E-29 1.1E-33 180.9 12.4 122 5-127 2-163 (250)
115 PRK13644 cbiO cobalt transport 100.0 3.5E-29 7.5E-34 184.4 11.5 122 6-127 1-153 (274)
116 PRK13634 cbiO cobalt transport 100.0 3.3E-29 7.2E-34 185.8 11.4 122 6-127 2-162 (290)
117 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-29 4.9E-34 198.9 11.1 124 4-127 9-157 (510)
118 PRK15079 oligopeptide ABC tran 100.0 3.4E-29 7.3E-34 188.9 11.5 124 4-127 6-178 (331)
119 PRK13632 cbiO cobalt transport 100.0 4.4E-29 9.5E-34 183.5 11.7 124 4-127 5-159 (271)
120 PRK11701 phnK phosphonate C-P 100.0 6.5E-29 1.4E-33 181.3 12.5 124 4-127 4-168 (258)
121 PRK13641 cbiO cobalt transport 100.0 4.4E-29 9.5E-34 184.9 11.7 122 6-127 2-162 (287)
122 PRK11124 artP arginine transpo 100.0 4.1E-29 8.8E-34 180.7 11.3 121 6-127 2-158 (242)
123 PRK13651 cobalt transporter AT 100.0 3.6E-29 7.7E-34 186.9 11.3 122 6-127 2-182 (305)
124 TIGR02324 CP_lyasePhnL phospho 100.0 4.6E-29 9.9E-34 178.5 11.4 122 6-127 1-166 (224)
125 PRK13635 cbiO cobalt transport 100.0 4.9E-29 1.1E-33 184.1 11.8 123 5-127 4-157 (279)
126 PRK09984 phosphonate/organopho 100.0 3.5E-29 7.6E-34 183.0 11.0 123 5-127 3-169 (262)
127 PRK14269 phosphate ABC transpo 100.0 5.5E-29 1.2E-33 180.5 11.9 121 6-127 2-159 (246)
128 TIGR01978 sufC FeS assembly AT 100.0 3.7E-29 8.1E-34 180.7 10.8 121 7-127 1-161 (243)
129 COG2274 SunT ABC-type bacterio 100.0 1.6E-29 3.6E-34 205.0 9.9 121 6-127 471-626 (709)
130 cd03264 ABC_drug_resistance_li 100.0 3.3E-29 7.1E-34 177.8 10.3 120 7-127 1-147 (211)
131 PRK13652 cbiO cobalt transport 100.0 6.4E-29 1.4E-33 183.2 12.2 123 5-127 2-154 (277)
132 PRK13650 cbiO cobalt transport 100.0 4.8E-29 1E-33 184.0 11.5 122 5-127 3-157 (279)
133 TIGR03608 L_ocin_972_ABC putat 100.0 3.9E-29 8.5E-34 176.6 10.4 119 9-127 1-151 (206)
134 PRK14248 phosphate ABC transpo 100.0 9.8E-29 2.1E-33 181.3 12.8 123 4-127 19-181 (268)
135 PRK14240 phosphate transporter 100.0 1E-28 2.3E-33 179.3 12.8 121 6-127 3-163 (250)
136 PRK13646 cbiO cobalt transport 100.0 5.2E-29 1.1E-33 184.5 11.2 122 6-127 2-162 (286)
137 PRK13648 cbiO cobalt transport 100.0 7.5E-29 1.6E-33 182.0 11.9 127 1-127 1-159 (269)
138 PRK14270 phosphate ABC transpo 100.0 9.2E-29 2E-33 179.7 12.3 122 5-127 3-164 (251)
139 PRK14256 phosphate ABC transpo 100.0 1.2E-28 2.7E-33 179.2 12.9 122 6-127 4-165 (252)
140 PRK13643 cbiO cobalt transport 100.0 6.5E-29 1.4E-33 184.1 11.5 122 6-127 1-161 (288)
141 TIGR03005 ectoine_ehuA ectoine 100.0 6.3E-29 1.4E-33 180.7 11.2 121 7-127 1-163 (252)
142 PRK14259 phosphate ABC transpo 100.0 7.3E-29 1.6E-33 182.2 11.6 123 4-127 11-171 (269)
143 PRK14262 phosphate ABC transpo 100.0 1.2E-28 2.5E-33 179.0 12.4 122 5-127 2-163 (250)
144 PRK11308 dppF dipeptide transp 100.0 8.5E-29 1.8E-33 186.4 12.0 124 4-127 3-171 (327)
145 PRK10070 glycine betaine trans 100.0 7.1E-29 1.5E-33 190.9 11.8 123 5-127 3-181 (400)
146 PRK13640 cbiO cobalt transport 100.0 8.5E-29 1.8E-33 183.0 11.8 123 5-127 4-160 (282)
147 PRK13547 hmuV hemin importer A 100.0 5.5E-29 1.2E-33 183.3 10.7 121 6-126 1-161 (272)
148 PRK13631 cbiO cobalt transport 100.0 8.7E-29 1.9E-33 185.9 11.9 123 5-127 20-193 (320)
149 PRK13549 xylose transporter AT 100.0 3.1E-29 6.7E-34 197.9 9.9 123 5-127 4-160 (506)
150 PRK15112 antimicrobial peptide 100.0 7.4E-29 1.6E-33 181.9 11.3 123 5-127 3-166 (267)
151 PRK13638 cbiO cobalt transport 100.0 7.9E-29 1.7E-33 182.1 11.3 122 6-127 1-153 (271)
152 PRK14235 phosphate transporter 100.0 1.3E-28 2.8E-33 180.6 12.4 123 4-127 17-180 (267)
153 COG1132 MdlB ABC-type multidru 100.0 3.3E-29 7.1E-34 199.9 10.0 121 6-127 328-482 (567)
154 PRK13541 cytochrome c biogenes 100.0 8.4E-29 1.8E-33 174.1 10.9 120 6-127 1-140 (195)
155 PRK11174 cysteine/glutathione 100.0 3.8E-29 8.2E-34 200.1 10.4 121 6-127 349-502 (588)
156 PRK09700 D-allose transporter 100.0 4.8E-29 1.1E-33 196.9 10.6 123 5-127 4-162 (510)
157 PRK10762 D-ribose transporter 100.0 3.4E-29 7.3E-34 197.4 9.7 123 5-127 3-158 (501)
158 PRK14249 phosphate ABC transpo 100.0 1.8E-28 3.8E-33 178.3 12.7 122 5-127 3-164 (251)
159 PRK14255 phosphate ABC transpo 100.0 1.8E-28 3.9E-33 178.2 12.6 123 4-127 3-165 (252)
160 PRK09544 znuC high-affinity zi 100.0 7.7E-29 1.7E-33 180.6 10.7 122 5-127 3-137 (251)
161 TIGR02769 nickel_nikE nickel i 100.0 9.1E-29 2E-33 181.2 11.1 122 6-127 2-167 (265)
162 PRK15093 antimicrobial peptide 100.0 1.3E-28 2.8E-33 185.6 12.2 123 5-127 2-175 (330)
163 PRK15064 ABC transporter ATP-b 100.0 6.8E-29 1.5E-33 196.8 11.2 122 6-127 1-172 (530)
164 PRK11144 modC molybdate transp 100.0 9.3E-29 2E-33 187.8 11.4 118 6-127 1-145 (352)
165 PRK14251 phosphate ABC transpo 100.0 1.8E-28 4E-33 178.1 12.3 124 1-127 1-164 (251)
166 PRK13649 cbiO cobalt transport 100.0 1.1E-28 2.5E-33 181.9 11.4 122 6-127 2-162 (280)
167 PRK13639 cbiO cobalt transport 100.0 1.1E-28 2.4E-33 181.8 11.3 122 6-127 1-154 (275)
168 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.7E-29 1.2E-33 202.2 10.6 120 6-127 451-605 (686)
169 PRK14254 phosphate ABC transpo 100.0 2E-28 4.4E-33 181.3 12.6 123 4-127 37-197 (285)
170 TIGR02323 CP_lyasePhnK phospho 100.0 1.7E-28 3.7E-33 178.4 11.9 123 5-127 2-165 (253)
171 PRK14253 phosphate ABC transpo 100.0 1.9E-28 4.1E-33 177.8 12.1 122 5-127 2-162 (249)
172 COG4604 CeuD ABC-type enteroch 100.0 6.1E-30 1.3E-34 178.5 4.0 122 6-127 1-152 (252)
173 TIGR01188 drrA daunorubicin re 100.0 5.9E-29 1.3E-33 185.4 9.6 114 14-127 1-141 (302)
174 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-28 2.8E-33 179.5 11.1 121 7-127 2-154 (256)
175 TIGR03740 galliderm_ABC gallid 100.0 9.5E-29 2.1E-33 176.8 10.2 120 7-127 1-141 (223)
176 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.2E-29 1.1E-33 203.0 9.9 121 6-127 477-632 (710)
177 PRK14260 phosphate ABC transpo 100.0 2.3E-28 4.9E-33 178.6 12.3 123 4-127 5-167 (259)
178 PRK13633 cobalt transporter AT 100.0 1.6E-28 3.5E-33 181.3 11.5 123 5-127 3-161 (280)
179 PRK14237 phosphate transporter 100.0 3.1E-28 6.7E-33 178.7 12.9 122 5-127 19-180 (267)
180 COG4181 Predicted ABC-type tra 100.0 4.9E-29 1.1E-33 170.8 7.9 126 1-126 1-162 (228)
181 cd03250 ABCC_MRP_domain1 Domai 100.0 1.6E-28 3.5E-33 173.5 10.5 120 7-127 1-144 (204)
182 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.6E-28 3.5E-33 174.2 10.5 119 7-127 1-145 (211)
183 TIGR00958 3a01208 Conjugate Tr 100.0 9.1E-29 2E-33 201.8 10.5 121 6-127 478-634 (711)
184 PRK13645 cbiO cobalt transport 100.0 2.2E-28 4.7E-33 181.2 11.6 123 5-127 5-167 (289)
185 PRK10419 nikE nickel transport 100.0 2.7E-28 5.8E-33 179.1 11.9 123 5-127 2-168 (268)
186 cd03300 ABC_PotA_N PotA is an 100.0 2.9E-28 6.4E-33 175.4 11.7 121 7-127 1-147 (232)
187 PRK11288 araG L-arabinose tran 100.0 1.2E-28 2.5E-33 194.4 10.4 123 5-127 3-157 (501)
188 PRK14258 phosphate ABC transpo 100.0 4.2E-28 9E-33 177.4 12.6 124 3-127 4-167 (261)
189 PRK11022 dppD dipeptide transp 100.0 3.4E-28 7.4E-33 183.1 12.4 123 5-127 2-170 (326)
190 PRK14265 phosphate ABC transpo 100.0 3.7E-28 8.1E-33 178.9 12.2 123 4-127 18-178 (274)
191 cd03223 ABCD_peroxisomal_ALDP 100.0 1.6E-28 3.4E-33 169.0 9.6 99 7-127 1-108 (166)
192 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-28 2.4E-33 181.2 9.2 120 8-127 26-177 (269)
193 PRK13642 cbiO cobalt transport 100.0 3.8E-28 8.2E-33 179.1 12.1 125 1-127 1-157 (277)
194 PRK14243 phosphate transporter 100.0 3.3E-28 7.2E-33 178.2 11.5 122 5-127 9-168 (264)
195 TIGR02857 CydD thiol reductant 100.0 1.6E-28 3.4E-33 194.5 10.2 121 6-127 320-475 (529)
196 TIGR01186 proV glycine betaine 100.0 1.5E-28 3.1E-33 187.2 9.5 114 14-127 1-146 (363)
197 PRK11176 lipid transporter ATP 100.0 1.3E-28 2.7E-33 196.8 9.7 121 6-127 341-497 (582)
198 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-28 3.2E-33 200.3 10.1 121 6-127 473-628 (708)
199 PRK14275 phosphate ABC transpo 100.0 5.3E-28 1.2E-32 179.1 12.1 123 4-127 37-199 (286)
200 PRK11160 cysteine/glutathione 100.0 1.5E-28 3.3E-33 196.5 9.9 121 6-127 338-492 (574)
201 PRK14246 phosphate ABC transpo 100.0 5.5E-28 1.2E-32 176.6 12.0 124 4-127 8-170 (257)
202 cd03245 ABCC_bacteriocin_expor 100.0 1.5E-28 3.3E-33 175.2 8.9 121 6-127 2-157 (220)
203 PRK14271 phosphate ABC transpo 100.0 4.6E-28 1E-32 178.6 11.6 123 4-127 19-180 (276)
204 cd03233 ABC_PDR_domain1 The pl 100.0 3E-28 6.5E-33 172.3 10.1 108 6-127 3-135 (202)
205 PRK10771 thiQ thiamine transpo 100.0 4.2E-28 9.1E-33 174.5 11.0 119 6-127 1-146 (232)
206 PRK10261 glutathione transport 100.0 5E-28 1.1E-32 195.1 12.7 124 4-127 10-185 (623)
207 CHL00131 ycf16 sulfate ABC tra 100.0 5.8E-28 1.3E-32 175.5 11.7 127 1-127 1-168 (252)
208 TIGR00968 3a0106s01 sulfate AB 100.0 4.6E-28 1E-32 174.9 10.9 120 7-127 1-147 (237)
209 PRK11819 putative ABC transpor 100.0 2.8E-28 6.1E-33 194.4 10.6 123 5-127 323-462 (556)
210 PRK10790 putative multidrug tr 100.0 3.6E-28 7.8E-33 194.7 11.0 120 6-127 340-493 (592)
211 PRK15064 ABC transporter ATP-b 100.0 3.9E-28 8.5E-33 192.5 11.0 123 5-127 318-455 (530)
212 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.2E-28 7E-33 193.9 10.6 123 5-127 321-460 (552)
213 TIGR03375 type_I_sec_LssB type 100.0 2.3E-28 5.1E-33 198.8 9.9 121 6-127 463-618 (694)
214 PRK14266 phosphate ABC transpo 100.0 1E-27 2.2E-32 174.1 12.1 121 6-127 3-163 (250)
215 PRK13657 cyclic beta-1,2-gluca 100.0 3.6E-28 7.9E-33 194.6 10.8 121 6-127 334-488 (588)
216 TIGR02633 xylG D-xylose ABC tr 100.0 2.9E-28 6.2E-33 192.0 10.0 122 6-127 1-158 (500)
217 PRK14236 phosphate transporter 100.0 1.1E-27 2.4E-32 176.2 12.3 123 4-127 23-185 (272)
218 cd03299 ABC_ModC_like Archeal 100.0 9E-28 1.9E-32 173.2 11.7 119 7-127 1-146 (235)
219 cd03254 ABCC_Glucan_exporter_l 100.0 4.1E-28 8.9E-33 174.0 9.8 121 6-127 2-156 (229)
220 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.7E-28 1.5E-32 192.0 11.9 81 5-85 3-92 (552)
221 PRK14238 phosphate transporter 100.0 1.3E-27 2.9E-32 175.7 12.6 122 5-127 23-184 (271)
222 TIGR01277 thiQ thiamine ABC tr 100.0 1.1E-27 2.3E-32 170.4 11.7 119 7-127 1-145 (213)
223 cd03232 ABC_PDR_domain2 The pl 100.0 7.5E-28 1.6E-32 169.0 10.6 102 6-127 3-125 (192)
224 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.2E-28 1.8E-32 170.2 10.9 117 5-127 5-142 (207)
225 cd03252 ABCC_Hemolysin The ABC 100.0 5.4E-28 1.2E-32 174.2 9.9 120 7-127 1-155 (237)
226 PRK11147 ABC transporter ATPas 100.0 4E-28 8.6E-33 196.0 10.1 123 5-127 318-457 (635)
227 COG1129 MglA ABC-type sugar tr 100.0 4.3E-28 9.2E-33 188.9 9.7 122 4-126 6-161 (500)
228 PRK15134 microcin C ABC transp 100.0 6.4E-28 1.4E-32 191.2 10.9 123 5-127 274-442 (529)
229 cd03230 ABC_DR_subfamily_A Thi 100.0 6.6E-28 1.4E-32 166.7 9.6 94 7-127 1-112 (173)
230 TIGR03269 met_CoM_red_A2 methy 100.0 1.1E-27 2.4E-32 189.5 12.1 123 5-127 278-444 (520)
231 cd03251 ABCC_MsbA MsbA is an e 100.0 7.5E-28 1.6E-32 173.1 10.2 120 7-127 1-155 (234)
232 PRK15056 manganese/iron transp 100.0 1.1E-27 2.4E-32 176.2 11.0 122 5-127 5-159 (272)
233 cd03244 ABCC_MRP_domain2 Domai 100.0 8.1E-28 1.8E-32 171.6 10.0 120 7-127 3-156 (221)
234 PRK10261 glutathione transport 99.9 1.1E-27 2.4E-32 193.1 11.8 123 5-127 312-480 (623)
235 cd03229 ABC_Class3 This class 99.9 4.7E-28 1E-32 168.2 8.3 96 7-127 1-117 (178)
236 TIGR02203 MsbA_lipidA lipid A 99.9 5.7E-28 1.2E-32 192.5 9.9 121 6-127 330-486 (571)
237 COG4598 HisP ABC-type histidin 99.9 1.3E-28 2.8E-33 170.2 5.3 123 4-127 4-169 (256)
238 TIGR02142 modC_ABC molybdenum 99.9 1.5E-27 3.3E-32 181.3 11.6 115 11-127 4-148 (354)
239 PRK14257 phosphate ABC transpo 99.9 2.5E-27 5.5E-32 178.6 12.6 121 6-127 80-242 (329)
240 TIGR02982 heterocyst_DevA ABC 99.9 1.4E-27 3E-32 170.6 10.6 122 6-127 1-158 (220)
241 PRK10418 nikD nickel transport 99.9 2.1E-27 4.6E-32 173.0 11.4 121 6-127 4-157 (254)
242 cd03213 ABCG_EPDR ABCG transpo 99.9 1.4E-27 3.1E-32 167.9 10.2 103 5-127 2-128 (194)
243 TIGR02204 MsbA_rel ABC transpo 99.9 8.5E-28 1.8E-32 191.8 10.0 121 6-127 337-493 (576)
244 TIGR03269 met_CoM_red_A2 methy 99.9 1.6E-27 3.4E-32 188.6 11.4 121 7-127 1-185 (520)
245 PRK10938 putative molybdenum t 99.9 6.9E-28 1.5E-32 189.5 9.3 121 6-127 3-152 (490)
246 PRK09473 oppD oligopeptide tra 99.9 2.7E-27 5.9E-32 178.4 12.1 124 4-127 10-178 (330)
247 PRK14244 phosphate ABC transpo 99.9 2.4E-27 5.2E-32 172.3 11.3 121 6-127 5-166 (251)
248 TIGR03415 ABC_choXWV_ATP choli 99.9 1.6E-27 3.5E-32 182.4 10.9 116 12-127 30-181 (382)
249 cd03253 ABCC_ATM1_transporter 99.9 1.5E-27 3.2E-32 171.7 10.0 120 7-127 1-154 (236)
250 cd03247 ABCC_cytochrome_bd The 99.9 1.4E-27 3.1E-32 165.6 9.5 95 7-127 1-115 (178)
251 TIGR01166 cbiO cobalt transpor 99.9 1.6E-27 3.4E-32 166.8 9.7 112 16-127 2-144 (190)
252 cd03297 ABC_ModC_molybdenum_tr 99.9 2.5E-27 5.5E-32 168.5 10.6 117 7-127 2-148 (214)
253 cd03248 ABCC_TAP TAP, the Tran 99.9 1.4E-27 2.9E-32 171.1 9.2 122 4-127 9-167 (226)
254 COG0488 Uup ATPase components 99.9 1.1E-27 2.4E-32 189.3 9.4 123 5-127 2-170 (530)
255 cd03289 ABCC_CFTR2 The CFTR su 99.9 2E-27 4.4E-32 175.2 10.2 120 6-127 2-155 (275)
256 PRK09580 sufC cysteine desulfu 99.9 3E-27 6.5E-32 171.2 10.9 122 6-127 1-162 (248)
257 cd03234 ABCG_White The White s 99.9 2.9E-27 6.3E-32 169.5 10.6 122 6-127 3-160 (226)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.9E-27 4.1E-32 171.5 9.6 120 7-127 1-156 (238)
259 PRK14252 phosphate ABC transpo 99.9 6.1E-27 1.3E-31 171.5 12.4 122 5-127 15-178 (265)
260 PRK10982 galactose/methyl gala 99.9 1.1E-27 2.3E-32 188.5 8.9 119 9-127 1-151 (491)
261 cd03215 ABC_Carb_Monos_II This 99.9 2.4E-27 5.2E-32 165.1 9.7 96 5-127 3-121 (182)
262 COG4987 CydC ABC-type transpor 99.9 8.1E-28 1.7E-32 186.9 7.5 121 6-127 336-491 (573)
263 PRK14264 phosphate ABC transpo 99.9 7.4E-27 1.6E-31 174.4 12.4 122 5-127 44-217 (305)
264 PTZ00265 multidrug resistance 99.9 1.2E-27 2.6E-32 206.1 9.3 121 6-127 1165-1375(1466)
265 cd03246 ABCC_Protease_Secretio 99.9 2.6E-27 5.6E-32 163.8 9.1 92 7-127 1-113 (173)
266 PRK13409 putative ATPase RIL; 99.9 3.3E-27 7.2E-32 189.2 11.0 121 5-127 339-470 (590)
267 PRK15134 microcin C ABC transp 99.9 6.2E-27 1.3E-31 185.6 12.4 123 5-127 4-173 (529)
268 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.4E-27 5.2E-32 167.4 8.7 99 7-127 1-121 (200)
269 TIGR01842 type_I_sec_PrtD type 99.9 3.6E-27 7.7E-32 187.5 10.6 121 6-127 316-471 (544)
270 COG4988 CydD ABC-type transpor 99.9 3.2E-27 6.9E-32 185.1 10.1 120 7-127 321-473 (559)
271 COG1123 ATPase components of v 99.9 4.8E-27 1E-31 184.2 11.0 123 4-126 278-445 (539)
272 TIGR01192 chvA glucan exporter 99.9 4E-27 8.7E-32 188.7 10.7 121 6-127 334-488 (585)
273 cd03228 ABCC_MRP_Like The MRP 99.9 3.1E-27 6.7E-32 163.1 8.8 92 7-127 1-113 (171)
274 PRK14263 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 169.9 12.2 122 5-127 7-166 (261)
275 COG4152 ABC-type uncharacteriz 99.9 1.5E-27 3.2E-32 171.0 7.2 122 6-127 2-147 (300)
276 KOG0056|consensus 99.9 1E-27 2.3E-32 185.5 6.8 121 6-127 537-691 (790)
277 PRK13549 xylose transporter AT 99.9 2.9E-27 6.2E-32 186.7 9.3 123 5-127 258-422 (506)
278 PRK10636 putative ABC transpor 99.9 3.9E-27 8.4E-32 190.4 10.2 123 5-127 311-447 (638)
279 COG4161 ArtP ABC-type arginine 99.9 2.1E-27 4.6E-32 161.9 7.4 121 6-127 2-158 (242)
280 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2.5E-27 5.4E-32 170.0 7.9 121 7-127 23-159 (224)
281 KOG0055|consensus 99.9 3E-27 6.4E-32 197.1 9.4 121 6-127 350-506 (1228)
282 PRK09700 D-allose transporter 99.9 2.8E-27 6.1E-32 186.9 8.5 121 5-127 264-426 (510)
283 TIGR01846 type_I_sec_HlyB type 99.9 4.4E-27 9.6E-32 191.4 9.7 121 6-127 455-610 (694)
284 PRK10789 putative multidrug tr 99.9 6E-27 1.3E-31 187.1 9.9 121 6-127 313-468 (569)
285 cd03290 ABCC_SUR1_N The SUR do 99.9 1.6E-26 3.4E-31 164.9 11.0 119 8-127 2-157 (218)
286 TIGR02633 xylG D-xylose ABC tr 99.9 4.3E-27 9.4E-32 185.3 8.7 122 6-127 257-420 (500)
287 cd03267 ABC_NatA_like Similar 99.9 7.7E-27 1.7E-31 168.5 9.3 113 15-127 30-170 (236)
288 COG4619 ABC-type uncharacteriz 99.9 6.3E-28 1.4E-32 164.9 3.4 119 6-125 3-148 (223)
289 PLN03232 ABC transporter C fam 99.9 6.1E-27 1.3E-31 202.5 9.3 120 6-127 1234-1388(1495)
290 PRK10636 putative ABC transpor 99.9 1.3E-26 2.7E-31 187.4 10.5 121 6-127 1-166 (638)
291 PTZ00243 ABC transporter; Prov 99.9 9.2E-27 2E-31 201.7 10.1 120 6-127 1308-1462(1560)
292 PLN03130 ABC transporter C fam 99.9 9.6E-27 2.1E-31 202.0 9.8 120 6-127 1237-1391(1622)
293 cd03291 ABCC_CFTR1 The CFTR su 99.9 3.1E-26 6.8E-31 169.4 10.9 120 5-127 38-176 (282)
294 TIGR00954 3a01203 Peroxysomal 99.9 1.6E-26 3.5E-31 187.3 10.2 121 6-127 451-599 (659)
295 PRK11147 ABC transporter ATPas 99.9 3.3E-26 7.2E-31 184.9 12.0 77 5-81 2-86 (635)
296 cd03288 ABCC_SUR2 The SUR doma 99.9 2.6E-26 5.5E-31 167.6 10.1 123 4-127 17-173 (257)
297 PRK10938 putative molybdenum t 99.9 1.1E-26 2.4E-31 182.6 8.8 123 5-127 259-418 (490)
298 COG3845 ABC-type uncharacteriz 99.9 1.6E-26 3.4E-31 178.2 9.4 122 5-127 3-157 (501)
299 TIGR01257 rim_protein retinal- 99.9 3.6E-26 7.7E-31 200.0 12.3 122 5-127 1936-2087(2272)
300 COG4175 ProV ABC-type proline/ 99.9 1.2E-26 2.5E-31 171.5 7.5 120 6-126 4-180 (386)
301 PRK10522 multidrug transporter 99.9 1.7E-26 3.8E-31 183.7 8.9 121 6-127 322-466 (547)
302 PRK03695 vitamin B12-transport 99.9 2.3E-26 5E-31 167.2 8.7 115 8-126 2-142 (248)
303 cd03214 ABC_Iron-Siderophores_ 99.9 3.1E-26 6.6E-31 159.3 8.9 114 8-127 1-114 (180)
304 COG1119 ModF ABC-type molybden 99.9 7.5E-27 1.6E-31 167.2 5.4 123 5-127 30-188 (257)
305 TIGR00957 MRP_assoc_pro multi 99.9 2.7E-26 5.8E-31 198.7 9.7 120 6-127 1284-1438(1522)
306 PRK13545 tagH teichoic acids e 99.9 1.3E-25 2.7E-30 176.7 12.1 124 4-127 19-160 (549)
307 KOG0055|consensus 99.9 4.4E-26 9.5E-31 190.2 9.6 121 6-127 987-1143(1228)
308 PF00005 ABC_tran: ABC transpo 99.9 9.1E-26 2E-30 149.9 9.3 103 22-127 1-125 (137)
309 COG4133 CcmA ABC-type transpor 99.9 2.9E-26 6.3E-31 158.6 6.7 121 6-126 2-146 (209)
310 PLN03211 ABC transporter G-25; 99.9 9E-26 2E-30 182.8 10.7 120 8-127 70-223 (659)
311 PLN03073 ABC transporter F fam 99.9 1.1E-25 2.5E-30 183.5 11.3 121 5-127 507-644 (718)
312 TIGR01257 rim_protein retinal- 99.9 1.1E-25 2.3E-30 197.0 11.6 123 5-127 927-1078(2272)
313 TIGR01271 CFTR_protein cystic 99.9 5.8E-26 1.3E-30 196.3 9.8 120 6-127 1217-1370(1490)
314 cd03216 ABC_Carb_Monos_I This 99.9 6.8E-26 1.5E-30 155.5 8.2 99 7-127 1-99 (163)
315 TIGR01194 cyc_pep_trnsptr cycl 99.9 7.4E-26 1.6E-30 180.4 8.8 120 6-127 337-487 (555)
316 PLN03232 ABC transporter C fam 99.9 1E-25 2.2E-30 194.9 10.3 121 6-127 614-757 (1495)
317 PRK10762 D-ribose transporter 99.9 9.9E-26 2.2E-30 177.8 8.8 118 5-127 256-412 (501)
318 COG0488 Uup ATPase components 99.9 1.2E-25 2.7E-30 177.6 9.0 123 5-127 320-456 (530)
319 COG4608 AppF ABC-type oligopep 99.9 1.9E-25 4.1E-30 162.2 9.2 114 5-126 3-125 (268)
320 PLN03130 ABC transporter C fam 99.9 1.9E-25 4.2E-30 194.0 10.8 121 6-127 614-757 (1622)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.5E-25 3.3E-30 151.0 7.9 79 7-127 1-87 (144)
322 TIGR01184 ntrCD nitrate transp 99.9 2.6E-25 5.6E-30 160.0 9.4 106 22-127 1-131 (230)
323 PTZ00265 multidrug resistance 99.9 2.1E-25 4.6E-30 192.4 10.0 79 6-85 382-483 (1466)
324 COG4618 ArpD ABC-type protease 99.9 4.7E-25 1E-29 170.8 10.3 120 6-126 334-488 (580)
325 PRK13546 teichoic acids export 99.9 1.1E-24 2.3E-29 159.9 11.7 122 6-127 4-160 (264)
326 PRK10535 macrolide transporter 99.9 8.5E-25 1.8E-29 177.1 12.2 122 5-127 3-161 (648)
327 cd03237 ABC_RNaseL_inhibitor_d 99.9 4.7E-25 1E-29 160.3 9.3 108 19-127 7-132 (246)
328 COG1123 ATPase components of v 99.9 1E-24 2.2E-29 171.2 11.2 122 5-126 4-170 (539)
329 TIGR02770 nickel_nikD nickel i 99.9 9.4E-25 2E-29 157.0 10.2 107 21-127 1-142 (230)
330 PLN03073 ABC transporter F fam 99.9 6.4E-25 1.4E-29 179.1 10.5 66 6-71 177-245 (718)
331 PRK11288 araG L-arabinose tran 99.9 4.3E-25 9.3E-30 174.2 8.7 118 6-127 257-413 (501)
332 COG4674 Uncharacterized ABC-ty 99.9 1.5E-25 3.3E-30 156.3 5.3 123 5-127 4-164 (249)
333 TIGR00957 MRP_assoc_pro multi 99.9 1.1E-24 2.3E-29 188.9 10.9 121 6-127 636-777 (1522)
334 COG0396 sufC Cysteine desulfur 99.9 5.6E-24 1.2E-28 151.2 12.7 122 5-126 2-160 (251)
335 COG4136 ABC-type uncharacteriz 99.9 4.6E-25 1E-29 148.7 6.5 120 6-126 2-150 (213)
336 PRK15439 autoinducer 2 ABC tra 99.9 1.1E-24 2.3E-29 172.3 9.6 118 5-127 267-420 (510)
337 PRK10982 galactose/methyl gala 99.9 1.1E-24 2.3E-29 171.5 9.5 121 5-127 249-408 (491)
338 COG4167 SapF ABC-type antimicr 99.9 4.9E-25 1.1E-29 152.9 6.7 122 5-126 3-165 (267)
339 COG0444 DppD ABC-type dipeptid 99.9 2E-24 4.2E-29 159.9 10.1 121 6-126 1-169 (316)
340 COG4148 ModC ABC-type molybdat 99.9 6.5E-25 1.4E-29 160.1 6.9 112 12-126 6-144 (352)
341 PRK15177 Vi polysaccharide exp 99.9 1.8E-24 3.9E-29 154.2 9.0 107 20-127 1-121 (213)
342 TIGR00956 3a01205 Pleiotropic 99.9 3.4E-24 7.4E-29 184.5 11.4 122 6-127 759-918 (1394)
343 cd03222 ABC_RNaseL_inhibitor T 99.9 1.4E-24 3E-29 151.0 6.7 78 10-127 4-88 (177)
344 COG4778 PhnL ABC-type phosphon 99.9 4.1E-24 8.9E-29 146.6 6.7 121 6-126 4-168 (235)
345 TIGR00955 3a01204 The Eye Pigm 99.9 1.4E-23 3E-28 169.2 10.0 111 17-127 36-183 (617)
346 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.2E-23 2.5E-28 153.8 7.7 116 10-127 4-156 (255)
347 COG1134 TagH ABC-type polysacc 99.9 4E-23 8.7E-28 148.0 10.1 121 5-125 2-162 (249)
348 TIGR01271 CFTR_protein cystic 99.9 3.9E-23 8.4E-28 178.9 11.9 108 19-127 439-565 (1490)
349 PLN03140 ABC transporter G fam 99.9 4.6E-23 1E-27 177.8 11.6 122 6-127 867-1036(1470)
350 COG4107 PhnK ABC-type phosphon 99.9 2.2E-23 4.7E-28 143.8 7.6 126 1-126 1-167 (258)
351 KOG0054|consensus 99.9 3.5E-23 7.7E-28 175.5 8.4 121 6-127 1138-1292(1381)
352 cd03238 ABC_UvrA The excision 99.9 3E-23 6.4E-28 144.2 6.5 97 18-127 7-104 (176)
353 PRK13409 putative ATPase RIL; 99.9 3.3E-23 7.1E-28 166.3 7.7 116 10-127 77-229 (590)
354 COG4172 ABC-type uncharacteriz 99.9 2.5E-22 5.4E-27 152.7 11.0 126 1-126 1-173 (534)
355 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.1E-22 2.5E-27 138.3 8.0 51 9-59 2-52 (157)
356 COG4586 ABC-type uncharacteriz 99.9 5.2E-23 1.1E-27 149.6 6.4 123 5-127 2-173 (325)
357 PTZ00243 ABC transporter; Prov 99.9 1.4E-22 3E-27 175.9 9.8 111 16-127 670-799 (1560)
358 TIGR03771 anch_rpt_ABC anchore 99.9 2.2E-22 4.7E-27 144.2 8.5 101 27-127 1-130 (223)
359 COG4172 ABC-type uncharacteriz 99.9 5.4E-22 1.2E-26 150.9 10.5 122 5-126 275-442 (534)
360 COG5265 ATM1 ABC-type transpor 99.9 1.5E-22 3.3E-27 154.2 7.3 120 7-127 263-416 (497)
361 COG1101 PhnK ABC-type uncharac 99.9 1.8E-22 3.8E-27 142.7 7.1 121 6-127 1-165 (263)
362 KOG0054|consensus 99.9 1.1E-21 2.5E-26 166.5 10.4 121 5-126 517-659 (1381)
363 PLN03140 ABC transporter G fam 99.9 5.5E-22 1.2E-26 171.2 8.2 69 18-86 177-264 (1470)
364 TIGR00956 3a01205 Pleiotropic 99.9 2.1E-21 4.6E-26 167.4 11.2 110 18-127 73-226 (1394)
365 KOG0061|consensus 99.9 4.1E-21 8.9E-26 154.7 11.2 121 7-127 26-187 (613)
366 KOG0059|consensus 99.8 8E-21 1.7E-25 158.3 8.7 120 6-126 564-714 (885)
367 COG4178 ABC-type uncharacteriz 99.8 1.4E-20 3.1E-25 149.5 9.2 122 5-127 391-532 (604)
368 TIGR01187 potA spermidine/putr 99.8 1.5E-20 3.3E-25 141.5 7.6 91 37-127 1-117 (325)
369 KOG0927|consensus 99.8 2.5E-20 5.5E-25 145.4 5.5 124 4-127 387-526 (614)
370 KOG0927|consensus 99.8 1.6E-19 3.6E-24 140.9 7.9 53 6-58 75-127 (614)
371 cd03270 ABC_UvrA_I The excisio 99.8 2.3E-19 4.9E-24 129.0 8.2 39 15-53 4-43 (226)
372 KOG0062|consensus 99.8 1.2E-19 2.5E-24 141.0 6.7 117 7-127 81-215 (582)
373 COG1245 Predicted ATPase, RNas 99.8 1.1E-18 2.4E-23 134.5 8.2 119 7-127 343-472 (591)
374 cd03278 ABC_SMC_barmotin Barmo 99.8 5.6E-19 1.2E-23 124.7 6.0 93 21-126 11-129 (197)
375 KOG0060|consensus 99.8 2.4E-18 5.1E-23 135.4 7.4 121 5-126 432-586 (659)
376 COG4138 BtuD ABC-type cobalami 99.7 8E-19 1.7E-23 121.2 3.4 117 6-126 3-141 (248)
377 KOG0064|consensus 99.7 5.1E-18 1.1E-22 132.7 6.8 119 7-126 482-628 (728)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.7 1.3E-19 2.9E-24 129.2 -3.8 114 7-126 6-143 (212)
379 COG4615 PvdE ABC-type sideroph 99.7 1.2E-16 2.6E-21 121.8 10.8 119 6-127 322-465 (546)
380 cd03279 ABC_sbcCD SbcCD and ot 99.7 6.1E-18 1.3E-22 120.5 3.6 114 6-126 5-139 (213)
381 KOG0066|consensus 99.7 2.1E-17 4.6E-22 127.6 6.5 119 5-123 585-717 (807)
382 cd03272 ABC_SMC3_euk Eukaryoti 99.7 2.2E-17 4.8E-22 119.3 6.2 42 7-54 4-45 (243)
383 KOG2355|consensus 99.7 6.4E-17 1.4E-21 114.3 8.1 49 6-54 13-62 (291)
384 cd03271 ABC_UvrA_II The excisi 99.7 7.7E-17 1.7E-21 118.2 6.8 34 19-52 8-41 (261)
385 cd03273 ABC_SMC2_euk Eukaryoti 99.6 2.3E-16 4.9E-21 114.8 2.8 43 7-55 6-48 (251)
386 cd00820 PEPCK_HprK Phosphoenol 99.6 1.5E-15 3.3E-20 97.3 5.3 62 19-84 2-77 (107)
387 KOG0065|consensus 99.6 1.4E-15 3.1E-20 128.4 6.1 119 7-125 788-944 (1391)
388 cd03240 ABC_Rad50 The catalyti 99.6 1.4E-15 3.1E-20 107.8 5.1 91 25-126 16-137 (204)
389 KOG0066|consensus 99.6 5.4E-15 1.2E-19 114.4 7.8 49 6-54 264-312 (807)
390 PRK00349 uvrA excinuclease ABC 99.5 2.6E-14 5.6E-19 119.6 9.1 43 6-53 614-656 (943)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.5 3.6E-14 7.9E-19 100.2 7.3 96 21-126 11-125 (198)
392 COG1129 MglA ABC-type sugar tr 99.5 4.6E-14 9.9E-19 110.7 8.5 118 5-126 262-417 (500)
393 COG2401 ABC-type ATPase fused 99.5 2.2E-14 4.7E-19 110.2 6.4 107 20-126 397-523 (593)
394 TIGR00630 uvra excinuclease AB 99.5 4.3E-14 9.4E-19 118.1 7.9 40 6-50 612-651 (924)
395 KOG0063|consensus 99.5 1.1E-13 2.4E-18 106.5 8.5 109 16-125 345-471 (592)
396 COG1245 Predicted ATPase, RNas 99.5 1.8E-14 3.9E-19 111.4 4.2 115 11-127 79-230 (591)
397 KOG0062|consensus 99.5 3.4E-14 7.4E-19 110.9 4.9 122 4-125 360-497 (582)
398 PRK00635 excinuclease ABC subu 99.5 1.9E-13 4.1E-18 119.5 8.5 40 6-50 600-639 (1809)
399 COG3845 ABC-type uncharacteriz 99.5 6.5E-13 1.4E-17 103.3 10.2 123 4-126 255-419 (501)
400 COG4170 SapD ABC-type antimicr 99.5 1.3E-13 2.8E-18 98.2 5.7 123 4-126 1-174 (330)
401 KOG0065|consensus 99.4 2.8E-13 6E-18 114.8 5.7 108 19-126 128-276 (1391)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.3 5.5E-13 1.2E-17 96.9 3.0 41 7-54 4-44 (247)
403 cd03280 ABC_MutS2 MutS2 homolo 99.3 1.3E-12 2.7E-17 92.3 2.0 34 20-53 15-49 (200)
404 cd03283 ABC_MutS-like MutS-lik 99.2 1.8E-11 3.9E-16 86.6 3.3 66 18-85 13-83 (199)
405 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.8E-10 3.8E-15 82.3 6.4 32 22-54 14-45 (213)
406 TIGR03238 dnd_assoc_3 dnd syst 99.1 1.1E-10 2.3E-15 91.5 4.7 36 19-56 19-54 (504)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.1 4.5E-11 9.8E-16 85.9 1.9 38 17-54 15-52 (222)
408 cd03239 ABC_SMC_head The struc 99.0 8.8E-10 1.9E-14 76.7 6.0 32 23-54 13-44 (178)
409 cd03227 ABC_Class2 ABC-type Cl 99.0 1.4E-09 3.1E-14 74.3 6.0 33 22-54 11-43 (162)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.0 9.3E-10 2E-14 78.2 4.9 38 17-54 14-51 (204)
411 cd03243 ABC_MutS_homologs The 98.9 1.3E-09 2.9E-14 76.9 5.2 34 21-54 18-51 (202)
412 PRK07196 fliI flagellum-specif 98.9 1.5E-09 3.2E-14 84.7 5.8 38 18-56 142-179 (434)
413 cd01128 rho_factor Transcripti 98.9 8.6E-09 1.9E-13 75.3 8.6 33 24-56 8-40 (249)
414 COG0178 UvrA Excinuclease ATPa 98.9 4.1E-09 8.8E-14 86.6 7.4 32 19-50 614-645 (935)
415 PF13555 AAA_29: P-loop contai 98.9 2.3E-09 4.9E-14 62.2 4.2 33 22-54 12-45 (62)
416 PRK06002 fliI flagellum-specif 98.8 8.4E-09 1.8E-13 80.7 6.3 50 6-56 139-189 (450)
417 TIGR00767 rho transcription te 98.8 7.6E-09 1.6E-13 79.9 5.8 50 6-55 130-191 (415)
418 cd03287 ABC_MSH3_euk MutS3 hom 98.8 8.8E-09 1.9E-13 74.1 4.4 37 18-54 17-53 (222)
419 PRK07594 type III secretion sy 98.7 1.9E-08 4.1E-13 78.5 5.1 52 6-58 129-181 (433)
420 cd01136 ATPase_flagellum-secre 98.7 3.8E-08 8.3E-13 74.4 6.0 41 18-59 56-96 (326)
421 PRK06995 flhF flagellar biosyn 98.7 1.5E-08 3.3E-13 80.0 4.0 63 21-86 245-309 (484)
422 cd01130 VirB11-like_ATPase Typ 98.7 6.9E-09 1.5E-13 72.5 1.8 35 21-55 14-48 (186)
423 PRK06793 fliI flagellum-specif 98.7 5.2E-08 1.1E-12 76.1 6.8 105 7-125 131-236 (432)
424 cd03284 ABC_MutS1 MutS1 homolo 98.7 1.6E-08 3.4E-13 72.4 3.5 36 18-54 17-52 (216)
425 TIGR00235 udk uridine kinase. 98.7 1.3E-08 2.7E-13 72.2 3.0 39 30-70 4-42 (207)
426 KOG0063|consensus 98.7 1.5E-08 3.3E-13 78.6 3.1 31 30-60 98-128 (592)
427 PRK08149 ATP synthase SpaL; Va 98.6 6.3E-08 1.4E-12 75.6 6.2 39 18-57 138-176 (428)
428 PRK00635 excinuclease ABC subu 98.6 4.5E-08 9.8E-13 86.6 5.8 52 7-58 936-988 (1809)
429 PRK10078 ribose 1,5-bisphospho 98.6 3.1E-08 6.8E-13 69.1 3.9 26 32-57 2-27 (186)
430 PRK07721 fliI flagellum-specif 98.6 7.1E-08 1.5E-12 75.6 5.4 41 18-59 145-185 (438)
431 TIGR02546 III_secr_ATP type II 98.6 7.8E-08 1.7E-12 75.1 5.2 41 18-59 132-172 (422)
432 PF13476 AAA_23: AAA domain; P 98.6 5.1E-08 1.1E-12 67.6 3.7 33 21-54 9-41 (202)
433 PRK09862 putative ATP-dependen 98.6 5.5E-08 1.2E-12 77.3 4.3 48 9-56 187-234 (506)
434 PRK09825 idnK D-gluconate kina 98.6 4.8E-08 1E-12 67.8 3.4 26 31-56 2-27 (176)
435 PRK05688 fliI flagellum-specif 98.6 1E-07 2.2E-12 74.8 5.4 39 18-57 155-193 (451)
436 PRK08972 fliI flagellum-specif 98.6 1E-07 2.2E-12 74.5 5.4 38 19-57 150-187 (444)
437 TIGR01026 fliI_yscN ATPase Fli 98.6 9.4E-08 2E-12 74.9 5.2 41 18-59 150-190 (440)
438 PRK09099 type III secretion sy 98.6 1.3E-07 2.9E-12 74.0 5.6 40 18-58 150-189 (441)
439 cd03286 ABC_MSH6_euk MutS6 hom 98.5 1.6E-07 3.5E-12 67.4 5.2 38 17-54 15-52 (218)
440 TIGR03496 FliI_clade1 flagella 98.5 1.8E-07 4E-12 72.8 5.4 50 8-58 113-163 (411)
441 TIGR03497 FliI_clade2 flagella 98.5 2.3E-07 5E-12 72.2 5.8 42 18-60 124-165 (413)
442 PRK06936 type III secretion sy 98.5 2.6E-07 5.6E-12 72.3 5.9 41 18-59 149-189 (439)
443 PRK05922 type III secretion sy 98.5 2.2E-07 4.7E-12 72.6 5.4 39 19-58 145-183 (434)
444 cd03281 ABC_MSH5_euk MutS5 hom 98.5 1.8E-07 3.9E-12 66.8 4.5 31 24-54 19-51 (213)
445 PRK00300 gmk guanylate kinase; 98.5 1.1E-07 2.4E-12 66.9 3.4 27 30-56 3-29 (205)
446 PRK15494 era GTPase Era; Provi 98.5 1.2E-07 2.7E-12 72.0 3.8 50 6-55 18-75 (339)
447 TIGR03498 FliI_clade3 flagella 98.5 3E-07 6.4E-12 71.7 5.6 40 19-59 128-167 (418)
448 TIGR03263 guanyl_kin guanylate 98.4 1.7E-07 3.6E-12 64.7 3.5 24 32-55 1-24 (180)
449 PRK10246 exonuclease subunit S 98.4 3.5E-07 7.6E-12 78.4 5.8 45 6-54 5-52 (1047)
450 TIGR01069 mutS2 MutS2 family p 98.4 2.3E-07 5E-12 77.2 4.5 32 24-55 313-345 (771)
451 PRK06820 type III secretion sy 98.4 4.7E-07 1E-11 70.9 5.9 42 18-60 150-191 (440)
452 PRK08472 fliI flagellum-specif 98.4 2.7E-07 5.9E-12 72.1 4.3 38 18-56 144-181 (434)
453 PRK14721 flhF flagellar biosyn 98.4 1.8E-07 3.9E-12 72.9 3.2 26 29-54 188-213 (420)
454 TIGR03185 DNA_S_dndD DNA sulfu 98.4 5.3E-07 1.1E-11 73.9 5.5 44 6-53 5-49 (650)
455 TIGR02322 phosphon_PhnN phosph 98.4 2.7E-07 5.9E-12 63.6 3.2 24 32-55 1-24 (179)
456 PRK14723 flhF flagellar biosyn 98.4 2.3E-07 4.9E-12 76.8 3.0 35 21-55 174-208 (767)
457 COG3950 Predicted ATP-binding 98.4 2.1E-07 4.6E-12 70.5 2.5 45 8-54 2-46 (440)
458 PRK06731 flhF flagellar biosyn 98.3 3.5E-07 7.6E-12 67.6 3.2 50 6-55 40-98 (270)
459 cd03241 ABC_RecN RecN ATPase i 98.3 9.6E-07 2.1E-11 65.3 5.3 32 21-53 11-42 (276)
460 PRK07960 fliI flagellum-specif 98.3 5.5E-07 1.2E-11 70.6 4.1 37 20-57 164-200 (455)
461 PRK09270 nucleoside triphospha 98.3 4.1E-07 8.8E-12 65.5 3.0 26 30-55 31-56 (229)
462 cd02025 PanK Pantothenate kina 98.3 3.5E-07 7.6E-12 65.7 2.6 22 34-55 1-22 (220)
463 TIGR02788 VirB11 P-type DNA tr 98.3 3E-07 6.6E-12 69.0 2.2 32 25-56 137-168 (308)
464 PRK14722 flhF flagellar biosyn 98.3 4.4E-07 9.5E-12 69.8 3.1 36 20-55 125-160 (374)
465 PLN02796 D-glycerate 3-kinase 98.3 1.7E-07 3.7E-12 71.2 0.9 37 20-56 80-124 (347)
466 PRK06315 type III secretion sy 98.3 3.5E-07 7.5E-12 71.7 2.5 37 19-56 152-188 (442)
467 cd03242 ABC_RecF RecF is a rec 98.3 1.3E-06 2.8E-11 64.4 5.1 33 21-54 11-43 (270)
468 PRK08533 flagellar accessory p 98.3 9.2E-07 2E-11 63.9 3.9 39 7-54 8-47 (230)
469 TIGR00554 panK_bact pantothena 98.3 6.4E-07 1.4E-11 66.9 3.0 24 32-55 62-85 (290)
470 cd02023 UMPK Uridine monophosp 98.3 6.1E-07 1.3E-11 62.9 2.7 23 34-56 1-23 (198)
471 cd00879 Sar1 Sar1 subfamily. 98.3 4.4E-07 9.5E-12 62.8 2.0 33 21-54 9-41 (190)
472 PRK13477 bifunctional pantoate 98.2 1.4E-06 3.1E-11 69.4 4.9 42 12-54 265-306 (512)
473 PRK00064 recF recombination pr 98.2 1.8E-06 3.9E-11 66.2 5.3 33 21-54 13-45 (361)
474 PHA02562 46 endonuclease subun 98.2 2.2E-06 4.7E-11 68.8 5.8 30 25-54 20-49 (562)
475 PRK05480 uridine/cytidine kina 98.2 8.4E-07 1.8E-11 62.8 3.0 39 30-70 4-42 (209)
476 TIGR00750 lao LAO/AO transport 98.2 6.3E-07 1.4E-11 67.1 2.4 36 19-54 21-56 (300)
477 TIGR02168 SMC_prok_B chromosom 98.2 1.4E-06 2.9E-11 74.5 4.7 26 26-52 18-43 (1179)
478 TIGR00618 sbcc exonuclease Sbc 98.2 1.6E-06 3.4E-11 74.4 4.6 43 6-53 5-47 (1042)
479 PRK08927 fliI flagellum-specif 98.2 3.1E-06 6.8E-11 66.4 5.7 35 23-57 149-183 (442)
480 PF03193 DUF258: Protein of un 98.2 1.7E-06 3.6E-11 59.4 3.7 25 31-55 34-58 (161)
481 cd04155 Arl3 Arl3 subfamily. 98.2 1.3E-06 2.8E-11 59.4 3.1 23 33-55 15-37 (173)
482 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.2E-06 9E-11 62.3 6.1 33 22-55 152-184 (287)
483 PRK00098 GTPase RsgA; Reviewed 98.2 4.8E-06 1E-10 62.3 6.3 25 31-55 163-187 (298)
484 PRK04863 mukB cell division pr 98.2 2E-06 4.2E-11 75.8 4.7 33 22-55 18-50 (1486)
485 cd04159 Arl10_like Arl10-like 98.2 1.3E-06 2.8E-11 57.7 2.9 21 35-55 2-22 (159)
486 PRK02224 chromosome segregatio 98.2 2.2E-06 4.8E-11 72.1 4.7 39 7-53 6-44 (880)
487 smart00382 AAA ATPases associa 98.2 2.2E-06 4.8E-11 55.1 3.5 25 31-55 1-25 (148)
488 PRK09183 transposase/IS protei 98.1 1.5E-06 3.2E-11 63.9 2.9 33 21-54 92-124 (259)
489 PF01926 MMR_HSR1: 50S ribosom 98.1 1.9E-06 4.2E-11 55.3 3.0 22 34-55 1-22 (116)
490 TIGR00611 recf recF protein. A 98.1 4.4E-06 9.4E-11 64.3 5.4 35 19-54 11-45 (365)
491 TIGR00150 HI0065_YjeE ATPase, 98.1 2.4E-06 5.1E-11 56.9 3.4 28 28-55 18-45 (133)
492 PF02463 SMC_N: RecF/RecN/SMC 98.1 3.2E-06 7E-11 60.1 4.2 30 23-53 16-45 (220)
493 TIGR02524 dot_icm_DotB Dot/Icm 98.1 2E-06 4.3E-11 66.0 3.3 26 30-55 132-157 (358)
494 COG0419 SbcC ATPase involved i 98.1 2.1E-06 4.6E-11 72.7 3.6 31 24-54 16-47 (908)
495 PRK10416 signal recognition pa 98.1 1.9E-06 4.1E-11 65.1 2.9 25 30-54 112-136 (318)
496 cd04104 p47_IIGP_like p47 (47- 98.1 2.4E-06 5.2E-11 60.0 3.3 22 34-55 3-24 (197)
497 PF13207 AAA_17: AAA domain; P 98.1 2.5E-06 5.5E-11 54.9 2.9 22 34-55 1-22 (121)
498 cd02026 PRK Phosphoribulokinas 98.1 2.1E-06 4.6E-11 63.6 2.8 22 34-55 1-22 (273)
499 TIGR02858 spore_III_AA stage I 98.1 3.3E-06 7.1E-11 62.5 3.6 24 33-56 112-135 (270)
500 PRK01889 GTPase RsgA; Reviewed 98.1 2.9E-06 6.3E-11 65.0 3.4 35 21-55 184-218 (356)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-38 Score=220.93 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=99.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee---------------ee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA---------------SD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~---------------i~ 64 (127)
++|+++|++|+||+.++|++||++|++||+++||||+|||||||||+|+++. .+.+++ +|
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4799999999999999999999999999999999999999999999999953 344432 78
Q ss_pred eeeecccCCCCcchHHHHHHHHh-------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK-------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||+.+.++.+|+.||+.+... ...++...+++... +..+.++.+|||||||||+|||||+.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 99999999999999999988652 12222222333222 33467778899999999999999974
No 2
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=218.30 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=100.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee---------eeeeeeecc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK---------ASDLISRAT 70 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~---------~i~~~~q~~ 70 (127)
++++++++++.|++..+|+|+||+|.+||+++|+||+|||||||||+|+|... +.++ .++|+||+.
