Query psy18211
Match_columns 127
No_of_seqs 162 out of 1037
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 16:36:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 2.9E-35 1E-39 222.5 10.4 121 6-127 4-155 (359)
2 3rlf_A Maltose/maltodextrin im 100.0 6.6E-35 2.3E-39 221.9 11.2 122 5-126 2-149 (381)
3 2pcj_A ABC transporter, lipopr 100.0 2.6E-34 9.1E-39 205.1 12.5 123 5-127 3-157 (224)
4 3tui_C Methionine import ATP-b 100.0 3.1E-34 1.1E-38 217.2 12.6 124 4-127 22-180 (366)
5 4g1u_C Hemin import ATP-bindin 100.0 1.9E-34 6.7E-39 210.6 11.1 123 4-126 9-157 (266)
6 1ji0_A ABC transporter; ATP bi 100.0 4.7E-34 1.6E-38 205.6 12.6 126 1-127 1-156 (240)
7 3gfo_A Cobalt import ATP-bindi 100.0 4.9E-34 1.7E-38 209.3 12.8 123 5-127 6-160 (275)
8 3tif_A Uncharacterized ABC tra 100.0 2.6E-34 8.7E-39 206.5 10.6 122 6-127 1-162 (235)
9 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-34 2.3E-38 206.7 12.2 124 4-127 13-163 (256)
10 2yyz_A Sugar ABC transporter, 100.0 4E-34 1.4E-38 216.4 11.0 122 6-127 3-150 (359)
11 2it1_A 362AA long hypothetical 100.0 5.8E-34 2E-38 215.7 11.8 122 6-127 3-150 (362)
12 1z47_A CYSA, putative ABC-tran 100.0 7.9E-34 2.7E-38 214.5 12.5 123 5-127 13-162 (355)
13 2olj_A Amino acid ABC transpor 100.0 8.2E-34 2.8E-38 207.0 12.0 123 5-127 23-176 (263)
14 2nq2_C Hypothetical ABC transp 100.0 1.1E-33 3.8E-38 205.2 12.3 122 6-127 4-145 (253)
15 1v43_A Sugar-binding transport 100.0 6.9E-34 2.3E-38 216.0 11.6 123 5-127 10-158 (372)
16 1b0u_A Histidine permease; ABC 100.0 7.3E-34 2.5E-38 207.1 11.2 123 5-127 5-170 (262)
17 1g6h_A High-affinity branched- 100.0 1E-33 3.5E-38 205.7 10.4 124 4-127 5-170 (257)
18 3d31_A Sulfate/molybdate ABC t 100.0 1.2E-33 4.1E-38 213.1 10.7 121 6-127 1-144 (348)
19 1g29_1 MALK, maltose transport 100.0 2.8E-33 9.5E-38 212.7 12.4 122 6-127 3-156 (372)
20 2d2e_A SUFC protein; ABC-ATPas 100.0 3.9E-33 1.3E-37 201.9 12.1 121 6-126 3-159 (250)
21 1sgw_A Putative ABC transporte 100.0 2.3E-33 7.8E-38 199.2 10.7 122 5-127 9-150 (214)
22 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-33 5.2E-38 212.9 9.7 122 6-127 3-157 (353)
23 2ihy_A ABC transporter, ATP-bi 100.0 6.3E-33 2.2E-37 203.8 8.4 123 5-127 20-178 (279)
24 2pze_A Cystic fibrosis transme 100.0 3.1E-32 1.1E-36 194.9 11.8 121 6-127 6-147 (229)
25 2cbz_A Multidrug resistance-as 100.0 3E-32 1E-36 196.0 11.4 120 6-126 3-143 (237)
26 2zu0_C Probable ATP-dependent 100.0 4.5E-32 1.5E-36 198.1 12.2 122 5-126 19-180 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 2.7E-32 9.1E-37 197.3 10.5 121 6-127 7-162 (247)