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 46899999999999999999999999999999999999999999999999543 3332 389999999
Q ss_pred cCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
...+..|+.||+.++... ...+.+.+..... ...++++.+|||||||||+|||||+.
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 998889999999987642 1222333333333 35578888999999999999999973
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=217.82 Aligned_cols=123 Identities=18% Similarity=0.178 Sum_probs=97.0
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee-----------eeeeeee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI-----------KASDLIS 67 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~-----------~~i~~~~ 67 (127)
+++|+++|+++.|++.++|+||||+|++|++++|+||||||||||+|+|+|. |++.+ ..|||+|
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 3589999999999966899999999999999999999999999999999994 33333 1399999
Q ss_pred ecc--cCCCCcchHHHHHHHHh--------------hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RAT--TSPWPGTTLNLLKEIIK--------------IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~--~~~~~~t~~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|.. ...+|.||+|.+..... ...++.+++.+.. ++.++...+|||||+|||.|||||++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhcc
Confidence 966 34568899999987531 1122344444444 45566666799999999999999974
No 4
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-36 Score=224.93 Aligned_cols=122 Identities=19% Similarity=0.142 Sum_probs=100.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~ 67 (127)
.+|+++|++|.||+..+++++|++|++||+++|+||||||||||||+|+|..+ +.++ +++++|
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 47999999999988669999999999999999999999999999999999543 3332 399999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHH----HhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKEL----GKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+...|+.+||+||+.++... ..++++++. ... ++.++.+.+|||||||||+|||||++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhc
Confidence 999999999999999998742 223333333 333 45566667799999999999999975
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.9e-36 Score=216.84 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=98.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~~ 66 (127)
+|+++|++++|+++++++|+||+|++||+++|+||||||||||||+|+|. |++.+++ ++|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 68999999999999999999999999999999999999999999999994 3344432 8999
Q ss_pred eecccCCCCcchHHHHHHHHh----------hhhHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIK----------IQTVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||.+...+++||.|.+.++.. .++.+. ++.++.. ++.++...+|||||||||.|||||++
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ 155 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQ 155 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhc
Confidence 999988899999999887531 111222 3333333 45566677899999999999999975
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-35 Score=223.15 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=101.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~ 67 (127)
+.++++|++|.|++..+++|+||+|++||+++|+||||||||||||+|+|.. ++.++ .+++||
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 5799999999999999999999999999999999999999999999999954 33333 289999
Q ss_pred ecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|+...++.+||.||+.++... ...+++.+..... .+.++.+.+|||||||||+|||||+
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 999999999999999998751 1223444443332 3456777789999999999999996
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.3e-35 Score=208.66 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=95.6
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee-----ee---------------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK-----IK--------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~-----~~--------------- 61 (127)
+++++||++.|+. .++|+++||+|++||+++|+||+||||||||++|.|...++ +.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4689999999964 36999999999999999999999999999999999964332 22
Q ss_pred ---eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHH----HhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ---ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKEL----GKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ---~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~----~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+||+||+....+.+|+.||+.++... ...+..+.+ +......+.++.+|||||||||+|||||+.
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 189999999999999999999976521 112223333 333233446677799999999999999973
No 8
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=206.46 Aligned_cols=122 Identities=13% Similarity=0.035 Sum_probs=97.2
Q ss_pred CeeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee-----------------
Q psy18211 5 PALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK----------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~----------------- 61 (127)
.+|+++|+++.| +++++|+||||+|++||+++||||+|||||||||+|+|..++ .++
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 379999999999 889999999999999999999999999999999999995432 222
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh------------------hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHh
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI------------------QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~ 123 (127)
.+||+||++...+..+|.+|+..+... ...+.+++++.......+.. +|||||+|||+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-TLSGGQQQRVAIAR 160 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-cCCcchhHHHHHHH
Confidence 289999999999999999999875411 11223444444433334444 59999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 161 aL~Q 164 (258)
T COG3638 161 ALVQ 164 (258)
T ss_pred HHhc
Confidence 9975
No 9
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-34 Score=211.78 Aligned_cols=121 Identities=14% Similarity=0.075 Sum_probs=99.4
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eeee-------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIKA------------- 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~~------------- 62 (127)
||++++++|.|.. ..+++||||+|++||++||||++|||||||+|+++++..+ .+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999976 4699999999999999999999999999999999996443 3322
Q ss_pred ----eeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 63 ----SDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 63 ----i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
||++||++......||.+|+.++..- ....++.++.... +..+.++.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHh
Confidence 89999999998889999999998742 2233444443333 4557778889999999999999996
No 10
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-34 Score=200.63 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=97.6
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------------e
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-----------------A 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-----------------~ 62 (127)
||+++||+|.|++ +++|+||||+|++||++.|+||+|||||||+|+|++.. ++.++ .
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999964 66999999999999999999999999999999999953 33332 2
Q ss_pred eeeeeecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHhhh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKILL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++||+.......||+||++++.. ....+++.+.+....+ .+..+.+|||||||||+||||++.
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~ 154 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVN 154 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHcc
Confidence 8999999999999999999998763 2223344444444332 244556799999999999999863
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-34 Score=204.92 Aligned_cols=121 Identities=12% Similarity=0.038 Sum_probs=100.4
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee--------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~--------------i~~~ 66 (127)
||+++||||+|+++.+++|+||+|++||+++++||+||||||+||||++.. ++.+++ |||+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 589999999999999999999999999999999999999999999999953 344432 8999
Q ss_pred eecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh-----hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 67 SRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI-----LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
-|....++.+||.||+..... ...+.+.+++.... .+.++++++|||||+|||.+||||+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 999999999999999987542 12233334433322 4668889999999999999999996
No 12
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=196.67 Aligned_cols=122 Identities=15% Similarity=0.163 Sum_probs=94.6
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----------ceeee------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----------LCKIK------------ 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----------~~~~~------------ 61 (127)
.+.++++|+++.||++.+|+|||++|+++.+++||||+|||||||||+++... ++.++
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 35799999999999999999999999999999999999999999999999842 22221
Q ss_pred ----eeeeeeecccCCCCcchHHHHHHHHhh------hhHH----HHHHHHhHhhh---cccCCCCCCcccchhhhhHhh
Q psy18211 62 ----ASDLISRATTSPWPGTTLNLLKEIIKI------QTVC----KVKELGKKILL---SQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 62 ----~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~----~~~~~~~~~~~---~~~~~~~LSgGekqrv~ia~a 124 (127)
.+|++||.+.. ||+|++||+.++... ..++ .++....+.+. .++.+..|||||+||+|||||
T Consensus 85 ~lRr~vGMVFQkPnP-Fp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 85 ELRRRVGMVFQKPNP-FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHheeeccCCCC-CCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 28999999864 669999999987631 1122 23333333322 234455699999999999999
Q ss_pred hh
Q psy18211 125 LI 126 (127)
Q Consensus 125 L~ 126 (127)
|+
T Consensus 164 lA 165 (253)
T COG1117 164 LA 165 (253)
T ss_pred Hh
Confidence 85
No 13
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-33 Score=209.74 Aligned_cols=127 Identities=13% Similarity=0.033 Sum_probs=101.3
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------ee
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------AS 63 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i 63 (127)
|..+++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||||+|+|.. ++.++ .+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 80 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDI 80 (351)
T ss_pred CCCCcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 66778999999999999888999999999999999999999999999999999953 23222 38
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..++.+|+.||+.+.... ...+.+.++.... .+.++.+.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999887788999999986531 1122333332222 33466667799999999999999974
No 14
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-32 Score=208.17 Aligned_cols=122 Identities=18% Similarity=0.121 Sum_probs=97.0
Q ss_pred CeeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeee
Q psy18211 5 PALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLI 66 (127)
Q Consensus 5 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~ 66 (127)
++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||||+|+|.. ++.++ .++|+
T Consensus 2 ~~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred CEEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 369999999999 7888999999999999999999999999999999999953 23222 38999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHH----HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.+.... .....+.+ +... .+.++.+.+|||||||||+|||||++
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999888788999999876531 11122233 2332 34456666799999999999999974
No 15
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=195.16 Aligned_cols=123 Identities=15% Similarity=0.042 Sum_probs=97.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~ 64 (127)
++|+++|++..||..++|++|||++++||+++|+|+||||||||||+|+|.. ++..+ +++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 5899999999999999999999999999999999999999999999999953 33332 389
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhh-----HHHHHHHHh----HhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQT-----VCKVKELGK----KILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||....++.+||.||+........ ...+++.-. -.+..++.+.+|||||||.++|||||+.
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999999999997642211 111222111 1133455556699999999999999963
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.1e-32 Score=195.43 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=97.1
Q ss_pred CeeeeceeEEEeCCCC----ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------
Q psy18211 5 PALEGREVILVARPEP----NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------- 61 (127)
++++++|+++.|+.+. ++++|||+|.+||++||+|++|||||||.|+|+|. |++.++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4799999999999877 99999999999999999999999999999999994 333332
Q ss_pred -eeeeeeecccCC--CCcchHHHHHHHHhh----h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 -ASDLISRATTSP--WPGTTLNLLKEIIKI----Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 -~i~~~~q~~~~~--~~~t~~~~l~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.+.++||++... +..||.+.+..+... . ..+.++.++....+.++.+.+|||||+||++|||||+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~ 157 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALI 157 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhc
Confidence 278999988653 345888888766531 1 2334444444445677888889999999999999996
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.8e-33 Score=203.18 Aligned_cols=121 Identities=16% Similarity=0.088 Sum_probs=101.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee---------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK---------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~---------------~i~~ 65 (127)
+|+++|+++.|+...+++|||++|+.||.++++||||||||||||+|+|... +.++ .|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 5899999999999999999999999999999999999999999999999543 2222 2999
Q ss_pred eeecccCCCCcchHHHHHHHHh--------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIK--------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++|+...++.+||.+|+.+... ...+.++.+++..+ .+.++++.+|||||||||+|||||+
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA 153 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALA 153 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhh
Confidence 9999999999999999999872 12233444444333 4568888899999999999999986
No 18
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=1.8e-33 Score=196.24 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=99.1
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------ee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------AS 63 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i 63 (127)
++.|.++|+.|+|++++++++|||+|++||++||+|||||||||.|.+++|. |.+.++ ++
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 3579999999999999999999999999999999999999999999999994 333332 38
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
||+||++..+-.+||.||+...... ...++++.+...+ ++.+.++.+||||||+|+.|||||+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHh
Confidence 9999999998899999999865421 1122233443333 3456667779999999999999986
No 19
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.98 E-value=4.8e-32 Score=201.36 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=99.7
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee-------------eee
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA-------------SDL 65 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~-------------i~~ 65 (127)
.+++++|+++.|+ ++++|+||||+|++||++||+||||||||||+|+|+|. |++.+.+ +||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3689999999999 69999999999999999999999999999999999994 3333332 899
Q ss_pred eeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHhhhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKILLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++..++.+|++|++.+.... ..++.++++.....+. ++...+||+|||||+.||.||++
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~ 153 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH 153 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence 99999999999999999986531 1233455544444333 45556699999999999999974
No 20
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.98 E-value=3.6e-32 Score=206.47 Aligned_cols=123 Identities=14% Similarity=0.040 Sum_probs=98.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~ 67 (127)
++|+++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|.. ++.++ .++|+|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5799999999999888999999999999999999999999999999999953 23332 389999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+...++.+|+.||+.++... .....++++.... .+.++.+.+|||||||||+|||||++
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 998888889999999886531 1122333333222 23456667799999999999999974
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=1.2e-31 Score=200.21 Aligned_cols=123 Identities=14% Similarity=0.024 Sum_probs=95.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------eeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------ASDLI 66 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------~i~~~ 66 (127)
++++++|++++|+++++|+|+||+|++||++||+||||||||||+++|+|. |++.++ .++|+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 589999999999998999999999999999999999999999999999995 233332 28999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.+.... .....+.++.... ...++...+||+|||||++||+||++
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 9998887788999999864421 1112222322222 22345556699999999999999974
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=6.7e-32 Score=192.63 Aligned_cols=123 Identities=16% Similarity=0.101 Sum_probs=99.8
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------------- 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------------- 61 (127)
.+.|++++++++||++.+++++||+|++||+++|+||+|+|||||||+|.|+. ++.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999953 33332
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhhh---hHHHHHHH--------HhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKIQ---TVCKVKEL--------GKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.+|++||....+..+||.||+.++.... .++.++++ +......+..+++|||||++|++|||||+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAia 161 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIA 161 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHh
Confidence 2899999998888999999999876432 12222222 11112346777889999999999999986
No 23
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.2e-31 Score=204.86 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=97.8
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLI 66 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~ 66 (127)
.++|+++|+++.|+++++++++||+|++||+++|+|||||||||||++|+|.. ++.++ .++|+
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 45799999999999888999999999999999999999999999999999953 22222 38999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.+.... ...+.++++.... .+.++.+.+|||||||||+|||||++
T Consensus 92 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 92 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred ecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999888888999999876531 1122233322221 33456666799999999999999974
No 24
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=2.2e-31 Score=204.82 Aligned_cols=123 Identities=14% Similarity=0.119 Sum_probs=97.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 5899999999999999999999999999999999999999999999999942 23222 2899
Q ss_pred eeecccCCCCcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..++.+|+.|++.+... ....+.++++.... .+.++...+||||||||++|||||++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999888889999999976421 11122333333322 33456667799999999999999975
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=2.7e-31 Score=200.82 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=95.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLI 66 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~ 66 (127)
++|+++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|.. ++.++ .++|+
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 4799999999999999999999999999999999999999999999999943 23322 28999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.+.... ...+.+.++..... ..++...+||+|||||++||+||++
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9998888888999999864321 11122233322222 2345556699999999999999974
No 26
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.2e-31 Score=201.70 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=96.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~ 67 (127)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|++
T Consensus 2 ~~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred CEEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 3699999999999888999999999999999999999999999999999953 22221 289999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++.+|+.||+.+.... ...+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 998777778999999876421 1112233322222 23455666799999999999999974
No 27
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=188.55 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=97.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~~ 66 (127)
||+++|++++..++.+++++||++++||+.+|+||||||||||||.|+|. |++.+++ .+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 58999999999999999999999999999999999999999999999994 3344433 6789
Q ss_pred eecccCCCCcchHHHHHHHHh------h--hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIK------I--QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~------~--~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+....|++||.|.+.+... . +..+..++..... .+..+...+|||||||||.+||.|.+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQ 152 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQ 152 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHH
Confidence 999999999999999998651 1 1222333333332 34455555699999999999999874
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=2.4e-31 Score=201.23 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=94.0
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------- 61 (127)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 47999999999999999999999999999999999953 22221
Q ss_pred --eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 --ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 --~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|+||++..+...|+.||+.++... ...+.+.++.... ...++.+.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 389999998877778999999876521 1122223322222 23456667799999999999999973
No 29
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=7.3e-31 Score=191.86 Aligned_cols=122 Identities=16% Similarity=0.049 Sum_probs=94.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------eeeeeeecc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------ASDLISRAT 70 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------~i~~~~q~~ 70 (127)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 5799999999999889999999999999999999999999999999999953 22222 378999998
Q ss_pred cCCCCcchHHHHHHHHhh----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..+...|+.||+.+.... ...+.++.+... ...++...+||||||||++|||||++
T Consensus 91 ~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~ 150 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIH 150 (257)
T ss_pred cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 766667999999764321 112233333332 22345556699999999999999974
No 30
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.3e-31 Score=201.50 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=97.8
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLI 66 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~ 66 (127)
.++|+++|+++.|++.++++++||+|++||+++|+||||||||||||+|+|.. ++.++ .++|+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 34799999999999888999999999999999999999999999999999953 22222 38999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.+.... ...+.+.++.... .+.++.+.+|||||||||+|||||+.
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999888788999999876531 1122333332222 23456666799999999999999974
No 31
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=6.5e-31 Score=187.10 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=91.8
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------------
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------------- 61 (127)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4899999999964 46999999999999999999999999999999999942 22221
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 155 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVH 155 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 278999998766678999999865321 1122233322222 22345556699999999999999974
No 32
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=187.24 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=96.5
Q ss_pred eeeeceeEEEeCCCC-ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee-------------eeee
Q psy18211 6 ALEGREVILVARPEP-NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA-------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~-~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~-------------i~~~ 66 (127)
||++.+++++|+..+ +++||||++++||++||+|||||||||+||+|++. |.+.+++ +|++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 689999999999876 99999999999999999999999999999999994 3344432 8888
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHH----HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.+...|..+|++||+.++..- ....++++ +....-++++++. ||.|+||||.|||||++
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~-~S~G~kqkV~iARAlvh 150 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGE-FSTGMKQKVAIARALVH 150 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhh-hchhhHHHHHHHHHHhc
Confidence 8888888899999999987521 12233333 3333234456665 99999999999999986
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.97 E-value=5.5e-31 Score=200.53 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=96.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-------ceeee------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-------LCKIK------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-------~~~~~------------~i~~~ 66 (127)
.|+++|++++|+++.+|+|+||+|++||+++|+|||||||||||++|+|.. ++.++ .++|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 489999999999888999999999999999999999999999999999953 22222 28999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++.+|+.||+.++... .....+.++.... .+.++.+.+|||||||||+|||||++
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~ 154 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI 154 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999888788999999876531 1122233322222 23456667799999999999999974
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.97 E-value=7.3e-31 Score=199.33 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=96.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q 68 (127)
+|+++|++++|+++++++|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 589999999999888999999999999999999999999999999999953 33332 3899999
Q ss_pred cccCCCCcchHHHHHHHHhh----------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI----------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++.+|+.||+.+.... ...+.+.++.... .+.++.+.+|||||||||+|||||++
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~ 153 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAV 153 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 98877778999999876421 1122333333222 23456667799999999999999974
No 35
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.9e-31 Score=186.64 Aligned_cols=121 Identities=15% Similarity=0.088 Sum_probs=92.1
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~ 69 (127)
++++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 57899999998888999999999999999999999999999999999942 22221 37899998
Q ss_pred ccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..++..|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAR 147 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 8766678999999764321 1112223322222 22345556699999999999999974
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=1.1e-30 Score=194.66 Aligned_cols=123 Identities=15% Similarity=0.033 Sum_probs=94.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLI 66 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~ 66 (127)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 3799999999999888999999999999999999999999999999999942 22221 38999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.||+.+.... .....+.++.... ...++...+||||||||++||+||++
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9998777778999999753311 1112222222222 22345556799999999999999974
No 37
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.97 E-value=2e-30 Score=185.94 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=94.9
Q ss_pred CCCCCeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------
Q psy18211 1 MELWPALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------- 60 (127)
|+..++|+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~ 80 (228)
T PRK10584 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80 (228)
T ss_pred CCcCceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHH
Confidence 666678999999999975 25999999999999999999999999999999999952 2211
Q ss_pred -------eeeeeeeecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 -------KASDLISRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 -------~~i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+...|+.||+.+... ....+.+.++.... ...++.+.+||||||||++||+|
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~a 160 (228)
T PRK10584 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHH
Confidence 137899998766666799999876421 11122223322222 23345556699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 161 l~~ 163 (228)
T PRK10584 161 FNG 163 (228)
T ss_pred Hhc
Confidence 974
No 38
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-30 Score=187.93 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=94.3
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceee----------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKI---------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~---------------- 60 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|.. .+.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 5799999999999888999999999999999999999999999999999953 2222
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhhh
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..++..|+.||+.+.... ...+.+.++..... ..++...+||||||||++|||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 161 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL 161 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1278999998767778999999764310 11122233222221 23455667999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 162 ~~ 163 (250)
T PRK14247 162 AF 163 (250)
T ss_pred hc
Confidence 74
No 39
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.1e-30 Score=188.17 Aligned_cols=121 Identities=15% Similarity=0.039 Sum_probs=91.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------eeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KASD 64 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~i~ 64 (127)
|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 57899999999888999999999999999999999999999999999942 2222 1278
Q ss_pred eeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+|||||||||+|||||++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999988766667999999765321 1112222222222 22345556799999999999999974
No 40
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.6e-30 Score=186.36 Aligned_cols=126 Identities=17% Similarity=0.041 Sum_probs=94.5
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI--------------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~--------------- 60 (127)
|++ ++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 1 ~~~-~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 79 (237)
T PRK11614 1 MEK-VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79 (237)
T ss_pred CCc-cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHH
Confidence 666 6899999999999889999999999999999999999999999999999942 2221
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHHh----hhhHHHHHHHHhH----hhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEIIK----IQTVCKVKELGKK----ILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..+...|+.+|+.+... ......+.++... ....+....+||||||||++|||||+.
T Consensus 80 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred hCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 127899998776666799999976431 1111122221111 122344556799999999999999973
No 41
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.3e-30 Score=186.31 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=94.2
Q ss_pred CCCCCeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------
Q psy18211 1 MELWPALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------- 60 (127)
|.. |+|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 1 ~~~-~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~ 79 (233)
T PRK11629 1 MNK-ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSA 79 (233)
T ss_pred CCC-ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHH
Confidence 554 68999999999974 46999999999999999999999999999999999942 2211
Q ss_pred -------eeeeeeeecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 -------KASDLISRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 -------~~i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..++..|+.+|+.+... ....+.+.++.... ...++...+||||||||++||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 237899999776666799999976431 11112233322222 22345556699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|+.
T Consensus 160 l~~ 162 (233)
T PRK11629 160 LVN 162 (233)
T ss_pred Hhc
Confidence 974
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.8e-30 Score=185.44 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=91.8
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~q 68 (127)
|+++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|.. ++.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 57899999999889999999999999999999999999999999999953 22221 3789999
Q ss_pred cccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..+...|+.+++.+.... ...+.+.++.... ...++...+||||||||++||+||+.
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 98766667999999764311 1112222222222 23355556799999999999999974
No 43
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-30 Score=184.95 Aligned_cols=121 Identities=17% Similarity=0.092 Sum_probs=91.1
Q ss_pred eeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------eeeeeee
Q psy18211 7 LEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------ASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------~i~~~~q 68 (127)
|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 578999999987 68999999999999999999999999999999999953 23321 3789999
Q ss_pred cccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..+...|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 88766567999998765321 1112222222222 22344556699999999999999974
No 44
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=1.9e-30 Score=184.83 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=91.4
Q ss_pred eeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------
Q psy18211 7 LEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------------- 60 (127)
Q Consensus 7 l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------------- 60 (127)
|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 578999999986 68999999999999999999999999999999999942 2211
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+.+||||||||++|||||+.
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 1378999988776677999999875321 1112223322222 22345556699999999999999974
No 45
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.97 E-value=2.7e-30 Score=184.07 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=92.3
Q ss_pred eeeeceeEEEeCCC----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------ee
Q psy18211 6 ALEGREVILVARPE----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i 63 (127)
+|+++|+++.|+++ ++++++||+|++||+++|+|+||||||||+++|+|.. ++.++ .+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999876 7999999999999999999999999999999999953 23222 27
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh------hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI------QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..+...|+.||+.+.... .... .++.+... ...++...+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 8999998666667999998764321 1112 23333322 23345556699999999999999974
No 46
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.4e-30 Score=182.30 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=93.1
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~ 67 (127)
||+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 489999999999888999999999999999999999999999999999952 22221 277888
Q ss_pred ecccCCCCcchHHHHHHHHhh---hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI---QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++..|+.||+.+.... ...+ .++.+... ...++...+||||||||++||+||++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 887666667999999765421 1122 23333332 23355666799999999999999974
No 47
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=2.8e-30 Score=183.56 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=91.7
Q ss_pred eeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------ee
Q psy18211 6 ALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KA 62 (127)
Q Consensus 6 ~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~ 62 (127)
||+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 47899999999 4678999999999999999999999999999999999942 2221 13
Q ss_pred eeeeeecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++..++..|+.+|+.+... ......+.++.... ...++...+||||||||++|||||+.
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVN 154 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 7899998876666799999876531 11122233322222 22344555699999999999999974
No 48
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=180.62 Aligned_cols=122 Identities=12% Similarity=0.056 Sum_probs=98.5
Q ss_pred CeeeeceeEEEeCCCC--ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee---------eeeeee
Q psy18211 5 PALEGREVILVARPEP--NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA---------SDLISR 68 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~--~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~---------i~~~~q 68 (127)
+++.+++++.+|++++ +|+|+|++|.+||.++++||+||||||||++++|. |.+.+++ -|.+||
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 5799999999999887 99999999999999999999999999999999994 3344432 689999
Q ss_pred cccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+....+.+++.||+.+...- ...+...++.... ...++...+|||||||||.|||||.
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa 148 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALA 148 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhh
Confidence 99998899999999987632 1122223322222 3446777789999999999999985
No 49
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.5e-30 Score=187.97 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=92.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------eeeeeeeccc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------ASDLISRATT 71 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------~i~~~~q~~~ 71 (127)
||+++|+++.|+++.+++|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 489999999998888999999999999999999999999999999999953 33332 2689999877
Q ss_pred CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 72 SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 72 ~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++..|+.+|+.+.... .....+.++.... ...++.+.+||||||||++|||||++
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~ 145 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAA 145 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 66667999998764311 1112222222222 22345556699999999999999974
No 50
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.8e-30 Score=195.51 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=93.2
Q ss_pred eeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------------
Q psy18211 6 ALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------- 60 (127)
||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 589999999997 467999999999999999999999999999999999942 2222
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+.+||||||||++|||||++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 1389999998776678999999875421 1112223322222 23355566799999999999999974
No 51
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.5e-30 Score=186.03 Aligned_cols=122 Identities=17% Similarity=0.125 Sum_probs=92.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------eeeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------KASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------~~i~~~~q 68 (127)
+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 589999999999888999999999999999999999999999999999953 2222 13789999
Q ss_pred cccCCCCcchHHHHHHHHhh----------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI----------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++..|+.||+.+.... ...+.+.++.... ...++...+||+|||||++|||||+.
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 88766678999999764321 0112222222222 22345556699999999999999974
No 52
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.97 E-value=3.4e-30 Score=181.95 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=92.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~q 68 (127)
|+++|+++.|+++++++++||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 57899999999889999999999999999999999999999999999953 22221 3789998
Q ss_pred cccCCCCcchHHHHHHHHhhhhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKIQTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++..|+.||+.+....... +.++.+... ...++...+||||||||++|||||++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhc
Confidence 87766678999998765322122 223333332 22355556799999999999999974
No 53
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.4e-30 Score=182.70 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=91.8
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------eeeeeeeccc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------ASDLISRATT 71 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------~i~~~~q~~~ 71 (127)
++++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 57899999999888999999999999999999999999999999999953 23322 3789999987
Q ss_pred CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 72 SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 72 ~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+...|+.||+.+.... ...+.+.++.... ...++...+||||||||++||+||+.
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhc
Confidence 66667999998764321 1122222222222 22344555699999999999999974
No 54
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.97 E-value=1.8e-30 Score=205.58 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=92.5
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------eeeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------~i~~~ 66 (127)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|. |++.++ .++|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4899999999975 5699999999999999999999999999999999994 334443 37999
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++.. ++.|++||+.++.+...++.+.+..... .++ ...+.+||||||||++|||||++
T Consensus 414 ~Q~~~l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 414 AQDAHL-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred ccCccc-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 999754 6779999999865433333333222211 011 12345699999999999999975
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.97 E-value=4e-30 Score=182.59 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=91.7
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~ 69 (127)
|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 57899999999889999999999999999999999999999999999953 22221 37899998
Q ss_pred ccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..++..|+.||+.+.... ...+.+.++.... ...+....+||||||||++|||||++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 8766677999999765311 1112222222221 23355556699999999999999974
No 56
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.97 E-value=4.9e-30 Score=183.07 Aligned_cols=121 Identities=13% Similarity=0.026 Sum_probs=91.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------eeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI---------------KASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~---------------~~i~~~ 66 (127)
|+++|++++|+++++++++||++++||+++|+||||||||||+++|+|. |++.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 5789999999988899999999999999999999999999999999994 22222 127899
Q ss_pred eecccCCCCcchHHHHHHHHhh----hhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI----QTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.+|+.+.... ... +.++.+.......++...+||||||||++|||||++
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 149 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMS 149 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhc
Confidence 9998766667999999765321 111 122222111122345556699999999999999974
No 57
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.3e-30 Score=180.81 Aligned_cols=121 Identities=13% Similarity=0.020 Sum_probs=92.4
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~ 67 (127)
||+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 489999999999889999999999999999999999999999999999953 22221 278999
Q ss_pred ecccCCCCcchHHHHHHHHhh-h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI-Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++..|+.+|+.+.... . ..+.++.+... ...++...+||+|||||++|||||++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhc
Confidence 887666678999998865311 1 12222222222 22345555699999999999999974
No 58
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.97 E-value=3.8e-30 Score=182.84 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=89.8
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------eeeeeeecccCC
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------ASDLISRATTSP 73 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------~i~~~~q~~~~~ 73 (127)
+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++..+
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 4789999998888999999999999999999999999999999999953 33332 289999987653
Q ss_pred --CCcchHHHHHHHHhh----------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 74 --WPGTTLNLLKEIIKI----------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 74 --~~~t~~~~l~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++.|+.||+.+.... ...+.++++.... ...++...+||||||||++|||||+.
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 149 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQ 149 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 447999998764311 1122223322221 23345556799999999999999974
No 59
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.97 E-value=4.1e-30 Score=191.54 Aligned_cols=122 Identities=13% Similarity=0.049 Sum_probs=94.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~ 67 (127)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+|+|+|.. ++.++ .++|+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 489999999999899999999999999999999999999999999999952 22221 389999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++.+|+.||+.+.... ...+.++++...+ ...++....||+|||||++||+||++
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIH 150 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 998877778999999864421 1122333333222 22345556699999999999999974
No 60
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.97 E-value=4.6e-30 Score=185.11 Aligned_cols=122 Identities=14% Similarity=0.144 Sum_probs=92.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~ 67 (127)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 478999999999888999999999999999999999999999999999952 22221 378999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++..|+.+|+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 988776778999998764321 1112222222221 22345555699999999999999974
No 61
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=7.1e-30 Score=183.11 Aligned_cols=123 Identities=15% Similarity=0.045 Sum_probs=92.6
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
.++|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 45799999999999889999999999999999999999999999999999942 22221 378
Q ss_pred eeeecccCCCCcchHHHHHHHHh----hhhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK----IQTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+ +.|+.||+.+... ..... .++.+.......++...+||+|||||++|||||++
T Consensus 85 ~~~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 85 YCAQTPTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEecccccc-cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999987654 4699999876421 11112 22222221123355566799999999999999974
No 62
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.97 E-value=6e-30 Score=187.91 Aligned_cols=123 Identities=9% Similarity=0.025 Sum_probs=93.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------e
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------K 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~ 61 (127)
.++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 45899999999999888999999999999999999999999999999999942 2222 1
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh-----h--hHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI-----Q--TVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~--~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++..++..|+.||+.+.... . .... ++.+... ...++...+||||||||++|||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 378999987766667999998764321 0 0112 2222222 23345556799999999999999974
No 63
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=6.6e-30 Score=182.72 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=92.0
Q ss_pred eeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------ee
Q psy18211 6 ALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KA 62 (127)
Q Consensus 6 ~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~ 62 (127)
||+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 47899999999 6788999999999999999999999999999999999952 2222 12
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVN 154 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHc
Confidence 78999998766778999999765311 1111222222221 22345556799999999999999974
No 64
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.97 E-value=5.6e-30 Score=185.84 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=93.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-------------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------- 60 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred CcEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 4799999999999888999999999999999999999999999999999942 2211
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHh---h----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIK---I----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~---~----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.+... . ...+.+.++.... ...++...+||||||||++|||||+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 137899998876667899999976321 0 1112222222222 22345566799999999999999974
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=4.9e-30 Score=181.66 Aligned_cols=120 Identities=15% Similarity=0.063 Sum_probs=92.1
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~ 69 (127)
|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|.. ++.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 57899999998889999999999999999999999999999999999952 22221 37899998
Q ss_pred ccCCCCcchHHHHHHHHhh--hhHHHH----HHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI--QTVCKV----KELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..++..|+.||+.++... ...+.+ +.+... ...++...+|||||||||+|||||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhc
Confidence 8776678999999775421 112222 333222 22344555699999999999999974
No 66
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.97 E-value=5.4e-30 Score=185.13 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=91.4
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------------e
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-----------------A 62 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-----------------~ 62 (127)
||+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999998 788999999999999999999999999999999999942 22221 2
Q ss_pred eeeeeecccCCCCcchHHHHHHHHh--------------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhh
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIK--------------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
++|++|++..++..|+.+|+.+... ....+.+.++.... ...++...+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 7899998876667899999865311 01112222222221 233455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
+.
T Consensus 161 ~~ 162 (243)
T TIGR02315 161 AQ 162 (243)
T ss_pred hc
Confidence 74
No 67
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=184.33 Aligned_cols=126 Identities=12% Similarity=0.101 Sum_probs=93.9
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e----------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I---------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~---------- 60 (127)
|.--|+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. .+. +
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CCCCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 55557899999999999888999999999999999999999999999999999841 121 1
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..+. .|+.||+.+.... ...+.++.+..... ..++...+|||||||||+
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred CHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 13789999876544 6999999765321 11222222222211 234455669999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||+.
T Consensus 160 laral~~ 166 (253)
T PRK14242 160 IARALAV 166 (253)
T ss_pred HHHHHhc
Confidence 9999974
No 68
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=8e-30 Score=186.24 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=93.3
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~~ 66 (127)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|.. ++.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 689999999999888999999999999999999999999999999999952 22221 27899
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+|++..++..|+.||+.+.... .....+..+.... ...++...+||||||||++||+||+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9998777778999998764311 1112222222221 2335556679999999999999997
No 69
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=4e-30 Score=181.86 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=89.9
Q ss_pred eeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------eeeeeeecc
Q psy18211 8 EGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-----------ASDLISRAT 70 (127)
Q Consensus 8 ~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-----------~i~~~~q~~ 70 (127)
+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|.. ++.++ .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 46899999987 88999999999999999999999999999999999953 22221 378999986
Q ss_pred cC-CCCcchHHHHHHHHhhh------hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TS-PWPGTTLNLLKEIIKIQ------TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~-~~~~t~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.. .++.|+.||+.+..... ..+.++.+... ...++.+.+||||||||++|||||+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHh
Confidence 43 34679999997654211 12223333332 23355556799999999999999973
No 70
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.97 E-value=4.2e-30 Score=185.04 Aligned_cols=121 Identities=16% Similarity=0.070 Sum_probs=91.4
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~~~ 66 (127)
|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|. |++.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4789999999888899999999999999999999999999999999994 222221 27899
Q ss_pred eecccCCCCcchHHHHHHHHhh----------------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI----------------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~----------------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9998776677999998765321 0111222222222 22345556799999999999999974
No 71
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.7e-30 Score=185.02 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=93.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------eeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------KASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~~i~ 64 (127)
++++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred ceEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4799999999999889999999999999999999999999999999999942 2222 1378
Q ss_pred eeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+...|+.||+.+.... .....+.++.... ...+....+||||||||++|||||++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 999988766667999998764210 1112222222221 22345556699999999999999974
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.8e-30 Score=183.73 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=92.1
Q ss_pred eeeeceeEEEeCCC----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee----------------
Q psy18211 6 ALEGREVILVARPE----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI---------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~---------------- 60 (127)
||+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999876 899999999999999999999999999999999994 22222
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.+.... .....+.++.... ...++...+||||||||++||+||++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1378999998766668999998764321 1112222222222 23345556799999999999999974
No 73
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=6.4e-30 Score=184.77 Aligned_cols=123 Identities=13% Similarity=0.045 Sum_probs=93.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------eeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI---------------KASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~---------------~~i~ 64 (127)
++|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|. |++.+ ..++
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 378999999999888899999999999999999999999999999999994 22222 1378
Q ss_pred eeeecccCCCCcchHHHHHHHHhh--------------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI--------------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.||+.+.... .....+..+.... ...++...+||||||||++|||||++
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~ 160 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ 160 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999988776677999998764310 0112223222222 22345556699999999999999974
No 74
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.97 E-value=5.4e-30 Score=183.58 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=90.5
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----cee-----e----------------
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCK-----I---------------- 60 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~-----~---------------- 60 (127)
|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|.. .+. +
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999889999999999999999999999999999999999964 321 1
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHHhh------h-hHHHHHHHHhHh----hhcccC-CCCCCcccchhhhhHhhhhC
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEIIKI------Q-TVCKVKELGKKI----LLSQVK-GKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~-~~~~~~~~~~~~----~~~~~~-~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..+ ..|+.||+.+.... . .++.+.++.... ...+.+ +.+||||||||++|||||++
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 1278999987665 78999999764321 0 122233322222 122333 46799999999999999974
No 75
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.97 E-value=6.6e-30 Score=182.29 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=91.4
Q ss_pred eeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeee
Q psy18211 7 LEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~ 66 (127)
|+++|+++.|++ +++|+++||++++||+++|+||||||||||+++|+|.. ++.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999987 78999999999999999999999999999999999953 22221 27899
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..+...|+.+|+.+.... ...+.+.++.... ...+....+||+|||||++|||||+.