28 3nh6_A ATP-binding cassette SU 100.0 1.2E-32 4.1E-37 204.6 8.7 121 6-127 53-207 (306)
29 1mv5_A LMRA, multidrug resista 100.0 1.3E-32 4.4E-37 198.4 7.6 120 6-126 1-155 (243)
30 2yz2_A Putative ABC transporte 100.0 6.6E-32 2.2E-36 197.1 10.8 122 6-127 2-155 (266)
31 2onk_A Molybdate/tungstate ABC 100.0 6.5E-32 2.2E-36 194.6 10.5 119 6-127 1-143 (240)
32 2ixe_A Antigen peptide transpo 100.0 1.9E-31 6.5E-36 195.2 12.1 122 5-127 15-173 (271)
33 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-31 4.4E-36 194.0 10.5 116 6-126 4-142 (249)
34 2ghi_A Transport protein; mult 100.0 1.2E-31 4E-36 195.2 9.5 121 5-126 16-171 (260)
35 2pjz_A Hypothetical protein ST 100.0 1.7E-31 5.9E-36 194.7 9.1 119 6-127 1-145 (263)
36 3gd7_A Fusion complex of cysti 100.0 3E-31 1E-35 202.5 10.3 120 6-127 19-172 (390)
37 3b5x_A Lipid A export ATP-bind 100.0 7.9E-30 2.7E-34 202.9 10.1 121 6-127 341-497 (582)
38 3b60_A Lipid A export ATP-bind 100.0 8.7E-30 3E-34 202.6 9.6 121 6-127 341-497 (582)
39 3qf4_A ABC transporter, ATP-bi 100.0 1E-29 3.5E-34 202.5 8.9 121 6-127 341-496 (587)
40 4a82_A Cystic fibrosis transme 100.0 9.4E-30 3.2E-34 202.3 8.2 121 6-127 339-494 (578)
41 2bbs_A Cystic fibrosis transme 100.0 5.4E-29 1.9E-33 183.7 10.1 119 5-127 39-176 (290)
42 2yl4_A ATP-binding cassette SU 100.0 3.2E-29 1.1E-33 199.8 9.5 120 7-127 342-500 (595)
43 3qf4_B Uncharacterized ABC tra 100.0 2.1E-29 7.1E-34 201.1 7.4 121 6-127 354-508 (598)
44 4f4c_A Multidrug resistance pr 100.0 1.2E-28 4.1E-33 210.2 8.4 121 6-127 1076-1234(1321)
45 4f4c_A Multidrug resistance pr 99.9 1.1E-27 3.8E-32 204.3 10.6 121 6-127 415-571 (1321)
46 3g5u_A MCG1178, multidrug resi 99.9 2.4E-27 8.1E-32 201.8 10.9 121 6-127 387-543 (1284)
47 3bk7_A ABC transporter ATP-bin 99.9 4E-27 1.4E-31 188.2 11.0 121 5-127 356-488 (607)
48 1yqt_A RNAse L inhibitor; ATP- 99.9 8.9E-27 3E-31 184.1 11.5 122 5-127 286-418 (538)
49 3ozx_A RNAse L inhibitor; ATP 99.9 1.3E-26 4.6E-31 183.1 8.7 121 5-127 268-402 (538)
50 3g5u_A MCG1178, multidrug resi 99.9 1.6E-26 5.5E-31 196.7 9.2 121 6-127 1030-1188(1284)
51 2iw3_A Elongation factor 3A; a 99.9 1.9E-25 6.6E-30 185.3 8.2 122 6-127 435-565 (986)
52 2iw3_A Elongation factor 3A; a 99.9 3.6E-25 1.2E-29 183.7 9.0 66 5-70 670-745 (986)
53 3bk7_A ABC transporter ATP-bin 99.9 5E-25 1.7E-29 176.1 7.7 120 6-127 83-245 (607)
54 1yqt_A RNAse L inhibitor; ATP- 99.9 8.9E-25 3.1E-29 172.6 7.4 119 7-127 21-175 (538)
55 3j16_B RLI1P; ribosome recycli 99.9 1.7E-24 5.9E-29 173.0 8.0 117 10-127 350-484 (608)
56 3ux8_A Excinuclease ABC, A sub 99.9 2.8E-23 9.7E-28 167.4 4.6 32 18-49 30-61 (670)
57 2v9p_A Replication protein E1; 99.9 9.2E-25 3.1E-29 162.1 -7.9 111 6-127 101-214 (305)
58 3ux8_A Excinuclease ABC, A sub 99.8 9.7E-22 3.3E-26 158.5 5.9 36 18-53 334-369 (670)
59 3j16_B RLI1P; ribosome recycli 99.8 5.8E-21 2E-25 152.7 9.8 48 10-58 81-129 (608)
60 3ozx_A RNAse L inhibitor; ATP 99.8 6.3E-21 2.2E-25 150.7 6.8 116 10-127 3-155 (538)
61 2npi_A Protein CLP1; CLP1-PCF1 99.8 4.5E-24 1.5E-28 165.9 -12.1 114 4-126 116-253 (460)
62 3aez_A Pantothenate kinase; tr 99.8 1.6E-22 5.5E-27 150.4 -6.9 118 6-126 43-192 (312)
63 3pih_A Uvrabc system protein A 99.8 2.2E-18 7.7E-23 142.7 9.8 32 18-49 596-627 (916)
64 2jeo_A Uridine-cytidine kinase 99.8 4.2E-19 1.5E-23 127.3 4.7 105 16-121 9-127 (245)
65 2vf7_A UVRA2, excinuclease ABC 99.7 1.3E-18 4.6E-23 143.0 6.8 45 5-54 501-546 (842)
66 2ygr_A Uvrabc system protein A 99.7 3.8E-18 1.3E-22 141.7 9.1 44 5-53 646-689 (993)
67 2r6f_A Excinuclease ABC subuni 99.7 2.4E-18 8.2E-23 142.5 7.3 44 5-53 628-671 (972)
68 4gp7_A Metallophosphoesterase; 99.7 1.7E-18 5.8E-23 118.2 5.1 96 24-126 1-99 (171)
69 3b85_A Phosphate starvation-in 99.7 2.8E-20 9.6E-25 131.2 -3.9 38 14-55 8-45 (208)
70 1z6g_A Guanylate kinase; struc 99.7 8.9E-20 3.1E-24 129.1 -3.3 39 18-56 9-47 (218)
71 3sop_A Neuronal-specific septi 99.7 1.3E-19 4.5E-24 132.3 -2.8 92 34-126 4-114 (270)
72 1tq4_A IIGP1, interferon-induc 99.7 3.8E-19 1.3E-23 136.6 -3.0 104 19-126 36-172 (413)
73 1htw_A HI0065; nucleotide-bind 99.7 3.4E-19 1.2E-23 120.8 -3.1 77 7-84 8-97 (158)
74 2dpy_A FLII, flagellum-specifi 99.7 1.1E-18 3.7E-23 135.0 -3.0 110 5-122 130-269 (438)
75 4aby_A DNA repair protein RECN 99.7 4.1E-17 1.4E-21 124.3 5.2 36 18-54 47-82 (415)
76 2qnr_A Septin-2, protein NEDD5 99.6 2.7E-18 9.3E-23 126.9 -4.1 107 10-125 2-128 (301)
77 3b9q_A Chloroplast SRP recepto 99.6 1.3E-18 4.6E-23 128.8 -5.7 107 16-126 84-217 (302)
78 2obl_A ESCN; ATPase, hydrolase 99.6 6.1E-17 2.1E-21 121.9 1.1 60 5-65 44-104 (347)
79 2og2_A Putative signal recogni 99.6 4.1E-17 1.4E-21 123.4 -3.3 100 23-126 148-274 (359)
80 1ye8_A Protein THEP1, hypothet 99.5 5.8E-17 2E-21 111.6 -4.0 74 34-124 2-90 (178)
81 2qag_C Septin-7; cell cycle, c 99.5 3E-16 1E-20 120.7 -0.7 110 5-126 10-134 (418)
82 2pt7_A CAG-ALFA; ATPase, prote 99.5 5.3E-16 1.8E-20 116.0 -0.3 38 21-58 160-197 (330)
83 1p9r_A General secretion pathw 99.5 1.4E-16 4.8E-21 122.5 -4.0 47 6-54 143-189 (418)
84 1tf7_A KAIC; homohexamer, hexa 99.5 3E-17 1E-21 129.2 -8.1 50 5-54 11-63 (525)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.5 2.9E-14 9.9E-19 107.8 8.2 33 20-53 12-44 (365)