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9988766678999998764321 1112222322222 23345556799999999999999874
No 76
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.97 E-value=8.9e-30 Score=182.80 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=91.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~~~ 66 (127)
|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 57899999999889999999999999999999999999999999999942 22221 37899
Q ss_pred eecccCCCCcchHHHHHHHHhhh--h-----HHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQ--T-----VCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.+|+.+..... . .+.++.+.......++...+||||||||++|||||++
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVT 148 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99987666679999997654211 1 1122222211123455566799999999999999974
No 77
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=9.2e-30 Score=181.65 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee----------------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI---------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~---------------- 60 (127)
+|+++|+++.|++ +++++++||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999974 4699999999999999999999999999999999994 22221
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..+...|+.||+.+... ....+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 158 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVN 158 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhC
Confidence 237899998766667799999876421 11112222222222 22345556699999999999999974
No 78
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=6.8e-30 Score=183.50 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=91.4
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------eeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------KASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~~i~~~ 66 (127)
|+++|+++.|+++++|+++||++++||+++|+||||||||||+++|+|.. ++.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 57899999999888999999999999999999999999999999999942 2222 127899
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.||+.+.... .....+..+.... ...++...+||||||||++|||||++
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9988766667999999865321 1111222222222 22345556799999999999999974
No 79
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=7.3e-30 Score=181.04 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=89.0
Q ss_pred eeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeeee
Q psy18211 8 EGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDLI 66 (127)
Q Consensus 8 ~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~~ 66 (127)
+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|. |++.++ .++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999987 7899999999999999999999999999999999994 222221 27899
Q ss_pred eecccC-CCCcchHHHHHHHHhh------hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTS-PWPGTTLNLLKEIIKI------QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~-~~~~t~~~~l~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++.. .++.|+.+|+.+.... .... .++.+... ...++...+||||||||++|||||++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~ 151 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAM 151 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 998643 4567999998764321 1112 22222222 22345556699999999999999974
No 80
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=183.62 Aligned_cols=123 Identities=13% Similarity=0.038 Sum_probs=92.6
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~------------- 60 (127)
.++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|... + .+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 458999999999998889999999999999999999999999999999999432 2 11
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+ +.|+.||+.+.... ..++.+....... ...++...+||||||||++|||
T Consensus 85 ~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 1278999987654 58999999865321 1112222222111 1234556679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 164 al~~ 167 (254)
T PRK14273 164 TLAI 167 (254)
T ss_pred HHHc
Confidence 9974
No 81
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=1.4e-29 Score=179.78 Aligned_cols=121 Identities=15% Similarity=0.063 Sum_probs=91.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------------eeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------------KASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------------~~i~~ 65 (127)
++++|+++.|+++++++++||++++||+++|+||||||||||+++|+|.. ++.+ ..++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999888999999999999999999999999999999999942 2221 12789
Q ss_pred eeecccCCCCcchHHHHHHHHh-------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIK-------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..++..|+.||+.+... ....+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhc
Confidence 9999876667899999876421 11112222222221 23355556799999999999999974
No 82
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.1e-30 Score=184.72 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=91.7
Q ss_pred eeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeeee
Q psy18211 7 LEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~~ 66 (127)
++++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|. |++.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999988 7899999999999999999999999999999999994 222221 37899
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHhh-----hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKIL-----LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..++..|+.||+.+.... ...+.+.++..... ..++...+||||||||++|||||++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 9988766678999999764311 11122222222211 3355566799999999999999974
No 83
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=183.14 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=94.4
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceee----------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKI---------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~---------- 60 (127)
|.+.++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 1 ~~~~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred CCccceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 6677899999999999988999999999999999999999999999999999984 21111
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..+. .|+.||+.+.... ..++.+.++.... ...++...+||+|||||++
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLC 159 (253)
T ss_pred chhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHH
Confidence 12789999876554 5999999864321 1112222222111 1234555669999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||+.
T Consensus 160 laral~~ 166 (253)
T PRK14261 160 IARTLAV 166 (253)
T ss_pred HHHHHhc
Confidence 9999974
No 84
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-29 Score=183.75 Aligned_cols=121 Identities=16% Similarity=0.093 Sum_probs=91.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~~ 66 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 689999999998888999999999999999999999999999999999942 22221 27899
Q ss_pred eecccCCCCcchHHHHHHHHhh--h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI--Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..+ +.++.+|+.+.... . ..+.++.+.......++...+||||||||++|||||++
T Consensus 83 ~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 83 FQQPHLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred ecCchhc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9987544 56999998753211 1 12223333322123355566799999999999999974
No 85
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=182.23 Aligned_cols=125 Identities=14% Similarity=0.084 Sum_probs=92.8
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e----------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I---------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~---------- 60 (127)
|+. ++|+++|++++|+++++++++||+|++||+++|+||||||||||+++|+|.. .++ +
T Consensus 1 ~~~-~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 1 MTE-PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred CCC-ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 533 5899999999999888999999999999999999999999999999999852 121 1
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..+ +.|+.||+.+.... ...+.+..+.... ...++...+||+|||||++
T Consensus 80 ~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVC 158 (252)
T ss_pred chHhhhhcEEEEecCCccC-cCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHH
Confidence 1378999987654 47999999865321 0112222222111 1234555679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||+.
T Consensus 159 laral~~ 165 (252)
T PRK14239 159 IARVLAT 165 (252)
T ss_pred HHHHHhc
Confidence 9999974
No 86
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-29 Score=183.88 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=93.9
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------- 61 (127)
|. .++|+++|+++.|+++++|+++||++++||+++|+||||||||||+++|+|. |++.++
T Consensus 1 ~~-~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (255)
T PRK11300 1 MS-QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIAR 79 (255)
T ss_pred CC-CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHh
Confidence 54 3589999999999988999999999999999999999999999999999995 222221
Q ss_pred -eeeeeeecccCCCCcchHHHHHHHHhh---------------------hhHHHHH----HHHhHhhhcccCCCCCCccc
Q psy18211 62 -ASDLISRATTSPWPGTTLNLLKEIIKI---------------------QTVCKVK----ELGKKILLSQVKGKNMSKTE 115 (127)
Q Consensus 62 -~i~~~~q~~~~~~~~t~~~~l~~~~~~---------------------~~~~~~~----~~~~~~~~~~~~~~~LSgGe 115 (127)
.++|++|++..++..|+.+|+.+.... .....+. .++.. ...++...+|||||
T Consensus 80 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~ 158 (255)
T PRK11300 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQ 158 (255)
T ss_pred cCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHH
Confidence 267889988777677999998864210 0011122 22222 23355556799999
Q ss_pred chhhhhHhhhhC
Q psy18211 116 KKPLQPQYSLIK 127 (127)
Q Consensus 116 kqrv~ia~aL~~ 127 (127)
|||++||+||++
T Consensus 159 ~qrv~la~al~~ 170 (255)
T PRK11300 159 QRRLEIARCMVT 170 (255)
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 87
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=186.71 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=94.2
Q ss_pred CCCCCeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee--------------
Q psy18211 1 MELWPALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI-------------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~-------------- 60 (127)
|+. ++|+++|++++|+ ++++|+++||+|++||+++|+|+||||||||+++|+|. |++.+
T Consensus 1 ~~~-~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 1 MED-YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred CCC-ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 555 5899999999996 57899999999999999999999999999999999994 22222
Q ss_pred --eeeeeeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 --KASDLISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 --~~i~~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++.. .++.|+.||+.+.... ...+.+..+.... ...++...+||||||||++|||||+.
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 127999998743 3567999999764321 1112223322222 23456666799999999999999974
No 88
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.6e-29 Score=182.64 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=91.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------------eee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------------~i~ 64 (127)
+|+++|+++.|+++++|+|+||++++||+++|+|+||||||||+++|+|.. ++.++ .++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 478999999999888999999999999999999999999999999999942 22211 278
Q ss_pred eeeecccCCCCcchHHHHHHHHh-------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK-------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.+|+.+... ....+.+.++.... ...++...+||+|||||++|||||++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~ 153 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAV 153 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhc
Confidence 99998876667799999876421 01112222222221 22345556699999999999999974
No 89
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.7e-29 Score=182.61 Aligned_cols=123 Identities=19% Similarity=0.095 Sum_probs=92.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--e--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--I-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~-------------- 60 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|..+ +. +
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 48999999999998889999999999999999999999999999999999532 21 1
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+...|+.+|+.+.... .....+.++.... ...+....+||||||||++|||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 1278999987766667999999764311 1112222222221 1234455669999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 163 al~~ 166 (253)
T PRK14267 163 ALAM 166 (253)
T ss_pred HHhc
Confidence 9974
No 90
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.8e-29 Score=183.18 Aligned_cols=122 Identities=9% Similarity=0.061 Sum_probs=92.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--e---------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--I--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~--------------- 60 (127)
+++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|... +. +
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 7999999999998889999999999999999999999999999999999532 21 1
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|+...+...|+.+|+.+.... ..++.+.++.... ...+....+||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1278999987766667999999764321 1112223322221 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 164 ~~ 165 (258)
T PRK14241 164 AV 165 (258)
T ss_pred hc
Confidence 74
No 91
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=186.04 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=92.1
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
+|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 799999999996 567999999999999999999999999999999999952 23221 2799
Q ss_pred eeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++. ..+..|+.+|+.+.... ...+.+.++.... ...++.+.+||||||||++|||||+.
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~ 155 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAM 155 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999864 34567999999864321 1112223322221 23455566799999999999999974
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.9e-29 Score=185.94 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=91.3
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------- 60 (127)
+|+++|+++.|++ +++|+||||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999974 4699999999999999999999999999999999994 22222
Q ss_pred -eeeeeeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 -KASDLISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 -~~i~~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|+||++.. .++.|+.||+.+.... ...+.+.++.... ...++.+.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 127899998643 3467999999865321 1112223332222 23456666799999999999999974
No 93
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=182.33 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=90.7
Q ss_pred eeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------eee
Q psy18211 7 LEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KAS 63 (127)
Q Consensus 7 l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~i 63 (127)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 78999999999999999999999999999999999942 2222 137
Q ss_pred eeeeecccCCCCcchHHHHHHHHh--------------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIK--------------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+|++|++..++..|+.+|+.+... ....+.+.++.... ...++...+||||||||++|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 899998876666899999875321 01112222222222 2334555679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 161 ~ 161 (241)
T cd03256 161 Q 161 (241)
T ss_pred c
Confidence 4
No 94
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.2e-29 Score=184.00 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=91.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--e--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--I-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~-------------- 60 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|... +. +
T Consensus 12 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred ceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 37999999999998889999999999999999999999999999999999631 21 1
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+ +.|+.+|+.+.... ...+.+.++.... ...++...+||||||||++||||
T Consensus 92 ~~~~i~~~~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 170 (260)
T PRK10744 92 LRAKVGMVFQKPTPF-PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170 (260)
T ss_pred HhcceEEEecCCccC-cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 1278999987654 47999998764321 1112222222221 12344556699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 171 l~~ 173 (260)
T PRK10744 171 IAI 173 (260)
T ss_pred HHC
Confidence 974
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=2e-29 Score=179.03 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=90.8
Q ss_pred eeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------eee
Q psy18211 7 LEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KAS 63 (127)
Q Consensus 7 l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~i 63 (127)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|.. ++.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 68999999999999999999999999999999999952 2221 127
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHc
Confidence 8999988766667999999875321 1112222222221 23345556699999999999999974
No 96
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=1.7e-29 Score=180.77 Aligned_cols=122 Identities=16% Similarity=0.072 Sum_probs=89.2
Q ss_pred eeeeceeEEEeCCC----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------------
Q psy18211 6 ALEGREVILVARPE----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------- 60 (127)
+|+++|+++.|+++ ++|+++||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999865 7999999999999999999999999999999999942 2211
Q ss_pred -eeeeeeeeccc--CCCCcchHHHHHHHHhh----hhH---HHH-HHHHhHh----hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATT--SPWPGTTLNLLKEIIKI----QTV---CKV-KELGKKI----LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~--~~~~~t~~~~l~~~~~~----~~~---~~~-~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++. .....|+.+|+.+.... ... +.. .++.... ...+....+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 13789999873 34467999998754311 011 111 1222221 123455566999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 161 ~~ 162 (228)
T cd03257 161 AL 162 (228)
T ss_pred hc
Confidence 74
No 97
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=184.37 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=93.6
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
++|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 4799999999998888999999999999999999999999999999999952 23221 2789
Q ss_pred eeecccCCCCcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|+...++..++.+|+.+... ....+.+..+.... ...++...+||||||||++|||||+.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 164 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQ 164 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9998766667799999876321 11112223222222 23355556699999999999999974
No 98
>KOG0058|consensus
Probab=99.96 E-value=6.7e-30 Score=203.72 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=95.8
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee--------------e
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA--------------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~--------------i 63 (127)
.|+++||+|.|+. .++|+|+||+|+|||+++|+||||+||||+.++|.... .+.+++ |
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 5899999999975 56999999999999999999999999999999999953 333332 8
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhH---h-----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKK---I-----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+|.|+|.. |..|++||+.+......++.+...... + ....+.+.+||||||||++|||||++
T Consensus 545 g~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 545 GLVGQEPVL-FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred eeeecccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 999999875 577999999998765444443332211 1 11234566899999999999999985
No 99
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=181.05 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=95.7
Q ss_pred CeeeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------eee
Q psy18211 5 PALEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------KAS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~~i 63 (127)
++++++|+++.|++. .+++|+||+|++||.++|+|+||||||||+++++|.. .+.+ ..+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 479999999999775 8999999999999999999999999999999999953 2222 128
Q ss_pred eeeeecccCCC-CcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPW-PGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~-~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++|++..++ ..||.+.+.+.... ..++++++..... ...++.+.+|||||||||+||.+|+.
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~ 155 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAM 155 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHc
Confidence 99999997765 44899988886531 2233344433332 23466666799999999999999863
No 100
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.96 E-value=3e-29 Score=181.96 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eee-----------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKI----------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~----------------- 60 (127)
+|+++|++++|+++.+++|+||+|++||+++|+|+||||||||+++|+|... +.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 4789999999998889999999999999999999999999999999999532 211
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|+||++..+. .|+.||+.+.... ...+.+..+.... ...++...+||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 12789999876554 8999999764321 1112222222221 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 160 ~~ 161 (247)
T TIGR00972 160 AV 161 (247)
T ss_pred hc
Confidence 74
No 101
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.8e-30 Score=183.90 Aligned_cols=122 Identities=20% Similarity=0.087 Sum_probs=95.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~---------------~i~ 64 (127)
+++++++++++||+-.+++||||++++||+++||||||||||||+|+|+|...+ .+. +++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 689999999999999999999999999999999999999999999999995332 222 266
Q ss_pred eeeecccCCCCcchHHHHHHHHh------------------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK------------------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~------------------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~ 123 (127)
--||.+..+..+||.||+..... ....+....+.... ...+++..+||+|||+|+.|||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 67899888889999999987532 01112222222222 2345566679999999999999
Q ss_pred hhh
Q psy18211 124 SLI 126 (127)
Q Consensus 124 aL~ 126 (127)
||+
T Consensus 163 ALa 165 (250)
T COG0411 163 ALA 165 (250)
T ss_pred HHh
Confidence 986
No 102
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.7e-29 Score=178.13 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=92.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-----------eeeeeeec
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-----------ASDLISRA 69 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-----------~i~~~~q~ 69 (127)
+|+++|+++.|+++.+++++||+|++||+++|+|+||||||||+++|+|. |++.++ .++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 68999999999988899999999999999999999999999999999995 333222 26788877
Q ss_pred ccCCCCcchHHHHHHHHhh--h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI--Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
...++..|+.+|+.+.... . ..+.++.+... ...+....+||+|||||++|||||++
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhc
Confidence 6666678999998764321 1 12233333333 23355556799999999999999974
No 103
>KOG0057|consensus
Probab=99.96 E-value=9.8e-30 Score=197.81 Aligned_cols=121 Identities=21% Similarity=0.229 Sum_probs=96.7
Q ss_pred eeeeceeEEEeCCCC-ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc----CCceeeee--------------eeee
Q psy18211 6 ALEGREVILVARPEP-NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ----SDLCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~-~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g----~~~~~~~~--------------i~~~ 66 (127)
.|+++|+++.|+++. +|+++||+|++||++||+|+|||||||++|+|.+ .|++.+++ |||+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEe
Confidence 489999999999876 9999999999999999999999999999999999 45666654 8999
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhh--------------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKIL--------------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+... |+.|+..|+.++.....++++.+...... ..-..+..|||||||||+||||+++
T Consensus 431 PQd~~L-FndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 431 PQDSVL-FNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred CCcccc-cchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 999754 56699999999876554443333222211 1223445699999999999999975
No 104
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-29 Score=182.14 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=91.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~-------------- 60 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. .+. +
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 5899999999999888999999999999999999999999999999999842 122 1
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+. .++.||+.+.... ...+.+.++.... ...+....+||||||||++||||
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lara 169 (259)
T PRK14274 91 LRKNIGMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARA 169 (259)
T ss_pred HhhceEEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 12789999876554 5999998764321 0111222222211 12345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 170 l~~ 172 (259)
T PRK14274 170 LAT 172 (259)
T ss_pred Hhc
Confidence 974
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=183.14 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=93.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-------------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------- 60 (127)
.+|+++|+++.|+++++++++||+|++||+++|+|+||||||||+++|+|.. ++.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 4799999999999889999999999999999999999999999999999942 2111
Q ss_pred --------eeeeeeeecccCCCCcchHHHHHHHHh-------hhhHHHHHH----HHhHhhhcccCCCCCCcccchhhhh
Q psy18211 61 --------KASDLISRATTSPWPGTTLNLLKEIIK-------IQTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 61 --------~~i~~~~q~~~~~~~~t~~~~l~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~i 121 (127)
..++|++|++..+...++.||+.+... ......+.+ ++......++...+||||||||++|
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 137999998876666799999875321 111222222 2222122245566799999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
||||++
T Consensus 164 aral~~ 169 (257)
T PRK10619 164 ARALAM 169 (257)
T ss_pred HHHHhc
Confidence 999974
No 106
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.7e-29 Score=183.03 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=92.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~~ 66 (127)
+|+++|++++|+++++|+++||++++||+++|+|+||||||||+++|+|.. ++.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 589999999999889999999999999999999999999999999999952 22221 28899
Q ss_pred eecccCCCCcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|+...+...|+.||+.+... ......+..+.... ...++...+||||||||++|||||+.
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 998776666799999876310 11112222222221 23355666799999999999999974
No 107
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.8e-29 Score=201.22 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=70.7
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCC
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~ 75 (127)
++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+. .++|++|++..++.
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 84 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPE 84 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 5899999999998 788999999999999999999999999999999999953 33332 48999999877667
Q ss_pred cchHHHHHHH
Q psy18211 76 GTTLNLLKEI 85 (127)
Q Consensus 76 ~t~~~~l~~~ 85 (127)
.|+.||+.+.
T Consensus 85 ~tv~e~l~~~ 94 (556)
T PRK11819 85 KTVRENVEEG 94 (556)
T ss_pred CcHHHHHHHh
Confidence 7999998753
No 108
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=182.41 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=92.2
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~------------- 60 (127)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|... + .+
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 468999999999998889999999999999999999999999999999999532 2 11
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+. .|+.+|+.+.... ...+.+.++.... ...++...+||||||||++||||
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 12789999876544 8999999865321 1111222222221 12345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|+.
T Consensus 169 l~~ 171 (258)
T PRK14268 169 LAV 171 (258)
T ss_pred HHc
Confidence 974
No 109
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4e-29 Score=181.53 Aligned_cols=125 Identities=12% Similarity=0.094 Sum_probs=93.9
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee----------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI---------- 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~---------- 60 (127)
|+. +|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+|+|+|... + .+
T Consensus 1 ~~~--~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 1 MTL--LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred CeE--EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 665 7999999999998899999999999999999999999999999999999521 2 11
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHhh----h---hHHHHHHHHhHh-------hhcccCCCCCCcccchhhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIKI----Q---TVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~~----~---~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..+...|+.||+.+.... . ..+.+.+..... ...++...+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 158 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLC 158 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHH
Confidence 1378999998766667999999764321 1 111222211111 1234556679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||++
T Consensus 159 laral~~ 165 (252)
T PRK14272 159 IARALAV 165 (252)
T ss_pred HHHHHhc
Confidence 9999974
No 110
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=183.50 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=94.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
..+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 34799999999999888999999999999999999999999999999999952 22221 278
Q ss_pred eeeecccCCCCcchHHHHHHHH-h---------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEII-K---------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~-~---------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..++.+|+.+.. . ......+.++.... ...++...+||||||||++|||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhc
Confidence 9999987777789999987531 0 11111222222221 23455666799999999999999974
No 111
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=2.3e-29 Score=177.24 Aligned_cols=120 Identities=12% Similarity=0.084 Sum_probs=91.0
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~q 68 (127)
|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 57899999999989999999999999999999999999999999999953 22221 2678888
Q ss_pred cccCCCCcchHHHHHHHHhhh------hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKIQ------TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+...++..|+.+|+.+..... ..+.++.+... ...++...+||+|||||++|||||++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhc
Confidence 766655679999987653211 11222223322 23345556699999999999999974
No 112
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.4e-29 Score=178.39 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=93.3
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-----------eeeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-----------ASDLISR 68 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-----------~i~~~~q 68 (127)
++|+++|++++|+++++++++||++++||+++|+|+||||||||+++|+|. |++.++ .++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 479999999999988899999999999999999999999999999999995 333332 2789998
Q ss_pred cccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+..+...|+.||+.+.... ..++...++.... ...+....+||+|||||++|||||++
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 87665566999998764321 1122222222222 22355556699999999999999974
No 113
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=1.1e-29 Score=175.37 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=93.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA------------SDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~------------i~~~~q 68 (127)
|+.+++|.+.|+..+ -.++++|++||+++|+||+||||||||++|+|. |.+.+++ +.++||
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 478899999998765 458899999999999999999999999999994 3344433 788999
Q ss_pred cccCCCCcchHHHHHHHHh------h----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIK------I----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.+.+...||.+|+.+... . ..+..+.+.+... ..++.+.+|||||||||+|||+|++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~-~~~RLP~~LSGGqRQRvALARclvR 146 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAG-FLKRLPGELSGGQRQRVALARCLVR 146 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhh-HhhhCccccCchHHHHHHHHHHHhc
Confidence 9999889999999987652 1 1223344444443 4455555699999999999999975
No 114
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.2e-29 Score=180.94 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=91.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~-------------- 60 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 689999999999988899999999999999999999999999999999873 22211
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+ +.|+.+|+.+.... .....+.++..... ..+....+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPF-PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccC-cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 1278999987654 46999999764321 11122222222211 2344556699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 161 l~~ 163 (250)
T PRK14245 161 MAV 163 (250)
T ss_pred Hhc
Confidence 974
No 115
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.5e-29 Score=184.39 Aligned_cols=122 Identities=15% Similarity=0.027 Sum_probs=91.2
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------eeee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------KASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~~i~ 64 (127)
|++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 577999999999999999999999999999999999952 2222 1278
Q ss_pred eeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++..|+.+|+.+.... ...+.+.++.... ...++....||+|||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 99998753 4567999999764321 1122233322222 23455666799999999999999974
No 116
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.3e-29 Score=185.83 Aligned_cols=122 Identities=15% Similarity=0.060 Sum_probs=90.8
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------- 60 (127)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 5699999999999999999999999999999999994 22222
Q ss_pred ---eeeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 ---KASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 ---~~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..++|++|++. ..++.|+.+|+.+.... ...+.++++.... .+.++.+.+|||||||||+|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 13789999863 23467999999865321 1112223222222 2335566679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
.
T Consensus 162 ~ 162 (290)
T PRK13634 162 M 162 (290)
T ss_pred c
Confidence 4
No 117
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.3e-29 Score=198.85 Aligned_cols=124 Identities=15% Similarity=0.081 Sum_probs=95.2
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------ee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------AS 63 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i 63 (127)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 45899999999999889999999999999999999999999999999999952 22221 27
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh--hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI--QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~--~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+|||||||||+|||||+.
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~ 157 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMR 157 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHc
Confidence 8999998777778999998764321 1122223222222 22345556699999999999999974
No 118
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=3.4e-29 Score=188.85 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=92.4
Q ss_pred CCeeeeceeEEEeCC-------------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----
Q psy18211 4 WPALEGREVILVARP-------------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~-------------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----- 60 (127)
.++|+++||++.|+. ..+++|+||+|++||+++|+|+||||||||+++|+|.. ++.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999962 46999999999999999999999999999999999942 2222
Q ss_pred ------------eeeeeeeecc--cCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHh----hhcccCCCCCCcc
Q psy18211 61 ------------KASDLISRAT--TSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKI----LLSQVKGKNMSKT 114 (127)
Q Consensus 61 ------------~~i~~~~q~~--~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~----~~~~~~~~~LSgG 114 (127)
..++|++|++ ...+.+|+.+|+.+.... ...+.+.++.... ...++.+.+||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 1389999997 344467999998754311 1112222222222 2345666779999
Q ss_pred cchhhhhHhhhhC
Q psy18211 115 EKKPLQPQYSLIK 127 (127)
Q Consensus 115 ekqrv~ia~aL~~ 127 (127)
|||||+|||||+.
T Consensus 166 ~~QRv~iArAL~~ 178 (331)
T PRK15079 166 QCQRIGIARALIL 178 (331)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999974
No 119
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.4e-29 Score=183.50 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=92.5
Q ss_pred CCeeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------e
Q psy18211 4 WPALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------A 62 (127)
Q Consensus 4 ~~~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~ 62 (127)
.++++++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46899999999995 568999999999999999999999999999999999952 22221 2
Q ss_pred eeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++. .++..|+.||+.+.... .....+.++.... ...++...+||||||||++|||||+.
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 789999864 44567999999764321 1111222222222 23355556799999999999999974
No 120
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=6.5e-29 Score=181.26 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=90.0
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Ccee----------e--------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCK----------I-------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~----------~-------- 60 (127)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|. |++. +
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 3589999999999888899999999999999999999999999999999994 2211 1
Q ss_pred -----eeeeeeeeccc--CCCCcchHHHHHHHHh-------hhhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhH
Q psy18211 61 -----KASDLISRATT--SPWPGTTLNLLKEIIK-------IQTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 61 -----~~i~~~~q~~~--~~~~~t~~~~l~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia 122 (127)
..++|++|++. .....++.+++.+... ..... .++.+.......++.+.+||||||||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 13789999874 2334577887754321 01111 222222211123455667999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||++
T Consensus 164 ral~~ 168 (258)
T PRK11701 164 RNLVT 168 (258)
T ss_pred HHHhc
Confidence 99974
No 121
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.4e-29 Score=184.91 Aligned_cols=122 Identities=20% Similarity=0.126 Sum_probs=90.3
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~--------------- 60 (127)
+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5899999999974 46999999999999999999999999999999999942 2211
Q ss_pred ---eeeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 ---KASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 ---~~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..++|++|++. ..++.|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 13789999863 34467999999764321 1112223322222 2335556679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
.
T Consensus 162 ~ 162 (287)
T PRK13641 162 Y 162 (287)
T ss_pred c
Confidence 4
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.1e-29 Score=180.66 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee--------------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-------------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-------------------- 60 (127)
+|+++|+++.|+++.+|+++||++++||+++|+||||||||||+++|+|.. ++.+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 589999999999889999999999999999999999999999999999942 2211
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHH-h------hhhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEII-K------IQTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~-~------~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.... . ..... .++.++.. ...++...+||||||||++|||||+.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 13789999887766789999986421 1 01111 22222222 23355556799999999999999974
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.6e-29 Score=186.91 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=90.7
Q ss_pred eeeeceeEEEeCCC-----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------
Q psy18211 6 ALEGREVILVARPE-----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------- 60 (127)
+|+++|++++|++. .+|+|+||+|++||+++|+|+||||||||+++|+|. |++.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 599999999999999999999999999999999994 22222
Q ss_pred -----------------------eeeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHH----HHhHhhhccc
Q psy18211 61 -----------------------KASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKE----LGKKILLSQV 106 (127)
Q Consensus 61 -----------------------~~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~----~~~~~~~~~~ 106 (127)
..++|+||++. ..+..|+.||+.+.... ...+.+.+ ++......++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12789999863 34456999999865421 11222233 3322123455
Q ss_pred CCCCCCcccchhhhhHhhhhC
Q psy18211 107 KGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 107 ~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+.+||||||||++||+||++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~ 182 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAM 182 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHh
Confidence 666799999999999999974
No 124
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=4.6e-29 Score=178.48 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCC-------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee-------------
Q psy18211 6 ALEGREVILVARP-------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~-------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~------------- 60 (127)
||+++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4889999999963 4699999999999999999999999999999999994 32222
Q ss_pred ---------eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhh
Q psy18211 61 ---------KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 61 ---------~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~i 121 (127)
..++|++|++..++..++.|++.+.... ...+.+.++.... ...+....+||+|||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 1378999998777777999998764311 1122222222222 12345566799999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
||||++
T Consensus 161 aral~~ 166 (224)
T TIGR02324 161 ARGFIA 166 (224)
T ss_pred HHHHhc
Confidence 999974
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.9e-29 Score=184.07 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=92.2
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------ee
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i 63 (127)
++|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 58999999999974 57999999999999999999999999999999999953 22221 27
Q ss_pred eeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++. .++..|+.||+.+.... ...+.+..+.... ...++.+.+||||||||++|||||+.
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 157 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLAL 157 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999874 45567999999764311 1112222222221 23445556799999999999999974
No 126
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=3.5e-29 Score=183.03 Aligned_cols=123 Identities=12% Similarity=0.073 Sum_probs=93.3
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc------eee------------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL------CKI------------------ 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~------~~~------------------ 60 (127)
++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|... +++
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 58999999999998999999999999999999999999999999999999532 111
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHh--------------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIK--------------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..++..|+.+|+.+... ......+.++.... ...++...+||+|||||++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 126899998876666799999975421 01111222222222 2335555679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||+.
T Consensus 163 laral~~ 169 (262)
T PRK09984 163 IARALMQ 169 (262)
T ss_pred HHHHHhc
Confidence 9999873
No 127
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=180.52 Aligned_cols=121 Identities=13% Similarity=0.124 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceeee--------------ee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKIK--------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~~--------------~i 63 (127)
+++++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 589999999999888999999999999999999999999999999999952 12221 27
Q ss_pred eeeeecccCCCCcchHHHHHHHHh--------hhhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIK--------IQTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~--------~~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..+ +.|+.||+.+... ...++.+..+..... ..+....+||+|||||++|||||++
T Consensus 82 ~~~~q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 159 (246)
T PRK14269 82 GMVFQQPNVF-VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI 159 (246)
T ss_pred EEEecCCccc-cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999997655 4799999876421 111122222222222 2344556699999999999999974
No 128
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=3.7e-29 Score=180.66 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=89.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-------ceeee---------------eee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-------LCKIK---------------ASD 64 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-------~~~~~---------------~i~ 64 (127)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 57899999999888999999999999999999999999999999999962 12111 267
Q ss_pred eeeecccCCCCcchHHHHHHHHhh----------h---hHHHHHHHHhHh----hhcccCCC-CCCcccchhhhhHhhhh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI----------Q---TVCKVKELGKKI----LLSQVKGK-NMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~----------~---~~~~~~~~~~~~----~~~~~~~~-~LSgGekqrv~ia~aL~ 126 (127)
|++|++..+...|+.+++.+.... . ..+.+.++.... ...++... +||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 889988776677899988654211 0 011222222222 12234443 49999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
.
T Consensus 161 ~ 161 (243)
T TIGR01978 161 L 161 (243)
T ss_pred c
Confidence 4
No 129
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=1.6e-29 Score=204.97 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=93.7
Q ss_pred eeeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeee--------------ee
Q psy18211 6 ALEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~--------------i~ 64 (127)
.++++|++++|+.. .+|+|+|++|++||++||+|+||||||||+|+|+|..+ +.+++ ++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 58999999999865 69999999999999999999999999999999999543 44433 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHH-HHhH---h----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKE-LGKK---I----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-~~~~---~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++. .+..|++||+.+..+....+.+.+ +... . ......+.+||||||||++|||||++
T Consensus 551 ~V~Q~~~-Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 551 YVLQDPF-LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred EEcccch-hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence 9999975 467899999998765444222222 1111 1 11134456799999999999999974
No 130
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.3e-29 Score=177.79 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=90.5
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~q 68 (127)
|+++|+++.|+++++++|+||++++| +++|+||||||||||+++|+|.. ++.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 57899999998888999999999999 99999999999999999999942 22221 2789999
Q ss_pred cccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++..|+.||+.+.... ...+.+.++.... ...+....+||||||||++|||||++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 98766667999998764311 1112222222222 22345556799999999999999974
No 131
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.4e-29 Score=183.16 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=91.4
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eee
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~ 64 (127)
++++++|+++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|. |++.++ .++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4799999999995 56799999999999999999999999999999999995 222221 278
Q ss_pred eeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++. ..++.|+.+|+.+.... ...+.+.++.... ...++.+.+||||||||++|||||+.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999864 34567999999764321 1112222222221 23355566799999999999999974
No 132
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.8e-29 Score=184.04 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=92.0
Q ss_pred CeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------e
Q psy18211 5 PALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------A 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~ 62 (127)
++|+++|+++.|++ +.+|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 47999999999974 45999999999999999999999999999999999953 22221 2
Q ss_pred eeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHH----HHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVK----ELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~----~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++. ..+..|+.+|+.+.... ...+.+. .+... ...++.+.+||||||||++|||||++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~ 157 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAM 157 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 789999874 45567999999865321 1112222 22322 23455556799999999999999974
No 133
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=3.9e-29 Score=176.62 Aligned_cols=119 Identities=17% Similarity=0.077 Sum_probs=89.5
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------------eeeee
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------KASDL 65 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------~~i~~ 65 (127)
++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|.. ++.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 579999999888999999999999999999999999999999999942 2111 13788
Q ss_pred eeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..++..|+.||+.+.... ...+.+.++.... ...++...+||+|||||++|||||++
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99987766668999998764321 1112222222221 23355556799999999999999974
No 134
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.8e-29 Score=181.27 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=91.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~------------- 60 (127)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|. |++.+
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 4589999999999988999999999999999999999999999999999994 21211
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+ +.|+.+|+.+.... ..++.+.+..... ...++...+||||||||++|||
T Consensus 99 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 99 NLRREIGMVFQKPNPF-PKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHhccEEEEecCCccC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 1378999987654 45999998764321 0112222222111 1234555679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 178 al~~ 181 (268)
T PRK14248 178 TLAM 181 (268)
T ss_pred HHhC
Confidence 9974
No 135
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1e-28 Score=179.28 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=90.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceeee--------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKIK-------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~~-------------- 61 (127)
.|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|. |++.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 68999999999988899999999999999999999999999999999994 212111
Q ss_pred --eeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 62 --ASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 62 --~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.++|++|++..+ +.|+.+|+.+.... ..++.+.++.... ...++...+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~-~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccC-cccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 278999987654 47999999864311 1122222222211 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 162 ~~ 163 (250)
T PRK14240 162 AV 163 (250)
T ss_pred hc
Confidence 74
No 136
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.2e-29 Score=184.45 Aligned_cols=122 Identities=13% Similarity=0.025 Sum_probs=90.5
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------- 61 (127)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|. |++.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999964 3699999999999999999999999999999999994 222221
Q ss_pred ----eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 ----ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 ----~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.++|+||++. ..++.|+.||+.+.... ...+.+.++..... ..++.+.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2799999863 34456999999865321 11222333322222 234566679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
.
T Consensus 162 ~ 162 (286)
T PRK13646 162 M 162 (286)
T ss_pred h
Confidence 4
No 137
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.5e-29 Score=182.03 Aligned_cols=127 Identities=12% Similarity=0.022 Sum_probs=93.0
Q ss_pred CCC-CCeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------
Q psy18211 1 MEL-WPALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------- 61 (127)
Q Consensus 1 m~~-~~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------- 61 (127)
||+ .|+|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 1 ~~~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~ 80 (269)
T PRK13648 1 MEDKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEK 80 (269)
T ss_pred CCCCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 444 457999999999975 46999999999999999999999999999999999953 22221
Q ss_pred ---eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ---ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ---~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++. ..+..++.+|+.+.... ...+.+..+.... ...+....+||+|||||++|||||++
T Consensus 81 ~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 81 LRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred HHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2789999874 34556788888664321 1112222222222 23355566799999999999999974
No 138
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.2e-29 Score=179.74 Aligned_cols=122 Identities=13% Similarity=0.063 Sum_probs=92.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceeee-------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKIK------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~~------------- 61 (127)
|+|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|. |++.++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 589999999999988899999999999999999999999999999999995 222221
Q ss_pred ---eeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 62 ---ASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 62 ---~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
.++|++|++..+ +.|+.+|+.+.... ...+.+.++.... ...++...+||+|||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 161 (251)
T PRK14270 83 LRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART 161 (251)
T ss_pred HHhheEEEecCCCcC-CCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 278999987655 48999999764321 1112222222221 12345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 162 l~~ 164 (251)
T PRK14270 162 IAV 164 (251)
T ss_pred Hhc
Confidence 974
No 139
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=179.18 Aligned_cols=122 Identities=9% Similarity=0.062 Sum_probs=92.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--e---------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--I--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~--------------- 60 (127)
.|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|... ++ +
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 6999999999998889999999999999999999999999999999999531 21 1
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+...|+.||+.+.... ..++.+.++..... ..+....+||+|||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 1278999998766667999999764311 11122222221211 22345567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
+.
T Consensus 164 ~~ 165 (252)
T PRK14256 164 AV 165 (252)
T ss_pred hc
Confidence 74
No 140
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.5e-29 Score=184.11 Aligned_cols=122 Identities=14% Similarity=0.055 Sum_probs=90.5
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------- 61 (127)
||+++|+++.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999974 25999999999999999999999999999999999942 22221
Q ss_pred ----eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 ----ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 ----~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.++|++|++. ..++.|+.||+.+.... .....+.++.... .+.++.+.+||||||||++||+||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 2789999863 33456999999865421 1122233322221 2335666679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 161 ~ 161 (288)
T PRK13643 161 M 161 (288)
T ss_pred h
Confidence 4
No 141
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.96 E-value=6.3e-29 Score=180.70 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=91.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------------
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI--------------------- 60 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~--------------------- 60 (127)
|+++|+++.|+++++++|+||+|++||+++|+||||||||||+|+|+|.. ++.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 57899999999888999999999999999999999999999999999942 2111
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHh-------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIK-------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..++..|+.+|+.+... ...++.+.++.... ...++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 137899998877667899999976421 01112222222221 23345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 161 l~~ 163 (252)
T TIGR03005 161 LAM 163 (252)
T ss_pred HHc
Confidence 974
No 142
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.3e-29 Score=182.19 Aligned_cols=123 Identities=11% Similarity=0.001 Sum_probs=91.7
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~------------- 60 (127)
.++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|... + .+
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 458999999999998889999999999999999999999999999999999521 1 11
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+. .|+.||+.+.... ..++.+.++.... ...+....+||+|||||++|||||
T Consensus 91 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral 169 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTI 169 (269)
T ss_pred HHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHH
Confidence 12789999876544 5999999764321 1112222222111 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 170 ~~ 171 (269)
T PRK14259 170 AI 171 (269)
T ss_pred hc
Confidence 74
No 143
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=179.03 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=91.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~-------------- 60 (127)
++|+++|+++.|+++++++++||+|++||+++|+|+||||||||+++|+|... + .+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 57999999999998889999999999999999999999999999999998421 2 11
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+. .++++|+.+.... ..++.+....... ...++...+||||||||++||||
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 13889999876554 7999999764321 1111222222111 12345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 161 l~~ 163 (250)
T PRK14262 161 LAV 163 (250)
T ss_pred HhC
Confidence 974
No 144
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-29 Score=186.41 Aligned_cols=124 Identities=14% Similarity=0.073 Sum_probs=91.4
Q ss_pred CCeeeeceeEEEeCC----------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------
Q psy18211 4 WPALEGREVILVARP----------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------- 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~----------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------- 61 (127)
.++|+++||++.|+. ..+++||||+|++||+++|+|+||||||||+++|+|.. ++.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999962 46999999999999999999999999999999999952 22221
Q ss_pred ----------eeeeeeeccc--CCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchh
Q psy18211 62 ----------ASDLISRATT--SPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKP 118 (127)
Q Consensus 62 ----------~i~~~~q~~~--~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqr 118 (127)
.++|++|++. +.+.+++.+++...... ...+.+.++.... ...++.+.+||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 2899999973 34456888887643211 1112223322222 23456667899999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+|||||+.
T Consensus 163 v~iArAL~~ 171 (327)
T PRK11308 163 IAIARALML 171 (327)
T ss_pred HHHHHHHHc
Confidence 999999974
No 145
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.1e-29 Score=190.88 Aligned_cols=123 Identities=14% Similarity=0.091 Sum_probs=94.5
Q ss_pred CeeeeceeEEEeCCCC------------------------ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----
Q psy18211 5 PALEGREVILVARPEP------------------------NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD---- 56 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~------------------------~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~---- 56 (127)
++|+++|+++.||.+. +++++||+|++||+++|+||||||||||+|+|+|..
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 3799999999998765 799999999999999999999999999999999942
Q ss_pred -ceee------------------eeeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCC
Q psy18211 57 -LCKI------------------KASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKG 108 (127)
Q Consensus 57 -~~~~------------------~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~ 108 (127)
++.+ ..++|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence 2222 1388999998777778999999875421 1112222322222 2345566
Q ss_pred CCCCcccchhhhhHhhhhC
Q psy18211 109 KNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 109 ~~LSgGekqrv~ia~aL~~ 127 (127)
.+|||||||||+|||||+.