86 2qag_B Septin-6, protein NEDD5 99.5 7.8E-16 2.7E-20 118.5 -0.9 76 6-83 16-104 (427)
87 3asz_A Uridine kinase; cytidin 99.5 4.3E-15 1.5E-19 103.6 2.8 94 29-126 3-109 (211)
88 1e69_A Chromosome segregation 99.5 6.1E-15 2.1E-19 109.6 1.0 40 7-53 6-45 (322)
89 1zp6_A Hypothetical protein AT 99.4 2E-14 6.7E-19 98.6 2.2 28 28-55 5-32 (191)
90 2rcn_A Probable GTPase ENGC; Y 99.4 1.3E-14 4.6E-19 109.5 1.3 105 21-127 205-330 (358)
91 1znw_A Guanylate kinase, GMP k 99.4 7.3E-15 2.5E-19 102.6 -1.4 52 19-72 9-75 (207)
92 1rj9_A FTSY, signal recognitio 99.4 1.3E-14 4.3E-19 107.5 -2.1 87 31-126 101-218 (304)
93 2f1r_A Molybdopterin-guanine d 99.4 2.7E-14 9.1E-19 97.8 -2.1 23 33-55 3-25 (171)
94 2qm8_A GTPase/ATPase; G protei 99.4 6.8E-15 2.3E-19 110.3 -5.5 49 6-54 29-77 (337)
95 3nwj_A ATSK2; P loop, shikimat 99.3 6E-14 2E-18 101.3 -0.5 50 5-54 16-70 (250)
96 1tf7_A KAIC; homohexamer, hexa 99.3 5.2E-14 1.8E-18 110.7 -1.1 109 7-126 258-369 (525)
97 2gza_A Type IV secretion syste 99.3 1.2E-13 4.1E-18 104.3 0.4 79 8-86 137-249 (361)
98 2x8a_A Nuclear valosin-contain 99.3 1.1E-15 3.7E-20 111.5 -11.2 38 17-56 31-68 (274)
99 1iy2_A ATP-dependent metallopr 99.3 1.6E-15 5.5E-20 110.2 -10.4 46 8-55 51-96 (278)
100 1sq5_A Pantothenate kinase; P- 99.3 3E-14 1E-18 105.4 -3.8 48 6-55 37-103 (308)
101 1pui_A ENGB, probable GTP-bind 99.3 2E-13 7E-18 94.4 0.5 48 6-56 3-50 (210)
102 2yv5_A YJEQ protein; hydrolase 99.3 1.7E-13 5.9E-18 101.2 0.0 95 27-123 160-300 (302)
103 1ixz_A ATP-dependent metallopr 99.3 2.6E-15 8.9E-20 107.6 -10.6 46 8-55 27-72 (254)
104 3c8u_A Fructokinase; YP_612366 99.3 4E-13 1.4E-17 93.8 0.5 42 29-70 19-60 (208)
105 1ewq_A DNA mismatch repair pro 99.3 2E-12 7E-17 105.7 4.4 35 18-55 565-599 (765)
106 1in4_A RUVB, holliday junction 99.3 5.4E-14 1.9E-18 104.9 -4.9 50 6-55 18-74 (334)
107 2yhs_A FTSY, cell division pro 99.2 3.9E-12 1.3E-16 99.5 4.3 65 22-86 283-372 (503)
108 3lnc_A Guanylate kinase, GMP k 99.2 2.3E-12 7.9E-17 91.1 2.5 38 19-56 14-52 (231)
109 3euj_A Chromosome partition pr 99.2 6E-12 2E-16 98.3 4.9 43 9-54 9-51 (483)
110 2eyu_A Twitching motility prot 99.2 1.5E-12 5E-17 94.5 0.9 44 6-55 5-48 (261)
111 2o8b_B DNA mismatch repair pro 99.2 9.1E-12 3.1E-16 104.5 5.0 64 5-70 749-826 (1022)
112 2ehv_A Hypothetical protein PH 99.2 6.2E-12 2.1E-16 89.0 3.1 51 1-54 1-52 (251)
113 3tr0_A Guanylate kinase, GMP k 99.2 1.2E-11 4.2E-16 85.3 3.4 30 26-55 1-30 (205)
114 1odf_A YGR205W, hypothetical 3 99.1 1.1E-11 3.9E-16 91.1 1.3 93 30-123 29-147 (290)
115 3thx_A DNA mismatch repair pro 99.1 1.6E-11 5.4E-16 102.2 2.1 35 19-53 649-683 (934)
116 3szr_A Interferon-induced GTP- 99.1 4.7E-12 1.6E-16 101.3 -1.1 77 6-85 10-121 (608)
117 3kta_A Chromosome segregation 99.1 1.4E-10 4.7E-15 78.8 4.8 33 21-54 14-48 (182)
118 3e70_C DPA, signal recognition 99.0 2.4E-10 8.3E-15 85.3 5.0 58 28-85 125-207 (328)
119 1cr0_A DNA primase/helicase; R 99.0 7.1E-11 2.4E-15 86.2 2.0 38 18-55 21-58 (296)
120 3uie_A Adenylyl-sulfate kinase 99.0 4.8E-11 1.7E-15 82.6 0.8 46 10-55 3-48 (200)
121 3thx_B DNA mismatch repair pro 99.0 1.1E-10 3.8E-15 97.1 2.9 37 18-54 659-695 (918)
122 1wb9_A DNA mismatch repair pro 99.0 2.2E-10 7.5E-15 94.2 4.4 37 17-54 593-629 (800)
123 4a74_A DNA repair and recombin 99.0 2.4E-10 8.1E-15 79.8 3.1 45 7-54 2-47 (231)
124 1s96_A Guanylate kinase, GMP k 99.0 2.7E-10 9.4E-15 80.5 3.4 31 27-57 11-41 (219)
125 2o5v_A DNA replication and rep 99.0 4.7E-10 1.6E-14 84.7 4.8 44 8-54 5-48 (359)
126 1lvg_A Guanylate kinase, GMP k 98.9 3.1E-10 1.1E-14 78.7 3.0 26 30-55 2-27 (198)
127 1nij_A Hypothetical protein YJ 98.9 1.2E-11 4.1E-16 91.8 -4.7 24 33-56 5-28 (318)
128 3vaa_A Shikimate kinase, SK; s 98.9 4.8E-10 1.6E-14 77.5 3.4 37 18-54 11-47 (199)
129 1t9h_A YLOQ, probable GTPase E 98.9 2.3E-10 8E-15 84.8 1.6 55 27-82 168-247 (307)
130 1lw7_A Transcriptional regulat 98.9 2.3E-10 8E-15 86.1 1.2 38 22-59 158-197 (365)
131 2bdt_A BH3686; alpha-beta prot 98.9 5E-10 1.7E-14 76.5 2.2 24 32-55 2-25 (189)
132 2j41_A Guanylate kinase; GMP, 98.9 9E-10 3.1E-14 75.8 3.4 30 27-56 1-30 (207)
133 1qhl_A Protein (cell division 98.9 3.5E-11 1.2E-15 85.7 -3.9 41 6-54 9-49 (227)
134 3a00_A Guanylate kinase, GMP k 98.9 9.6E-10 3.3E-14 75.3 3.0 25 32-56 1-25 (186)
135 2i3b_A HCR-ntpase, human cance 98.9 1.1E-09 3.9E-14 75.8 3.1 24 32-55 1-24 (189)
136 1nlf_A Regulatory protein REPA 98.8 3.9E-09 1.3E-13 76.4 5.8 50 1-54 1-52 (279)
137 3jvv_A Twitching mobility prot 98.8 1.4E-09 4.7E-14 82.1 3.0 45 11-55 93-146 (356)
138 2w0m_A SSO2452; RECA, SSPF, un 98.8 1.1E-09 3.9E-14 76.2 2.1 38 18-55 8-46 (235)
139 4eun_A Thermoresistant glucoki 98.8 2.3E-09 7.8E-14 74.1 3.4 42 19-60 16-58 (200)
140 1w1w_A Structural maintenance 98.8 2E-09 6.7E-14 82.6 3.3 43 6-54 6-48 (430)
141 2oap_1 GSPE-2, type II secreti 98.8 6.1E-10 2.1E-14 87.6 0.2 36 20-55 248-283 (511)
142 1kgd_A CASK, peripheral plasma 98.8 2.9E-09 9.9E-14 72.6 3.5 26 30-55 3-28 (180)
143 2bbw_A Adenylate kinase 4, AK4 98.8 2.4E-09 8.3E-14 76.2 2.8 29 31-59 26-57 (246)
144 1udx_A The GTP-binding protein 98.8 3E-09 1E-13 81.7 3.3 35 21-55 146-180 (416)