T Consensus 163 ~~LSgGq~QRv~LArAL~~ 181 (400)
T PRK10070 163 DELSGGMRQRVGLARALAI 181 (400)
T ss_pred ccCCHHHHHHHHHHHHHhc
Confidence 6799999999999999974
No 146
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.5e-29 Score=182.97 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=92.5
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceeee-------------
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKIK------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~~------------- 61 (127)
++|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999964 56999999999999999999999999999999999942 22221
Q ss_pred -eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 -ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 -~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++. ..++.|+.||+.+.... ...+.+.++.... ...++.+.+||+|||||++||+||++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 2799999874 45577999999764321 1112222222222 23455566799999999999999974
No 147
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.96 E-value=5.5e-29 Score=183.27 Aligned_cols=121 Identities=14% Similarity=0.052 Sum_probs=91.4
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----------ee--ee-----------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----------CK--IK----------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----------~~--~~----------- 61 (127)
||+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|..+ +. ++
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4899999999998899999999999999999999999999999999999532 21 11
Q ss_pred ---eeeeeeecccCCCCcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhh
Q psy18211 62 ---ASDLISRATTSPWPGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 62 ---~i~~~~q~~~~~~~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.++|++|++...++.|+.||+.+... ....+.+.++.... ...++...+|||||||||+|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 16889998766667899999876421 01112222222221 223455667999999999999999
Q ss_pred h
Q psy18211 126 I 126 (127)
Q Consensus 126 ~ 126 (127)
+
T Consensus 161 ~ 161 (272)
T PRK13547 161 A 161 (272)
T ss_pred h
Confidence 7
No 148
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.7e-29 Score=185.89 Aligned_cols=123 Identities=12% Similarity=0.025 Sum_probs=90.8
Q ss_pred CeeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------
Q psy18211 5 PALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------- 61 (127)
++|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.++
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 47999999999974 3699999999999999999999999999999999994 222221
Q ss_pred -----------------eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCc
Q psy18211 62 -----------------ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSK 113 (127)
Q Consensus 62 -----------------~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSg 113 (127)
.++|++|++. ..++.|+.||+.+.... ...+.+.++.... ...++.+.+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 2789999864 34456999999765321 1112222222222 233555667999
Q ss_pred ccchhhhhHhhhhC
Q psy18211 114 TEKKPLQPQYSLIK 127 (127)
Q Consensus 114 Gekqrv~ia~aL~~ 127 (127)
|||||++|||||++
T Consensus 180 GqkqRvaiAraL~~ 193 (320)
T PRK13631 180 GQKRRVAIAGILAI 193 (320)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999974
No 149
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.1e-29 Score=197.87 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=94.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----ee--e---------------ee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CK--I---------------KA 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~--~---------------~~ 62 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +. + ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 68999999999998889999999999999999999999999999999999532 22 1 12
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+|||||||||+|||||++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 78999998776778999999764310 1112233332222 22355556799999999999999974
No 150
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=7.4e-29 Score=181.93 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=89.0
Q ss_pred CeeeeceeEEEeCC---------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------
Q psy18211 5 PALEGREVILVARP---------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------- 61 (127)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 58999999999962 46999999999999999999999999999999999942 22221
Q ss_pred -----eeeeeeeccc--CCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHh
Q psy18211 62 -----ASDLISRATT--SPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 62 -----~i~~~~q~~~--~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~ 123 (127)
.++|++|++. .....++.+++.+.... ...+.+.++.... ...+....+||||||||++||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 3789999864 23345788887653211 1112222322222 2234455679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 163 al~~ 166 (267)
T PRK15112 163 ALIL 166 (267)
T ss_pred HHHh
Confidence 9974
No 151
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.9e-29 Score=182.07 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=89.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------------KASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------------~~i~ 64 (127)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|.. ++.+ ..++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 589999999999888999999999999999999999999999999999942 2211 1278
Q ss_pred eeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. .+..++.+|+.+.... ...+.+..+.... ...++...+||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~ 153 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHc
Confidence 99998653 3445788888764311 1111222222221 23455666799999999999999974
No 152
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=180.65 Aligned_cols=123 Identities=14% Similarity=0.093 Sum_probs=91.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceee---------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKI--------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~--------------- 60 (127)
.++|+++|+++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|.. .+++
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 45799999999999888999999999999999999999999999999999943 1211
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhH
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia 122 (127)
..++|++|++..+. .|+.||+.+.... ...+.+..+..... ..+....+||||||||++||
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 12789999876544 5999999764310 11122222222211 22345566999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||+.
T Consensus 176 ral~~ 180 (267)
T PRK14235 176 RAIAV 180 (267)
T ss_pred HHHHc
Confidence 99974
No 153
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.96 E-value=3.3e-29 Score=199.88 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=94.0
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~ 65 (127)
-++++|+++.|+ ++++++|+||++++||++||+||||||||||+++|++. |++.+++ +++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 389999999999 68999999999999999999999999999999999994 3444432 899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..+ ..|++||+.++.++.+++.+.+..... .+. ...+..||||||||++|||||++
T Consensus 408 V~Qd~~LF-~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 408 VSQDPLLF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred Ecccceee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99997654 589999999986543333333221111 111 22345699999999999999975
No 154
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=8.4e-29 Score=174.06 Aligned_cols=120 Identities=14% Similarity=0.065 Sum_probs=90.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee----------eeeeeecc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA----------SDLISRAT 70 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~----------i~~~~q~~ 70 (127)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|. |++.+++ ++|++|+.
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 478999999998776665 9999999999999999999999999999995 3333322 67888877
Q ss_pred cCCCCcchHHHHHHHHhh-hhHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI-QTVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
...+..|+.+|+.+.... ...+. ++.+... ...++...+||+|||||++|||||++
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred CCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhc
Confidence 666778999999765421 11122 2222222 23355556699999999999999974
No 155
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.96 E-value=3.8e-29 Score=200.10 Aligned_cols=121 Identities=15% Similarity=0.112 Sum_probs=91.2
Q ss_pred eeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----ceeeee--------------eeee
Q psy18211 6 ALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----LCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----~~~~~~--------------i~~~ 66 (127)
-++++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|.. ++.+++ ++|+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEe
Confidence 48999999755 5678999999999999999999999999999999999953 333332 8999
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHHHHhH----h-------h---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKK----I-------L---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~----~-------~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++. .++.|++||+.+..++.+++.+.+.... . . .....+.+||||||||++|||||++
T Consensus 429 ~Q~~~-LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 429 GQNPQ-LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred cCCCc-CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 99975 4677999999987443333333322111 1 0 1123345699999999999999975
No 156
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.8e-29 Score=196.85 Aligned_cols=123 Identities=18% Similarity=0.092 Sum_probs=94.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~ 64 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5899999999999888999999999999999999999999999999999942 22221 378
Q ss_pred eeeecccCCCCcchHHHHHHHHh-------------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK-------------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~-------------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.||+.+... ....+.+.++.... ...++...+|||||||||+||+||+.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 99999877777899999875321 01112223322222 22355556799999999999999974
No 157
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=197.44 Aligned_cols=123 Identities=14% Similarity=-0.006 Sum_probs=94.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|. |++.++ .++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 589999999999988899999999999999999999999999999999994 222221 278
Q ss_pred eeeecccCCCCcchHHHHHHHHh---------h-hhHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK---------I-QTVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~---------~-~~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+...|+.||+.+... . ..++.+.++..... ..++...+|||||||||+||+||+.
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhc
Confidence 99999877677899999976421 0 11122333322222 2345556799999999999999974
No 158
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=178.27 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=91.6
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----------ceee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----------LCKI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----------~~~~-------------- 60 (127)
++|+++|++++|+++.+|+++||+|++|++++|+||||||||||+++|+|.. ++.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4899999999999888999999999999999999999999999999999953 2211
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+ +.|+.||+.+.... ..++.+....... ...++...+||+|||||++||||
T Consensus 83 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 83 LRKRVGMVFQQPNPF-PKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred hhceEEEEecCCccC-cCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 1288999987655 45999999865321 0112222211111 12345566799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 162 l~~ 164 (251)
T PRK14249 162 LAI 164 (251)
T ss_pred Hhc
Confidence 974
No 159
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=178.23 Aligned_cols=123 Identities=12% Similarity=0.035 Sum_probs=91.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----------ceee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----------LCKI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----------~~~~------------- 60 (127)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|.. ++.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 46899999999999888999999999999999999999999999999999942 1111
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh----h---hHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI----Q---TVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~----~---~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+. .|+.+|+.+.... . .++.+....... ...+....+||+|||||++|||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 13789999876554 7999999865321 0 111222111111 1234455679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 162 al~~ 165 (252)
T PRK14255 162 VLAV 165 (252)
T ss_pred HHhc
Confidence 9974
No 160
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=7.7e-29 Score=180.61 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=90.6
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCC-
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWP- 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~- 75 (127)
++|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++..+..
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccccc
Confidence 4899999999999888999999999999999999999999999999999953 23332 38999998755433
Q ss_pred -cchHHHHHHHHh---hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 -GTTLNLLKEIIK---IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 -~t~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++.+++..... ....+.++.+... ...++...+||||||||++||+||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhc
Confidence 367776543211 1112223333332 23345556699999999999999974
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=9.1e-29 Score=181.24 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=89.7
Q ss_pred eeeeceeEEEeC---------CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------
Q psy18211 6 ALEGREVILVAR---------PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~---------~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------- 60 (127)
+|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 689999999995 367999999999999999999999999999999999952 2222
Q ss_pred ------eeeeeeeeccc--CCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhh
Q psy18211 61 ------KASDLISRATT--SPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 61 ------~~i~~~~q~~~--~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~i 121 (127)
..++|++|++. .....|+.||+.+.... ...+.+.++.... ...+....+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 13899999863 33457999998654211 1112223322222 22345556799999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
||||++
T Consensus 162 aral~~ 167 (265)
T TIGR02769 162 ARALAV 167 (265)
T ss_pred HHHHhc
Confidence 999974
No 162
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-28 Score=185.65 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=89.9
Q ss_pred CeeeeceeEEEe----CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-------e--eee----------
Q psy18211 5 PALEGREVILVA----RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-------C--KIK---------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~----~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-------~--~~~---------- 61 (127)
++|+++|+++.| +...+++||||+|++||+++|+|+||||||||+++|+|... + .++
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 579999999999 34579999999999999999999999999999999999632 1 111
Q ss_pred --------eeeeeeecccC--CCCcchHHHHHHHHh------------hhhHHHHHHHHhHhhh------cccCCCCCCc
Q psy18211 62 --------ASDLISRATTS--PWPGTTLNLLKEIIK------------IQTVCKVKELGKKILL------SQVKGKNMSK 113 (127)
Q Consensus 62 --------~i~~~~q~~~~--~~~~t~~~~l~~~~~------------~~~~~~~~~~~~~~~~------~~~~~~~LSg 113 (127)
.++|+||++.. .+..++.+++..... ....+.+.++.....+ .++.+.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 38899998753 344688888764321 0111222333322222 2456677999
Q ss_pred ccchhhhhHhhhhC
Q psy18211 114 TEKKPLQPQYSLIK 127 (127)
Q Consensus 114 Gekqrv~ia~aL~~ 127 (127)
||||||+|||||+.
T Consensus 162 G~~QRv~iArAL~~ 175 (330)
T PRK15093 162 GECQKVMIAIALAN 175 (330)
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999973
No 163
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=6.8e-29 Score=196.84 Aligned_cols=122 Identities=11% Similarity=0.006 Sum_probs=92.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCCcc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWPGT 77 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~~t 77 (127)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+. .++|++|++..+...|
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 489999999999889999999999999999999999999999999999953 33343 3899999887767779
Q ss_pred hHHHHHHHHhh--------------------------------------hhHHHHHHHHhHhh----hcccCCCCCCccc
Q psy18211 78 TLNLLKEIIKI--------------------------------------QTVCKVKELGKKIL----LSQVKGKNMSKTE 115 (127)
Q Consensus 78 ~~~~l~~~~~~--------------------------------------~~~~~~~~~~~~~~----~~~~~~~~LSgGe 115 (127)
+.|++.+.... .....+.++..... ..+....+|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 99988753210 00111222222221 2234456799999
Q ss_pred chhhhhHhhhhC
Q psy18211 116 KKPLQPQYSLIK 127 (127)
Q Consensus 116 kqrv~ia~aL~~ 127 (127)
||||+||+||+.
T Consensus 161 ~qrv~lA~aL~~ 172 (530)
T PRK15064 161 KLRVLLAQALFS 172 (530)
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 164
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.3e-29 Score=187.79 Aligned_cols=118 Identities=18% Similarity=0.090 Sum_probs=89.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------------ee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------KA 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------~~ 62 (127)
||++ |++++|+++. + |+||+|++||+++|+||||||||||+++|+|.. ++.+ ..
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4788 9999998764 3 999999999999999999999999999999952 2211 13
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhhhhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKIQTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|+...++.+|+.||+.+....... +.++.+... ...++.+.+|||||||||+|||||++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 78999998777778999999875432222 233333332 23455566799999999999999974
No 165
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=178.08 Aligned_cols=124 Identities=18% Similarity=0.139 Sum_probs=92.4
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eee------------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKI------------ 60 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~------------ 60 (127)
|+ ++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|... +++
T Consensus 1 ~~--~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 1 ME--NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred CC--ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 55 47999999999998899999999999999999999999999999999999532 211
Q ss_pred ------eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhh
Q psy18211 61 ------KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 ------~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++..+ +.|+.||+.+.... .....+..+.... ...+....+||||||||++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~ 157 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRIC 157 (251)
T ss_pred hHHHhhccEEEEecCCccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHH
Confidence 1278999987554 57999999764321 1112222222211 1224455669999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||++
T Consensus 158 laral~~ 164 (251)
T PRK14251 158 IARALAV 164 (251)
T ss_pred HHHHHhc
Confidence 9999974
No 166
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=181.89 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=89.3
Q ss_pred eeeeceeEEEeCC-----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee---------------
Q psy18211 6 ALEGREVILVARP-----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~-----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------- 60 (127)
.|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999974 4699999999999999999999999999999999994 22221
Q ss_pred ---eeeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 ---KASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 ---~~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..++|++|++. ..++.|+.+|+.+.... .....++++.... ...++...+||||||||++|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 12789999863 33456999999764321 1111222222221 2235556679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
.
T Consensus 162 ~ 162 (280)
T PRK13649 162 M 162 (280)
T ss_pred c
Confidence 4
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=181.76 Aligned_cols=122 Identities=20% Similarity=0.111 Sum_probs=90.9
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee----------------ee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK----------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~----------------~i 63 (127)
+|+++|+++.|+ .+.+++++||+|++||+++|+||||||||||+++|+|. |++.++ .+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 46799999999999999999999999999999999994 222221 27
Q ss_pred eeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++. ..++.|+.||+.+.... ...+.+.++.... .+.++...+||||||||++|||||+.
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~ 154 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAM 154 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 89999864 34567999999764321 1112222222222 23456666799999999999999974
No 168
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=5.7e-29 Score=202.20 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=91.2
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eee
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~ 64 (127)
.++++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+|+|+|. |++.++ .++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 489999999995 46799999999999999999999999999999999995 333333 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHH----HhHhh-------h---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKEL----GKKIL-------L---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~----~~~~~-------~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+..+ ..++.+.+. ..... + ....+.+||||||||++|||||++
T Consensus 531 ~v~Q~~~l-f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~ 605 (686)
T TIGR03797 531 VVLQNGRL-MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVR 605 (686)
T ss_pred EEccCCcc-CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999765 67799999987643 222222222 11110 1 112345699999999999999975
No 169
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2e-28 Score=181.26 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=91.8
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~------------- 60 (127)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|... + .+
T Consensus 37 ~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 37 ETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred CceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 457999999999988889999999999999999999999999999999999531 2 11
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+ +.++.||+.+.... ...+.+.++.... ...++...+||||||||++|||||
T Consensus 117 ~~~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 117 ALRRRIGMVFQKPNPF-PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred hhhccEEEEecCCccC-cCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1278999987544 45999999764321 1122223222221 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 196 ~~ 197 (285)
T PRK14254 196 AP 197 (285)
T ss_pred Hc
Confidence 74
No 170
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=1.7e-28 Score=178.44 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=88.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee-------------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI------------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~------------------- 60 (127)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|. |++.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 589999999999888899999999999999999999999999999999994 22221
Q ss_pred ----eeeeeeeecccC--CCCcchHHHHHHHHh------h-hhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHh
Q psy18211 61 ----KASDLISRATTS--PWPGTTLNLLKEIIK------I-QTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ----~~i~~~~q~~~~--~~~~t~~~~l~~~~~------~-~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++.. ....++.+++..... . ... +.++.+.......++...+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 126888888642 233467777753210 0 111 22223322212334556679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 162 al~~ 165 (253)
T TIGR02323 162 NLVT 165 (253)
T ss_pred HHhc
Confidence 9974
No 171
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-28 Score=177.83 Aligned_cols=122 Identities=11% Similarity=0.052 Sum_probs=91.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~-------------- 60 (127)
++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|..+ + .+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 47999999999998899999999999999999999999999999999999432 2 11
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+ +.|+.+|+.+.... ...+.+.+..... ...+....+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcC-cccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 1278999987655 47999999764321 0111222221111 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
+.
T Consensus 161 ~~ 162 (249)
T PRK14253 161 AM 162 (249)
T ss_pred Hc
Confidence 74
No 172
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.1e-30 Score=178.51 Aligned_cols=122 Identities=14% Similarity=0.050 Sum_probs=97.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~~ 66 (127)
|++++|++|+|+++.+++|+|++|++|.+++|||||||||||||.++++. |++.+++ +.++
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999994 4445543 5667
Q ss_pred eecccCCCCcchHHHHHHHH-h-------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEII-K-------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~-~-------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.......||+|.+.++. + ..++..+.+..... .+.++...+||||||||+.||+.|++
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQ 152 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQ 152 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeec
Confidence 77777777889999988754 1 12333444433333 45678888999999999999998864
No 173
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=5.9e-29 Score=185.38 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=85.9
Q ss_pred EEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeeeecccCCCC
Q psy18211 14 LVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLISRATTSPWP 75 (127)
Q Consensus 14 ~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~q~~~~~~~ 75 (127)
++|+++++|+|+||+|++||++||+||||||||||+|+|+|.. ++.++ .++|++|++..++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 4688888999999999999999999999999999999999952 23321 28999999877777
Q ss_pred cchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|+.||+.+.... ...+.+.++.... ...++...+||||||||++||+||++
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 141 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIH 141 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhc
Confidence 8999999864321 1112223322222 23355556799999999999999974
No 174
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.96 E-value=1.3e-28 Score=179.54 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=92.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDLIS 67 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~~~ 67 (127)
|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|. |++.++ .++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6889999999988999999999999999999999999999999999994 222221 278999
Q ss_pred ecccCCCCcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++..|+.+|+.+... ....+.+.++.... ...++...+||+|||||++||+||+.
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 98866677899999876321 01112223222222 23455666799999999999999873
No 175
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.96 E-value=9.5e-29 Score=176.83 Aligned_cols=120 Identities=16% Similarity=0.026 Sum_probs=91.5
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------eeeeeeeeccc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI----------KASDLISRATT 71 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~----------~~i~~~~q~~~ 71 (127)
|+++|+++.|+++++|+++||++++||+++|+||||||||||+++|+|.. ++.+ ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 57899999999888999999999999999999999999999999999953 2222 13789999877
Q ss_pred CCCCcchHHHHHHHHh--hhhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 72 SPWPGTTLNLLKEIIK--IQTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 72 ~~~~~t~~~~l~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++..|+.+|+.+... .... +.++.+... ...+....+||+|||||++|||||+.
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhc
Confidence 6666799999876432 1112 222223222 22345555699999999999999974
No 176
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.96 E-value=5.2e-29 Score=203.03 Aligned_cols=121 Identities=19% Similarity=0.161 Sum_probs=91.4
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.+++ ++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 4899999999974 6799999999999999999999999999999999995 3344432 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHH----HHhHh-------h---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKE----LGKKI-------L---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~----~~~~~-------~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+..+...++.+.+ ..... . .....+.+||||||||++|||||++
T Consensus 557 ~v~Q~~~l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~ 632 (710)
T TIGR03796 557 MVDQDIFL-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR 632 (710)
T ss_pred EEecCChh-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence 99999754 57799999987543222222222 11111 0 1123346699999999999999974
No 177
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=178.56 Aligned_cols=123 Identities=12% Similarity=0.088 Sum_probs=92.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------e--ee-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------C--KI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~--~~------------- 60 (127)
+++|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+|+|+|... + .+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred cceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 468999999999998889999999999999999999999999999999999422 2 11
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+ +.|+.||+.+.... ...+.+.+..... ...++...+||+|||||++|||
T Consensus 85 ~~~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 85 RLRRQIGMVFQRPNPF-PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred hhhhheEEEecccccC-CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 1278999987655 48999999764321 1112222222211 1334556679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 164 al~~ 167 (259)
T PRK14260 164 ALAI 167 (259)
T ss_pred HHhc
Confidence 9974
No 178
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.6e-28 Score=181.31 Aligned_cols=123 Identities=11% Similarity=0.032 Sum_probs=91.1
Q ss_pred CeeeeceeEEEeCC------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee------------
Q psy18211 5 PALEGREVILVARP------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------ 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------ 61 (127)
++|+++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|. |++.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 48999999999963 5699999999999999999999999999999999994 222221
Q ss_pred ---eeeeeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ---ASDLISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ---~i~~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++.. .+..++.+++.+.... ..++.++.+.... ...++...+||||||||++|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 27899998643 3455889998765321 1122233322221 33455666799999999999999974
No 179
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.1e-28 Score=178.66 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=92.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceee----------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKI---------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~---------------- 60 (127)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. .+++
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 4799999999999889999999999999999999999999999999999953 2221
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+ +.|+.+|+.+.... ..++.+.++.... ...++...+||+|||||++||||
T Consensus 99 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lara 177 (267)
T PRK14237 99 MRKHIGMVFQRPNPF-AKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARA 177 (267)
T ss_pred HhcceEEEecCCccc-cccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 1278999987554 46999999875321 1112222222221 12345566799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 178 l~~ 180 (267)
T PRK14237 178 IAV 180 (267)
T ss_pred Hhc
Confidence 974
No 180
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=4.9e-29 Score=170.84 Aligned_cols=126 Identities=16% Similarity=0.084 Sum_probs=96.7
Q ss_pred CCCCCeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee---------------
Q psy18211 1 MELWPALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK--------------- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~--------------- 61 (127)
|....+|+++++++..+. ..+|++|++.|++||.++|+||+|||||||+-+++|...+..+
T Consensus 1 m~~~~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd 80 (228)
T COG4181 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80 (228)
T ss_pred CCccceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHH
Confidence 444347999999998864 5799999999999999999999999999999999996433221
Q ss_pred --------eeeeeeecccCCCCcchHHHHHHHHhhh------hHHHHHHHHhHhhh---cccCCCCCCcccchhhhhHhh
Q psy18211 62 --------ASDLISRATTSPWPGTTLNLLKEIIKIQ------TVCKVKELGKKILL---SQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 62 --------~i~~~~q~~~~~~~~t~~~~l~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~LSgGekqrv~ia~a 124 (127)
.+||+||.....+.+|..||+..+..-. ......++.....+ ..-++.+|||||+|||+||||
T Consensus 81 ~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 81 ARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred HHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHH
Confidence 2899999998888999999999876321 12223333333322 233455799999999999999
Q ss_pred hh
Q psy18211 125 LI 126 (127)
Q Consensus 125 L~ 126 (127)
+.
T Consensus 161 fa 162 (228)
T COG4181 161 FA 162 (228)
T ss_pred hc
Confidence 85
No 181
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=1.6e-28 Score=173.54 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=89.0
Q ss_pred eeeceeEEEeCCC-----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee-eeeeeecccCCCC
Q psy18211 7 LEGREVILVARPE-----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA-SDLISRATTSPWP 75 (127)
Q Consensus 7 l~~~~l~~~~~~~-----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~-i~~~~q~~~~~~~ 75 (127)
++++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|. |++.+++ ++|++|++... +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~-~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQ-N 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhc-c
Confidence 5789999999764 799999999999999999999999999999999995 3444444 89999998654 6
Q ss_pred cchHHHHHHHHhhh---hHHHHHHHHhH--hh--------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKIQ---TVCKVKELGKK--IL--------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~~---~~~~~~~~~~~--~~--------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.||+.+..... ..+..+.+... .. ..+....+||+|||||++|||||++
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~ 144 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 79999998643211 11111111111 10 1223345699999999999999974
No 182
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-28 Score=174.23 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=88.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~ 69 (127)
|+++|++++|+++. .|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 47899999998754 3999999999999999999999999999999943 22222 27899999
Q ss_pred ccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..++..|+.||+.+... ...++.+.++.... ...++.+.+||+|||||++|||||+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 876666799999875431 01122233322222 22345556699999999999999974
No 183
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.96 E-value=9.1e-29 Score=201.80 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=91.8
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------ee
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i 63 (127)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|. |++.++ .+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 5899999999974 5799999999999999999999999999999999994 334443 28
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++.. ++.|++||+.++.....++.+.+..... .+ ....+.+||||||||++|||||++
T Consensus 558 ~~v~Q~~~l-F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 558 ALVGQEPVL-FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred eEEecCccc-cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 999999754 5789999999865332222222221111 01 122345799999999999999975
No 184
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.2e-28 Score=181.23 Aligned_cols=123 Identities=15% Similarity=0.033 Sum_probs=90.2
Q ss_pred CeeeeceeEEEeCCC-----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee--------------
Q psy18211 5 PALEGREVILVARPE-----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~-----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~-------------- 60 (127)
..|+++|++++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|. |++.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 368999999999764 499999999999999999999999999999999994 22211
Q ss_pred -----eeeeeeeecccC-CCCcchHHHHHHHHhh------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhh
Q psy18211 61 -----KASDLISRATTS-PWPGTTLNLLKEIIKI------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 -----~~i~~~~q~~~~-~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++.. .++.|+.+|+.+.... ...+.+.++.... ...++...+||||||||++||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 137899998642 3456999999764321 1112222222222 23355566799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|+.
T Consensus 165 l~~ 167 (289)
T PRK13645 165 IAM 167 (289)
T ss_pred HHh
Confidence 973
No 185
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.96 E-value=2.7e-28 Score=179.11 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=90.2
Q ss_pred CeeeeceeEEEeC---------CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------
Q psy18211 5 PALEGREVILVAR---------PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~---------~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------- 60 (127)
++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 5799999999997 478999999999999999999999999999999999942 2221
Q ss_pred -------eeeeeeeeccc--CCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhh
Q psy18211 61 -------KASDLISRATT--SPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 61 -------~~i~~~~q~~~--~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ 120 (127)
..++|++|++. +....++.+++.+.... .....+.++.... ...+....+||+|||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 13889999863 33456888887543210 1111223322222 2334566679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||++
T Consensus 162 laral~~ 168 (268)
T PRK10419 162 LARALAV 168 (268)
T ss_pred HHHHHhc
Confidence 9999974
No 186
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.9e-28 Score=175.36 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=91.9
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~ 69 (127)
|+++|++++|+++++++++||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 47899999999889999999999999999999999999999999999953 22221 37999999
Q ss_pred ccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..+...++.+|+.+... ......+..+.... ...++...+||+|||||++|||||++
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVN 147 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 877667799999876432 11122222222211 23345556799999999999999974
No 187
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=194.38 Aligned_cols=123 Identities=14% Similarity=-0.027 Sum_probs=94.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------eeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------KASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~~i~ 64 (127)
|+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+ ..++
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 5899999999999888999999999999999999999999999999999942 2222 1378
Q ss_pred eeeecccCCCCcchHHHHHHHHh---------hhhHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK---------IQTVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~---------~~~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.+|+.+... ....+.+.++..... ..++...+||||||||++|||||+.
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALAR 157 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHh
Confidence 99998876667899999986421 011122333322222 2345556799999999999999973
No 188
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.2e-28 Score=177.40 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=92.2
Q ss_pred CCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce--------e--e------------
Q psy18211 3 LWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC--------K--I------------ 60 (127)
Q Consensus 3 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~--------~--~------------ 60 (127)
+.++|+++|++++|++..+|+|+||++++||+++|+|+||||||||+++|+|...+ . +
T Consensus 4 ~~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 4 LIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ccceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 45689999999999888899999999999999999999999999999999995321 1 1
Q ss_pred ----eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhH
Q psy18211 61 ----KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 61 ----~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia 122 (127)
..++|++|++..+ +.|+.||+.+.... .....+.+...... ..++...+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLF-PMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred HHhhccEEEEecCCccC-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 1278888886644 48999998764311 11122222222221 23455567999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||++
T Consensus 163 ral~~ 167 (261)
T PRK14258 163 RALAV 167 (261)
T ss_pred HHHhc
Confidence 99974
No 189
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.4e-28 Score=183.06 Aligned_cols=123 Identities=13% Similarity=-0.033 Sum_probs=89.7
Q ss_pred CeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-------e--eee----------
Q psy18211 5 PALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-------C--KIK---------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-------~--~~~---------- 61 (127)
++|+++|+++.|+. ..+|+||||+|++||+++|+|+||||||||+++|+|... + .++
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred ceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999976 469999999999999999999999999999999999532 1 111
Q ss_pred --------eeeeeeeccc--CCCCcchHHHHHHHHh-------hhhHHHHHHHHhHhh------hcccCCCCCCcccchh
Q psy18211 62 --------ASDLISRATT--SPWPGTTLNLLKEIIK-------IQTVCKVKELGKKIL------LSQVKGKNMSKTEKKP 118 (127)
Q Consensus 62 --------~i~~~~q~~~--~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~LSgGekqr 118 (127)
.++|+||++. ..+.+++.+++..... ....+.+.++..... ..++.+.+||||||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 2799999874 3445677776654321 111222333332222 2345667799999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+|||||+.
T Consensus 162 v~iArAL~~ 170 (326)
T PRK11022 162 VMIAMAIAC 170 (326)
T ss_pred HHHHHHHHh
Confidence 999999973
No 190
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-28 Score=178.90 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=91.2
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~------------- 60 (127)
.++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|.. .+. +
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 35899999999999888999999999999999999999999999999999852 121 1
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+ +.++.+|+.+.... ..++.+....... ...+....+|||||||||+|||||
T Consensus 98 ~~~~~i~~v~q~~~l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 176 (274)
T PRK14265 98 KLRRQVGMVFQRPNPF-PKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAI 176 (274)
T ss_pred HHhhcEEEEccCCccc-cccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 1378999987654 45999999764311 1111222211111 123455567999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 177 ~~ 178 (274)
T PRK14265 177 AM 178 (274)
T ss_pred hh
Confidence 74
No 191
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=1.6e-28 Score=169.02 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=83.3
Q ss_pred eeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCCcc
Q psy18211 7 LEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWPGT 77 (127)
Q Consensus 7 l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~~t 77 (127)
|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+. .++|++|++.. ++.|
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~-~~~t 79 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL-PLGT 79 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-cccc
Confidence 47899999996 467999999999999999999999999999999999953 33333 48999998754 4679
Q ss_pred hHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.||+.+. ...+||+|||||++|||||++
T Consensus 80 v~~nl~~~---------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 80 LREQLIYP---------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred HHHHhhcc---------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 99998652 235699999999999999974
No 192
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-28 Score=181.24 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=89.9
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------------eeee
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------KASD 64 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------~~i~ 64 (127)
.++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 4668888888888999999999999999999999999999999999942 2211 1378
Q ss_pred eeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+.+||||||||++|||||++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~ 177 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAV 177 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 999988776678999999765311 1112222222222 23355556699999999999999974
No 193
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.8e-28 Score=179.06 Aligned_cols=125 Identities=13% Similarity=0.062 Sum_probs=92.9
Q ss_pred CCCCCeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-----------
Q psy18211 1 MELWPALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK----------- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~----------- 61 (127)
|+. +|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|. |++.++
T Consensus 1 m~~--~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 1 MNK--ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWN 78 (277)
T ss_pred CCc--eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHH
Confidence 554 7999999999974 3599999999999999999999999999999999994 333221
Q ss_pred ---eeeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ---ASDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ---~i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++. ..+..|+.+|+.+.... ...+.++.+.... ...++...+||||||||++|||||++
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~ 157 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIAL 157 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 2799999974 45567999999764321 1111222222221 23455566799999999999999974
No 194
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.3e-28 Score=178.25 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=90.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ce--ee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LC--KI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~--~~-------------- 60 (127)
++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. .+ .+
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5799999999999888999999999999999999999999999999999842 12 11
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-----hhHHHHHH----HHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKVKE----LGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~~~----~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..++|++|++..+. .|+.+|+.+.... ...+.+.+ +.... ...+....+||||||||++|||||+
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 12789999875544 5999998764321 11112222 11110 1234455569999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 168 ~ 168 (264)
T PRK14243 168 V 168 (264)
T ss_pred c
Confidence 4
No 195
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.95 E-value=1.6e-28 Score=194.51 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+|+|+|.. ++.++ .++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 5899999999976 46999999999999999999999999999999999943 33332 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHH----HHhHhh----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKE----LGKKIL----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~----~~~~~~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+..+...++.+.+ ...... .....+.+||||||||++|||||++
T Consensus 400 ~v~Q~~~l-f~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 400 WVPQHPFL-FAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred EEcCCCcc-cCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999754 56799999987543222222222 111110 1122345699999999999999975
No 196
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=1.5e-28 Score=187.19 Aligned_cols=114 Identities=16% Similarity=0.030 Sum_probs=87.4
Q ss_pred EEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee------------------eeeeeeeecc
Q psy18211 14 LVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI------------------KASDLISRAT 70 (127)
Q Consensus 14 ~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~------------------~~i~~~~q~~ 70 (127)
|.|+++.+++|+||+|++||+++|+||||||||||+++|+|..+ +.+ ..++|++|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888899999999999999999999999999999999999532 221 2489999998
Q ss_pred cCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++.+|+.||+.+.... ...+.+.++.... .+.++.+.+|||||||||+|||||+.
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~ 146 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAA 146 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 887778999999875421 1122233322222 23456666799999999999999974
No 197
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=1.3e-28 Score=196.81 Aligned_cols=121 Identities=18% Similarity=0.189 Sum_probs=90.8
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~--------------i~ 64 (127)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+++ ++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 4999999999965 67999999999999999999999999999999999953 333332 79
Q ss_pred eeeecccCCCCcchHHHHHHHHhh-hhHHHHHHHHhHh-----------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI-QTVCKVKELGKKI-----------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~-----------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++. .++.|++||+.+.... ..++.+.+..... .+ ....+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH-LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce-eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999975 4578999999875321 1222222221111 01 122345699999999999999975
No 198
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=1.5e-28 Score=200.33 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=91.7
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~ 65 (127)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|. |++.+++ ++|
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 489999999997 47899999999999999999999999999999999995 3344432 899
Q ss_pred eeecccCCCCcchHHHHHHHH-hhhhHHHHHHH----HhHh-------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEII-KIQTVCKVKEL----GKKI-------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~----~~~~-------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|++||+.+.. +...++.+.+. .... .+ ....+.+||||||||++|||||++
T Consensus 553 v~Q~~~l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 553 LPQEPYI-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred EecCcee-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 9999754 5779999999862 22222222221 1111 11 123446699999999999999975
No 199
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.3e-28 Score=179.07 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=91.3
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~------------- 60 (127)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|.. .+. +
T Consensus 37 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 37 KPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred ceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 35799999999998888999999999999999999999999999999999941 111 1
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+ +.|+.||+.+.... ...+.+.++.... ...++...+||||||||++|||
T Consensus 117 ~~~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 117 LLRKKIGMVFQKPNPF-PKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HhhhcEEEECCCCCCC-ccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 1378999987654 35999999865321 1112222222111 1234555669999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||+.
T Consensus 196 aL~~ 199 (286)
T PRK14275 196 TLAV 199 (286)
T ss_pred HHhc
Confidence 9974
No 200
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=1.5e-28 Score=196.48 Aligned_cols=121 Identities=20% Similarity=0.243 Sum_probs=91.8
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|. |++.+++ ++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 5899999999964 5699999999999999999999999999999999994 3333332 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh----hhcc---------cCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI----LLSQ---------VKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~----~~~~---------~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+..+...++.+.+..... .... ..+.+||||||||++|||||++
T Consensus 418 ~v~Q~~~l-f~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 418 VVSQRVHL-FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred EEcccchh-hcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999754 5679999998865433333333222211 1111 2345699999999999999975
No 201
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5.5e-28 Score=176.57 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=93.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----ee------------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KI------------------ 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~------------------ 60 (127)
-|+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|...+ .+
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 3689999999999999999999999999999999999999999999999994211 11
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-----h--hHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-----Q--TVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~--~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..++..|+.+|+.+.... . ..+.+..+..... ..+.....||+|||||++||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 1278999988766667999999865321 0 1112222222211 2234556699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 168 l~~ 170 (257)
T PRK14246 168 LAL 170 (257)
T ss_pred HHc
Confidence 974
No 202
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.95 E-value=1.5e-28 Score=175.22 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=87.7
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
-|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+++|+|.. ++.++ .++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3789999999975 57999999999999999999999999999999999952 22221 378
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhh----HHHHHHHHhHhhhccc----------CCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQT----VCKVKELGKKILLSQV----------KGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~----------~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+ +.|+.||+.+...... .+.++.+.....+... ...+||||||||++|||||+.
T Consensus 82 ~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 82 YVPQDVTLF-YGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred EeCCCCccc-cchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 999987654 4699999875422111 1222222222111111 234699999999999999974
No 203
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.6e-28 Score=178.60 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=91.3
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--e-------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--I------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~------------- 60 (127)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|... +. +
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 357999999999998899999999999999999999999999999999999532 11 1
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh---hh----HHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI---QT----VCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~---~~----~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+ +.|+.+|+.+.... .. .+.+.++..... ..++...+||||||||++||||
T Consensus 99 ~~~~i~~v~q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 99 FRRRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HhhheEEeccCCccC-CccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 1278999987654 47999999764311 01 111122111111 1234455699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 178 l~~ 180 (276)
T PRK14271 178 LAV 180 (276)
T ss_pred Hhc
Confidence 974
No 204
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3e-28 Score=172.30 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=87.2
Q ss_pred eeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc------e--ee-------------
Q psy18211 6 ALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL------C--KI------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~------~--~~------------- 60 (127)
.+.++|++|.|+ ++++|+++||+|++||+++|+||||||||||+++|+|... + .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 578999999995 5679999999999999999999999999999999999533 1 11
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|+...++..|+.||+.+..... .+.....||+|||||++|||||++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK--------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc--------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 12789999876666679999987643110 334445699999999999999974
No 205
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.2e-28 Score=174.49 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=88.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------~i~~~~q 68 (127)
||+++|++++|+++. .++||+|++||+++|+||||||||||+++|+|. |++.++ .++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999998654 499999999999999999999999999999994 222221 3789999
Q ss_pred cccCCCCcchHHHHHHHHh------hhhHHHHH----HHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIK------IQTVCKVK----ELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~------~~~~~~~~----~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..+...|+.||+.+... ...++.+. .+... ...++...+||||||||++|||||++
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 8876666799999975421 01122222 23322 23455566799999999999999874
No 206
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=5e-28 Score=195.07 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=92.5
Q ss_pred CCeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee--------------
Q psy18211 4 WPALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-------------- 60 (127)
+++|+++|+++.|+. .++|+|+||+|++||+++|+|+||||||||+|+|+|.. .+.+
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 568999999999963 47999999999999999999999999999999999942 2211
Q ss_pred --------------eeeeeeeecc--cCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhhh------cccCCCCC
Q psy18211 61 --------------KASDLISRAT--TSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKILL------SQVKGKNM 111 (127)
Q Consensus 61 --------------~~i~~~~q~~--~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~L 111 (127)
..++|++|++ ...+..|+.+|+.+.... ...+.+.++.....+ .++.+.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 1378999986 344457999999865321 112233333322222 35566679
Q ss_pred CcccchhhhhHhhhhC
Q psy18211 112 SKTEKKPLQPQYSLIK 127 (127)
Q Consensus 112 SgGekqrv~ia~aL~~ 127 (127)
||||||||+||+||+.
T Consensus 170 SgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 170 SGGMRQRVMIAMALSC 185 (623)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999974
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=5.8e-28 Score=175.46 Aligned_cols=127 Identities=16% Similarity=0.038 Sum_probs=90.2
Q ss_pred CCC-CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-------Cceeee-----------
Q psy18211 1 MEL-WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-------DLCKIK----------- 61 (127)
Q Consensus 1 m~~-~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-------~~~~~~----------- 61 (127)
|+. .++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|. |++.++
T Consensus 1 ~~~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 1 MNKNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred CCCCCceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 543 4579999999999888899999999999999999999999999999999994 222221
Q ss_pred ----eeeeeeecccCCCCcchHHHHHHHHhh----------h---hHHHHHHHHhHh----hhcccCCC-CCCcccchhh
Q psy18211 62 ----ASDLISRATTSPWPGTTLNLLKEIIKI----------Q---TVCKVKELGKKI----LLSQVKGK-NMSKTEKKPL 119 (127)
Q Consensus 62 ----~i~~~~q~~~~~~~~t~~~~l~~~~~~----------~---~~~~~~~~~~~~----~~~~~~~~-~LSgGekqrv 119 (127)
+++|++|++..+...++.+++.+.... . ....+.++.... ...+.... +||||||||+
T Consensus 81 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHH
Confidence 256788887655556788887653210 0 011122222221 12233333 4999999999
Q ss_pred hhHhhhhC
Q psy18211 120 QPQYSLIK 127 (127)
Q Consensus 120 ~ia~aL~~ 127 (127)
+||+||++
T Consensus 161 ~la~al~~ 168 (252)
T CHL00131 161 EILQMALL 168 (252)
T ss_pred HHHHHHHc
Confidence 99999974
No 208
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=4.6e-28 Score=174.91 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=91.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee------------eeeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI------------KASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~------------~~i~~~~q~ 69 (127)
++++|+++.|+++++|+++||++.+||+++|+||||||||||+++|+|. |++.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 4789999999988999999999999999999999999999999999994 22222 137899998
Q ss_pred ccCCCCcchHHHHHHHHhh------hhHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI------QTVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..+...|+.||+.+.... ...+. ++.+... ...++...+||+||+||++|||||++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAV 147 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 8766667999999764321 11122 2222222 23345555699999999999999974
No 209
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=2.8e-28 Score=194.36 Aligned_cols=123 Identities=20% Similarity=0.130 Sum_probs=93.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecc-cCCCC
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRAT-TSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~-~~~~~ 75 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|+. ..+..
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 402 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 402 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCC
Confidence 4799999999999889999999999999999999999999999999999953 33333 389999986 45556
Q ss_pred cchHHHHHHHHhh--------hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI--------QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.+++.+.... .....++.+.......++.+.+||||||||++||+||+.
T Consensus 403 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 462 (556)
T PRK11819 403 KTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQ 462 (556)
T ss_pred CCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 7999998764311 011223333322122345556799999999999999974
No 210
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=3.6e-28 Score=194.69 Aligned_cols=120 Identities=21% Similarity=0.152 Sum_probs=91.1
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee--------------eee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA--------------SDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~--------------i~~ 65 (127)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|.. .+.+++ ++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 4899999999964 67999999999999999999999999999999999953 333332 899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHH----HhHh-------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKEL----GKKI-------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~----~~~~-------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++.. ++.|++||+.+.. ...++.+.+. +... .+ ....+.+||||||||++|||||++
T Consensus 420 v~Q~~~l-F~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 420 VQQDPVV-LADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred EccCCcc-ccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999864 5679999999864 2222222222 1111 01 122345699999999999999974
No 211
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-28 Score=192.50 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=92.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeeccc--CCC
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATT--SPW 74 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~--~~~ 74 (127)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+. .++|++|++. .+.
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCC
Confidence 3799999999999888999999999999999999999999999999999953 23332 3899999864 333
Q ss_pred CcchHHHHHHHHh-hh----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 75 PGTTLNLLKEIIK-IQ----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 75 ~~t~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++.+++..... .. ..+.++.+.......++...+||||||||++||+||++
T Consensus 398 ~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 398 DLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred CCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 5689998864321 11 12233333332123455666799999999999999974
No 212
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=3.2e-28 Score=193.85 Aligned_cols=123 Identities=19% Similarity=0.128 Sum_probs=93.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeeccc-CCCC
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATT-SPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~-~~~~ 75 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++. .++.
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~ 400 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPN 400 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCC
Confidence 4799999999999889999999999999999999999999999999999953 33333 3899999863 5556
Q ss_pred cchHHHHHHHHhh----h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI----Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.+++.+.... . ....++.+.......++...+|||||||||+||+||+.