145 1svm_A Large T antigen; AAA+ f 98.8 1.3E-09 4.3E-14 82.9 1.2 36 20-55 157-192 (377)
146 1u0l_A Probable GTPase ENGC; p 98.7 2.7E-09 9.1E-14 78.5 2.2 29 27-55 164-192 (301)
147 3ec2_A DNA replication protein 98.7 2.8E-09 9.7E-14 72.3 2.1 30 26-55 32-61 (180)
148 2ewv_A Twitching motility prot 98.7 2.5E-09 8.4E-14 81.0 1.8 32 21-54 127-158 (372)
149 3tqc_A Pantothenate kinase; bi 98.7 2.4E-10 8.3E-15 85.1 -4.5 59 12-70 66-132 (321)
150 1vma_A Cell division protein F 98.7 1.5E-08 5.2E-13 74.9 4.7 32 24-55 96-127 (306)
151 4e22_A Cytidylate kinase; P-lo 98.7 8.9E-09 3E-13 73.8 3.3 35 16-53 14-48 (252)
152 3tau_A Guanylate kinase, GMP k 98.7 1.2E-08 4.1E-13 71.0 3.4 27 30-56 6-32 (208)
153 2vp4_A Deoxynucleoside kinase; 98.7 5.1E-09 1.8E-13 74.0 1.5 32 24-55 12-43 (230)
154 2p67_A LAO/AO transport system 98.7 4.3E-10 1.5E-14 84.1 -4.4 49 6-54 30-78 (341)
155 1f2t_A RAD50 ABC-ATPase; DNA d 98.6 3.8E-08 1.3E-12 65.4 4.7 30 23-53 15-44 (149)
156 3ice_A Transcription terminati 98.6 1.5E-08 5E-13 77.4 2.7 49 6-54 133-196 (422)
157 1ls1_A Signal recognition part 98.6 4.6E-09 1.6E-13 77.2 -0.3 45 7-55 77-121 (295)
158 2kjq_A DNAA-related protein; s 98.6 2.1E-08 7.1E-13 66.7 2.4 25 31-55 35-59 (149)
159 1n0w_A DNA repair protein RAD5 98.6 3.8E-08 1.3E-12 69.1 3.8 27 28-54 20-46 (243)
160 1knq_A Gluconate kinase; ALFA/ 98.6 2.6E-08 8.9E-13 67.0 2.7 26 30-55 6-31 (175)
161 3ney_A 55 kDa erythrocyte memb 98.5 4.1E-08 1.4E-12 68.4 3.4 30 26-55 13-42 (197)
162 1kag_A SKI, shikimate kinase I 98.5 4E-08 1.4E-12 65.8 3.2 25 31-55 3-27 (173)
163 2cvh_A DNA repair and recombin 98.5 7.9E-08 2.7E-12 66.5 3.4 35 20-54 7-42 (220)
164 1pzn_A RAD51, DNA repair and r 98.5 5.2E-08 1.8E-12 73.1 2.3 37 20-56 118-155 (349)
165 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 6.1E-08 2.1E-12 73.9 2.5 27 28-54 16-42 (392)
166 1zu4_A FTSY; GTPase, signal re 98.4 6.1E-08 2.1E-12 72.1 2.3 33 22-54 95-127 (320)
167 1rz3_A Hypothetical protein rb 98.4 7.5E-08 2.6E-12 66.6 2.6 28 28-55 18-45 (201)
168 2qt1_A Nicotinamide riboside k 98.4 8.2E-08 2.8E-12 66.3 2.6 31 25-55 14-44 (207)
169 3qkt_A DNA double-strand break 98.4 1.8E-07 6.2E-12 69.7 4.0 31 23-54 15-45 (339)
170 3qks_A DNA double-strand break 98.4 2.6E-07 9.1E-12 64.2 4.5 30 23-53 15-44 (203)
171 1jjv_A Dephospho-COA kinase; P 98.4 2.3E-07 8E-12 63.9 4.1 27 34-60 4-30 (206)
172 3k1j_A LON protease, ATP-depen 98.4 2.3E-08 7.8E-13 79.8 -1.2 49 10-58 38-86 (604)
173 3t34_A Dynamin-related protein 98.4 6.6E-08 2.3E-12 72.5 1.1 44 9-55 11-57 (360)
174 4ad8_A DNA repair protein RECN 98.4 8.2E-08 2.8E-12 75.3 1.5 35 19-54 48-82 (517)
175 1oix_A RAS-related protein RAB 98.4 1.7E-07 5.7E-12 64.0 2.8 22 34-55 31-52 (191)
176 2f9l_A RAB11B, member RAS onco 98.4 2.1E-07 7E-12 63.7 3.1 22 34-55 7-28 (199)
177 2dhr_A FTSH; AAA+ protein, hex 98.3 3E-08 1E-12 77.8 -2.0 45 9-55 43-87 (499)
178 4eaq_A DTMP kinase, thymidylat 98.3 2.8E-07 9.5E-12 65.3 3.2 35 21-55 12-49 (229)
179 3m6a_A ATP-dependent protease 98.3 2E-08 6.9E-13 79.4 -3.1 45 10-55 87-131 (543)
180 2qag_A Septin-2, protein NEDD5 98.3 4.1E-08 1.4E-12 74.0 -1.3 44 6-55 17-60 (361)
181 3cr8_A Sulfate adenylyltranfer 98.3 1.2E-07 4.1E-12 75.2 1.2 28 28-55 365-392 (552)
182 1y63_A LMAJ004144AAA protein; 98.3 3.4E-07 1.2E-11 62.3 3.3 32 24-55 2-33 (184)
183 3hr8_A Protein RECA; alpha and 98.3 7.6E-07 2.6E-11 67.1 5.3 28 28-55 57-84 (356)
184 2gj8_A MNME, tRNA modification 98.3 3.2E-07 1.1E-11 61.6 2.9 26 30-55 2-27 (172)
185 1cke_A CK, MSSA, protein (cyti 98.3 3.7E-07 1.3E-11 63.5 3.3 24 32-55 5-28 (227)
186 1sxj_C Activator 1 40 kDa subu 98.3 4.2E-08 1.4E-12 72.8 -1.8 47 9-55 21-69 (340)
187 2pez_A Bifunctional 3'-phospho 98.3 4.2E-07 1.4E-11 61.3 3.1 26 30-55 3-28 (179)
188 1f6b_A SAR1; gtpases, N-termin 98.2 1.1E-07 3.7E-12 65.3 -0.3 40 14-54 7-47 (198)
189 2if2_A Dephospho-COA kinase; a 98.2 5.1E-07 1.7E-11 62.0 2.8 23 34-56 3-25 (204)
190 3auy_A DNA double-strand break 98.2 1.3E-06 4.6E-11 65.7 4.9 32 21-53 15-46 (371)
191 1m2o_B GTP-binding protein SAR 98.2 6.7E-07 2.3E-11 60.8 2.9 34 20-54 12-45 (190)
192 2www_A Methylmalonic aciduria 98.2 7.1E-07 2.4E-11 66.9 3.1 25 30-54 72-96 (349)
193 1ega_A Protein (GTP-binding pr 98.2 5.1E-07 1.7E-11 66.3 2.2 25 31-55 7-31 (301)
194 2qor_A Guanylate kinase; phosp 98.2 8.8E-07 3E-11 61.1 3.3 28 28-55 8-35 (204)
195 2px0_A Flagellar biosynthesis 98.2 7.6E-07 2.6E-11 65.4 3.1 41 30-70 103-144 (296)
196 2ffh_A Protein (FFH); SRP54, s 98.2 2.9E-07 9.8E-12 70.9 0.8 42 10-55 80-121 (425)
197 1j8m_F SRP54, signal recogniti 98.2 1.8E-07 6E-12 68.9 -0.5 43 10-55 78-121 (297)
198 2dr3_A UPF0273 protein PH0284; 98.2 7.3E-07 2.5E-11 62.5 2.6 36 18-53 8-44 (247)
199 2wji_A Ferrous iron transport 98.2 1.1E-06 3.8E-11 58.3 3.3 22 34-55 5-26 (165)
200 3lda_A DNA repair protein RAD5 98.1 1.3E-06 4.4E-11 66.8 3.7 27 27-53 173-199 (400)
201 2ga8_A Hypothetical 39.9 kDa p 98.1 3.8E-07 1.3E-11 68.8 0.4 35 20-54 10-46 (359)
202 2wjg_A FEOB, ferrous iron tran 98.1 2.3E-06 7.7E-11 57.5 3.3 22 34-55 9-30 (188)
203 2yvu_A Probable adenylyl-sulfa 98.1 1.8E-06 6E-11 58.6 2.6 28 27-54 8-35 (186)