T Consensus 401 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~ 460 (552)
T TIGR03719 401 KTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460 (552)
T ss_pred CcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhh
Confidence 7999999865310 0 11222333322112345556799999999999999974
No 213
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=2.3e-28 Score=198.83 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=91.4
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~ 64 (127)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.++ .++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 4899999999964 5799999999999999999999999999999999995 334443 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHH----HHhHhh-------h---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKE----LGKKIL-------L---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~----~~~~~~-------~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+..+...++.+.+ ...... + ....+.+||||||||++|||||++
T Consensus 543 ~v~Q~~~l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~ 618 (694)
T TIGR03375 543 YVPQDPRL-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR 618 (694)
T ss_pred EECCChhh-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999754 56799999987643222222222 111110 1 123345699999999999999974
No 214
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1e-27 Score=174.13 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=90.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ce--ee---------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LC--KI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~--~~--------------- 60 (127)
+|+++|+++.|+++++++|+||+|++||+++|+|+||||||||+++|+|.. .+ .+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 689999999999888999999999999999999999999999999999841 12 11
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHhhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..++|++|++..+. .++.+|+.+.... ..++.+.+..... ...++...+||+|||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 12899999876544 5999999764311 1112222222211 123455667999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 162 ~~ 163 (250)
T PRK14266 162 AV 163 (250)
T ss_pred Hc
Confidence 74
No 215
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.95 E-value=3.6e-28 Score=194.58 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=90.9
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|.. .+.++ .++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 4899999999975 67999999999999999999999999999999999953 33332 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHH----HHHHhHh-------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKV----KELGKKI-------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~~-------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++. .++.|++||+.+..+...++.+ +...... .+ ....+.+||||||||++|||||++
T Consensus 414 v~Q~~~-lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 414 VFQDAG-LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred EecCcc-cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999975 4577999999886432222222 2211111 01 122345699999999999999975
No 216
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=2.9e-28 Score=192.02 Aligned_cols=122 Identities=16% Similarity=0.054 Sum_probs=92.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----ee--e---------------eee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CK--I---------------KAS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~--~---------------~~i 63 (127)
+|+++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|... +. + ..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 4789999999998889999999999999999999999999999999999532 22 2 127
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh----------hhHHHHHHHHhHhhh----cccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI----------QTVCKVKELGKKILL----SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~----------~~~~~~~~~~~~~~~----~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..+...|+.||+.+.... .....+.++.....+ .++...+|||||||||+||+||++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 8999998766778999998764210 111222333222222 234455699999999999999974
No 217
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=176.18 Aligned_cols=123 Identities=13% Similarity=0.081 Sum_probs=91.3
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eee---------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKI--------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~--------------- 60 (127)
.++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|... +.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 347999999999988889999999999999999999999999999999999622 211
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|++|++..+. .|+.||+.+.... ...+.+.+..... ...+....+||+|||||++|||
T Consensus 103 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 13789999876554 5999999764311 0112222222211 1234455669999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 182 al~~ 185 (272)
T PRK14236 182 AIAI 185 (272)
T ss_pred HHHC
Confidence 9974
No 218
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=9e-28 Score=173.21 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=90.1
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee------------eeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------ASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------~i~~~~q~ 69 (127)
|+++|++++|+++ +++++||+|++||+++|+|+||||||||+++|+|. |++.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 5789999999865 89999999999999999999999999999999995 222222 37999999
Q ss_pred ccCCCCcchHHHHHHHHhh------hhHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI------QTVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..+...++.||+.+.... ...+. ++.+... ...++...+||+|||||++|||||++
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 7766678999999765321 11112 2222222 23345555699999999999999974
No 219
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.1e-28 Score=173.96 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=87.6
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~ 65 (127)
.|+++|+++.|++ +.+++|+||++++||+++|+||||||||||+++|+|. |++.++ .++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 4789999999975 5799999999999999999999999999999999994 333222 2789
Q ss_pred eeecccCCCCcchHHHHHHHHhhhh----HHHHHHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQT----VCKVKELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..+ +.|+.||+.+...... .+.++...... ........+||+||||||+||+||++
T Consensus 82 ~~q~~~~~-~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 82 VLQDTFLF-SGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred ecCCchhh-hhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99987543 4599999876532111 11111111110 01123345699999999999999974
No 220
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=6.7e-28 Score=192.02 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=70.5
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCC
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~ 75 (127)
++++++|++++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|.. ++.++ .++|++|++..+..
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCC
Confidence 3799999999998 788999999999999999999999999999999999953 33332 48999999877667
Q ss_pred cchHHHHHHH
Q psy18211 76 GTTLNLLKEI 85 (127)
Q Consensus 76 ~t~~~~l~~~ 85 (127)
.|+.||+.+.
T Consensus 83 ~tv~e~i~~~ 92 (552)
T TIGR03719 83 KTVRENVEEG 92 (552)
T ss_pred CcHHHHHHHh
Confidence 8999998763
No 221
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=175.65 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=90.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------ee--ee-------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CK--IK------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~--~~------------- 61 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|... +. ++
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 47999999999998889999999999999999999999999999999999421 21 11
Q ss_pred ---eeeeeeecccCCCCcchHHHHHHHHhh--h-----hHHHHHHHHhH-------hhhcccCCCCCCcccchhhhhHhh
Q psy18211 62 ---ASDLISRATTSPWPGTTLNLLKEIIKI--Q-----TVCKVKELGKK-------ILLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 62 ---~i~~~~q~~~~~~~~t~~~~l~~~~~~--~-----~~~~~~~~~~~-------~~~~~~~~~~LSgGekqrv~ia~a 124 (127)
.++|++|++..+ +.|+.+|+.+.... . ....+.+.... ....+....+||||||||++||||
T Consensus 103 ~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lara 181 (271)
T PRK14238 103 LRTNVGMVFQKPNPF-PKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARC 181 (271)
T ss_pred HhhhEEEEecCCccc-cccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 278999987654 45999999764321 0 11112221111 112345556799999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 182 L~~ 184 (271)
T PRK14238 182 LAI 184 (271)
T ss_pred HHc
Confidence 974
No 222
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=1.1e-27 Score=170.40 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=88.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------eeeeeeeec
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------KASDLISRA 69 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------~~i~~~~q~ 69 (127)
++++|+++.|+. .+.++||++++||+++|+||||||||||+++|+|.. ++.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 568999999999999999999999999999999953 2222 127899999
Q ss_pred ccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 70 TTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+..++..|+.||+.+.... ..+..+.++.... ...++.+.+||+|||||++|||||+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 8776678999998754211 1122222222221 23455566799999999999999874
No 223
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.5e-28 Score=169.01 Aligned_cols=102 Identities=14% Similarity=0.118 Sum_probs=84.3
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ce--ee----------eeee
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LC--KI----------KASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~--~~----------~~i~ 64 (127)
.|+++|+++.|++ +++|+++||++++||+++|+||||||||||+++|+|.. .+ .+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6899999999974 67999999999999999999999999999999999942 22 22 1378
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..++..|+++|+.+... .. +||||||||++|||||++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~------~~--------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL------LR--------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH------Hh--------------cCCHHHhHHHHHHHHHhc
Confidence 99998766666799999875321 00 599999999999999974
No 224
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=8.2e-28 Score=170.25 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=89.1
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------ee
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i 63 (127)
+.++++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|. |++.++ .+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46999999999975 4799999999999999999999999999999999994 222221 38
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++... +.|+.+|+.+.... ....+.+... .+....+||+||+||++|||||+.
T Consensus 85 ~~v~q~~~~~-~~tv~~~l~~~~~~-~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 85 TIIPQDPTLF-SGTIRSNLDPFDEY-SDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred EEEecCCccc-CccHHHHhcccCCC-CHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 9999997554 56999998653211 1112222111 234556699999999999999973
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=5.4e-28 Score=174.24 Aligned_cols=120 Identities=14% Similarity=0.145 Sum_probs=86.9
Q ss_pred eeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeee
Q psy18211 7 LEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~ 65 (127)
++++|++++|++ +++|+++||++++||+++|+|+||||||||+++|+|. |++.++ .++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 6799999999999999999999999999999999995 333222 2789
Q ss_pred eeecccCCCCcchHHHHHHHHhh----hhHHHHHHHHhH-----h-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI----QTVCKVKELGKK-----I-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~-----~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|+.||+.+.... .....++..... . ...+..+.+|||||||||+|||||++
T Consensus 81 ~~q~~~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 81 VLQENVL-FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EcCCchh-ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 9998754 467999998764311 111111111100 0 11234556799999999999999974
No 226
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=4e-28 Score=196.01 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=92.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---eeeeeeeccc-CCCC
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---ASDLISRATT-SPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---~i~~~~q~~~-~~~~ 75 (127)
++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|. |.+.++ .++|++|+.. .++.
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~ 397 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPE 397 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCC
Confidence 479999999999988999999999999999999999999999999999995 333333 3899999753 4556
Q ss_pred cchHHHHHHHHhh----hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI----QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.+++...... .... .+..+.......++...+|||||||||+||++|++
T Consensus 398 ~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred CCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 7999998764311 1112 22222222122345556699999999999999974
No 227
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.3e-28 Score=188.91 Aligned_cols=122 Identities=15% Similarity=0.030 Sum_probs=96.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------ee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------AS 63 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i 63 (127)
.|+++++|++|+|++.++|++|||++++||+.+|+|.||||||||+|+|+|. |++.++ +|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 4689999999999999999999999999999999999999999999999994 333333 38
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh----------h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI----------Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+.+.|+....+.+||.||+.+.... . ..+.++++..... .+....+||.||||.|+|||||.
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence 8999999999999999999765421 1 1122222222222 44444569999999999999986
No 228
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=6.4e-28 Score=191.24 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=91.1
Q ss_pred CeeeeceeEEEeC-----------CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeee--------
Q psy18211 5 PALEGREVILVAR-----------PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIK-------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~-----------~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~-------- 61 (127)
++|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|. |++.++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccc
Confidence 4799999999995 36799999999999999999999999999999999994 222221
Q ss_pred ---------eeeeeeeccc--CCCCcchHHHHHHHHh-h-------hhHHHHHHHHhHh----hhcccCCCCCCcccchh
Q psy18211 62 ---------ASDLISRATT--SPWPGTTLNLLKEIIK-I-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKP 118 (127)
Q Consensus 62 ---------~i~~~~q~~~--~~~~~t~~~~l~~~~~-~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqr 118 (127)
.++|++|++. ..+..|+.+|+.+... . ...+.+.++.... ...++...+||||||||
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 2789999863 4455799999976431 0 1112222322222 22355566799999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+|||||+.
T Consensus 434 v~la~al~~ 442 (529)
T PRK15134 434 IAIARALIL 442 (529)
T ss_pred HHHHHHHhC
Confidence 999999974
No 229
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.6e-28 Score=166.74 Aligned_cols=94 Identities=19% Similarity=0.134 Sum_probs=80.1
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-------------eeeeeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-------------KASDLISR 68 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-------------~~i~~~~q 68 (127)
++++|++++|++.++|+++||++++||+++|+||||||||||+++|+|.. ++.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 47899999998888999999999999999999999999999999999942 2221 13789999
Q ss_pred cccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++..++.||+. ||+|||||++|||||+.
T Consensus 81 ~~~~~~~~tv~~~~~---------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 81 EPSLYENLTVRENLK---------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred CCccccCCcHHHHhh---------------------------cCHHHHHHHHHHHHHHc
Confidence 876665668888863 99999999999999974
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.1e-27 Score=189.53 Aligned_cols=123 Identities=18% Similarity=0.102 Sum_probs=92.3
Q ss_pred CeeeeceeEEEeC-----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------
Q psy18211 5 PALEGREVILVAR-----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------- 61 (127)
++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|. |++.++
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 4799999999994 25799999999999999999999999999999999994 233331
Q ss_pred --------eeeeeeecccCCCCcchHHHHHHHHh----h-hhHHHHHHHHhHhh--------hcccCCCCCCcccchhhh
Q psy18211 62 --------ASDLISRATTSPWPGTTLNLLKEIIK----I-QTVCKVKELGKKIL--------LSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 62 --------~i~~~~q~~~~~~~~t~~~~l~~~~~----~-~~~~~~~~~~~~~~--------~~~~~~~~LSgGekqrv~ 120 (127)
.++|++|++...+..|+.+|+.+... . ...+.+.++..... ..++.+.+|||||||||+
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 27899998766667899999976421 1 11122222222222 234566679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||+.
T Consensus 438 laral~~ 444 (520)
T TIGR03269 438 LAQVLIK 444 (520)
T ss_pred HHHHHhc
Confidence 9999974
No 231
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=7.5e-28 Score=173.09 Aligned_cols=120 Identities=20% Similarity=0.150 Sum_probs=87.1
Q ss_pred eeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 7 LEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
|+++|+++.|+++ ++++++||++++||+++|+||||||||||+++|+|.. ++.++ .++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999865 8999999999999999999999999999999999953 22221 2789
Q ss_pred eeecccCCCCcchHHHHHHHHhhhh----HHHH-----HHHHhHh-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQT----VCKV-----KELGKKI-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~-----~~~~~~~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..+ +.|+.||+.+...... .... .+..... ...+....+||+|||||++|||||++
T Consensus 81 ~~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 81 VSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred eCCCCeec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99987554 5799999976432111 1111 1111100 11234455699999999999999974
No 232
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=176.16 Aligned_cols=122 Identities=15% Similarity=0.132 Sum_probs=88.0
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-----------eeeeee
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-----------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-----------~i~~~~ 67 (127)
.+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 4799999999995 578999999999999999999999999999999999953 22221 388999
Q ss_pred ecccCC--CCcchHHHHHHHHh----------hhhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSP--WPGTTLNLLKEIIK----------IQTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~--~~~t~~~~l~~~~~----------~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++... ++.++.+++.+... ....+ .++.+... ...++...+||||||||++|||||++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~ 159 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQ 159 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 986542 23456777643110 11111 22222222 23355556799999999999999974
No 233
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=8.1e-28 Score=171.62 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=87.7
Q ss_pred eeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeee
Q psy18211 7 LEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~ 65 (127)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|. |++.++ .++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 789999999964 4799999999999999999999999999999999994 323221 2789
Q ss_pred eeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|+.||+...... ...+.++.+...... ......+||+|||||++|||||++
T Consensus 83 ~~q~~~l-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 83 IPQDPVL-FSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred ECCCCcc-ccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 9998764 456999998643211 111222222221111 123556699999999999999974
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=193.11 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=91.6
Q ss_pred CeeeeceeEEEeCC-----------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee--------
Q psy18211 5 PALEGREVILVARP-----------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI-------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-----------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~-------- 60 (127)
++|+++|+++.|+. +.+|+++||+|++||+++|+|+||||||||+|+|+|. |++.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 58999999999961 4699999999999999999999999999999999994 22222
Q ss_pred ---------eeeeeeeecc--cCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchh
Q psy18211 61 ---------KASDLISRAT--TSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKP 118 (127)
Q Consensus 61 ---------~~i~~~~q~~--~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqr 118 (127)
..++|++|++ ...+..|+.+++.+.... ...+.+.++.... ...++.+.+||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 1379999986 345567999998764311 1112233332222 23356667799999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+|||||+.
T Consensus 472 v~iAraL~~ 480 (623)
T PRK10261 472 ICIARALAL 480 (623)
T ss_pred HHHHHHHhc
Confidence 999999973
No 235
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.7e-28 Score=168.16 Aligned_cols=96 Identities=18% Similarity=0.095 Sum_probs=78.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee----------------eeeee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI----------------KASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~----------------~~i~~ 65 (127)
|+++|+++.|+++++++++||++++||+++|+||||||||||+++|+|... +.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999998889999999999999999999999999999999999522 211 12667
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..++..|+.||+.+. ||+|||||++|||||++
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~-------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG-------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EecCCccCCCCCHHHheeec-------------------------CCHHHHHHHHHHHHHHC
Confidence 77776555456777766432 99999999999999974
No 236
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.95 E-value=5.7e-28 Score=192.53 Aligned_cols=121 Identities=22% Similarity=0.201 Sum_probs=91.5
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|. |++.+++ ++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 4899999999964 6799999999999999999999999999999999994 3444432 89
Q ss_pred eeeecccCCCCcchHHHHHHHHh-hhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK-IQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++. .++.|++||+.++.. ...++.+.+..... .++ ...+..||||||||++|||||++
T Consensus 410 ~v~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVV-LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCcc-cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999975 467799999987643 22233333221111 011 12345699999999999999974
No 237
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.3e-28 Score=170.16 Aligned_cols=123 Identities=12% Similarity=0.064 Sum_probs=97.3
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee----------------
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA---------------- 62 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~---------------- 62 (127)
++.|+++|+.|+||.+.+|+.||++.+.||+|.|||.+||||||+||+|+-.. .+.+++
T Consensus 4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 45799999999999999999999999999999999999999999999998743 222221
Q ss_pred -----------eeeeeecccCCCCcchHHHHHHHHh-------hh----hHHHHHHHHhHhhhcccCCCCCCcccchhhh
Q psy18211 63 -----------SDLISRATTSPWPGTTLNLLKEIIK-------IQ----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 63 -----------i~~~~q~~~~~~~~t~~~~l~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ 120 (127)
.+++||+.+.+..+|+.||+..... .. .+..+++.+.. +..+.++.+|||||+||++
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~a 162 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVA 162 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHH
Confidence 6899999998889999999876431 11 22333344443 3345677789999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
|||||..
T Consensus 163 IARaLam 169 (256)
T COG4598 163 IARALAM 169 (256)
T ss_pred HHHHHhc
Confidence 9999963
No 238
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.95 E-value=1.5e-27 Score=181.29 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=86.0
Q ss_pred eeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------------eeeeeee
Q psy18211 11 EVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------KASDLIS 67 (127)
Q Consensus 11 ~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------~~i~~~~ 67 (127)
|++++|+++. + ++||+|++||+++|+||||||||||+++|+|.. ++.+ ..++|++
T Consensus 4 ~l~~~~~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 8999998765 4 999999999999999999999999999999952 2211 1278999
Q ss_pred ecccCCCCcchHHHHHHHHhh----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++.+|+.||+.+.... .....+.++.... ...++.+.+|||||||||+|||||+.
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 998776678999999875421 1111222222222 23455666799999999999999974
No 239
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=178.56 Aligned_cols=121 Identities=13% Similarity=0.045 Sum_probs=90.2
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceee---------------
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKI--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~--------------- 60 (127)
+|+++|++++|. .+++|+|+||+|++||+++|+|+||||||||+++|+|.. .+.+
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred eEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 799999999995 357999999999999999999999999999999999953 2221
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh--h-hHH----HHHHHHhHhh-------hcccCCCCCCcccchhhhhHh
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI--Q-TVC----KVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~--~-~~~----~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~ 123 (127)
..++|+||++..+ ..|+++|+.+.... . ..+ .......... .....+.+||||||||++|||
T Consensus 160 ~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 160 ELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred hhhccEEEEecCCccC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 1389999997654 67999999864321 0 111 1122222111 224556679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 239 Al~~ 242 (329)
T PRK14257 239 AIAL 242 (329)
T ss_pred HHHh
Confidence 9974
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=1.4e-27 Score=170.56 Aligned_cols=122 Identities=14% Similarity=0.097 Sum_probs=91.2
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee----------------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------- 60 (127)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|.. ++.+
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 3789999999975 67999999999999999999999999999999999942 2211
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.+|+.+.... .....+.++.... ...+..+.+||+|||||++|||||++
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~ 158 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVH 158 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1378999998766667999998764321 0111222222222 23345556799999999999999974
No 241
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=2.1e-27 Score=173.00 Aligned_cols=121 Identities=18% Similarity=0.092 Sum_probs=87.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce---------ee------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC---------KI------------KASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~---------~~------------~~i~ 64 (127)
+|+++|++++| ++++|+++||+|++||+++|+|+||||||||+++|+|...+ .+ ..++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 69999999999 67899999999999999999999999999999999995322 22 1388
Q ss_pred eeeecccC--CCCcchHHHHHHHHh----hhhHHHHHHHHhHhh------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTS--PWPGTTLNLLKEIIK----IQTVCKVKELGKKIL------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~--~~~~t~~~~l~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ....++.+++..... ...++.+.++..... ..+....+||||||||++|||||+.
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 157 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLC 157 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhc
Confidence 99998742 233577777654321 111222333222222 2345556799999999999999974
No 242
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=1.4e-27 Score=167.88 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=84.9
Q ss_pred CeeeeceeEEEeCC------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--ceee----------------
Q psy18211 5 PALEGREVILVARP------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--LCKI---------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--~~~~---------------- 60 (127)
+.|+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|.. .+..
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35899999999975 68999999999999999999999999999999999965 4321
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..|+.||+.+... +. +||+|||||++|||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~~i~~~~~------~~--------------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 82 KIIGYVPQDDILHPTLTVRETLMFAAK------LR--------------GLSGGERKRVSIALELVS 128 (194)
T ss_pred heEEEccCcccCCCCCcHHHHHHHHHH------hc--------------cCCHHHHHHHHHHHHHHc
Confidence 127889988766666799998865321 00 599999999999999974
No 243
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.95 E-value=8.5e-28 Score=191.78 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=90.7
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------ee
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i 63 (127)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|. |++.++ .+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 4899999999964 5799999999999999999999999999999999994 333333 28
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHH----HHHHhHh-------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKV----KELGKKI-------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~~-------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|+||++. .++.|++||+.++.+...++.+ +...... .+. ...+..||||||||++|||||++
T Consensus 417 ~~~~Q~~~-lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~ 493 (576)
T TIGR02204 417 ALVPQDPV-LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK 493 (576)
T ss_pred eEEccCCc-cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 99999875 5678999999875432222222 2211110 011 22345699999999999999974
No 244
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=1.6e-27 Score=188.63 Aligned_cols=121 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-------ceeee------------------
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-------LCKIK------------------ 61 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-------~~~~~------------------ 61 (127)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|.. ++.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999999888999999999999999999999999999999999962 11121
Q ss_pred -----------------------------eeeeeeec-ccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---h
Q psy18211 62 -----------------------------ASDLISRA-TTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---L 102 (127)
Q Consensus 62 -----------------------------~i~~~~q~-~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~ 102 (127)
.++|++|+ ...+...++.+++.+.... ...+.+.++.... .
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 26888886 4444557999999764321 1112222222222 2
Q ss_pred hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 103 LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 103 ~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++...+|||||||||+||+||++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~ 185 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAK 185 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhc
Confidence 3345566799999999999999974
No 245
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=6.9e-28 Score=189.45 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=88.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~~ 66 (127)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 699999999999888999999999999999999999999999999999942 22221 16788
Q ss_pred eecccCC--------CCcchHHHHHHHHh--hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSP--------WPGTTLNLLKEIIK--IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~--------~~~t~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++... +..++.+++..... ....+.++.+... ...++...+|||||||||+||+||+.
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 8865321 13467776643211 1122334444333 23455666799999999999999974
No 246
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.95 E-value=2.7e-27 Score=178.44 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=90.3
Q ss_pred CCeeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc------eee-------------
Q psy18211 4 WPALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL------CKI------------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~------~~~------------- 60 (127)
.++|+++|+++.|+ ...+++||||+|++||+++|+|+||||||||+++|+|... +.+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45899999999995 2569999999999999999999999999999999999532 211
Q ss_pred -------eeeeeeeeccc--CCCCcchHHHHHHHHhh-------hhHHHHHHHHhHhhh------cccCCCCCCcccchh
Q psy18211 61 -------KASDLISRATT--SPWPGTTLNLLKEIIKI-------QTVCKVKELGKKILL------SQVKGKNMSKTEKKP 118 (127)
Q Consensus 61 -------~~i~~~~q~~~--~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~LSgGekqr 118 (127)
..++|+||++. ..+.+++.+++...... .....+.++.....+ .++.+.+||||||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 13899999973 44556888877543211 111222332222211 244667799999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+|||||+.
T Consensus 170 v~IArAL~~ 178 (330)
T PRK09473 170 VMIAMALLC 178 (330)
T ss_pred HHHHHHHHc
Confidence 999999973
No 247
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=172.30 Aligned_cols=121 Identities=11% Similarity=0.033 Sum_probs=88.7
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e---------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I--------------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~--------------- 60 (127)
.-+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|.. .+. +
T Consensus 5 ~~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 5 HASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 357899999999889999999999999999999999999999999999853 221 1
Q ss_pred -eeeeeeeecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhh
Q psy18211 61 -KASDLISRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 -~~i~~~~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~a 124 (127)
..++|++|++..+. .++.+|+.+.... ..++.+.++..... ..+..+.+||||||||++||||
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 85 RAKVGMVFQKPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred hhhEEEEecCccccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 12789999876544 5999998764210 11122222222221 1234455699999999999999
Q ss_pred hhC
Q psy18211 125 LIK 127 (127)
Q Consensus 125 L~~ 127 (127)
|++
T Consensus 164 l~~ 166 (251)
T PRK14244 164 IAV 166 (251)
T ss_pred Hhc
Confidence 974
No 248
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=1.6e-27 Score=182.36 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=85.5
Q ss_pred eEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee----------------------eeee
Q psy18211 12 VILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI----------------------KASD 64 (127)
Q Consensus 12 l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~----------------------~~i~ 64 (127)
+.+.|+...+++|+||+|++||+++|+|+||||||||+|+|+|. |++.+ ..++
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 34445555799999999999999999999999999999999994 22211 1389
Q ss_pred eeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++..++..|+.||+.+.... .....+.++.... .+.+..+.+|||||||||+|||||++
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~ 181 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAM 181 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999998877778999999876421 1112222222222 23455666799999999999999974
No 249
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.5e-27 Score=171.74 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=86.9
Q ss_pred eeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeeee
Q psy18211 7 LEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~~ 66 (127)
++++|++++|+ ++.+++|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 577999999999999999999999999999999999953 33332 27899
Q ss_pred eecccCCCCcchHHHHHHHHhhhhH----HHHHHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTV----CKVKELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..+ +.|+.+|+.+....... ..++...... ...++...+||+|||||++|||||++
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~ 154 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILK 154 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9987544 67999999764321111 1111111100 01223345699999999999999974
No 250
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=1.4e-27 Score=165.64 Aligned_cols=95 Identities=20% Similarity=0.205 Sum_probs=77.5
Q ss_pred eeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee-------------eeeee
Q psy18211 7 LEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-------------ASDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-------------~i~~~ 66 (127)
|+++|++++|+++ ++++|+||+|++||+++|+||||||||||+++|+|..+ +.++ .++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 5789999999765 79999999999999999999999999999999999532 2221 26777
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++..+ +.+++||+ ..+||+|||||++|||||++
T Consensus 81 ~q~~~~~-~~tv~~~i-------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 81 NQRPYLF-DTTLRNNL-------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred ccCCeee-cccHHHhh-------------------------cccCCHHHHHHHHHHHHHhc
Confidence 7776433 45777765 45699999999999999974
No 251
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.95 E-value=1.6e-27 Score=166.83 Aligned_cols=112 Identities=14% Similarity=0.042 Sum_probs=80.7
Q ss_pred eCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------------eeeeeeeccc-CC
Q psy18211 16 ARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------------ASDLISRATT-SP 73 (127)
Q Consensus 16 ~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------------~i~~~~q~~~-~~ 73 (127)
|+++.+|+++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++. ..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 46678999999999999999999999999999999999942 22221 2789999863 34
Q ss_pred CCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 74 WPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 74 ~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++.|+.||+.+.... ...+.+.++.... ...++...+||+|||||++|||||++
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 144 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAM 144 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 467999999864321 1111222222221 23455556799999999999999974
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.5e-27 Score=168.52 Aligned_cols=117 Identities=17% Similarity=0.049 Sum_probs=86.0
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee------------------eee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------KAS 63 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------~~i 63 (127)
+.+ ||+++|+++.+ |+||+|++ |+++|+||||||||||+++|+|.. ++.+ ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 345 99999998765 99999999 999999999999999999999942 2211 137
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..++..|+.+|+.+.... ..++.+.++.... ...+....+||||||||++||+||+.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999988766678999998765321 1122222222222 22345556699999999999999974
No 253
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=1.4e-27 Score=171.06 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------
Q psy18211 4 WPALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------- 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------- 61 (127)
.++++++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|.. ++.++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 358999999999975 46999999999999999999999999999999999953 22221
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhhh----h---------HHHHHHH--HhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKIQ----T---------VCKVKEL--GKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~----~---------~~~~~~~--~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.++|++|++.. ++.|+.||+.+..... . .+.++.+ ... ...+....+|||||||||+|||||+
T Consensus 89 ~i~~~~q~~~l-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 89 KVSLVGQEPVL-FARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hEEEEecccHH-HhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHh
Confidence 27899998754 4569999987543110 0 1112222 111 1234445679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 167 ~ 167 (226)
T cd03248 167 R 167 (226)
T ss_pred c
Confidence 4
No 254
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=189.25 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=93.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCCc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWPG 76 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~~ 76 (127)
.+|+++|+++.|+++++|+++||++.+|++|||||+||||||||||+|+|.. ++... .++|++|++......
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEK 81 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCc
Confidence 4799999999999999999999999999999999999999999999999953 23332 399999999887777
Q ss_pred chHHHHHHHHhh--hh----------------------------------HHHHHHHHhHhhhc--ccCCCCCCcccchh
Q psy18211 77 TTLNLLKEIIKI--QT----------------------------------VCKVKELGKKILLS--QVKGKNMSKTEKKP 118 (127)
Q Consensus 77 t~~~~l~~~~~~--~~----------------------------------~~~~~~~~~~~~~~--~~~~~~LSgGekqr 118 (127)
|+.+.+...... .. +.+++.......+. +++..+||||||.|
T Consensus 82 tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~R 161 (530)
T COG0488 82 TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRR 161 (530)
T ss_pred cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHH
Confidence 888877654311 00 01111111111111 45556799999999
Q ss_pred hhhHhhhhC
Q psy18211 119 LQPQYSLIK 127 (127)
Q Consensus 119 v~ia~aL~~ 127 (127)
|+||+||+.
T Consensus 162 v~LA~aL~~ 170 (530)
T COG0488 162 VALARALLE 170 (530)
T ss_pred HHHHHHHhc
Confidence 999999973
No 255
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=2e-27 Score=175.23 Aligned_cols=120 Identities=23% Similarity=0.192 Sum_probs=88.3
Q ss_pred eeeeceeEEEe--CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeee--------------eeee
Q psy18211 6 ALEGREVILVA--RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~--~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~--------------~i~~ 65 (127)
.|+++|++++| ++..+|+|+||+|++||+++|+|+||||||||+++|+|. |++.++ .++|
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 37899999999 457799999999999999999999999999999999994 333332 2799
Q ss_pred eeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHhhhcccC-----------CCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKILLSQVK-----------GKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~-----------~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++..+ +.|+++|+...... ...+.++.++... ..+.. +..||+|||||++|||||++
T Consensus 82 v~q~~~lf-~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~-~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~ 155 (275)
T cd03289 82 IPQKVFIF-SGTFRKNLDPYGKWSDEEIWKVAEEVGLKS-VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLS 155 (275)
T ss_pred ECCCcccc-hhhHHHHhhhccCCCHHHHHHHHHHcCCHH-HHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99997654 56999999643211 1122333332221 12222 23499999999999999974
No 256
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=3e-27 Score=171.25 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=83.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--c---e--ee---------------eee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--L---C--KI---------------KAS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--~---~--~~---------------~~i 63 (127)
||+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|.. + + .+ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 488999999999888999999999999999999999999999999999962 1 2 11 127
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh-------------hhHHHHHHHHhHh----hhcccCC-CCCCcccchhhhhHhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI-------------QTVCKVKELGKKI----LLSQVKG-KNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~-------------~~~~~~~~~~~~~----~~~~~~~-~~LSgGekqrv~ia~aL 125 (127)
+|++|++..+...+..+++...... ...+.+.+..... ...++.. .+||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 7888886554444444443221100 0011122221111 1223333 26999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 161 ~~ 162 (248)
T PRK09580 161 VL 162 (248)
T ss_pred Hc
Confidence 74
No 257
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.95 E-value=2.9e-27 Score=169.53 Aligned_cols=122 Identities=17% Similarity=0.136 Sum_probs=90.4
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc---ee-----e-----------ee
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL---CK-----I-----------KA 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~---~~-----~-----------~~ 62 (127)
.+.++|++++|.+ +++++++||+|++||+++|+||||||||||+++|+|... +. + ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4789999999964 589999999999999999999999999999999999543 21 1 13
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhhh-----h----HHHHHH-HHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKIQ-----T----VCKVKE-LGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~----~~~~~~-~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++..++..|+.||+.+..... . ...... ..... ...++...+||+|||||++|||||++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 789999887766779999998643210 0 011111 11111 22344556699999999999999973
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=1.9e-27 Score=171.50 Aligned_cols=120 Identities=19% Similarity=0.197 Sum_probs=86.2
Q ss_pred eeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eee
Q psy18211 7 LEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASD 64 (127)
Q Consensus 7 l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~ 64 (127)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|. |++.++ .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 4699999999999999999999999999999999995 333222 278
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhh----HHHHHHHHhH-----h-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQT----VCKVKELGKK-----I-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~----~~~~~~~~~~-----~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+ +.|+.||+.+...... ...++..... . ...+....+|||||||||+|||||+.
T Consensus 81 ~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~ 156 (238)
T cd03249 81 LVSQEPVLF-DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR 156 (238)
T ss_pred EECCchhhh-hhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence 999987554 4699999876432111 1111111110 0 01233446799999999999999974
No 259
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.1e-27 Score=171.52 Aligned_cols=122 Identities=11% Similarity=0.042 Sum_probs=90.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----------eee--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----------CKI-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----------~~~-------------- 60 (127)
++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|... +.+
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~ 94 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDP 94 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCH
Confidence 47999999999998889999999999999999999999999999999999532 111
Q ss_pred ----eeeeeeeecccCCCCcchHHHHHHHHhh-------hhHHHHHHHHhHh-------hhcccCCCCCCcccchhhhhH
Q psy18211 61 ----KASDLISRATTSPWPGTTLNLLKEIIKI-------QTVCKVKELGKKI-------LLSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 61 ----~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~~LSgGekqrv~ia 122 (127)
..++|++|++..+. .|+.||+.+.... ..++.+..+.... ...++...+||+|||||++||
T Consensus 95 ~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 95 IEVRMRISMVFQKPNPFP-KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHhccEEEEccCCcCCc-chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 12789999876554 5999999764321 1112222222211 123445556999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||++
T Consensus 174 ral~~ 178 (265)
T PRK14252 174 RALAT 178 (265)
T ss_pred HHHHc
Confidence 99974
No 260
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=188.46 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=89.3
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eeeeeee
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASDLISR 68 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~~~~q 68 (127)
++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 479999999888999999999999999999999999999999999942 22221 2789999
Q ss_pred cccCCCCcchHHHHHHHHh---h------hhHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIK---I------QTVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~---~------~~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++...+..|+.+|+.+... . ...+.+.++..... ..++...+|||||||||+|||||++
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 8876667899999875421 0 01112222222222 2345556799999999999999974
No 261
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=2.4e-27 Score=165.10 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=79.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~ 64 (127)
++|+++|++++| +++++||++++||+++|+|+||||||||+++|+|.. ++.++ .++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 579999999999 999999999999999999999999999999999942 22221 378
Q ss_pred eeeecc---cCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRAT---TSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~---~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++ ..++..|+.||+.+... ||+|||||++|||||++
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~-----------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL-----------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh-----------------------cCHHHHHHHHHHHHHcc
Confidence 888874 24455689998865421 99999999999999974
No 262
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.1e-28 Score=186.92 Aligned_cols=121 Identities=19% Similarity=0.235 Sum_probs=94.1
Q ss_pred eeeeceeEEEeCCCC--ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARPEP--NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~--~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.++++|++|+|++.+ +|+|+||++++||+++|+|++|||||||+++++|. |++..++ ++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 589999999998754 99999999999999999999999999999999983 4444332 56
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh----h----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI----L----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+++|... .|..|+++|+....++..++.+.+..... . +...-+..||||||||++|||+|++
T Consensus 416 vl~Qr~h-lF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 416 VLTQRVH-LFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred hhccchH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 6777654 46679999999887665555444433222 1 2234556799999999999999985
No 263
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=7.4e-27 Score=174.38 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=91.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eee----------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKI---------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~---------------- 60 (127)
++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|... +.+
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 47999999999998899999999999999999999999999999999999531 211
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-------------------hhHHHHHHHHhHh-------hhcccCCCCCC
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-------------------QTVCKVKELGKKI-------LLSQVKGKNMS 112 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-------------------~~~~~~~~~~~~~-------~~~~~~~~~LS 112 (127)
..++|++|++..+ +.++.+|+.+.... ..++.+..+.... ...+....+||
T Consensus 124 ~~~~i~~v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 202 (305)
T PRK14264 124 LRKRVGMVFQSPNPF-PKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLS 202 (305)
T ss_pred HhhceEEEccCCccc-cccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCC
Confidence 1378999987544 46999999864311 0112222222211 12244556799
Q ss_pred cccchhhhhHhhhhC
Q psy18211 113 KTEKKPLQPQYSLIK 127 (127)
Q Consensus 113 gGekqrv~ia~aL~~ 127 (127)
||||||++|||||++
T Consensus 203 gGq~qrv~LAraL~~ 217 (305)
T PRK14264 203 GGQQQRLCIARCLAV 217 (305)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999974
No 264
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.95 E-value=1.2e-27 Score=206.15 Aligned_cols=121 Identities=18% Similarity=0.111 Sum_probs=92.6
Q ss_pred eeeeceeEEEeC---CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce------------------------
Q psy18211 6 ALEGREVILVAR---PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC------------------------ 58 (127)
Q Consensus 6 ~l~~~~l~~~~~---~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~------------------------ 58 (127)
.|+++||+|+|+ ++++|+|+||+|++|+++||+||+|||||||+++|+|..++
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 489999999996 35799999999999999999999999999999999995443
Q ss_pred -----------------------------------eeee--------------eeeeeecccCCCCcchHHHHHHHHhhh
Q psy18211 59 -----------------------------------KIKA--------------SDLISRATTSPWPGTTLNLLKEIIKIQ 89 (127)
Q Consensus 59 -----------------------------------~~~~--------------i~~~~q~~~~~~~~t~~~~l~~~~~~~ 89 (127)
.+++ ++||+|++.. |+.|++||+.++.+..
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCCCC
Confidence 1121 8999999754 6889999999875433
Q ss_pred hHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 90 TVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 90 ~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++.+.+..... .+. ...+.+||||||||++|||||++
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr 1375 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLR 1375 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhc
Confidence 333333322211 111 23345799999999999999985
No 265
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=2.6e-27 Score=163.79 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=76.0
Q ss_pred eeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 7 LEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|.. ++.++ .++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 56999999999999999999999999999999999953 22221 2677
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++..+ +.|+.||+ ||||||||++|||||++
T Consensus 81 ~~q~~~~~-~~tv~~~l----------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 81 LPQDDELF-SGSIAENI----------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred ECCCCccc-cCcHHHHC----------------------------cCHHHHHHHHHHHHHhc
Confidence 87776433 35777765 99999999999999974
No 266
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=3.3e-27 Score=189.19 Aligned_cols=121 Identities=15% Similarity=0.083 Sum_probs=94.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce---ee---eeeeeeeecccCCCCcch
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC---KI---KASDLISRATTSPWPGTT 78 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~---~~---~~i~~~~q~~~~~~~~t~ 78 (127)
++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|...+ .+ ..++|++|+....+..|+
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTV 417 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcH
Confidence 479999999999875 49999999999999999999999999999999995432 22 248999999877777899
Q ss_pred HHHHHHHHhh-----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEIIKI-----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+++.+.... ...+.++.+... ...++...+|||||||||+||+||++
T Consensus 418 ~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~ 470 (590)
T PRK13409 418 EDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSR 470 (590)
T ss_pred HHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9998764211 112334444443 33455666799999999999999974
No 267
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=6.2e-27 Score=185.63 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=89.8
Q ss_pred CeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eee------------
Q psy18211 5 PALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKI------------ 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~------------ 60 (127)
|+|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|... +.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 58999999999963 579999999999999999999999999999999999532 211
Q ss_pred --------eeeeeeeeccc--CCCCcchHHHHHHHHh-------hhhHHHHHHHHhHhhh------cccCCCCCCcccch
Q psy18211 61 --------KASDLISRATT--SPWPGTTLNLLKEIIK-------IQTVCKVKELGKKILL------SQVKGKNMSKTEKK 117 (127)
Q Consensus 61 --------~~i~~~~q~~~--~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~~~------~~~~~~~LSgGekq 117 (127)
..++|++|++. ..+..++.+++..... ....+.+.++.....+ .++...+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 13789999864 3334578888764321 0112223333322222 35566679999999
Q ss_pred hhhhHhhhhC
Q psy18211 118 PLQPQYSLIK 127 (127)
Q Consensus 118 rv~ia~aL~~ 127 (127)
||+|||||+.
T Consensus 164 rv~iAraL~~ 173 (529)
T PRK15134 164 RVMIAMALLT 173 (529)
T ss_pred HHHHHHHHhc
Confidence 9999999974
No 268
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.94 E-value=2.4e-27 Score=167.40 Aligned_cols=99 Identities=18% Similarity=0.109 Sum_probs=77.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--ce-----eee---------------eee
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--LC-----KIK---------------ASD 64 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--~~-----~~~---------------~i~ 64 (127)
|+++|++++|+++++++++||++++||+++|+|+||||||||+++|+|.. .+ .++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 57899999999888999999999999999999999999999999999962 22 111 166
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+...++.+++ +....+||+|||||++|||||++
T Consensus 81 ~v~q~~~~~~~~~~~~~l----------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL----------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred EeecChhhccCccHHHHH----------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 677765444444444443 22334699999999999999974
No 269
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=3.6e-27 Score=187.49 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=89.2
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|.. ++.++ .++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 5899999999964 58999999999999999999999999999999999953 33332 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHH----HHHHhH-----h-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKV----KELGKK-----I-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~-----~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.+......++.+ +..... . ......+.+||||||||++|||||++
T Consensus 396 ~v~q~~~l-f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 396 YLPQDVEL-FPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EecCCccc-ccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999755 456999999854321112211 111111 0 11223456699999999999999974
No 270
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-27 Score=185.06 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=93.0
Q ss_pred eeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eeee
Q psy18211 7 LEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~~ 66 (127)
++.+|+++.|++. ++++|+||++++|++++|+|+||||||||+++|+|. |++.+++ +.|+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 5566999999764 899999999999999999999999999999999994 4455543 8899
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh----hh---------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI----LL---------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++.. ++.|++||+.+......++.+.+..... .. ....+..|||||+|||++||||++
T Consensus 401 ~Q~p~l-f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 401 SQNPYL-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred CCCCcc-ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999754 6779999999877654444433322221 11 123345699999999999999974
No 271
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.94 E-value=4.8e-27 Score=184.21 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=93.1
Q ss_pred CCeeeeceeEEEeCC-----------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee------
Q psy18211 4 WPALEGREVILVARP-----------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK------ 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~-----------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~------ 61 (127)
.|+++++|+++.|.. ..+++||||++.+||++||+|++|||||||.|+|+|..++ .+.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 468999999999973 3689999999999999999999999999999999995332 221
Q ss_pred ----------eeeeeeecccC--CCCcchHHHHHHHHh-------hhhHHHHHHHHh----HhhhcccCCCCCCcccchh
Q psy18211 62 ----------ASDLISRATTS--PWPGTTLNLLKEIIK-------IQTVCKVKELGK----KILLSQVKGKNMSKTEKKP 118 (127)
Q Consensus 62 ----------~i~~~~q~~~~--~~~~t~~~~l~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~LSgGekqr 118 (127)
.+-++||++.. ++.+||.+++..+.. ...++++.++.. .....++++.+||||||||
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR 437 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR 437 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH
Confidence 25678887754 456699998887652 111223333333 2235577788899999999
Q ss_pred hhhHhhhh
Q psy18211 119 LQPQYSLI 126 (127)
Q Consensus 119 v~ia~aL~ 126 (127)
++|||||+
T Consensus 438 vaIARALa 445 (539)
T COG1123 438 VAIARALA 445 (539)
T ss_pred HHHHHHHh
Confidence 99999996
No 272
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=4e-27 Score=188.69 Aligned_cols=121 Identities=18% Similarity=0.173 Sum_probs=90.2
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~ 65 (127)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|. |++.++ .++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 4899999999975 6799999999999999999999999999999999994 333332 2789
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHH----HHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKV----KELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|++||+.+..+...++.+ +...... ......+.+||||||||++|||||++
T Consensus 414 v~q~~~l-f~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 414 VFQDAGL-FNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EccCCcc-CcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999754 467999999876432222211 1111100 11233455699999999999999974
No 273
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.1e-27 Score=163.10 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=74.0
Q ss_pred eeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee--------------eeee
Q psy18211 7 LEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK--------------ASDL 65 (127)
Q Consensus 7 l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~--------------~i~~ 65 (127)
|+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|...+ .++ .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5789999999876 799999999999999999999999999999999995332 221 1556
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.++.||+ ||+|||||++|||||++
T Consensus 81 ~~~~~~~-~~~t~~e~l----------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 81 VPQDPFL-FSGTIRENI----------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred EcCCchh-ccchHHHHh----------------------------hCHHHHHHHHHHHHHhc
Confidence 6666532 334555554 99999999999999974
No 274
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=169.92 Aligned_cols=122 Identities=9% Similarity=0.064 Sum_probs=91.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------cee--e--------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCK--I-------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~--~-------------- 60 (127)
+.+.++++++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++. +
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 4699999999999989999999999999999999999999999999999853 221 1
Q ss_pred --eeeeeeeecccCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHhh-------hcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 --KASDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKIL-------LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 --~~i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..++|++|++..+ ..|+.||+.+.... ...+.+.+...... ..+....+||+||+||++|||||+
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1278999987654 68999999765321 11122222222111 123445569999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 166 ~ 166 (261)
T PRK14263 166 T 166 (261)
T ss_pred c
Confidence 4
No 275
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=1.5e-27 Score=171.00 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=97.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------eeeeeeecc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------ASDLISRAT 70 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------~i~~~~q~~ 70 (127)
+|++++|+|+||++.+++|+||++++|++.|++|+|||||||+||+|.|.. ++..+ .|||+|.+.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 589999999999999999999999999999999999999999999999953 33332 399999999
Q ss_pred cCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..+..+||.|.+.+... ......+..+.... ....+...+||.|.+|++.+-.|++|
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 99999999999988662 12222233333222 22334445699999999999998875
No 276
>KOG0056|consensus
Probab=99.94 E-value=1e-27 Score=185.48 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=93.1
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc-----CCceeeee--------------eee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ-----SDLCKIKA--------------SDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g-----~~~~~~~~--------------i~~ 65 (127)
-++++|+++.|+ ++++|+||||++.+|+.++|+||+|+||||++|++.+ .|.+.+++ ||.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 489999999996 6899999999999999999999999999999999998 45566654 899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||+...+ +-|+..|+.+......++.+....... ... -..+-.|||||||||+|||++++
T Consensus 617 VPQDtvLF-NdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 617 VPQDTVLF-NDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred ccCcceee-cceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 99998764 458999998876544333333222111 111 12233599999999999999875
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=2.9e-27 Score=186.70 Aligned_cols=123 Identities=9% Similarity=0.001 Sum_probs=89.7
Q ss_pred CeeeeceeEEEeC---CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----e--eee--------------
Q psy18211 5 PALEGREVILVAR---PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----C--KIK-------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~---~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----~--~~~-------------- 61 (127)
++|+++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+|+|+|... + .++
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 4799999999993 4679999999999999999999999999999999999532 1 211
Q ss_pred -eeeeeeeccc---CCCCcchHHHHHHHHh---------h--hhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhH
Q psy18211 62 -ASDLISRATT---SPWPGTTLNLLKEIIK---------I--QTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 62 -~i~~~~q~~~---~~~~~t~~~~l~~~~~---------~--~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia 122 (127)
.++|++|++. .++..|+.||+.+... . ...+.+.++..... ..++...+|||||||||+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 2789999852 4456799999875321 0 01122222222222 23455567999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||+.
T Consensus 418 ~al~~ 422 (506)
T PRK13549 418 KCLLL 422 (506)
T ss_pred HHHhh
Confidence 99973
No 278
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.9e-27 Score=190.35 Aligned_cols=123 Identities=16% Similarity=0.077 Sum_probs=89.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---eeeeeeeccc--CCC
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---ASDLISRATT--SPW 74 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---~i~~~~q~~~--~~~ 74 (127)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|. |++.++ .++|++|+.. ...
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~ 390 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA 390 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCc
Confidence 479999999999988999999999999999999999999999999999995 334442 4899999742 223
Q ss_pred CcchHHHHHHHHhhh----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 75 PGTTLNLLKEIIKIQ----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 75 ~~t~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++.+++....... ....+..+.......+++..+|||||||||+||++|++
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 391 DESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred cchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 346666653211111 12233333332223345556699999999999999874
No 279
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.1e-27 Score=161.87 Aligned_cols=121 Identities=14% Similarity=0.045 Sum_probs=94.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------------
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK------------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~------------------- 61 (127)
.|+++++++.||..++|.|++|+.+.||.+.++||+|||||||+|.+.=. |+..+.
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999753 222221
Q ss_pred -eeeeeeecccCCCCcchHHHHHHHHh-------hhh----HHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 -ASDLISRATTSPWPGTTLNLLKEIIK-------IQT----VCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 -~i~~~~q~~~~~~~~t~~~~l~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+|++||+...++.+||.||+..... ... .+.++++... ...++.+-+|||||+|||+|||||.+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralmm 158 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHhc
Confidence 28999999999999999999876432 111 2223333322 34566676799999999999999863
No 280
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=2.5e-27 Score=169.96 Aligned_cols=121 Identities=13% Similarity=-0.064 Sum_probs=85.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeee-------eeeeecccCCCCcchH
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKAS-------DLISRATTSPWPGTTL 79 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i-------~~~~q~~~~~~~~t~~ 79 (127)
+.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|..++..+.+ ..........+..|+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~ 102 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGR 102 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHH
Confidence 778999999999999999999999999999999999999999999999643332221 1111222334467999
Q ss_pred HHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 80 NLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 80 ~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+.+.... ..++.+.++.... ...++...+||||||||++|||||++
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 103 ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATAL 159 (224)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 998765321 1112222222221 22345556799999999999999974
No 281
>KOG0055|consensus
Probab=99.94 E-value=3e-27 Score=197.14 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=94.9
Q ss_pred eeeeceeEEEeCCC---CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee--------------e
Q psy18211 6 ALEGREVILVARPE---PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA--------------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~---~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~--------------i 63 (127)
.++++||+|+|+.+ ++|+++||+|++|+.++|+|||||||||++++|.+.. ++.+++ +
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence 58999999999864 5999999999999999999999999999999999943 333432 8
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh--------------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI--------------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+|+|+|. .|..|++||+.+..++.+.+.+.+..... ...-..+.+||||||||++|||||++
T Consensus 430 glV~QePv-lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~ 506 (1228)
T KOG0055|consen 430 GLVSQEPV-LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVR 506 (1228)
T ss_pred Ceeeechh-hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHh
Confidence 99999984 56789999999987655444444322111 11123345699999999999999985
No 282
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-27 Score=186.86 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=87.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
++|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|. |++.++ .++
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 3799999999764 489999999999999999999999999999999994 222221 278
Q ss_pred eeeecc---cCCCCcchHHHHHHHHh--------------h-hh----HHHHHHHHhHhhhcccCCCCCCcccchhhhhH
Q psy18211 65 LISRAT---TSPWPGTTLNLLKEIIK--------------I-QT----VCKVKELGKKILLSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 65 ~~~q~~---~~~~~~t~~~~l~~~~~--------------~-~~----~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia 122 (127)
|++|++ ..++..|+.+|+.+... . .. .+.++.+.......++.+.+|||||||||+||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH
Confidence 999973 34456799999875311 0 11 11222222221223555667999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||++
T Consensus 422 ral~~ 426 (510)
T PRK09700 422 KWLCC 426 (510)
T ss_pred HHHhc
Confidence 99974
No 283
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=4.4e-27 Score=191.42 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=90.5
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|. |++.+++ ++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 4899999999963 5699999999999999999999999999999999995 3344432 78
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHH----HHHhHh-------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVK----ELGKKI-------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~----~~~~~~-------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++. .++.|++||+.+......++.+. ...... .+ ....+.+||||||||++|||||++
T Consensus 535 ~v~q~~~-lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~ 610 (694)
T TIGR01846 535 VVLQENV-LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG 610 (694)
T ss_pred EEccCCe-ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999965 45679999998754322222222 211111 01 123355799999999999999974
No 284
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=6e-27 Score=187.11 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=90.1
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~ 64 (127)
.++++|++++|++ +++|+++||++++|++++|+||||||||||+++|+|.. ++.++ .++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4899999999964 57999999999999999999999999999999999943 33332 279
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh--------------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI--------------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.. ++.|++||+.++.....++.+....... ......+.+||||||||++|||||++
T Consensus 393 ~v~q~~~l-f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~ 468 (569)
T PRK10789 393 VVSQTPFL-FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL 468 (569)
T ss_pred EEccCCee-ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999754 4679999998764322222222211110 01123345699999999999999975
No 285
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=1.6e-26 Score=164.87 Aligned_cols=119 Identities=11% Similarity=0.040 Sum_probs=86.2
Q ss_pred eeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee------------------eee
Q psy18211 8 EGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI------------------KAS 63 (127)
Q Consensus 8 ~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~------------------~~i 63 (127)
.+.|+.++|+ ++++|+++||+|++||+++|+||||||||||+++|+|. |++.+ ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999997 56799999999999999999999999999999999994 22111 237
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..+ +.++.||+.+.... ...+.++.+.....+ .+.....||+|||||++|||||++
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 8999987654 67999999764321 111222222111101 123445699999999999999974
No 286
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=4.3e-27 Score=185.34 Aligned_cols=122 Identities=9% Similarity=0.018 Sum_probs=89.4
Q ss_pred eeeeceeEEEe---CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----e--eee---------------
Q psy18211 6 ALEGREVILVA---RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----C--KIK--------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~---~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----~--~~~--------------- 61 (127)
+|+++|+++.| +++.+++|+||+|++||+++|+||||||||||+|+|+|... + .++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 79999999999 35679999999999999999999999999999999999532 2 221
Q ss_pred eeeeeeeccc---CCCCcchHHHHHHHHh-----------hhhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhHh
Q psy18211 62 ASDLISRATT---SPWPGTTLNLLKEIIK-----------IQTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 62 ~i~~~~q~~~---~~~~~t~~~~l~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia~ 123 (127)
.++|++|+.. .++..|+.+|+.+... ......+.++..... ..++...+|||||||||+|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 2789999852 4556799998865321 001122333322222 234555679999999999999
Q ss_pred hhhC
Q psy18211 124 SLIK 127 (127)
Q Consensus 124 aL~~ 127 (127)
||++
T Consensus 417 al~~ 420 (500)
T TIGR02633 417 MLLT 420 (500)
T ss_pred HHhh
Confidence 9973
No 287
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=7.7e-27 Score=168.51 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=78.7
Q ss_pred EeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eeeeee-ecccCCCC
Q psy18211 15 VARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASDLIS-RATTSPWP 75 (127)
Q Consensus 15 ~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~~~~-q~~~~~~~ 75 (127)
.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|++ |.+..++.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 344567999999999999999999999999999999999953 22221 367887 44445556
Q ss_pred cchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|+.|++.+.... ...+.+..+.... ...++...+||+|||||++||+||++
T Consensus 110 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~ 170 (236)
T cd03267 110 LPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLH 170 (236)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 7999998754311 1111222222221 22344555699999999999999974
No 288
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=6.3e-28 Score=164.91 Aligned_cols=119 Identities=15% Similarity=0.063 Sum_probs=92.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee-------------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK-------------------ASDLI 66 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~-------------------~i~~~ 66 (127)
.++++++-+.-++..+|+++||++.+||.++|+||+|||||||+|+++-..+++.+ .++|+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 46788887777889999999999999999999999999999999999996544332 17888
Q ss_pred eecccCCCCcchHHHHHHHHhh--------hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI--------QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.|.+. .++.||.||+.++..- .....++++.......++...+||||||||++|+|-|
T Consensus 83 ~Q~pa-Lfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L 148 (223)
T COG4619 83 AQTPA-LFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL 148 (223)
T ss_pred HcCcc-ccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh
Confidence 88765 4677999999886531 1123344444444455666667999999999999976
No 289
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=6.1e-27 Score=202.46 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=90.8
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++||+++|++ +++|+|+||+|++||++||+||+|||||||+++|.|. |++.+++ ++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 4899999999953 5799999999999999999999999999999999994 3444443 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||++.. ++.|++||+.... ...++.+.+..... .++ ...+.+||||||||++|||||++
T Consensus 1314 iVpQdp~L-F~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232 1314 IIPQSPVL-FSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred EECCCCee-eCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999865 5679999997543 22222222221111 111 23345799999999999999985
No 290
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=187.37 Aligned_cols=121 Identities=15% Similarity=0.069 Sum_probs=83.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeee---eeeeeecccCCCCcc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKA---SDLISRATTSPWPGT 77 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~---i~~~~q~~~~~~~~t 77 (127)
||+++||+++|+++++|+|+||+|++||++||+||||||||||||+|+|... +.+.+ ++|++|.... ...+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CCCC
Confidence 5899999999999999999999999999999999999999999999999533 33322 6788885422 2234
Q ss_pred hHHHHHHHH-------------------------hh--------hhHHHHHHHHhHhh----hcccCCCCCCcccchhhh
Q psy18211 78 TLNLLKEII-------------------------KI--------QTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQ 120 (127)
Q Consensus 78 ~~~~l~~~~-------------------------~~--------~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ 120 (127)
+.+++.... .. ..+..+..+..... ..+++..+|||||||||+
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 433332100 00 00112222222221 234555679999999999
Q ss_pred hHhhhhC
Q psy18211 121 PQYSLIK 127 (127)
Q Consensus 121 ia~aL~~ 127 (127)
||+||+.
T Consensus 160 LA~aL~~ 166 (638)
T PRK10636 160 LAQALIC 166 (638)
T ss_pred HHHHHcc
Confidence 9999974
No 291
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=9.2e-27 Score=201.70 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++||+++|++ ..+|+|+||+|++||++||+|++|||||||+++|.|. |.+.+++ ++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 4999999999965 4599999999999999999999999999999999995 4444433 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhh-----------hc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKIL-----------LS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++.. |+.|+++|+.... ...++.+.+...... ++ ...+.+||||||||++|||||++
T Consensus 1388 iVpQdp~L-F~gTIreNIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1388 MIPQDPVL-FDGTVRQNVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred EECCCCcc-ccccHHHHhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 99999865 5779999997532 222222322222110 11 22345799999999999999985
No 292
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=9.6e-27 Score=202.01 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=90.9
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++||+++|.+ +++|+|+||+|++||++||+|++|||||||+++|.|. |++.+++ ++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 4899999999964 4799999999999999999999999999999999994 3444433 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||++.. +..|+++|+..... ..++.+.+..... .++ ...+.+||||||||++|||||++
T Consensus 1317 iVpQdp~L-F~GTIreNLd~~~~-~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130 1317 IIPQAPVL-FSGTVRFNLDPFNE-HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred EECCCCcc-ccccHHHHhCcCCC-CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999865 57799999976432 2222222221111 111 22345699999999999999985
No 293
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=3.1e-26 Score=169.43 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=86.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee-eeeeeecccCCCCcch
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA-SDLISRATTSPWPGTT 78 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~-i~~~~q~~~~~~~~t~ 78 (127)
+.|+++|+++. ++++|+|+||+|++||+++|+|+||||||||+++|+|.. ++.+++ ++|++|++..+ +.++
T Consensus 38 ~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~-~~tv 114 (282)
T cd03291 38 NNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM-PGTI 114 (282)
T ss_pred CeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc-ccCH
Confidence 46999999985 567999999999999999999999999999999999953 334433 89999987554 4599
Q ss_pred HHHHHHHHhh---hhHHHHHHHHhHhh----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEIIKI---QTVCKVKELGKKIL----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.||+.+.... .....++....... ..+....+||+|||||++|||||+.
T Consensus 115 ~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 115 KENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred HHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9998764211 11111221111110 1112235699999999999999974
No 294
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=1.6e-26 Score=187.30 Aligned_cols=121 Identities=14% Similarity=0.052 Sum_probs=89.2
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---eeeeeeeecccCCCCc
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---KASDLISRATTSPWPG 76 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---~~i~~~~q~~~~~~~~ 76 (127)
+++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|.. ++.+ ..++|++|++..+ +.
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~-~~ 529 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMT-LG 529 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCC-Cc
Confidence 589999999995 567999999999999999999999999999999999953 2222 2489999998654 44
Q ss_pred chHHHHHHHHh-------hhhHHH----HHHHHhHhhhccc--------CCCCCCcccchhhhhHhhhhC
Q psy18211 77 TTLNLLKEIIK-------IQTVCK----VKELGKKILLSQV--------KGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 77 t~~~~l~~~~~-------~~~~~~----~~~~~~~~~~~~~--------~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++||+.++.. ...++. ++.+.......+. ...+||||||||++|||||++
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~ 599 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYH 599 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHc
Confidence 99999986421 111222 2222222111111 124699999999999999974
No 295
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=3.3e-26 Score=184.87 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=60.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeee---eeeeeecccCCCCc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKA---SDLISRATTSPWPG 76 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~---i~~~~q~~~~~~~~ 76 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.+.+ +++++|.+......
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEG 81 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCC
Confidence 47999999999999999999999999999999999999999999999999643 23322 46666654322223
Q ss_pred chHHH
Q psy18211 77 TTLNL 81 (127)
Q Consensus 77 t~~~~ 81 (127)
++.++
T Consensus 82 ~v~~~ 86 (635)
T PRK11147 82 TVYDF 86 (635)
T ss_pred CHHHH
Confidence 44443
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=2.6e-26 Score=167.63 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=87.8
Q ss_pred CCeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------e
Q psy18211 4 WPALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------A 62 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~ 62 (127)
.+.|+++|++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|. |++.++ .
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 347999999999986 5799999999999999999999999999999999995 233321 2
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++.. ++.|+.+|+...... .....++...... ...+....+||+|||||++|||||++
T Consensus 97 i~~v~q~~~l-~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 97 LSIILQDPIL-FSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred EEEECCCCcc-cccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 7899998754 456888887542110 1111111111110 01123445699999999999999974
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.94 E-value=1.1e-26 Score=182.62 Aligned_cols=123 Identities=14% Similarity=0.114 Sum_probs=87.8
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc------eee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL------CKI---------------KAS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~------~~~---------------~~i 63 (127)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+ ..+
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 57999999999998889999999999999999999999999999999999522 111 127
Q ss_pred eeeeecccCCCC--cchHHHHHHHHh----------hhhHHHHHH----HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWP--GTTLNLLKEIIK----------IQTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~--~t~~~~l~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++...+. .++.+++..... ....+.+++ +.......++++.+|||||||||+||+||+.
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 899987644332 356666543210 111122233 3322113455666799999999999999974
No 298
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=178.23 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=98.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
+.+++++++|+|++..+.++|||+|++||+.+|+|.||||||||+++|.|. |++.++ +||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 479999999999999999999999999999999999999999999999994 333333 399
Q ss_pred eeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHh----HhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGK----KILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++.|++...+.+||.||+.+.... ..++.++++.. ..+....+ ..||-||||||.|-+||.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-~dLsVG~qQRVEIlKaLyr 157 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-ADLSVGEQQRVEILKALYR 157 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-ecCCcchhHHHHHHHHHhc
Confidence 999999999999999999876531 22333444333 33333444 4599999999999999864
No 299
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=3.6e-26 Score=199.96 Aligned_cols=122 Identities=16% Similarity=0.107 Sum_probs=94.9
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-------------eee
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-------------~i~ 64 (127)
.+|+++|++|.|++ +.+++|+||+|++||++||+||||||||||+|+|+|. |++.++ .+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 47999999999985 5799999999999999999999999999999999994 333332 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhh------hhHHHH----HHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI------QTVCKV----KELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~----~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||.+.....+|++|++.+.... ..++.+ +.++.. ...++...+||||||||++||+||+.
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999998877788999999875321 112222 223322 23455556799999999999999974
No 300
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=171.47 Aligned_cols=120 Identities=13% Similarity=0.055 Sum_probs=96.2
Q ss_pred eeeeceeEEEeCCC------------------------CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce---
Q psy18211 6 ALEGREVILVARPE------------------------PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC--- 58 (127)
Q Consensus 6 ~l~~~~l~~~~~~~------------------------~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~--- 58 (127)
.++++|+++-||.+ .-++|+||+|+.||+.+|+|-+|||||||+|++++..++
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 68999999999853 357899999999999999999999999999999996443
Q ss_pred --eeee------------------eeeeeecccCCCCcchHHHHHHHHh------hhhHH----HHHHHHhHhhhcccCC
Q psy18211 59 --KIKA------------------SDLISRATTSPWPGTTLNLLKEIIK------IQTVC----KVKELGKKILLSQVKG 108 (127)
Q Consensus 59 --~~~~------------------i~~~~q~~~~~~~~t~~~~l~~~~~------~~~~~----~~~~~~~~~~~~~~~~ 108 (127)
.+++ ++++||.....+..||.||+.++.. ...++ .++..+.. .+.++++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhcCc
Confidence 3322 8999999999999999999998762 11122 22222322 4667888
Q ss_pred CCCCcccchhhhhHhhhh
Q psy18211 109 KNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 109 ~~LSgGekqrv~ia~aL~ 126 (127)
++|||||||||.|||||.
T Consensus 163 ~eLSGGMqQRVGLARAla 180 (386)
T COG4175 163 NELSGGMQQRVGLARALA 180 (386)
T ss_pred ccccchHHHHHHHHHHHc
Confidence 899999999999999985
No 301
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=1.7e-26 Score=183.71 Aligned_cols=121 Identities=17% Similarity=0.064 Sum_probs=84.7
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------eeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i~~ 65 (127)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5899999999975 56999999999999999999999999999999999953 23332 2889
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhc--cc--CCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLS--QV--KGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++. .++.|+++|-.........+.++.+....... +. .+.+||||||||++|||||++
T Consensus 402 v~q~~~-lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~ 466 (547)
T PRK10522 402 VFTDFH-LFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE 466 (547)
T ss_pred EecChh-HHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc
Confidence 999864 34567777611000111122233322211111 11 145799999999999999975
No 302
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=2.3e-26 Score=167.16 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=84.9
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----ceeee--------------eeeeeeec
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----LCKIK--------------ASDLISRA 69 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----~~~~~--------------~i~~~~q~ 69 (127)
+++||++. .+|+++||+|++||+++|+|+||||||||+++|+|.. ++.++ .++|++|+
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 57888885 3899999999999999999999999999999999952 22221 27899998
Q ss_pred ccCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 70 TTSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+...+..|+.+|+.+.... ...+.+.++.... ...++...+||+|||||++||+||+
T Consensus 78 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred CccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 7777778999998865211 1112222222221 2335555679999999999999997
No 303
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.93 E-value=3.1e-26 Score=159.30 Aligned_cols=114 Identities=16% Similarity=0.069 Sum_probs=77.4
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCCcchHHHHHHHHh
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIK 87 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 87 (127)
+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|..++.-+.+-+-.++.....+...+..+.+..
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~- 79 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP- 79 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH-
Confidence 4789999998888999999999999999999999999999999999976554443332211111101111111121111
Q ss_pred hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 88 IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++.+... ...++...+||+|||||++|||||++
T Consensus 80 ----q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~ 114 (180)
T cd03214 80 ----QALELLGLA-HLADRPFNELSGGERQRVLLARALAQ 114 (180)
T ss_pred ----HHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 134444433 23345556699999999999999974
No 304
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=7.5e-27 Score=167.20 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=84.5
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee--------------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK--------------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~--------------------~i~ 64 (127)
++|+++|++.+|+++++|+|+|++|++||..+|+||||||||||+++++|...+..+ .||
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 479999999999999999999999999999999999999999999999995332211 155
Q ss_pred eeeecccC--CCCcchHHHHHHHH------h--h---hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTS--PWPGTTLNLLKEII------K--I---QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~--~~~~t~~~~l~~~~------~--~---~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++...-.. ....+++|.+.... . . ........+...+ .+.+++..+||-||||||.|||||+.
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~ 188 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVK 188 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhc
Confidence 55432211 12234555544322 0 0 1112222222222 34566666699999999999999974
No 305
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=2.7e-26 Score=198.71 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|.|. |++.+++ ++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 4999999999965 4799999999999999999999999999999999994 4444443 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||++.. ++.|+++|+.... ...++.+.+..... .++ ...+.+||||||||++|||||++
T Consensus 1364 iVpQdp~L-F~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957 1364 IIPQDPVL-FSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred EECCCCcc-cCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999865 5679999997322 12222222221111 111 23345699999999999999985
No 306
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-25 Score=176.74 Aligned_cols=124 Identities=17% Similarity=0.044 Sum_probs=85.8
Q ss_pred CCeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee-----eeee-eeeeecccCCC
Q psy18211 4 WPALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK-----IKAS-DLISRATTSPW 74 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~-----~~~i-~~~~q~~~~~~ 74 (127)
.++++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|...+. +++. .++.+......
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNG 98 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCC
Confidence 457889999988876 46999999999999999999999999999999999964333 3221 12233333344
Q ss_pred CcchHHHHHHHHh--h----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 75 PGTTLNLLKEIIK--I----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 75 ~~t~~~~l~~~~~--~----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..|+.|++.+... . ...+.+..+.... ...++...+||||||||++|||||+.
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 5699999876321 1 1111222222211 23345556699999999999999974
No 307
>KOG0055|consensus
Probab=99.93 E-value=4.4e-26 Score=190.22 Aligned_cols=121 Identities=20% Similarity=0.210 Sum_probs=93.2
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------e
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i 63 (127)
-|+++||+|+|+. .++|+|+||+|++|+.+|||||+||||||.+.+|-+. |.+.+++ +
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 4899999999974 5699999999999999999999999999999999994 3344432 8
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|.|+|.. |..|++||+.++......+.+.+..... ..+ -..+.+||||||||++|||||++
T Consensus 1067 ~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999865 6779999999984332333332221111 111 23456899999999999999986
No 308
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=9.1e-26 Score=149.92 Aligned_cols=103 Identities=22% Similarity=0.144 Sum_probs=75.5
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee--------------eeeeeeecccCCCCcchHHHH
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK--------------ASDLISRATTSPWPGTTLNLL 82 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~--------------~i~~~~q~~~~~~~~t~~~~l 82 (127)
|+|+||+|++||+++|+|+||||||||+++|+|...+ .++ .++|++|+.......++.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999995432 221 288999997777777898881
Q ss_pred HHHHhhhhHHHHHHHHhHhhhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 83 KEIIKIQTVCKVKELGKKILLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
......+.++.+....... +....+||+|||||++||+||++
T Consensus 81 ---~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~ 125 (137)
T PF00005_consen 81 ---SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLK 125 (137)
T ss_dssp ---HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHT
T ss_pred ---ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHc
Confidence 1122334444444332111 22226699999999999999974
No 309
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=158.63 Aligned_cols=121 Identities=12% Similarity=0.061 Sum_probs=91.4
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee------------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA------------------SDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~------------------i~~~~ 67 (127)
+++.+|++..-++..+|.++||++.+||.+.|.||||||||||||+|+|...+.-+. .-|+.
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 688999999999999999999999999999999999999999999999964433322 22344
Q ss_pred ecccCCCCcchHHHHHHHHhhh---hHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 68 RATTSPWPGTTLNLLKEIIKIQ---TVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..+.....+|+.||+.+..... ....+.+....+ ...+.+..+||-|||+||+|||-++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~l 146 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWL 146 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHc
Confidence 4445556779999999876421 122333333222 3456666779999999999999765
No 310
>PLN03211 ABC transporter G-25; Provisional
Probab=99.93 E-value=9e-26 Score=182.84 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=89.2
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----e--eee----------eeeeeeecc
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----C--KIK----------ASDLISRAT 70 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~--~~~----------~i~~~~q~~ 70 (127)
..+|+++.|+++++|+|+|+++++||+++|+||||||||||+++|+|... + .++ .++|++|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 45678889988999999999999999999999999999999999999532 2 222 278999998
Q ss_pred cCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHhhhc--------ccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKILLS--------QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~~~~--------~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
......|++|++.+.... ...+.++++.....+. +.....||||||||+.||++|++
T Consensus 150 ~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~ 223 (659)
T PLN03211 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLI 223 (659)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHh
Confidence 777778999999875311 1112223322222221 22345699999999999999974
No 311
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=1.1e-25 Score=183.49 Aligned_cols=121 Identities=11% Similarity=-0.020 Sum_probs=85.5
Q ss_pred CeeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCCCC
Q psy18211 5 PALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~~~ 75 (127)
++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|++|+... .
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~--~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVD--G 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccc--c
Confidence 57999999999964 56999999999999999999999999999999999953 33322 48999997532 2
Q ss_pred cchHHHHHHHH----hhhhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEII----KIQTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++.++..... .....+ .+..+.......++.+.+|||||||||+||+||++
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 33444322211 111122 23333332123345566799999999999999874
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=1.1e-25 Score=197.01 Aligned_cols=123 Identities=7% Similarity=0.095 Sum_probs=94.7
Q ss_pred CeeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------------eee
Q psy18211 5 PALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-------------~i~ 64 (127)
+.|+++|+++.|+ ++.+++|+||++++||+++|+||||||||||+++|+|.. ++.++ .++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 3699999999995 578999999999999999999999999999999999953 22222 278
Q ss_pred eeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++.....+|++|++.+.... ..++.++++.... ...++...+|||||||||+||+||+.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999998777788999999875421 1122233332222 23355556799999999999999974
No 313
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.93 E-value=5.8e-26 Score=196.31 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=90.6
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIKA--------------SDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~~--------------i~~ 65 (127)
.|+++||+++|+. +++|+|+||+|++||++||+|++|||||||+++|+|. |++.+++ ++|
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~ 1296 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGV 1296 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEE
Confidence 5999999999964 6799999999999999999999999999999999995 4444432 899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhh-----------hc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKIL-----------LS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++.. |+.|+++|+.... ...++.+.+...... +. ...+.+||||||||++|||||++
T Consensus 1297 IpQdp~L-F~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271 1297 IPQKVFI-FSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred EeCCCcc-CccCHHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence 9999865 5679999996432 112222222222111 11 22345699999999999999985
No 314
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.93 E-value=6.8e-26 Score=155.48 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=70.1
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCCcchHHHHHHHH
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEII 86 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~ 86 (127)
|+++|+++.|+++++++++||++++||+++|+||||||||||+++|+|..++..+.+-+-.++.. ..+..+.
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~---~~~~~~~----- 72 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS---FASPRDA----- 72 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC---cCCHHHH-----
Confidence 57899999999889999999999999999999999999999999999976554443322211110 0011110
Q ss_pred hhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 87 KIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
... ... . . .+||+|||||++|||||++
T Consensus 73 -------~~~-~i~--~---~-~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 73 -------RRA-GIA--M---V-YQLSVGERQMVEIARALAR 99 (163)
T ss_pred -------Hhc-CeE--E---E-EecCHHHHHHHHHHHHHhc
Confidence 000 000 0 1 1299999999999999974
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.93 E-value=7.4e-26 Score=180.44 Aligned_cols=120 Identities=16% Similarity=0.090 Sum_probs=84.0
Q ss_pred eeeeceeEEEeCCC-----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee-------------
Q psy18211 6 ALEGREVILVARPE-----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA------------- 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~~-----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~------------- 62 (127)
.|+++|++++|+++ ++|+|+||++++||+++|+||||||||||+++|+|.. ++.+++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 48999999999752 5999999999999999999999999999999999943 333322
Q ss_pred -eeeeeecccCCCCcchHHHHHHHH-hhhhHHHHHHHHhHhhhc------ccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 -SDLISRATTSPWPGTTLNLLKEII-KIQTVCKVKELGKKILLS------QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 -i~~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++.. ++.|+++|..... .....+.++.+....... +.. .+||||||||++|||||++
T Consensus 417 ~i~~v~q~~~l-f~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 417 LFSAIFADFHL-FDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-TALSTGQQKRLALICAWLE 487 (555)
T ss_pred hCcEEccChhh-hhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCc-ccCCHHHHHHHHHHHHHHc
Confidence 7888888643 4567777742111 111122222222211111 222 4599999999999999974
No 316
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=1e-25 Score=194.94 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=90.8
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee-------eeeeeeeecccCCCC
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI-------KASDLISRATTSPWP 75 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~-------~~i~~~~q~~~~~~~ 75 (127)
.++++|++++|+. +++|+|+||+|++||+++|+||+|||||||+++|+|..++.. +.++|++|++.. ++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~L-f~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWI-FN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccc-cc
Confidence 4899999999974 579999999999999999999999999999999999643322 349999999765 46
Q ss_pred cchHHHHHHHHhhhh---HHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKIQT---VCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|++||+.++.+... .+.++......++ ....+.+||||||||++|||||.+
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~ 757 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence 799999998643211 1222222111111 122345699999999999999974
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=9.9e-26 Score=177.77 Aligned_cols=118 Identities=9% Similarity=0.044 Sum_probs=85.9
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
++++++|+++ .+++++||+|++||+++|+||||||||||+|+|+|. |++.++ .++
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 4689999985 379999999999999999999999999999999994 233221 279
Q ss_pred eeeecc---cCCCCcchHHHHHHHHh------------hhhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhHhhh
Q psy18211 65 LISRAT---TSPWPGTTLNLLKEIIK------------IQTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 65 ~~~q~~---~~~~~~t~~~~l~~~~~------------~~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia~aL 125 (127)
|++|++ ...+..|+.+|+.+... ....+.++++..... ..++...+|||||||||+||+||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999986 34456799999875321 011122333322222 23555667999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 411 ~~ 412 (501)
T PRK10762 411 MT 412 (501)
T ss_pred hh
Confidence 73
No 318
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=177.61 Aligned_cols=123 Identities=17% Similarity=0.058 Sum_probs=95.7
Q ss_pred CeeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---eeeeeeecccCC-C
Q psy18211 5 PALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---ASDLISRATTSP-W 74 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---~i~~~~q~~~~~-~ 74 (127)
++++++|+++.|++ +.+++++||.|.+|++|||+||||+|||||||+|+|.. .+..+ .+||+.|+.... .
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~ 399 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDP 399 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCc
Confidence 47999999999966 68999999999999999999999999999999997732 22322 389999987443 4
Q ss_pred CcchHHHHHHHHh----hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 75 PGTTLNLLKEIIK----IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 75 ~~t~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..|+.|++..... ...+..+.++++......++...||||||.|+.||+.+++
T Consensus 400 ~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 400 DKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred cCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 4488898876553 2334455566655444455666699999999999998763
No 319
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.9e-25 Score=162.23 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=85.3
Q ss_pred CeeeeceeEEEeCC---------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCC
Q psy18211 5 PALEGREVILVARP---------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~ 75 (127)
++++++|+++.|.. ..+++||||+|++||++||+|+||||||||-|+|.|..+++.+.|-|-.++....
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~-- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL-- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc--
Confidence 48999999999953 3699999999999999999999999999999999998777766665543331111
Q ss_pred cchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 76 GTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 76 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+ .........+.++..+.......+.+.+|||||+||+.|||||+
T Consensus 81 -~-----~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALa 125 (268)
T COG4608 81 -S-----KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALA 125 (268)
T ss_pred -c-----hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHh
Confidence 1 11011122344445554445667888899999999999999986
No 320
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.9e-25 Score=193.96 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC------ceee-eeeeeeeecccCCCC
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD------LCKI-KASDLISRATTSPWP 75 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~------~~~~-~~i~~~~q~~~~~~~ 75 (127)
.++++|+++.|+. +++|+|+||+|++|++++|+||+|||||||+++|+|.. .+.+ +.++|++|++-. ++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~L-fn 692 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI-FN 692 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCcccc-CC
Confidence 5899999999974 57999999999999999999999999999999999953 3333 349999999765 46
Q ss_pred cchHHHHHHHHhhhh---HHHHHHHHhHhh----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKIQT---VCKVKELGKKIL----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|++||+.++.+... .+.++......+ .....+.+||||||||++|||||.+
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~ 757 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYS 757 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 799999998653211 122222211111 1123345699999999999999964
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.92 E-value=1.5e-25 Score=151.02 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=67.8
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------eeeeeecccCCCCcch
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA--------SDLISRATTSPWPGTT 78 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~--------i~~~~q~~~~~~~~t~ 78 (127)
++++|++++|++.++++++||++++||+++|+|+||||||||+++|+|..++..+. ++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~---------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ---------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc----------
Confidence 47899999998888999999999999999999999999999999999965433322 344433
Q ss_pred HHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+||+||++|||||++
T Consensus 71 --------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 71 --------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred --------------------------------CCHHHHHHHHHHHHHhc
Confidence 99999999999999974
No 322
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=2.6e-25 Score=160.00 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=77.2
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeeee---------eeeeeecccCCCCcchHHHHHHHHh
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIKA---------SDLISRATTSPWPGTTLNLLKEIIK 87 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~~---------i~~~~q~~~~~~~~t~~~~l~~~~~ 87 (127)
|+++||+|++||+++|+||||||||||+++|+|.. ++.+++ .+|++|++..+...|+.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999953 333322 4789998876666899999876421
Q ss_pred ----h----hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 88 ----I----QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 88 ----~----~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
. ...+.+.++.... ...++...+||||||||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 131 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSI 131 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHc
Confidence 1 1112222322222 23345556799999999999999974
No 323
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=2.1e-25 Score=192.35 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=67.6
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee-e--------------e
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI-K--------------A 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~-~--------------~ 62 (127)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|. |++.+ + .
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 4899999999975 3699999999999999999999999999999999994 44444 2 1
Q ss_pred eeeeeecccCCCCcchHHHHHHH
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEI 85 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~ 85 (127)
++|++|++..+ +.|++||+.+.
T Consensus 462 Ig~V~Q~~~LF-~~TI~eNI~~g 483 (1466)
T PTZ00265 462 IGVVSQDPLLF-SNSIKNNIKYS 483 (1466)
T ss_pred ccEecccccch-hccHHHHHHhc
Confidence 89999997654 57999999874
No 324
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=4.7e-25 Score=170.77 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=90.4
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|.++++++.-. ++++++++||++.+||.+|||||+|||||||.|+|.|. |.+..++ +|
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 699999999765 36899999999999999999999999999999999993 4444432 99
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhh-HHHHHHH--HhHhhh--------c---ccCCCCCCcccchhhhhHhhhh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQT-VCKVKEL--GKKILL--------S---QVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~--~~~~~~--------~---~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|+||+.. .|+.|+.||+.-+.++.+ +..++.. ...+++ + -.-+..||||||||++|||||-
T Consensus 414 YLPQdVe-LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 414 YLPQDVE-LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred cCcccce-ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 9999965 478899999987653332 2233221 111111 1 1223569999999999999984
No 325
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.92 E-value=1.1e-24 Score=159.94 Aligned_cols=122 Identities=15% Similarity=-0.033 Sum_probs=86.6
Q ss_pred eeeeceeEEEeCC--------------------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee
Q psy18211 6 ALEGREVILVARP--------------------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~--------------------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~ 60 (127)
-++++|+++.|.. +++|+++||+|++||+++|+||||||||||+++|+|..+ +.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 5889999988843 248999999999999999999999999999999999643 333
Q ss_pred ee-eeeeeecccCCCCcchHHHHHHHHh--hh----hHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 KA-SDLISRATTSPWPGTTLNLLKEIIK--IQ----TVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ~~-i~~~~q~~~~~~~~t~~~~l~~~~~--~~----~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++ +++++|........|+.+|+.+... .. ....+..+.... ...+....+||+||+||++||+||++
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~ 160 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITV 160 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhh
Confidence 33 4566666555556799999875321 11 111112221111 23345556799999999999999974
No 326
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.92 E-value=8.5e-25 Score=177.06 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=92.2
Q ss_pred CeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee---------------
Q psy18211 5 PALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI--------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~--------------- 60 (127)
++|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|..+ +.+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 48999999999963 469999999999999999999999999999999999532 111
Q ss_pred ---eeeeeeeecccCCCCcchHHHHHHHHhh------hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 61 ---KASDLISRATTSPWPGTTLNLLKEIIKI------QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 61 ---~~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++|++|++..++..++.||+.+.... ..++ .++.+... ...+....+||+||+||++|||||++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2378999998766677999998764311 1111 22222222 23455566799999999999999974
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=4.7e-25 Score=160.34 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCceeeceeEee-----cCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--eeeeeeecccCCCCcchHHHHHHHH
Q psy18211 19 EPNIVSADLVLS-----SAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--ASDLISRATTSPWPGTTLNLLKEII 86 (127)
Q Consensus 19 ~~~l~~vs~~i~-----~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--~i~~~~q~~~~~~~~t~~~~l~~~~ 86 (127)
...+.++++++. +||+++|+||||||||||+++|+|.. ++.++ .++|++|+....+..|+.|++....
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 346677777775 79999999999999999999999953 33333 4899999887667789999986543
Q ss_pred hh--h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 87 KI--Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 87 ~~--~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.. . ..+.++.+... ...++...+|||||||||+||+||++
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~ 132 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSK 132 (246)
T ss_pred hhccccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 21 1 12233333332 23345556699999999999999974
No 328
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.92 E-value=1e-24 Score=171.22 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=88.7
Q ss_pred CeeeeceeEEEeCCC----CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-------eee--e----------
Q psy18211 5 PALEGREVILVARPE----PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-------CKI--K---------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~----~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-------~~~--~---------- 61 (127)
++|+++||++.|... .+++||||+|.+||++||+|.+||||||+.+.|.|..+ +.+ +
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999999643 59999999999999999999999999999999999421 222 1
Q ss_pred --------eeeeeeecccC-CCC-cchHHHHHHHHh-------hhhHHHHHH----HHhHhhhc-ccCCCCCCcccchhh
Q psy18211 62 --------ASDLISRATTS-PWP-GTTLNLLKEIIK-------IQTVCKVKE----LGKKILLS-QVKGKNMSKTEKKPL 119 (127)
Q Consensus 62 --------~i~~~~q~~~~-~~~-~t~~~~l~~~~~-------~~~~~~~~~----~~~~~~~~-~~~~~~LSgGekqrv 119 (127)
.++|+||++-. ++| +++.+.+..... ....+.+.+ ........ ++++.+|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 28999998754 334 567666654321 112222222 22222112 468889999999999
Q ss_pred hhHhhhh
Q psy18211 120 QPQYSLI 126 (127)
Q Consensus 120 ~ia~aL~ 126 (127)
.||+||+
T Consensus 164 ~iAmALa 170 (539)
T COG1123 164 MIAMALA 170 (539)
T ss_pred HHHHHHh
Confidence 9999996
No 329
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=9.4e-25 Score=156.97 Aligned_cols=107 Identities=18% Similarity=0.016 Sum_probs=75.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-------ee--------------eeeeeeeeccc--CCCCcc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-------KI--------------KASDLISRATT--SPWPGT 77 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-------~~--------------~~i~~~~q~~~--~~~~~t 77 (127)
+++|+||+|++||+++|+||||||||||+++|+|...+ .+ ..++|++|++. .....|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57999999999999999999999999999999995332 21 13789999874 333468
Q ss_pred hHHHHHHHHhh------hhHHHHHHHHhHhh------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKI------QTVCKVKELGKKIL------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~------~~~~~~~~~~~~~~------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.+++.+.... ...+.+.++..... ..++...+|||||||||+|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~ 142 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLL 142 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhc
Confidence 88887643311 11122333322222 2345556799999999999999974
No 330
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=6.4e-25 Score=179.14 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=57.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC---Cceeeeeeeeeeeccc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS---DLCKIKASDLISRATT 71 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~---~~~~~~~i~~~~q~~~ 71 (127)
+|+++|+++.|+++.+|+|+||+|++|+++|||||||||||||||+|+|. +.+.-+.+.|++|+..
T Consensus 177 ~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~ 245 (718)
T PLN03073 177 DIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV 245 (718)
T ss_pred eEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC
Confidence 69999999999988999999999999999999999999999999999985 2334455888888643
No 331
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.3e-25 Score=174.18 Aligned_cols=118 Identities=9% Similarity=-0.048 Sum_probs=84.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~~ 65 (127)
.++++|++.. .+++++||+|++||+++|+||||||||||+|+|+|. |++.++ .++|
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 5888888732 589999999999999999999999999999999995 333321 2678
Q ss_pred eeeccc---CCCCcchHHHHHHHHh-----------h-hhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhHhhhh
Q psy18211 66 ISRATT---SPWPGTTLNLLKEIIK-----------I-QTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 66 ~~q~~~---~~~~~t~~~~l~~~~~-----------~-~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++|++. ..+..|+.+|+.+... . ...+.+.++..... ..++...+|||||||||+||+||+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 999863 4556799999864311 0 11122233222222 235555679999999999999997
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 413 ~ 413 (501)
T PRK11288 413 E 413 (501)
T ss_pred c
Confidence 4
No 332
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=156.30 Aligned_cols=123 Identities=15% Similarity=0.004 Sum_probs=96.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee----------------ee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK----------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~----------------~i 63 (127)
+.|+++|++.+|++..+++++||++.+||.-+|||||||||||++.+|+|.-. ..+. +|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 47999999999999999999999999999999999999999999999999432 2222 27
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh--------------hhHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI--------------QTVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|--||.+..+...||+||+.+.... ..++++++++.... ..+..+..||-||||++.|++.|.
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 7788999888889999999876521 11234444443332 234455569999999999998775
Q ss_pred C
Q psy18211 127 K 127 (127)
Q Consensus 127 ~ 127 (127)
+
T Consensus 164 Q 164 (249)
T COG4674 164 Q 164 (249)
T ss_pred c
Confidence 3
No 333
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=1.1e-24 Score=188.87 Aligned_cols=121 Identities=13% Similarity=0.116 Sum_probs=90.6
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-eeeeeeecccCCCCcc
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK-ASDLISRATTSPWPGT 77 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~-~i~~~~q~~~~~~~~t 77 (127)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|.. ++.++ .++|++|++.. ++.|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l-~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI-QNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc-cCCc
Confidence 6899999999974 57999999999999999999999999999999999953 34443 48999999764 5679
Q ss_pred hHHHHHHHHhhh---hHHHHHHHH--hHhh--------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKIQ---TVCKVKELG--KKIL--------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~~---~~~~~~~~~--~~~~--------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||+.++.... .++.++... .... .....+.+||||||||++|||||.+
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 999998753211 111111111 1110 1123456799999999999999864
No 334
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.6e-24 Score=151.25 Aligned_cols=122 Identities=18% Similarity=0.128 Sum_probs=91.0
Q ss_pred CeeeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-------ceeee---------------
Q psy18211 5 PALEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-------LCKIK--------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-------~~~~~--------------- 61 (127)
.+|+++|++..-+++ ++|++||++|++||+.+|+||||||||||.++|+|.. ++.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 479999999999985 9999999999999999999999999999999999953 22222
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHH----HHhHhh-hcccCCCCCCcccchhhhhHhhhh
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKE----LGKKIL-LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~----~~~~~~-~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++.+.+|.|.-.+..++.+.+...... .....+++ +..... +.+.+...+|||||+|..|+.+++
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 267788888766666888888765422 11222222 222222 334445569999999999998775
No 335
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=4.6e-25 Score=148.73 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=94.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC--------Cceeee------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS--------DLCKIK------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~--------~~~~~~------------~i~~ 65 (127)
++.++|++.+.+++-+|-++||+|.+||++-|+||+|||||||+..+.|. |+..++ .+|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 68899999999999999999999999999999999999999999999993 222222 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhh----h-----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI----Q-----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++|++-.++..+|.+|+.+..+. . ....+++.... ...++.+.+||||||.||++-|+|+
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Ll 150 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALL 150 (213)
T ss_pred eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHH
Confidence 99999888888999999875521 1 12233333333 2334445569999999999999986
No 336
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=1.1e-24 Score=172.33 Aligned_cols=118 Identities=8% Similarity=0.056 Sum_probs=83.3
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|. |.+.++ +++
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 3789999984 269999999999999999999999999999999995 222221 378
Q ss_pred eeeecc---cCCCCcchHHHHHHHH---------hhhhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRAT---TSPWPGTTLNLLKEII---------KIQTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~---~~~~~~t~~~~l~~~~---------~~~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++ ..++..++.+++.... ....++.++++.... ...++++.+|||||||||+||+||+.
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 999874 2445568888875320 011112222322222 22355556799999999999999973
No 337
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.91 E-value=1.1e-24 Score=171.51 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=83.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
++|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|. |++.++ +++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 479999999974 5699999999999999999999999999999999995 233332 167
Q ss_pred eeeeccc---CCCCcchHHH-----HHHHHh-------hh----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 65 LISRATT---SPWPGTTLNL-----LKEIIK-------IQ----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 65 ~~~q~~~---~~~~~t~~~~-----l~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
|++|++. .+...++.+| +..... .. ..+.++.+.......++...+|||||||||+|||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 8888743 2334455544 322110 00 112222332221223556667999999999999998
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 407 ~~ 408 (491)
T PRK10982 407 LT 408 (491)
T ss_pred hc
Confidence 74
No 338
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.9e-25 Score=152.86 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=86.6
Q ss_pred CeeeeceeEEEeCC---------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeee--------
Q psy18211 5 PALEGREVILVARP---------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKA-------- 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~-------- 62 (127)
+.++++|++|.|.. ..+++.|||++++|+.++|||.||||||||.|+|+|..+ +.+++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 47999999999853 369999999999999999999999999999999999543 33332
Q ss_pred ------eeeeeecccCCCC--cchHHHHHHHHhh-------hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHh
Q psy18211 63 ------SDLISRATTSPWP--GTTLNLLKEIIKI-------QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 63 ------i~~~~q~~~~~~~--~t~~~~l~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~ 123 (127)
|.++||+++..++ ..+-..+..+... ...+.+.+..... +...-.+..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 7889998876432 2344444443321 1122222222222 3334556679999999999999
Q ss_pred hhh
Q psy18211 124 SLI 126 (127)
Q Consensus 124 aL~ 126 (127)
||+
T Consensus 163 ALI 165 (267)
T COG4167 163 ALI 165 (267)
T ss_pred HHh
Confidence 996
No 339
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.91 E-value=2e-24 Score=159.94 Aligned_cols=121 Identities=14% Similarity=0.088 Sum_probs=87.9
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----------eeee----------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----------CKIK---------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----------~~~~---------- 61 (127)
+|+++||+..|.. ..+++||||+|++||++||+|.+||||||+.+.|+|... +.++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 3789999999954 469999999999999999999999999999999999432 1111
Q ss_pred --------eeeeeeecccC--CCCcchHHHHHHHHhh--------hhHHHHHHHHhHh------hhcccCCCCCCcccch
Q psy18211 62 --------ASDLISRATTS--PWPGTTLNLLKEIIKI--------QTVCKVKELGKKI------LLSQVKGKNMSKTEKK 117 (127)
Q Consensus 62 --------~i~~~~q~~~~--~~~~t~~~~l~~~~~~--------~~~~~~~~~~~~~------~~~~~~~~~LSgGekq 117 (127)
.|+++||++-. .+.+++.+.+...... ...+.+.++.... ...+.++.+|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 28999998744 3344676665543321 0112222333222 2446778899999999
Q ss_pred hhhhHhhhh
Q psy18211 118 PLQPQYSLI 126 (127)
Q Consensus 118 rv~ia~aL~ 126 (127)
||+||.||+
T Consensus 161 RV~IAmala 169 (316)
T COG0444 161 RVMIAMALA 169 (316)
T ss_pred HHHHHHHHh
Confidence 999999986
No 340
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.5e-25 Score=160.08 Aligned_cols=112 Identities=18% Similarity=0.058 Sum_probs=86.3
Q ss_pred eEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------------eeeeeee
Q psy18211 12 VILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------------ASDLISR 68 (127)
Q Consensus 12 l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------------~i~~~~q 68 (127)
+.+++|+.. =+++|+.+...+++|.|++|||||||+|+|+|.. .+.++ .+||+||
T Consensus 6 ~~~~lG~~~--l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNFA--LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCceE--EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 344444432 3689998888999999999999999999999953 23222 2999999
Q ss_pred cccCCCCcchHHHHHHHHhh----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+...++.+||+.|+.+.... ..+..+.-+++.. +.++.+..|||||||||+|+|||+
T Consensus 84 DARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~h-LL~R~P~~LSGGEkQRVAIGRALL 144 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEH-LLDRYPGTLSGGEKQRVAIGRALL 144 (352)
T ss_pred ccccccceEEecchhhhhcccchHhHHHHHHHhCcHH-HHhhCCCccCcchhhHHHHHHHHh
Confidence 99999999999999987643 2344555566664 455555569999999999999997
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.91 E-value=1.8e-24 Score=154.20 Aligned_cols=107 Identities=12% Similarity=0.016 Sum_probs=71.8
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee------eeeee-eeeecccCCCCcchHHHHHHHHhh--hh
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK------IKASD-LISRATTSPWPGTTLNLLKEIIKI--QT 90 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~------~~~i~-~~~q~~~~~~~~t~~~~l~~~~~~--~~ 90 (127)
++|+|+||+|++||+++|+||||||||||+|+|+|...+. +++.. .+.+.+..++.+|+.||+.+.... ..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCC
Confidence 4789999999999999999999999999999999953322 22211 122333344456999999875421 11
Q ss_pred ----HHHHHH-HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 91 ----VCKVKE-LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 91 ----~~~~~~-~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+.+.+ .... ...++....||+|||||++||+||++
T Consensus 81 ~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~ 121 (213)
T PRK15177 81 GDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLL 121 (213)
T ss_pred HHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhc
Confidence 111111 1111 22344555699999999999999974
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=3.4e-24 Score=184.46 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=90.7
Q ss_pred eeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceeeee----------e
Q psy18211 6 ALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKIKA----------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~~~----------i 63 (127)
+++++||++.|+ ++++|+|||+++++||+++|+|||||||||||++|+|.. ++.+++ +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 578999999995 467999999999999999999999999999999999953 223322 7
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHh---hhcccCC----CCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKI---LLSQVKG----KNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~---~~~~~~~----~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++...+..|++|++.+.... ...+.++++.... ...++.. ..||||||||++||++|+.
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~ 918 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVA 918 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHc
Confidence 8999988777788999999875421 1112233322222 1222222 2599999999999999974
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=1.4e-24 Score=150.96 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=64.6
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eeee--eeeeeecccCCCCcchHHHH
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIKA--SDLISRATTSPWPGTTLNLL 82 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~~--i~~~~q~~~~~~~~t~~~~l 82 (127)
.|++++|+++.+++++ |++++||+++|+||||||||||+|+|+|...+ .+++ ++|++|+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~----------- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID----------- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC-----------
Confidence 6899999999999985 99999999999999999999999999996433 3332 455544321
Q ss_pred HHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 83 KEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+|||||++|||||+.
T Consensus 72 ----------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 72 ----------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred ----------------------------CCHHHHHHHHHHHHHhc
Confidence 99999999999999974
No 344
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.1e-24 Score=146.62 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=87.8
Q ss_pred eeeeceeEEEeC-----C--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee------------
Q psy18211 6 ALEGREVILVAR-----P--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------------ 61 (127)
Q Consensus 6 ~l~~~~l~~~~~-----~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------------ 61 (127)
.|.++|++|+|- + -++++++||+++.||++++-||+|+|||||||++.+.. ++.+.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 689999999983 2 47999999999999999999999999999999999942 33222
Q ss_pred ----------eeeeeeecccCCCCcchHHHHHHHHh------h----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhh
Q psy18211 62 ----------ASDLISRATTSPWPGTTLNLLKEIIK------I----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 62 ----------~i~~~~q~~~~~~~~t~~~~l~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~i 121 (127)
.+||++|.-..-+..+..|.+..+.. + .....+.++.....++.-.+.++||||||||-|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 17787775444444455565555442 1 122334444444456666667799999999999
Q ss_pred Hhhhh
Q psy18211 122 QYSLI 126 (127)
Q Consensus 122 a~aL~ 126 (127)
||.++
T Consensus 164 aRgfi 168 (235)
T COG4778 164 ARGFI 168 (235)
T ss_pred hhhhh
Confidence 99875
No 345
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.90 E-value=1.4e-23 Score=169.23 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=81.3
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eeeee-----------eeeeeecccCCCCcc
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKIKA-----------SDLISRATTSPWPGT 77 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~~~-----------i~~~~q~~~~~~~~t 77 (127)
+++++|+|+|+++++||+++|+|||||||||||++|+|... +.+++ ++|++|++...+.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35789999999999999999999999999999999999421 22222 699999988777889
Q ss_pred hHHHHHHHHhh---------hhHHHHHHHHhHh----hhcccCC-----CCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKI---------QTVCKVKELGKKI----LLSQVKG-----KNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~---------~~~~~~~~~~~~~----~~~~~~~-----~~LSgGekqrv~ia~aL~~ 127 (127)
|+||+.+.... ...+.++++.... .....++ ..||||||||+.||++|+.
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~ 183 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT 183 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc
Confidence 99999875421 1112233322222 1222332 2599999999999999973
No 346
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.90 E-value=1.2e-23 Score=153.80 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=75.6
Q ss_pred ceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------------------------
Q psy18211 10 REVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA-------------------------- 62 (127)
Q Consensus 10 ~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~-------------------------- 62 (127)
.|++++|+++ .+++|+|+ +++||+++|+||||||||||+++|+|...+..+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4799999875 59999995 9999999999999999999999999954321111
Q ss_pred ------eeeeeecccCCCCcchHHHHHHHHhh-hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 ------SDLISRATTSPWPGTTLNLLKEIIKI-QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 ------i~~~~q~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|..... +.++.+++...... ..++...++.... ...++...+||+|||||++|||||++
T Consensus 83 ~~~~~~i~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 83 LEGDVKVIVKPQYVDLI-PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhcccceeeecchhccC-chHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 23444543322 23445554432211 1112222222222 22344555699999999999999873
No 347
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=4e-23 Score=148.00 Aligned_cols=121 Identities=12% Similarity=-0.086 Sum_probs=86.2
Q ss_pred CeeeeceeEEEeC------------------------CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee
Q psy18211 5 PALEGREVILVAR------------------------PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~------------------------~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~ 60 (127)
++|+++||++.|. ..++|+||||++++||.+||||+||||||||+|+|+|..+|+.
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 4678888888772 1369999999999999999999999999999999999654433
Q ss_pred ee------eeeeee-cccCCCCcchHHHHHHHHh------hhhHHH---HHHHHhHhhhcccCCCCCCcccchhhhhHhh
Q psy18211 61 KA------SDLISR-ATTSPWPGTTLNLLKEIIK------IQTVCK---VKELGKKILLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 61 ~~------i~~~~q-~~~~~~~~t~~~~l~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~LSgGekqrv~ia~a 124 (127)
+. ++.+.. ...+.++.|.+||+.+... ...++. +.++..--+..+.+.+++|-||+.|+++|-|
T Consensus 82 G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia 161 (249)
T COG1134 82 GKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVA 161 (249)
T ss_pred ceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhh
Confidence 22 332222 2234567799999987541 122222 2233333345677777799999999999987
Q ss_pred h
Q psy18211 125 L 125 (127)
Q Consensus 125 L 125 (127)
.
T Consensus 162 ~ 162 (249)
T COG1134 162 T 162 (249)
T ss_pred h
Confidence 5
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=3.9e-23 Score=178.95 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=78.5
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-eeeeeeecccCCCCcchHHHHHHHHhhh---
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-ASDLISRATTSPWPGTTLNLLKEIIKIQ--- 89 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-~i~~~~q~~~~~~~~t~~~~l~~~~~~~--- 89 (127)
+++|+|+||+|++|++++|+|||||||||||++|+|. |.+.++ .++|++|++... +.|++||+.+.....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~-~~Ti~eNI~~g~~~~~~~ 517 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIM-PGTIKDNIIFGLSYDEYR 517 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccC-CccHHHHHHhccccchHH
Confidence 4589999999999999999999999999999999995 344443 499999997654 569999998753211
Q ss_pred hHHHHHHHHhHhh----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 90 TVCKVKELGKKIL----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 90 ~~~~~~~~~~~~~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..+.++....... .....+.+||||||||++|||||.+
T Consensus 518 ~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~ 565 (1490)
T TIGR01271 518 YTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYK 565 (1490)
T ss_pred HHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHc
Confidence 1112221111110 1122345699999999999999864
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.89 E-value=4.6e-23 Score=177.79 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=89.2
Q ss_pred eeeeceeEEEeC-------------CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-------ceeeee---
Q psy18211 6 ALEGREVILVAR-------------PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-------LCKIKA--- 62 (127)
Q Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-------~~~~~~--- 62 (127)
.+..+||++... .+++|+|+|+++++|++++|+|||||||||||++|+|.. ++.+++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 378899988763 347999999999999999999999999999999999942 223321
Q ss_pred --------eeeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHhh---hcccC-----CCCCCcccch
Q psy18211 63 --------SDLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKIL---LSQVK-----GKNMSKTEKK 117 (127)
Q Consensus 63 --------i~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~~---~~~~~-----~~~LSgGekq 117 (127)
++|++|++...+..||+|++.+.... ...+.++++..... ..+.. ...|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 69999998777788999999875421 11112233322221 22232 1469999999
Q ss_pred hhhhHhhhhC
Q psy18211 118 PLQPQYSLIK 127 (127)
Q Consensus 118 rv~ia~aL~~ 127 (127)
||.||++|+.
T Consensus 1027 RvsIa~aL~~ 1036 (1470)
T PLN03140 1027 RLTIAVELVA 1036 (1470)
T ss_pred HHHHHHHHhh
Confidence 9999999973
No 350
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.2e-23 Score=143.78 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=86.9
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-------------- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-------------- 61 (127)
|...|.+++.++|+.|++..-.+||||++.|||+.||+|++|||||||+++|++... +.+.
T Consensus 1 ~~~~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 1 MMDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred CCCCcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence 445689999999999999999999999999999999999999999999999999432 2221
Q ss_pred ---------eeeeeeecccCCCCcc------hHHHHHH-HH------hhhhHHHHHHHHhHhhhcccCCCCCCcccchhh
Q psy18211 62 ---------ASDLISRATTSPWPGT------TLNLLKE-II------KIQTVCKVKELGKKILLSQVKGKNMSKTEKKPL 119 (127)
Q Consensus 62 ---------~i~~~~q~~~~~~~~t------~~~~l~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv 119 (127)
.-||+-|++..-..+. +-|-+.- .. .....+.+++..+...-.+..+..+|||++||+
T Consensus 81 aeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRL 160 (258)
T COG4107 81 AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRL 160 (258)
T ss_pred HHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHH
Confidence 1466766654433222 2222211 11 112233444444443333444456999999999
Q ss_pred hhHhhhh
Q psy18211 120 QPQYSLI 126 (127)
Q Consensus 120 ~ia~aL~ 126 (127)
.|||-|+
T Consensus 161 QiARnLV 167 (258)
T COG4107 161 QIARNLV 167 (258)
T ss_pred HHHHHhc
Confidence 9999875
No 351
>KOG0054|consensus
Probab=99.89 E-value=3.5e-23 Score=175.54 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=91.2
Q ss_pred eeeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 6 ALEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
.|+++|++.+|... .+|+++||+|++||+|||+|+.|||||||..+|-+. |.+.+++ ++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 59999999999764 799999999999999999999999999999999983 4555543 78
Q ss_pred eeeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHh-------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKI-------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~-------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||+|.. |.+|+|.|+.=...+ ...+.+++..... .++ ..-+.++|-||||.+||||||++
T Consensus 1218 IIPQdPvL-FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1218 IIPQDPVL-FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred eeCCCCce-ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 99999865 678999998532221 1122233221111 111 23346799999999999999986
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=3e-23 Score=144.18 Aligned_cols=97 Identities=21% Similarity=0.107 Sum_probs=61.9
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-CceeeeeeeeeeecccCCCCcchHHHHHHHHhhhhHHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-DLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKE 96 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~ 96 (127)
.+++|+|+||++++|++++|+||||||||||||++.+. +++.+.+ +... +.. +.+.+.. . .+.++.
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~-----~~~~-~~~----~~~~~~~-q--~~~l~~ 73 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLIS-----FLPK-FSR----NKLIFID-Q--LQFLID 73 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECC-----cccc-ccc----ccEEEEh-H--HHHHHH
Confidence 35799999999999999999999999999999999752 2222211 0000 000 0000000 0 234444
Q ss_pred HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 97 LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 97 ~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.......+....+||+|||||++||+||++
T Consensus 74 ~~L~~~~~~~~~~~LSgGq~qrl~laral~~ 104 (176)
T cd03238 74 VGLGYLTLGQKLSTLSGGELQRVKLASELFS 104 (176)
T ss_pred cCCCccccCCCcCcCCHHHHHHHHHHHHHhh
Confidence 4433222344556699999999999999974
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.89 E-value=3.3e-23 Score=166.27 Aligned_cols=116 Identities=13% Similarity=0.079 Sum_probs=78.7
Q ss_pred ceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------------------------
Q psy18211 10 REVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA-------------------------- 62 (127)
Q Consensus 10 ~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~-------------------------- 62 (127)
++++++|+.+ .+|++++ .+++||++||+||||||||||+|+|+|...+..+.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3489999874 6999999 99999999999999999999999999953221111
Q ss_pred ------eeeeeecccCC---CCcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 ------SDLISRATTSP---WPGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 ------i~~~~q~~~~~---~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+++.+|..... +..++.|++..... ....+.++.+... ...++...+|||||||||+||+||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 23334432221 23377887764211 1223344444433 23455556699999999999999974
No 354
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.88 E-value=2.5e-22 Score=152.68 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=89.5
Q ss_pred CCCCCeeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----------Cceeee-----
Q psy18211 1 MELWPALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----------DLCKIK----- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----------~~~~~~----- 61 (127)
|..++.|+++|++..|. ..++++++||+|++||.++|+|.+|||||-..+.+++. +++.++
T Consensus 1 ~~~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCCCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 34457899999999996 57899999999999999999999999999888888873 222222
Q ss_pred -------------eeeeeeecccCC-CCc-chHHHHHHHHh-------hhhHHHHHHHHhHh------hhcccCCCCCCc
Q psy18211 62 -------------ASDLISRATTSP-WPG-TTLNLLKEIIK-------IQTVCKVKELGKKI------LLSQVKGKNMSK 113 (127)
Q Consensus 62 -------------~i~~~~q~~~~~-~~~-t~~~~l~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~LSg 113 (127)
.|+++||++-.. +|. |+...+..... ...+.+.-+++... ...+.++.+|||
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 389999987432 333 55444443321 11222222222222 234677889999
Q ss_pred ccchhhhhHhhhh
Q psy18211 114 TEKKPLQPQYSLI 126 (127)
Q Consensus 114 Gekqrv~ia~aL~ 126 (127)
||||||+||+||+
T Consensus 161 GqRQRVMIAMALa 173 (534)
T COG4172 161 GQRQRVMIAMALA 173 (534)
T ss_pred chhhHHHHHHHHc
Confidence 9999999999986
No 355
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.1e-22 Score=138.32 Aligned_cols=51 Identities=24% Similarity=0.143 Sum_probs=46.9
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
++|+++.|.++++++++||++++|++++|+|+||||||||+++|+|...+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 679999998889999999999999999999999999999999999965443
No 356
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=5.2e-23 Score=149.61 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=78.5
Q ss_pred CeeeeceeEEEeCC---------------------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cce
Q psy18211 5 PALEGREVILVARP---------------------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLC 58 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~ 58 (127)
.++.++|+++.|.- .+++.|+||+|++|+++|++|+|||||||++|+|+|. |.+
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 36889999998831 2589999999999999999999999999999999994 334
Q ss_pred eeee-------------eeeee-ecccCCCCcchHHHHHHHH------hhhhHHHHHHHHhHh---hhcccCCCCCCccc
Q psy18211 59 KIKA-------------SDLIS-RATTSPWPGTTLNLLKEII------KIQTVCKVKELGKKI---LLSQVKGKNMSKTE 115 (127)
Q Consensus 59 ~~~~-------------i~~~~-q~~~~~~~~t~~~~l~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~LSgGe 115 (127)
.+++ +++++ |.....|...+.|-+.... .....+++..+..-. ...+.+...||.||
T Consensus 82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGq 161 (325)
T COG4586 82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQ 161 (325)
T ss_pred EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchH
Confidence 4432 22222 2222233333333322211 111223333322221 12233444599999
Q ss_pred chhhhhHhhhhC
Q psy18211 116 KKPLQPQYSLIK 127 (127)
Q Consensus 116 kqrv~ia~aL~~ 127 (127)
|+|+.||.||+|
T Consensus 162 RmraeLaaaLLh 173 (325)
T COG4586 162 RMRAELAAALLH 173 (325)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 357
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=1.4e-22 Score=175.91 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=80.3
Q ss_pred eCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee-eeeeeeeecccCCCCcchHHHHHHHHhhh
Q psy18211 16 ARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI-KASDLISRATTSPWPGTTLNLLKEIIKIQ 89 (127)
Q Consensus 16 ~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~-~~i~~~~q~~~~~~~~t~~~~l~~~~~~~ 89 (127)
++++++|+|+||+|++|++++|+||||||||||+++|+|..+ +.+ ..++|++|++.. ++.|++||+.+.....
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l-~~~Tv~enI~~~~~~~ 748 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWI-MNATVRGNILFFDEED 748 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCcc-CCCcHHHHHHcCChhh
Confidence 345679999999999999999999999999999999999543 222 348999999865 4679999998743211
Q ss_pred ---hHHHHHHHHh-----Hh-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 90 ---TVCKVKELGK-----KI-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 90 ---~~~~~~~~~~-----~~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..+.++.... .. ......+.+|||||||||+|||||.+
T Consensus 749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~ 799 (1560)
T PTZ00243 749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYA 799 (1560)
T ss_pred HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 1111111100 00 11234456799999999999999864
No 358
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.88 E-value=2.2e-22 Score=144.22 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=70.8
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------eeeeeeecccCC--CCcchHHHHHHHHh---
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------ASDLISRATTSP--WPGTTLNLLKEIIK--- 87 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------~i~~~~q~~~~~--~~~t~~~~l~~~~~--- 87 (127)
|+|++||+++|+|+||||||||+++|+|. |++.++ .++|++|++... ++.|+.+++.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999994 333332 389999987553 34689999865321
Q ss_pred -------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 88 -------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 88 -------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
....+.+..+.... ...+....+||+|||||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 130 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALAT 130 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 01112233322222 22344556699999999999999974
No 359
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.87 E-value=5.4e-22 Score=150.87 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=92.6
Q ss_pred CeeeeceeEEEeCC-----------CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeeee-------
Q psy18211 5 PALEGREVILVARP-----------EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIKA------- 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-----------~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~~------- 62 (127)
+.++++++...|.- ..+++++||++++||.+||+|++|||||||=++|.+. |.+.+.+
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~ 354 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccC
Confidence 47999999999842 3589999999999999999999999999999988884 3333322
Q ss_pred ----------eeeeeecccCC--CCcchHHHHHHHHh--------hhhHH----HHHHHHhHhhhcccCCCCCCcccchh
Q psy18211 63 ----------SDLISRATTSP--WPGTTLNLLKEIIK--------IQTVC----KVKELGKKILLSQVKGKNMSKTEKKP 118 (127)
Q Consensus 63 ----------i~~~~q~~~~~--~~~t~~~~l~~~~~--------~~~~~----~~~~~~~~~~~~~~~~~~LSgGekqr 118 (127)
+-++||++... +.+||.+.+..+.. ...++ .+++.+.......+++.++|||||||
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQR 434 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQR 434 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhH
Confidence 67899988653 46688888876552 11122 33333333345578888999999999
Q ss_pred hhhHhhhh
Q psy18211 119 LQPQYSLI 126 (127)
Q Consensus 119 v~ia~aL~ 126 (127)
++|||||+
T Consensus 435 IAIARAli 442 (534)
T COG4172 435 IAIARALI 442 (534)
T ss_pred HHHHHHHh
Confidence 99999986
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-22 Score=154.18 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=89.3
Q ss_pred eeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------eeee
Q psy18211 7 LEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SDLI 66 (127)
Q Consensus 7 l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~~~ 66 (127)
+..+++++.|+ .+++|+++||++++|+.++++|++|+||||+++++.+. |.+.+++ ||++
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~V 342 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIV 342 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcC
Confidence 67899999996 47899999999999999999999999999999999983 4444443 8999
Q ss_pred eecccCCCCcchHHHHHHHHhhhhHHHHHH----HHhHh-------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKIQTVCKVKE----LGKKI-------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~----~~~~~-------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||+...+ .-|...|+.+..+...++.+.. ..+.. ... -..+-.|||||||||+|||+|++
T Consensus 343 PQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 343 PQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred cccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 9998664 4488888888764433222221 11111 111 12223499999999999999974
No 361
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=1.8e-22 Score=142.73 Aligned_cols=121 Identities=17% Similarity=0.090 Sum_probs=88.7
Q ss_pred eeeeceeEEEeC-----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee-------------
Q psy18211 6 ALEGREVILVAR-----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA------------- 62 (127)
Q Consensus 6 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~------------- 62 (127)
|+++.|+.+.|. .+++|.++|++|+.||++.++|.||||||||+++|+|. |++.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 467788888774 36799999999999999999999999999999999993 4444433
Q ss_pred -eeeeeecccC--CCCcchHHHHHHHHhh----------------hhHHHHHHHHhH--hhhcccCCCCCCcccchhhhh
Q psy18211 63 -SDLISRATTS--PWPGTTLNLLKEIIKI----------------QTVCKVKELGKK--ILLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 63 -i~~~~q~~~~--~~~~t~~~~l~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~LSgGekqrv~i 121 (127)
++-++|++.. ...+|+.||+.+.... ...+++..+... ..+.++... |||||||-+.+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-LSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhh-ccchHHHHHHH
Confidence 5567887743 4567999999876521 012233333222 234566665 99999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
++|-++
T Consensus 160 ~MAtl~ 165 (263)
T COG1101 160 LMATLH 165 (263)
T ss_pred HHHhcC
Confidence 998653
No 362
>KOG0054|consensus
Probab=99.86 E-value=1.1e-21 Score=166.49 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=90.9
Q ss_pred CeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee-eeeeeeecccCCCC
Q psy18211 5 PALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK-ASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~-~i~~~~q~~~~~~~ 75 (127)
+.++++|.++.++. .+.|+|+||+|++|+.++|+|+-|||||+||.+|.|. |...++ .++|+||.+=. +.
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI-~n 595 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWI-QN 595 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHh-hC
Confidence 46899999999864 4499999999999999999999999999999999994 444443 39999998743 36
Q ss_pred cchHHHHHHHHhhhh---HHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhh
Q psy18211 76 GTTLNLLKEIIKIQT---VCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 76 ~t~~~~l~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.|++||+.++.+.+. ++.++......++ .-..+-+||||||||+.||||+-
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY 659 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVY 659 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHh
Confidence 699999998764332 2223322211111 12344569999999999999973
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.86 E-value=5.5e-22 Score=171.19 Aligned_cols=69 Identities=19% Similarity=0.068 Sum_probs=58.6
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eeee-----------eeeeeeecccCCCCcch
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKIK-----------ASDLISRATTSPWPGTT 78 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~~-----------~i~~~~q~~~~~~~~t~ 78 (127)
++++|+|+|+.|++||+++|+||||||||||||+|+|... +.++ .++|++|+....+.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 5679999999999999999999999999999999999532 2222 27899999877778899
Q ss_pred HHHHHHHH
Q psy18211 79 LNLLKEII 86 (127)
Q Consensus 79 ~~~l~~~~ 86 (127)
+|++.+..
T Consensus 257 ~EtL~f~a 264 (1470)
T PLN03140 257 KETLDFSA 264 (1470)
T ss_pred HHHHHHHH
Confidence 99998754
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.86 E-value=2.1e-21 Score=167.38 Aligned_cols=110 Identities=12% Similarity=-0.025 Sum_probs=79.0
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC---------ceeee-------------eeeeeeecccCCCC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD---------LCKIK-------------ASDLISRATTSPWP 75 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~---------~~~~~-------------~i~~~~q~~~~~~~ 75 (127)
.+++|+|+|+++++||+++|+||||||||||||+|+|.. ++.++ .++|++|+....+.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999942 12222 17899998877778
Q ss_pred cchHHHHHHHHhh---------hh-H---HH-HHHHHhHhhhc---c-----cCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI---------QT-V---CK-VKELGKKILLS---Q-----VKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~---------~~-~---~~-~~~~~~~~~~~---~-----~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||+|++.+.... .. . +. .+.+.....+. + .....|||||||||.||++|+.
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 8999999875421 00 1 11 12222222121 1 2234699999999999999873
No 365
>KOG0061|consensus
Probab=99.85 E-value=4.1e-21 Score=154.71 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=90.3
Q ss_pred eeeceeEEEeC-----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceeeee-----------
Q psy18211 7 LEGREVILVAR-----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKIKA----------- 62 (127)
Q Consensus 7 l~~~~l~~~~~-----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~~~----------- 62 (127)
+..+|++.... .+++|++||.++++||++||+||+||||||||++|+|.. .+.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 56677776653 367999999999999999999999999999999999932 233333
Q ss_pred eeeeeecccCCCCcchHHHHHHHHh---------hhhHHHHHHHHhHh---hhcccCC-----CCCCcccchhhhhHhhh
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIK---------IQTVCKVKELGKKI---LLSQVKG-----KNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~---------~~~~~~~~~~~~~~---~~~~~~~-----~~LSgGekqrv~ia~aL 125 (127)
.||+.|+.......||+|.+.+... ...+++++++.... ...++.. ..+|||||+||.||.-|
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 7999999998889999999988652 12233444433332 2223332 35999999999999877
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
+.
T Consensus 186 l~ 187 (613)
T KOG0061|consen 186 LT 187 (613)
T ss_pred Hc
Confidence 63
No 366
>KOG0059|consensus
Probab=99.84 E-value=8e-21 Score=158.25 Aligned_cols=120 Identities=16% Similarity=0.098 Sum_probs=94.5
Q ss_pred eeeeceeEEEeCCCC-ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------------eee
Q psy18211 6 ALEGREVILVARPEP-NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~-~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------~i~ 64 (127)
.+.++|+++.|+.+. +++++||.|++||+.|+.|+|||||||++++|+|.. ++.+. .+|
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG 643 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG 643 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc
Confidence 588999999999876 999999999999999999999999999999999953 33331 189
Q ss_pred eeeecccCCCCcchHHHHHHHHhh------hhHHHHHH----HHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI------QTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|.||.......+|.+|++.++..- +..+.++. +........+ ...+|||+|+|+.+|.||+
T Consensus 644 yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~-~~~ySgG~kRkLs~aiali 714 (885)
T KOG0059|consen 644 YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQ-VRTYSGGNKRRLSFAIALI 714 (885)
T ss_pred cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccc-hhhCCCcchhhHHHHHHHh
Confidence 999998888889999999887631 12222333 3333233344 5559999999999999987
No 367
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.83 E-value=1.4e-20 Score=149.52 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=91.2
Q ss_pred CeeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC---Cceee-----eeeeeeeecccCCCC
Q psy18211 5 PALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS---DLCKI-----KASDLISRATTSPWP 75 (127)
Q Consensus 5 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~---~~~~~-----~~i~~~~q~~~~~~~ 75 (127)
..++++|++..-++ +..+++.+|+|++||.+-|.|+||||||||+|+|+|. +++.+ ..+-|+||.+-.+ .
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p-~ 469 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP-Q 469 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC-C
Confidence 46899999999864 7899999999999999999999999999999999994 33332 2378999987543 4
Q ss_pred cchHHHHHHHHhh--hhHHHHHHHHhHh---------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 76 GTTLNLLKEIIKI--QTVCKVKELGKKI---------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 76 ~t~~~~l~~~~~~--~~~~~~~~~~~~~---------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.|.+|.+.++... ..++.+.+.+... +-.++-...||+|||||+++||.|++
T Consensus 470 GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~ 532 (604)
T COG4178 470 GTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLH 532 (604)
T ss_pred ccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHc
Confidence 5999998887532 2333333322222 11233345699999999999999975
No 368
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=1.5e-20 Score=141.53 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=64.6
Q ss_pred EECCCCCCHHHHHHHHhcCC-----ceeee------------eeeeeeecccCCCCcchHHHHHHHHhh------hhHHH
Q psy18211 37 LVGCTNVGKSTLFNAFLQSD-----LCKIK------------ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCK 93 (127)
Q Consensus 37 liG~nGaGKSTLl~~i~g~~-----~~~~~------------~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~ 93 (127)
|+||||||||||+|+|+|.. ++.++ .++|++|++..++.+|+.+|+.+.... ...+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999953 23222 389999998777778999999876421 11122
Q ss_pred HHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 94 VKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 94 ~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.++.... ...++...+|||||||||+|||||++
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~ 117 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHh
Confidence 23322222 23455666799999999999999974
No 369
>KOG0927|consensus
Probab=99.81 E-value=2.5e-20 Score=145.42 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=88.3
Q ss_pred CCeeeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------eeeeeecccCC-
Q psy18211 4 WPALEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA--------SDLISRATTSP- 73 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~--------i~~~~q~~~~~- 73 (127)
.|++.+.|++|+|.++ .++++++|-|..++++++|||||||||||||+++|...+..+. +++..|+....
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence 4689999999999876 6899999999999999999999999999999999976555433 33333433222
Q ss_pred -CCcchHHHHHHHHhh-hhHH----HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 74 -WPGTTLNLLKEIIKI-QTVC----KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 74 -~~~t~~~~l~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
...+..+++.-.... ...+ .+.+++..-.....+..+||+|||.||.+|+.+++
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhc
Confidence 233555555433322 2223 33344444344456667899999999999998763
No 370
>KOG0927|consensus
Probab=99.80 E-value=1.6e-19 Score=140.92 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=49.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
-+.++|+++.|.+..+++|++|++.+|+++||+|+|||||||+|++|.|...+
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P 127 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP 127 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence 48899999999999999999999999999999999999999999999996544
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.80 E-value=2.3e-19 Score=128.99 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=33.5
Q ss_pred EeCCCCceeeceeEeecCCeEEEECCCCCCHHHHH-HHHh
Q psy18211 15 VARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF-NAFL 53 (127)
Q Consensus 15 ~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl-~~i~ 53 (127)
...+.++++++||+|++||+++|+|+||||||||+ ..+.
T Consensus 4 ~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~ 43 (226)
T cd03270 4 RGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred ccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 33467799999999999999999999999999995 4443
No 372
>KOG0062|consensus
Probab=99.79 E-value=1.2e-19 Score=141.04 Aligned_cols=117 Identities=21% Similarity=0.123 Sum_probs=78.2
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccC----------CCCc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTS----------PWPG 76 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~----------~~~~ 76 (127)
|..++++..||++.+|.+-++++..|-++||+||||+|||||||+|+.. .+... -++|+-.. .-+.
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f---~veqE~~g~~t~~~~~~l~~D~ 156 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGF---HVEQEVRGDDTEALQSVLESDT 156 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCcc---CchhheeccchHHHhhhhhccH
Confidence 7788999999999999999999999999999999999999999999871 11110 01111111 1111
Q ss_pred chHHHHHHHHh--hh-h-H----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 77 TTLNLLKEIIK--IQ-T-V----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 77 t~~~~l~~~~~--~~-~-~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+.+.+..... .. . + +.+..+++..++...+..+||||+|+|++|||||..
T Consensus 157 ~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 157 ERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred HHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc
Confidence 22333322110 00 1 1 134445555556666667799999999999999863
No 373
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.77 E-value=1.1e-18 Score=134.48 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=83.0
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee-----eeeeeeecccCCCCcchHHH
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK-----ASDLISRATTSPWPGTTLNL 81 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~-----~i~~~~q~~~~~~~~t~~~~ 81 (127)
++..++++.||+. .|+-=.=+|..||++|++||||-||||+.++|+|..++..+ .+.|-||-....++.||.+.
T Consensus 343 v~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 343 VEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 4445555666532 23333445677889999999999999999999996544332 38899998888889999998
Q ss_pred HHHHHhhh------hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 82 LKEIIKIQ------TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 82 l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+....... ..+.++-+.....+ ++....|||||.|||+||.+|.+
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~-e~~v~~LSGGELQRvaIaa~L~r 472 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLL-ERPVDELSGGELQRVAIAAALSR 472 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHH-hcccccCCchhHHHHHHHHHhcc
Confidence 87544321 12333334444333 44445599999999999999974
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.77 E-value=5.6e-19 Score=124.68 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=64.0
Q ss_pred ce-eeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------------ee-----------eeeeeeeeecccCCC
Q psy18211 21 NI-VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------------CK-----------IKASDLISRATTSPW 74 (127)
Q Consensus 21 ~l-~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------------~~-----------~~~i~~~~q~~~~~~ 74 (127)
-+ +++++++.+| +++|+||||||||||+++|++... .. ...+++++|++..++
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 45 7789999999 999999999999999999987311 00 123789999876653
Q ss_pred CcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 75 PGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 75 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.... .....+.++. ....+....+||+|||||++||++|+
T Consensus 90 ~~~~--------~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~ 129 (197)
T cd03278 90 SIIS--------QGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFA 129 (197)
T ss_pred eEEe--------hhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHH
Confidence 2110 0111222222 23345555669999999999999974
No 375
>KOG0060|consensus
Probab=99.75 E-value=2.4e-18 Score=135.35 Aligned_cols=121 Identities=17% Similarity=0.079 Sum_probs=86.2
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Ccee------eeeeeeeeeccc
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCK------IKASDLISRATT 71 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~------~~~i~~~~q~~~ 71 (127)
.+|++++++..-+. ..+++|+||+|+.|+.+-|+||||||||+|||++.|. |..+ ..++-|+||.|-
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPY 511 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPY 511 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCC
Confidence 37999999998754 5577889999999999999999999999999999993 2211 134889999874
Q ss_pred CCCCcchHHHHHHHHh-------hhhHHHHHHHHhHh----------hhc----ccCCCCCCcccchhhhhHhhhh
Q psy18211 72 SPWPGTTLNLLKEIIK-------IQTVCKVKELGKKI----------LLS----QVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 72 ~~~~~t~~~~l~~~~~-------~~~~~~~~~~~~~~----------~~~----~~~~~~LSgGekqrv~ia~aL~ 126 (127)
. ...|.+|.+.++.. ...++.+.+.+... .++ ..-...||+||+||++.||.+.
T Consensus 512 m-t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 512 M-TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred c-cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 4 34489998888731 11222223222211 111 2223469999999999999764
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.74 E-value=8e-19 Score=121.24 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=85.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeeee--------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIKA--------------SDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~~--------------i~~~~ 67 (127)
+++++|++.. +-|-++|.++..||++-+|||||||||||+..++|. |++.+.+ .+|+.
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLs 78 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLS 78 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHh
Confidence 5788887754 357889999999999999999999999999999994 4455543 57888
Q ss_pred ecccCCCCcchHHHHHHHHhhhh-HHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 68 RATTSPWPGTTLNLLKEIIKIQT-VCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|+....+.+.|...+.+..+... ...+....... +...+..++|||||=|||-+|...+
T Consensus 79 Qqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~L 141 (248)
T COG4138 79 QQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 141 (248)
T ss_pred hccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEE
Confidence 88888888889888877554321 12222222222 2334455679999999999986543
No 377
>KOG0064|consensus
Probab=99.73 E-value=5.1e-18 Score=132.71 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=79.6
Q ss_pred eeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--------eeeeeeeeeeecccCCCCcc
Q psy18211 7 LEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--------CKIKASDLISRATTSPWPGT 77 (127)
Q Consensus 7 l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--------~~~~~i~~~~q~~~~~~~~t 77 (127)
|.++|+..--+ +..++..++|+|++|-.+.|+||||||||+|+|+|.|.=+ |.-..+.|+||.|-.. ..|
T Consensus 482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms-~gt 560 (728)
T KOG0064|consen 482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMS-GGT 560 (728)
T ss_pred eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccC-cCc
Confidence 66777766554 4557899999999999999999999999999999999522 2224488999987543 446
Q ss_pred hHHHHHHHHh-------hhhHHHHHH----HHhHh--------hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 78 TLNLLKEIIK-------IQTVCKVKE----LGKKI--------LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 78 ~~~~l~~~~~-------~~~~~~~~~----~~~~~--------~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.+|.+.++.. .-.+..+.. ..... +........||||||||++.||..-
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 7776655431 011112222 11111 1111222459999999999999764
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.72 E-value=1.3e-19 Score=129.15 Aligned_cols=114 Identities=15% Similarity=-0.022 Sum_probs=72.0
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc---CC--ceeeeeeeeeeecccCCCCcchHHH
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ---SD--LCKIKASDLISRATTSPWPGTTLNL 81 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g---~~--~~~~~~i~~~~q~~~~~~~~t~~~~ 81 (127)
|+++|+. .|++..+++++++ ++++|+||||||||||+++|+- .. ......++++++....+++.++.++
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 79 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSV 79 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEE
Confidence 6778876 7889999999988 8999999999999999999983 21 1111347777777655555444443
Q ss_pred HHHHHhh-------------hhHHH---HHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 82 LKEIIKI-------------QTVCK---VKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 82 l~~~~~~-------------~~~~~---~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..+.... ..... ..+..... ...++....||+|||||++||+|++
T Consensus 80 ~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~ 143 (212)
T cd03274 80 EVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA 143 (212)
T ss_pred EEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence 3221100 00000 01111111 1223445569999999999999884
No 379
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.2e-16 Score=121.76 Aligned_cols=119 Identities=19% Similarity=0.109 Sum_probs=78.0
Q ss_pred eeeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCCcchHHHHHH
Q psy18211 6 ALEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKE 84 (127)
Q Consensus 6 ~l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~ 84 (127)
-|+++|+.+.|.+. .-+.+||++|++||++.|+|.||||||||.++++|...++.++|-.- .++.. +.+..|.-.+
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld-g~pV~--~e~ledYR~L 398 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD-GKPVS--AEQLEDYRKL 398 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC-CccCC--CCCHHHHHHH
Confidence 58999999999765 67889999999999999999999999999999999766655544221 22221 1122221111
Q ss_pred H-----------H---------hhhhHHHHHHHHhHhh--hc--ccCCCCCCcccchhhhhHhhhhC
Q psy18211 85 I-----------I---------KIQTVCKVKELGKKIL--LS--QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 85 ~-----------~---------~~~~~~~~~~~~~~~~--~~--~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
. . +...+..++++..... +. +-....||.|||+|+++--||++
T Consensus 399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence 0 0 1112334444443321 11 22234599999999999988863
No 380
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.71 E-value=6.1e-18 Score=120.48 Aligned_cols=114 Identities=15% Similarity=0.007 Sum_probs=66.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEee-cCCeEEEECCCCCCHHHHHHHHhcC--Cc----eee-------------eeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLS-SAGDVYLVGCTNVGKSTLFNAFLQS--DL----CKI-------------KASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~-~ge~i~liG~nGaGKSTLl~~i~g~--~~----~~~-------------~~i~~ 65 (127)
.|+++|+. .|.++ .+++|+.. +|++++|+||||||||||+++|++. +. ... ..+++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 48889988 66554 55667654 5899999999999999999999952 11 111 12666
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHH-HHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVC-KVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++|.....+ .+.............. .+...... ...+....+||+|||||++||+||+
T Consensus 81 ~f~~~~~~~--~~~r~~gl~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~ 139 (213)
T cd03279 81 TFQLGGKKY--RVERSRGLDYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALA 139 (213)
T ss_pred EEEECCeEE--EEEEecCCCHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHH
Confidence 776653311 1111110000000000 01111111 2335555669999999999999985
No 381
>KOG0066|consensus
Probab=99.70 E-value=2.1e-17 Score=127.59 Aligned_cols=119 Identities=17% Similarity=0.168 Sum_probs=87.7
Q ss_pred CeeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee--------eeeeeeecccCCC-
Q psy18211 5 PALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK--------ASDLISRATTSPW- 74 (127)
Q Consensus 5 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~--------~i~~~~q~~~~~~- 74 (127)
|+|-+.+|+|.| +.+++|..++|-|.-..+|+|+||||.||||||++|.|...+.-+ .||+.-|+..-..
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~ 664 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALN 664 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhc
Confidence 578899999999 568999999999999999999999999999999999996544332 2777767654332
Q ss_pred -CcchHHHHHHHHh---hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHh
Q psy18211 75 -PGTTLNLLKEIIK---IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 75 -~~t~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~ 123 (127)
..|..|++...+. ...+..+-.++...+...-....||||||.||++|-
T Consensus 665 ~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValae 717 (807)
T KOG0066|consen 665 GEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAE 717 (807)
T ss_pred cccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHH
Confidence 2366666654331 223444555555544444445569999999999985
No 382
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=2.2e-17 Score=119.29 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=34.8
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|+++|. ++|++..++.+++ +++++|+||||||||||+++|++
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHH
Confidence 455553 3577888888887 78999999999999999999983
No 383
>KOG2355|consensus
Probab=99.70 E-value=6.4e-17 Score=114.32 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=46.8
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.|++.++.+.|.. .+++.|+|++++.|.+..++|.||||||||||+++|
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsG 62 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG 62 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcC
Confidence 6999999999964 689999999999999999999999999999999999
No 384
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.68 E-value=7.7e-17 Score=118.18 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHH
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAF 52 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i 52 (127)
...|++++++|+.|..++|+|++|||||||++.+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 4479999999999999999999999999999866
No 385
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.61 E-value=2.3e-16 Score=114.85 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=31.4
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|+++|. +.|.+..++.++ ...+++|+||||||||||+++|++.
T Consensus 6 ~~~~~f-~~~~~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 6 IILDGF-KSYATRTVISGF-----DPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred EEEeCc-cccCcCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 566665 556544433232 2669999999999999999999873
No 386
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.60 E-value=1.5e-15 Score=97.32 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=50.4
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------------eeeeeecccCCCCcchHHHHHH
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA--------------SDLISRATTSPWPGTTLNLLKE 84 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~--------------i~~~~q~~~~~~~~t~~~~l~~ 84 (127)
+.++++++|++++|++++|+||||||||||++++. .+...+.+ +++.+|+ .++.++++|+.+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni~~ 77 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNIFL 77 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhcee
Confidence 56899999999999999999999999999999998 44443322 4566565 567789999876
No 387
>KOG0065|consensus
Probab=99.59 E-value=1.4e-15 Score=128.36 Aligned_cols=119 Identities=14% Similarity=0.088 Sum_probs=85.5
Q ss_pred eeeceeEEEe----CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-------Cceeeee-----------ee
Q psy18211 7 LEGREVILVA----RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-------DLCKIKA-----------SD 64 (127)
Q Consensus 7 l~~~~l~~~~----~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-------~~~~~~~-----------i~ 64 (127)
....|+.+.. +.+++|+||+=-++||-.+||+|+|||||||||++|+|. |++.+++ +|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 3344444443 457899999999999999999999999999999999993 3344433 89
Q ss_pred eeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHh---hh----cccCCCCCCcccchhhhhHhhh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKI---LL----SQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~---~~----~~~~~~~LSgGekqrv~ia~aL 125 (127)
|+.|++......||+|-|.+.+.- +..+.+++..... .. .-.++.-||..||+|+.||--|
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred eeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE
Confidence 999998888888999999886521 1112333322221 12 2334456999999999998654
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.59 E-value=1.4e-15 Score=107.82 Aligned_cols=91 Identities=14% Similarity=-0.024 Sum_probs=56.7
Q ss_pred ceeEeecCCeEEEECCCCCCHHHHHHHHh----cCCceee----------------eeeeeeeeccc-CC----CCcchH
Q psy18211 25 ADLVLSSAGDVYLVGCTNVGKSTLFNAFL----QSDLCKI----------------KASDLISRATT-SP----WPGTTL 79 (127)
Q Consensus 25 vs~~i~~ge~i~liG~nGaGKSTLl~~i~----g~~~~~~----------------~~i~~~~q~~~-~~----~~~t~~ 79 (127)
.++++.+| +++|+||||||||||+++|+ |...+.. ..+++.+|+.. .. ..+++.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34556677 99999999999999999995 6322111 12777888762 11 123666
Q ss_pred HHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchh------hhhHhhhh
Q psy18211 80 NLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKP------LQPQYSLI 126 (127)
Q Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqr------v~ia~aL~ 126 (127)
+++.+.. ...+.. ..++...+||+||+|| ++||+||+
T Consensus 95 ~~~~~~~----~~~~~~------~~~~~~~~LS~G~~~~~~la~rlala~al~ 137 (204)
T cd03240 95 ENVIFCH----QGESNW------PLLDMRGRCSGGEKVLASLIIRLALAETFG 137 (204)
T ss_pred hceeeec----hHHHHH------HHhcCccccCccHHHHHHHHHHHHHHHHhc
Confidence 7664421 111111 1144555699999996 67777764
No 389
>KOG0066|consensus
Probab=99.58 E-value=5.4e-15 Score=114.43 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=46.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-|.++|.+.+..++.+|.+.|+.|-.|.++||+||||-||||||+.|+.
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~ 312 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA 312 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence 4899999999889999999999999999999999999999999999987
No 390
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.54 E-value=2.6e-14 Score=119.65 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=37.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
.|+++|++. ..|+|+||+|+.||+++|+|+||||||||++.+.
T Consensus 614 ~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 577777752 3699999999999999999999999999998763
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=3.6e-14 Score=100.21 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=56.9
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC--Cc------ee-----------eeeeeeeeecccCCCCcchHHH
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS--DL------CK-----------IKASDLISRATTSPWPGTTLNL 81 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~--~~------~~-----------~~~i~~~~q~~~~~~~~t~~~~ 81 (127)
.++++++++.+| +.+|+||||+|||||+..|.-. +. .. ...+.+.++...... +
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 456777887776 7799999999999999998741 11 00 012455555433222 1
Q ss_pred HHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 82 LKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.........++++.......++...+||+|||||++||+||+
T Consensus 84 ---~~~~~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~ 125 (198)
T cd03276 84 ---PLCVLSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLS 125 (198)
T ss_pred ---cCCHHHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHH
Confidence 000001122222222223345555679999999999999983
No 392
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.6e-14 Score=110.74 Aligned_cols=118 Identities=10% Similarity=0.053 Sum_probs=82.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee---------------eee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK---------------ASD 64 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~---------------~i~ 64 (127)
|.++++|++..- .++|+||++++||++||.|-=|||+|=|++.|.|. |++.++ +++
T Consensus 262 ~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 262 PVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred cEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 467778776532 68999999999999999999999999999999993 333332 388
Q ss_pred eeeeccc---CCCCcchHHHHHHHHhhh-----------h----HHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 65 LISRATT---SPWPGTTLNLLKEIIKIQ-----------T----VCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 65 ~~~q~~~---~~~~~t~~~~l~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|+|.+.. ....+++.+|+.+..... . ++..+++.....-.+....+||||.+|||.|||.|.
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 9987653 345778999987662110 0 111222222222223444569999999999999885
No 393
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.52 E-value=2.2e-14 Score=110.16 Aligned_cols=107 Identities=21% Similarity=0.152 Sum_probs=70.4
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--------ceeeee--------eeeeeecccCCCC-cchHHHH
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--------LCKIKA--------SDLISRATTSPWP-GTTLNLL 82 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--------~~~~~~--------i~~~~q~~~~~~~-~t~~~~l 82 (127)
.+++|+||++++||+++++|++||||||+|++|+|.. .++.+. .+++|.+....+. .|+.|.+
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHH
Confidence 6999999999999999999999999999999999931 112221 1233333222222 2445544
Q ss_pred HHHHh--hhhHHHHHHHHhHhh-hcccCCCCCCcccchhhhhHhhhh
Q psy18211 83 KEIIK--IQTVCKVKELGKKIL-LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 83 ~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..... ....+.+.+.+.... +-.+..+.||.|||.|+-||.+|.
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla 523 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA 523 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh
Confidence 32211 123456666554432 335555679999999999999875
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=4.3e-14 Score=118.14 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=35.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHH
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFN 50 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~ 50 (127)
.|+++|++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 612 ~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 577777763 3699999999999999999999999999998
No 395
>KOG0063|consensus
Probab=99.49 E-value=1.1e-13 Score=106.52 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=79.2
Q ss_pred eCC-CCceeeceeEeecCC-----eEEEECCCCCCHHHHHHHHhcCCceee------eeeeeeeecccCCCCcchHHHHH
Q psy18211 16 ARP-EPNIVSADLVLSSAG-----DVYLVGCTNVGKSTLFNAFLQSDLCKI------KASDLISRATTSPWPGTTLNLLK 83 (127)
Q Consensus 16 ~~~-~~~l~~vs~~i~~ge-----~i~liG~nGaGKSTLl~~i~g~~~~~~------~~i~~~~q~~~~~~~~t~~~~l~ 83 (127)
|.+ +..+.++.+.|+.|| ++..+|.||.|||||+++++|..++.. -.++|-||.....+..||++.+.
T Consensus 345 Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~ 424 (592)
T KOG0063|consen 345 YPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLH 424 (592)
T ss_pred cCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHH
Confidence 443 456789999998885 789999999999999999999544333 34889999887777888998776
Q ss_pred HHHhh------hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 84 EIIKI------QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 84 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.-... ...+.++.+.......+.+.+ |||||.|||++|.+|
T Consensus 425 ~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~-lSggelQRval~KOG 471 (592)
T KOG0063|consen 425 TKIRDAYMHPQFVNDVMKPLQIENIIDQEVQG-LSGGELQRVALALCL 471 (592)
T ss_pred HHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhc-CCchhhHHHHHHHhc
Confidence 43221 112334445555444455554 999999999999876
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.49 E-value=1.8e-14 Score=111.43 Aligned_cols=115 Identities=16% Similarity=0.061 Sum_probs=66.2
Q ss_pred eeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeee--------------------------
Q psy18211 11 EVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKAS-------------------------- 63 (127)
Q Consensus 11 ~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i-------------------------- 63 (127)
++.++||.. ..|..+- ..++|.++||+|+||.||||-+|+|+|...+..+..
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 467888642 2222221 247899999999999999999999999644433210
Q ss_pred ------eeeeecccC---CCCcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 ------DLISRATTS---PWPGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ------~~~~q~~~~---~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..-+|-... ....++.|.+.-... ...++.++.+... ...++-.++|||||-||++||.++++
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~r 230 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLR 230 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhc
Confidence 000110000 011233333322111 1223444555544 33445555699999999999999875
No 397
>KOG0062|consensus
Probab=99.48 E-value=3.4e-14 Score=110.92 Aligned_cols=122 Identities=15% Similarity=0.022 Sum_probs=84.6
Q ss_pred CCeeeeceeEEEeCCC--CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--------eeeeeecccCC
Q psy18211 4 WPALEGREVILVARPE--PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA--------SDLISRATTSP 73 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~--~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~--------i~~~~q~~~~~ 73 (127)
.|.|++.+|++.|... +.+..++++++-.++++++|+||+||||+++++.+.+++..+- ++|..|.....
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF 439 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH
Confidence 5789999999999754 5999999999999999999999999999999999977654432 56666654443
Q ss_pred CCcchH--HHHHHHHhhhh----HHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 74 WPGTTL--NLLKEIIKIQT----VCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 74 ~~~t~~--~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
+...+. |...-..+... ++.+..++....+.......||||||-||++|...
T Consensus 440 l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHh
Confidence 333222 22221111122 33444455444444333556999999999999754
No 398
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.46 E-value=1.9e-13 Score=119.52 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=35.1
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHH
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFN 50 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~ 50 (127)
.+++++++ ...|+++||+|++||+++|+|+||||||||++
T Consensus 600 ~L~l~~~~-----~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKAT-----KHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEeccc-----cCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 46666665 23799999999999999999999999999999
No 399
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.46 E-value=6.5e-13 Score=103.33 Aligned_cols=123 Identities=11% Similarity=0.036 Sum_probs=88.1
Q ss_pred CCeeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------------
Q psy18211 4 WPALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------------- 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------------- 61 (127)
.+.|+++|++..-.. .+.+++|||+|+.||++||.|-.|-|-+-|+.+|+|.- .+.++
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 357999999987643 57899999999999999999999999999999999942 22221
Q ss_pred eeeeeeeccc---CCCCcchHHHHHHHHhh-------------h----hHHHHHHHHhHhhhcccCCCCCCcccchhhhh
Q psy18211 62 ASDLISRATT---SPWPGTTLNLLKEIIKI-------------Q----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 62 ~i~~~~q~~~---~~~~~t~~~~l~~~~~~-------------~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~i 121 (127)
+++|+|.+.. ...++++.||+.+.... . ..+.++++.....-...+..+||||.+||+-+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 3788887653 34677999998764421 0 11122222222112234455699999999999
Q ss_pred Hhhhh
Q psy18211 122 QYSLI 126 (127)
Q Consensus 122 a~aL~ 126 (127)
||-|.
T Consensus 415 aREl~ 419 (501)
T COG3845 415 ARELA 419 (501)
T ss_pred hhhhc
Confidence 99774
No 400
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=1.3e-13 Score=98.16 Aligned_cols=123 Identities=16% Similarity=0.125 Sum_probs=82.4
Q ss_pred CCeeeeceeEEEeC----CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----e-----ee----------
Q psy18211 4 WPALEGREVILVAR----PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----C-----KI---------- 60 (127)
Q Consensus 4 ~~~l~~~~l~~~~~----~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----~-----~~---------- 60 (127)
||.+.+.|++..+. -..+++.+|+++++||+-|++|.+|||||-..|+|+|... + .+
T Consensus 1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 46799999999884 3569999999999999999999999999999999999321 1 11
Q ss_pred --------eeeeeeeecccCCCC--cchHHHHHHHH-----h-----------hhhHHHHHHHHhHh--hhcccCCCCCC
Q psy18211 61 --------KASDLISRATTSPWP--GTTLNLLKEII-----K-----------IQTVCKVKELGKKI--LLSQVKGKNMS 112 (127)
Q Consensus 61 --------~~i~~~~q~~~~~~~--~t~~~~l~~~~-----~-----------~~~~~~~~~~~~~~--~~~~~~~~~LS 112 (127)
..++++||++..-.+ .++-..+.... + ...-+.+.+.++.. +....++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 127788888765322 12222221111 0 01112233333332 23356677899
Q ss_pred cccchhhhhHhhhh
Q psy18211 113 KTEKKPLQPQYSLI 126 (127)
Q Consensus 113 gGekqrv~ia~aL~ 126 (127)
.||-|+|+||.|++
T Consensus 161 eGE~QKVMIA~A~A 174 (330)
T COG4170 161 EGECQKVMIAIALA 174 (330)
T ss_pred cCcceeeeeehhhc
Confidence 99999999999975
No 401
>KOG0065|consensus
Probab=99.41 E-value=2.8e-13 Score=114.82 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=78.3
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC--------Cceeeee-----------eeeeeecccCCCCcchH
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS--------DLCKIKA-----------SDLISRATTSPWPGTTL 79 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~--------~~~~~~~-----------i~~~~q~~~~~~~~t~~ 79 (127)
.++++|+|.-+++|+.+.++||.||||||||+.++|. +++..++ ++|.+|+....+.+||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4699999999999999999999999999999999993 2233332 78899988888899999
Q ss_pred HHHHHHHhh-------h---hH--------HHHHHHHhHhhhccc----CCCCCCcccchhhhhHhhhh
Q psy18211 80 NLLKEIIKI-------Q---TV--------CKVKELGKKILLSQV----KGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 80 ~~l~~~~~~-------~---~~--------~~~~~~~~~~~~~~~----~~~~LSgGekqrv~ia~aL~ 126 (127)
|.+.+.... + .+ ..++.++..+-.+.. ...-.|||||+||.+|-+++
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 999886521 0 01 112222222222222 22348999999999987764
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=5.5e-13 Score=96.94 Aligned_cols=41 Identities=22% Similarity=0.153 Sum_probs=30.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|+++|. +.|.+...+++ .+ .+++|+||||||||||+.+|++
T Consensus 4 i~l~nf-~~~~~~~~~~~-----~~-~~~~i~G~NGsGKStll~ai~~ 44 (247)
T cd03275 4 LELENF-KSYKGRHVIGP-----FD-RFTCIIGPNGSGKSNLMDAISF 44 (247)
T ss_pred EEEECc-cccCCCeeecC-----CC-CeEEEECCCCCCHHHHHHHHHH
Confidence 667775 55654333332 23 4999999999999999999997
No 403
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.28 E-value=1.3e-12 Score=92.29 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred CceeeceeEeecCC-eEEEECCCCCCHHHHHHHHh
Q psy18211 20 PNIVSADLVLSSAG-DVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 20 ~~l~~vs~~i~~ge-~i~liG~nGaGKSTLl~~i~ 53 (127)
..+.++||++.+|+ +++|+||||+|||||+|+|+
T Consensus 15 ~~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 15 EKVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred CceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34678999999996 69999999999999999998
No 404
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.17 E-value=1.8e-11 Score=86.59 Aligned_cols=66 Identities=14% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeeeeeeeeecccCCCCcchHHHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKASDLISRATTSPWPGTTLNLLKEI 85 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 85 (127)
++.+++|++++. |++++|+||||||||||+|+|+|... ..+....+++|....+...++.|++...
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~ 83 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDG 83 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccc
Confidence 345677777765 79999999999999999999998321 1222233455544445566888887654
No 405
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=1.8e-10 Score=82.33 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=25.1
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++++.+++.+| +.+|+|+||+||||||.+|+-
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~ 45 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICL 45 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 45566665443 678999999999999999865
No 406
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.09 E-value=1.1e-10 Score=91.55 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.++|++||+++++||+++|+|||||||||||+ ++..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~ 54 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR 54 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC
Confidence 35899999999999999999999999999999 5543
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.07 E-value=4.5e-11 Score=85.87 Aligned_cols=38 Identities=16% Similarity=-0.014 Sum_probs=34.4
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+...+.+|++++..++++++|.||||+|||||+++++-
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH
Confidence 34568899999999999999999999999999999873
No 408
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.00 E-value=8.8e-10 Score=76.71 Aligned_cols=32 Identities=25% Similarity=0.206 Sum_probs=24.2
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.++...++.+.+|+||||+|||+++.+|+-
T Consensus 13 ~~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~ 44 (178)
T cd03239 13 RDETVVGGSNSFNAIVGPNGSGKSNIVDAICF 44 (178)
T ss_pred CCCEEecCCCceEEEECCCCCCHHHHHHHHHH
Confidence 33444443444899999999999999999865
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.97 E-value=1.4e-09 Score=74.34 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=26.9
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
....++.+.++.++.|+||||+||||+++.+..
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345556666667999999999999999999875
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.96 E-value=9.3e-10 Score=78.18 Aligned_cols=38 Identities=18% Similarity=0.044 Sum_probs=35.4
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..+.+|++|+++.|++++|+||||+||||+++++++
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999999999999999987
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.94 E-value=1.3e-09 Score=76.89 Aligned_cols=34 Identities=26% Similarity=0.280 Sum_probs=30.0
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+-..++++.+|++++|+||||||||||+++|++
T Consensus 18 ~~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 18 TFVPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred ceEeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 3456778888999999999999999999999995
No 412
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.94 E-value=1.5e-09 Score=84.69 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+..+++++ |++.+|++++|+|+||+|||||+++|+|..
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc
Confidence 45799999 999999999999999999999999999954
No 413
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.91 E-value=8.6e-09 Score=75.31 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=29.0
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
|.=+.+..|++++|+|++|+|||||++.++...
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344678999999999999999999999999854
No 414
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.91 E-value=4.1e-09 Score=86.59 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHH
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFN 50 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~ 50 (127)
..-|+||+.+|+-|-.++|.|-+|||||||++
T Consensus 614 ~nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn 645 (935)
T COG0178 614 RNNLKNIDVEIPLGVFTCVTGVSGSGKSTLIN 645 (935)
T ss_pred ccCcccceeecccccEEEEEecCCCCHHHhHH
Confidence 45799999999999999999999999999993
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.90 E-value=2.3e-09 Score=62.24 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.9
Q ss_pred eeeceeEeec-CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 22 IVSADLVLSS-AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 22 l~~vs~~i~~-ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.++++.+ |+.+.|.|+|||||||++.+|.-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445666765 56999999999999999998875
No 416
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.83 E-value=8.4e-09 Score=80.70 Aligned_cols=50 Identities=24% Similarity=0.201 Sum_probs=44.6
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.++.+++++.|. +..+++.++ +|.+|++++|+|+||+|||||+++|++..
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999995 567888885 99999999999999999999999999954
No 417
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.82 E-value=7.6e-09 Score=79.90 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=45.8
Q ss_pred eeeeceeEEEeCC-CCcee-----------eceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARP-EPNIV-----------SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~-----------~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+.++||++.|++ +.+|+ |+++.|.+|++++|+||.|+|||||++.|...
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 4889999999975 56787 99999999999999999999999999999984
No 418
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.77 E-value=8.8e-09 Score=74.08 Aligned_cols=37 Identities=14% Similarity=-0.037 Sum_probs=34.8
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+.+..|++|++.+|++++|+||||+||||+++++++
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3568899999999999999999999999999999998
No 419
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.71 E-value=1.9e-08 Score=78.53 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=44.7
Q ss_pred eeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 6 ALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 6 ~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
.++.++++..+ .+..+++++ |++.+||+++|+|+||+|||||+++|++....
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~ 181 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDA 181 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCC
Confidence 36667777777 467899999 99999999999999999999999999996443
No 420
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.69 E-value=3.8e-08 Score=74.40 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=36.8
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
+..+++.+ |.+.+|++++|+|+||+|||||+++|++...+.
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~ 96 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTAD 96 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCC
Confidence 46789999 999999999999999999999999999965444
No 421
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.69 E-value=1.5e-08 Score=80.02 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=46.9
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee--eeeeeeeecccCCCCcchHHHHHHHH
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI--KASDLISRATTSPWPGTTLNLLKEII 86 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~--~~i~~~~q~~~~~~~~t~~~~l~~~~ 86 (127)
++++.++.+..|.+++|+||||+||||++..|++...... ..++++..+. +..++.|++..+.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt---~RigA~EQLr~~A 309 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS---YRIGGHEQLRIYG 309 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc---cchhHHHHHHHHH
Confidence 4566777788999999999999999999999998432221 2467777664 3456788887654
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.69 E-value=6.9e-09 Score=72.46 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=30.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+-+.+.++.|+.++|+||||||||||+++|++.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34456778999999999999999999999999994
No 423
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.69 E-value=5.2e-08 Score=76.07 Aligned_cols=105 Identities=15% Similarity=0.166 Sum_probs=65.8
Q ss_pred eeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCCcchHHHHHHH
Q psy18211 7 LEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEI 85 (127)
Q Consensus 7 l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 85 (127)
++.+.++..|. +..+++. .|.+.+|++++|+|+||+|||||+++|++...+..+.++++.+. ..++.+++...
T Consensus 131 ~~r~~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer-----g~ev~e~~~~~ 204 (432)
T PRK06793 131 FEREEITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER-----GREVKDFIRKE 204 (432)
T ss_pred hheechhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC-----cccHHHHHHHH
Confidence 45566666665 3557777 49999999999999999999999999999766555445444333 23555554321
Q ss_pred HhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 86 IKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.... -+. .. -..... .+.|.|+|+|+..+.+.
T Consensus 205 l~~~---gl~---~t-vvv~~t-sd~s~~~r~ra~~~a~~ 236 (432)
T PRK06793 205 LGEE---GMR---KS-VVVVAT-SDESHLMQLRAAKLATS 236 (432)
T ss_pred hhhc---ccc---ee-EEEEEC-CCCCHHHHHHHHHHHHH
Confidence 1100 000 00 011222 34788888888777653
No 424
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.68 E-value=1.6e-08 Score=72.42 Aligned_cols=36 Identities=17% Similarity=0.062 Sum_probs=32.3
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
...+.+|++++..+ ++++|+||||+|||||||.+++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 44578999999887 9999999999999999999976
No 425
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.68 E-value=1.3e-08 Score=72.17 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~ 70 (127)
++|++++|+|+||||||||++.|++.... ..+++++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~ 42 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDN 42 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEecccc
Confidence 57899999999999999999999985432 2344554443
No 426
>KOG0063|consensus
Probab=98.66 E-value=1.5e-08 Score=78.59 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=27.4
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCCceee
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI 60 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~ 60 (127)
.+|++.|++|.||.||||-+++++|...+..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl 128 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL 128 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC
Confidence 6899999999999999999999999655443
No 427
>PRK08149 ATP synthase SpaL; Validated
Probab=98.65 E-value=6.3e-08 Score=75.56 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=35.8
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
+..+++++ +++.+|++++|+|+||+|||||+++|++...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~ 176 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE 176 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence 45799999 9999999999999999999999999999644
No 428
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.64 E-value=4.5e-08 Score=86.60 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=41.7
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHH-HHHhcCCce
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF-NAFLQSDLC 58 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl-~~i~g~~~~ 58 (127)
++..+++..+.....|+|++|+|++|++++|+|+||||||||+ .+|.+.++.
T Consensus 936 l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~L~~~G~~ 988 (1809)
T PRK00635 936 PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDILYAAGNI 988 (1809)
T ss_pred cccceEEEeccccccccceeEEecCCcEEEEECCCCCChhHHHHHHHHhhccE
Confidence 3456788887766789999999999999999999999999955 444454433
No 429
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.64 E-value=3.1e-08 Score=69.07 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
|++++|+||||||||||+++|++...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999643
No 430
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.60 E-value=7.1e-08 Score=75.57 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
+..+++++ |++.+|++++|+|+||+|||||+++|++...+.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~ 185 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD 185 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 45689999 999999999999999999999999999965433
No 431
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.58 E-value=7.8e-08 Score=75.07 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
+..+++++ |++.+|++++|+|+||+|||||+++|++...+.
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 172 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD 172 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCC
Confidence 56799999 999999999999999999999999999965443
No 432
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.58 E-value=5.1e-08 Score=67.60 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=26.9
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++++++.+| +++|+||||+||||++.+|.-
T Consensus 9 ~~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~ 41 (202)
T PF13476_consen 9 SFKDLEIDFSPG-LNVIYGPNGSGKSTILEAIRY 41 (202)
T ss_dssp TEEEEEEE--SE-EEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceEEEcCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 347788888776 999999999999999998865
No 433
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=5.5e-08 Score=77.33 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=44.7
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
..|++..||.+.+++++++.+..|+.++|+|+||+|||||++.|.|..
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccC
Confidence 458999999989999999999999999999999999999999999954
No 434
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.57 E-value=4.8e-08 Score=67.84 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=24.1
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+||+++|+|+||||||||+++|++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999999953
No 435
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=1e-07 Score=74.78 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=35.6
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 155 Gi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~ 193 (451)
T PRK05688 155 GIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE 193 (451)
T ss_pred ceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45789999 9999999999999999999999999999643
No 436
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.57 E-value=1e-07 Score=74.52 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
..+++.+ |++.+|++++|+|+||+|||||+++|++...
T Consensus 150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~ 187 (444)
T PRK08972 150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT 187 (444)
T ss_pred ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence 4567776 9999999999999999999999999998543
No 437
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.56 E-value=9.4e-08 Score=74.93 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
+..+++++ |++.+|++++|+|+||+|||||+++|++...+.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~ 190 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD 190 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 45688999 999999999999999999999999999965443
No 438
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.55 E-value=1.3e-07 Score=74.05 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=36.4
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
+..+++++ +++.+|++++|+|+||+|||||+++|++...+
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~ 189 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQC 189 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 46799999 99999999999999999999999999996543
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.53 E-value=1.6e-07 Score=67.41 Aligned_cols=38 Identities=26% Similarity=0.132 Sum_probs=35.2
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.+-+|++|+.+++++++|.||||+||||+++.++.
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~ 52 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCL 52 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHH
Confidence 35568899999999999999999999999999999998
No 440
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.51 E-value=1.8e-07 Score=72.75 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=40.5
Q ss_pred eeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 8 EGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 8 ~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
+-..++..|. +..+++.+ |++.+|++++|+|+||+|||||+++|++...+
T Consensus 113 ~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~ 163 (411)
T TIGR03496 113 KRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEA 163 (411)
T ss_pred hccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3344555554 46788888 99999999999999999999999999996543
No 441
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.50 E-value=2.3e-07 Score=72.25 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=37.0
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI 60 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~ 60 (127)
+..+++++ |.+.+|++++|+|+||+|||||+++|++...+..
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~ 165 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADI 165 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence 45789999 9999999999999999999999999999654433
No 442
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.50 E-value=2.6e-07 Score=72.29 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=36.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
+..+++++ |++.+|++++|+|+||+|||||+++|++.....
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d 189 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD 189 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence 45689999 999999999999999999999999999965433
No 443
>PRK05922 type III secretion system ATPase; Validated
Probab=98.49 E-value=2.2e-07 Score=72.64 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=33.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
..+++.+ +++.+|++++|+|+||+|||||+++|++....
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~ 183 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKS 183 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCC
Confidence 4466665 99999999999999999999999999996443
No 444
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.49 E-value=1.8e-07 Score=66.82 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=25.3
Q ss_pred eceeEeecC--CeEEEECCCCCCHHHHHHHHhc
Q psy18211 24 SADLVLSSA--GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 24 ~vs~~i~~g--e~i~liG~nGaGKSTLl~~i~g 54 (127)
..++.+.++ .+++|+||||+|||||||.++.
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 445555555 6899999999999999999984
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.49 E-value=1.1e-07 Score=66.89 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=25.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
++|++++|+||+|||||||++.|++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999854
No 446
>PRK15494 era GTPase Era; Provisional
Probab=98.49 E-value=1.2e-07 Score=72.05 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=44.4
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCC-------eEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAG-------DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge-------~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++.++++++|+. ...++.+++++++|+ .++|+|++|+|||||++.+.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 18 DTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred ccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 3677888888874 458999999999999 9999999999999999999984
No 447
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.47 E-value=3e-07 Score=71.71 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
..++ |.+|++.+|++++|+|+||+|||||+++|++...+.
T Consensus 128 i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~ 167 (418)
T TIGR03498 128 VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDAD 167 (418)
T ss_pred cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCCCC
Confidence 3455 579999999999999999999999999999965443
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.45 E-value=1.7e-07 Score=64.66 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=22.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|.+++|+||||||||||++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 689999999999999999999984
No 449
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.44 E-value=3.5e-07 Score=78.38 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.7
Q ss_pred eeeeceeEEEeCCCCceeeceeEe---ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVL---SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i---~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-|+++|+.-..+.. .|+|+. ..+.+++|+|||||||||+|.+|+.
T Consensus 5 ~l~~~nf~s~~~~~----~idf~~~~l~~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 5 SLRLKNLNSLKGEW----KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred EEEeecceeEcCCc----eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 48888887644432 588984 4589999999999999999999995
No 450
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.44 E-value=2.3e-07 Score=77.20 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=29.2
Q ss_pred eceeEeecC-CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 24 SADLVLSSA-GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 24 ~vs~~i~~g-e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|+++.++ ++++|+||||+|||||||++++.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHH
Confidence 479999887 89999999999999999999984
No 451
>PRK06820 type III secretion system ATPase; Validated
Probab=98.43 E-value=4.7e-07 Score=70.92 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=37.0
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI 60 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~ 60 (127)
+..+++.+ +++.+||+++|+|+||+|||||+++|++...+.+
T Consensus 150 Gi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv 191 (440)
T PRK06820 150 GIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADV 191 (440)
T ss_pred CCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCE
Confidence 46789999 9999999999999999999999999999654433
No 452
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=2.7e-07 Score=72.14 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+..+++++ +++.+|++++|+|+||+|||||+++|++.-
T Consensus 144 gi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~ 181 (434)
T PRK08472 144 GVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGC 181 (434)
T ss_pred hhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45689999 999999999999999999999999999843
No 453
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=1.8e-07 Score=72.90 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=24.4
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.|++++|+||||+||||+++.|++
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999999987
No 454
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.39 E-value=5.3e-07 Score=73.87 Aligned_cols=44 Identities=25% Similarity=0.197 Sum_probs=35.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCC-eEEEECCCCCCHHHHHHHHh
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAG-DVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge-~i~liG~nGaGKSTLl~~i~ 53 (127)
-|+++|+..-+|. .+++|+..+++ +++|.||||+|||||++++.
T Consensus 5 ~l~l~nf~~~~~~----~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~ 49 (650)
T TIGR03185 5 QLTLENFGPYRGR----QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQ 49 (650)
T ss_pred EEEEeceEEEcCC----ceeeeecCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4788998765543 46778887776 88999999999999999873
No 455
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.38 E-value=2.7e-07 Score=63.64 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|++++|+||||||||||++.|+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999874
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=2.3e-07 Score=76.76 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=31.9
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++.++.+++|++++|+||||+||||++..|++.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh
Confidence 56778888888999999999999999999999984
No 457
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.37 E-value=2.1e-07 Score=70.51 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=36.1
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++|.. +..-+.+..+++.+++.+.|+||||+||||+|.+|--
T Consensus 2 rLrkiSl~--nfr~f~~lditf~e~~ttIivgpNGsGKTtvLdair~ 46 (440)
T COG3950 2 RLRKISLN--NFRCFLNLDITFGESETTIIVGPNGSGKTTVLDAIRN 46 (440)
T ss_pred ccchhhhh--hhhhhhhceeecCCCceEEEECCCCCChhhHHHHHHH
Confidence 34455542 3446788899999999999999999999999998865
No 458
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.34 E-value=3.5e-07 Score=67.60 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=37.6
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeec-------CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSS-------AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~-------ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++++.++.+.. +.+++++++.+.+ +++++++|+||+||||+++.|++.
T Consensus 40 ~i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 40 KVKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred eEEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHH
Confidence 3555555554433 3457888888864 489999999999999999999884
No 459
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=9.6e-07 Score=65.28 Aligned_cols=32 Identities=31% Similarity=0.337 Sum_probs=27.4
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
.++++.+++.+| ..+|+|||||||||++.+|+
T Consensus 11 ~~~~~~i~~~~~-~~~i~G~nGsGKS~il~ai~ 42 (276)
T cd03241 11 LIEELELDFEEG-LTVLTGETGAGKSILLDALS 42 (276)
T ss_pred ceeeeEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 457778887665 89999999999999999986
No 460
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.33 E-value=5.5e-07 Score=70.64 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=32.2
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
.+++.+ |++.+|++++|+|+||+|||||+++|++...
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~ 200 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ 200 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCC
Confidence 355544 9999999999999999999999999999644
No 461
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.32 E-value=4.1e-07 Score=65.48 Aligned_cols=26 Identities=27% Similarity=0.163 Sum_probs=23.4
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+..++||+||||||||||.+.|++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999984
No 462
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.32 E-value=3.5e-07 Score=65.66 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++||.|+||||||||.+.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.31 E-value=3e-07 Score=69.02 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=29.0
Q ss_pred ceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 25 ADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 25 vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+++.++.|+.++|+|++|||||||+++|++..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 56778899999999999999999999999853
No 464
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=4.4e-07 Score=69.83 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=32.4
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++.++.++.|++++|+||||+||||++..|++.
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467778889999999999999999999999999873
No 465
>PLN02796 D-glycerate 3-kinase
Probab=98.31 E-value=1.7e-07 Score=71.22 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=32.1
Q ss_pred CceeeceeEe---ecCCe-----EEEECCCCCCHHHHHHHHhcCC
Q psy18211 20 PNIVSADLVL---SSAGD-----VYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 20 ~~l~~vs~~i---~~ge~-----i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.+++++++.+ ++|+. +||+|++|||||||++.|.+..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 4677888887 67776 9999999999999999999854
No 466
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.31 E-value=3.5e-07 Score=71.70 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
..+++.+ |++.+|++++|+|+||+|||||+++|++..
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 3578887 999999999999999999999999999853
No 467
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.29 E-value=1.3e-06 Score=64.40 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=26.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~ 43 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLLEAISL 43 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 455667776665 789999999999999999864
No 468
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.27 E-value=9.2e-07 Score=63.87 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=32.0
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHH-HHHHhc
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTL-FNAFLQ 54 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTL-l~~i~g 54 (127)
+.++++.+.+++. +++|+++.|.|+|||||||| ++++++
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5566677766542 79999999999999999999 688876
No 469
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.26 E-value=6.4e-07 Score=66.86 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-.++||.|+||||||||+++|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999773
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.26 E-value=6.1e-07 Score=62.94 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=21.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
++||+|++|||||||.+.|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999853
No 471
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.26 E-value=4.4e-07 Score=62.83 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.4
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+|+++++..+++.+ +|+|++|||||||++.+.+
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 57788888666555 9999999999999999987
No 472
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.25 E-value=1.4e-06 Score=69.44 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=37.7
Q ss_pred eEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 12 VILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 12 l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+...+|+..+++|+.+.+ ++.+++|.||+||||||+.+.|+.
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~ 306 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAK 306 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455678888999999988 889999999999999999999995
No 473
>PRK00064 recF recombination protein F; Reviewed
Probab=98.25 E-value=1.8e-06 Score=66.21 Aligned_cols=33 Identities=36% Similarity=0.393 Sum_probs=29.0
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-++++++++.+| +.+|+|||||||||++.+|..
T Consensus 13 ~~~~~~l~~~~~-~~~i~G~NgsGKT~lleai~~ 45 (361)
T PRK00064 13 NYEELDLELSPG-VNVLVGENGQGKTNLLEAIYL 45 (361)
T ss_pred cccceEEEecCC-eEEEECCCCCCHHHHHHHHHH
Confidence 456788888887 889999999999999999875
No 474
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.24 E-value=2.2e-06 Score=68.79 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=25.9
Q ss_pred ceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 25 ADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 25 vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++.+..+.+|+||||+||||++.+|+-
T Consensus 20 ~~i~f~~~g~~~i~G~NG~GKStll~aI~~ 49 (562)
T PHA02562 20 IEIQLDKVKKTLITGKNGAGKSTMLEALTF 49 (562)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 456667778999999999999999999873
No 475
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.23 E-value=8.4e-07 Score=62.80 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=28.7
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~ 70 (127)
.++.+++|.|+||||||||.+.|.+... -..+.+++++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCc
Confidence 4677999999999999999999998531 11244555543
No 476
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.23 E-value=6.3e-07 Score=67.07 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+++++++...++.+++|+|++|||||||++.+..
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 458899999999999999999999999999999887
No 477
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.23 E-value=1.4e-06 Score=74.55 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=20.6
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHH
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAF 52 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i 52 (127)
++.+. +.+++|+|||||||||||.+|
T Consensus 18 ~i~f~-~~~~~i~G~NGsGKS~ll~ai 43 (1179)
T TIGR02168 18 TINFD-KGITGIVGPNGCGKSNIVDAI 43 (1179)
T ss_pred eEEec-CCcEEEECCCCCChhHHHHHH
Confidence 44444 459999999999999999663
No 478
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=1.6e-06 Score=74.41 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=32.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
-|+++|+-- |.+.+. |+|+-.+ .+++|+|||||||||+|.+|+
T Consensus 5 ~L~l~nf~s-~~~~~~---idF~~~~-gl~~I~G~nGaGKSTildAI~ 47 (1042)
T TIGR00618 5 RLTLKNFGS-YKGTHT---IDFTALG-PIFLICGKTGAGKTTLLDAIT 47 (1042)
T ss_pred EEEEeCeec-cCCCce---eeecCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 378888764 555432 4555433 899999999999999999999
No 479
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.20 E-value=3.1e-06 Score=66.36 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=31.8
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
=|.-|++.+|++++|+|+||+|||||+++|++...
T Consensus 149 ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 149 LNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred EeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 36789999999999999999999999999999643
No 480
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.20 E-value=1.7e-06 Score=59.42 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.9
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++.+++++|++|+|||||+|.|.+.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3499999999999999999999995
No 481
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.19 E-value=1.3e-06 Score=59.37 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=+++|+|+||||||||++.+.+.
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcC
Confidence 35999999999999999999994
No 482
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.19 E-value=4.2e-06 Score=62.33 Aligned_cols=33 Identities=39% Similarity=0.456 Sum_probs=27.0
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++...+. +.+++++|+||+|||||+|.|.|.
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhch
Confidence 445555555 589999999999999999999984
No 483
>PRK00098 GTPase RsgA; Reviewed
Probab=98.18 E-value=4.8e-06 Score=62.30 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=23.4
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.|.+++++|+||+|||||+|.|.|.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999984
No 484
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.18 E-value=2e-06 Score=75.75 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.8
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.+..|++.+| +++|+|+|||||||+|++|++.
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~ 50 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 50 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHcc
Confidence 45668888875 9999999999999999999983
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.18 E-value=1.3e-06 Score=57.75 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHhcC
Q psy18211 35 VYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 35 i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|+|++|||||||++.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999985
No 486
>PRK02224 chromosome segregation protein; Provisional
Probab=98.17 E-value=2.2e-06 Score=72.12 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
|.++|+- .| .+.++++.+| +++|+|||||||||+|.+|+
T Consensus 6 l~l~nf~-~~------~~~~~~f~~g-~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 6 VRLENFK-CY------ADADLRLEDG-VTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred EEEECcc-cc------cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 5566652 33 3345666664 99999999999999999974
No 487
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.15 E-value=2.2e-06 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.7
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+..+.|+||+|+||||+++.++..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhc
Confidence 3678999999999999999999984
No 488
>PRK09183 transposase/IS protein; Provisional
Probab=98.15 E-value=1.5e-06 Score=63.87 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.|.+++| ++.|+.+.|+||+|+|||+|..+|+.
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4667788 99999999999999999999999965
No 489
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.14 E-value=1.9e-06 Score=55.28 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.|++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999984
No 490
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.14 E-value=4.4e-06 Score=64.26 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=29.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..-++++++++.+| +.+|+||||+||||++.+|..
T Consensus 11 FR~~~~~~l~~~~~-~nvi~G~NGsGKT~lLeAi~~ 45 (365)
T TIGR00611 11 FRNYDAVDLELSPG-VNVIVGPNGQGKTNLLEAIYY 45 (365)
T ss_pred CcceeeeEEEECCC-eEEEECCCCCCHHHHHHHHHH
Confidence 33567888888877 789999999999999999974
No 491
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.14 E-value=2.4e-06 Score=56.93 Aligned_cols=28 Identities=36% Similarity=0.393 Sum_probs=25.5
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++|++++|.|+.|||||||.|.++..
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3588999999999999999999999873
No 492
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.13 E-value=3.2e-06 Score=60.09 Aligned_cols=30 Identities=33% Similarity=0.440 Sum_probs=24.2
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+...+.+. ...+.|+||||+||||++.+|.
T Consensus 16 ~~~~~~~~-~~~~~i~G~NGsGKS~ileAi~ 45 (220)
T PF02463_consen 16 KNAELSFS-PGLNVIVGPNGSGKSNILEAIE 45 (220)
T ss_dssp CEEEEETT-SSEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEecC-CCCEEEEcCCCCCHHHHHHHHH
Confidence 45555554 3599999999999999999993
No 493
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.13 E-value=2e-06 Score=65.98 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=24.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++..+.|+||+||||||+++.|++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~ 157 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRE 157 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999999873
No 494
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.12 E-value=2.1e-06 Score=72.68 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.2
Q ss_pred eceeE-eecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 24 SADLV-LSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 24 ~vs~~-i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++ +....+++|+|||||||||+|.+|+=
T Consensus 16 ~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ 47 (908)
T COG0419 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITF 47 (908)
T ss_pred ccceeecCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 66666 45667999999999999999999974
No 495
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=1.9e-06 Score=65.09 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=23.7
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++++++||||+||||++..|++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999999999999998
No 496
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.11 E-value=2.4e-06 Score=60.05 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+||+|||||+|.|+|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~ 24 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999994
No 497
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.10 E-value=2.5e-06 Score=54.95 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|+|.|++||||||+.+.|+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 498
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.10 E-value=2.1e-06 Score=63.55 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++||+|+||||||||++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~l 22 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSL 22 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999985
No 499
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.09 E-value=3.3e-06 Score=62.48 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.-++|+||||||||||+++|+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc
Confidence 468999999999999999999953
No 500
>PRK01889 GTPase RsgA; Reviewed
Probab=98.08 E-value=2.9e-06 Score=65.00 Aligned_cols=35 Identities=40% Similarity=0.468 Sum_probs=30.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-++.+.-.+.+|++++|+|+||+|||||++.|+|.
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHh
Confidence 35666667889999999999999999999999994
Done!