204 2zej_A Dardarin, leucine-rich 98.1 2.5E-06 8.6E-11 57.5 3.4 22 34-55 4-25 (184)
205 3t61_A Gluconokinase; PSI-biol 98.0 2.1E-06 7.2E-11 58.9 2.8 24 32-55 18-41 (202)
206 3cm0_A Adenylate kinase; ATP-b 98.0 2.6E-06 8.8E-11 57.5 2.8 25 30-54 2-26 (186)
207 1q3t_A Cytidylate kinase; nucl 98.0 3.3E-06 1.1E-10 59.5 3.4 27 28-54 12-38 (236)
208 1m7g_A Adenylylsulfate kinase; 98.0 2.7E-06 9.3E-11 58.9 2.6 29 27-55 20-48 (211)
209 1lv7_A FTSH; alpha/beta domain 97.9 3.2E-06 1.1E-10 60.1 2.3 32 22-55 37-68 (257)
210 2ohf_A Protein OLA1, GTP-bindi 97.9 4.4E-06 1.5E-10 63.8 3.1 28 28-55 18-45 (396)
211 3lxx_A GTPase IMAP family memb 97.9 5.9E-06 2E-10 58.1 3.4 22 34-55 31-52 (239)
212 2vf7_A UVRA2, excinuclease ABC 97.9 1.3E-05 4.3E-10 66.4 5.5 38 12-49 16-53 (842)
213 3kb2_A SPBC2 prophage-derived 97.9 6.5E-06 2.2E-10 54.5 3.2 21 34-54 3-23 (173)
214 1mky_A Probable GTP-binding pr 97.9 6.6E-06 2.3E-10 63.2 3.3 23 34-56 182-204 (439)
215 3k53_A Ferrous iron transport 97.9 7.1E-06 2.4E-10 59.0 3.0 22 34-55 5-26 (271)
216 1vht_A Dephospho-COA kinase; s 97.8 1.3E-05 4.6E-10 55.5 4.1 27 32-58 4-30 (218)
217 1qhx_A CPT, protein (chloramph 97.8 1.2E-05 4.2E-10 53.7 3.7 23 32-54 3-25 (178)
218 1np6_A Molybdopterin-guanine d 97.8 1E-05 3.4E-10 55.1 3.2 23 33-55 7-29 (174)
219 1ypw_A Transitional endoplasmi 97.8 6.3E-06 2.1E-10 67.9 2.5 31 26-56 232-262 (806)
220 3lw7_A Adenylate kinase relate 97.8 1.1E-05 3.7E-10 53.3 3.2 19 34-52 3-21 (179)
221 2qtf_A Protein HFLX, GTP-bindi 97.8 9.1E-06 3.1E-10 61.3 3.1 25 31-55 177-202 (364)
222 2r6f_A Excinuclease ABC subuni 97.8 2E-05 6.7E-10 66.0 5.2 40 10-49 22-61 (972)
223 3pih_A Uvrabc system protein A 97.8 1.5E-05 5.2E-10 66.5 4.6 32 18-49 10-41 (916)
224 2p5t_B PEZT; postsegregational 97.8 4E-06 1.4E-10 59.8 0.9 28 28-55 28-55 (253)
225 2ygr_A Uvrabc system protein A 97.8 2.1E-05 7.2E-10 66.0 5.2 32 18-49 32-63 (993)
226 1kht_A Adenylate kinase; phosp 97.8 1.4E-05 4.8E-10 53.8 3.5 23 32-54 3-25 (192)
227 2dy1_A Elongation factor G; tr 97.8 6.5E-06 2.2E-10 66.5 2.1 29 26-54 3-31 (665)
228 2jaq_A Deoxyguanosine kinase; 97.8 1.3E-05 4.4E-10 54.5 3.3 21 34-54 2-22 (205)
229 2ce7_A Cell division protein F 97.8 9.8E-07 3.4E-11 68.8 -2.8 35 19-55 38-72 (476)
230 1via_A Shikimate kinase; struc 97.8 1.3E-05 4.3E-10 53.8 3.0 21 34-54 6-26 (175)
231 2rhm_A Putative kinase; P-loop 97.8 1.2E-05 4.2E-10 54.2 2.8 25 30-54 3-27 (193)
232 3b1v_A Ferrous iron uptake tra 97.8 1.6E-05 5.4E-10 57.7 3.4 22 34-55 5-26 (272)
233 1ex7_A Guanylate kinase; subst 97.8 1.5E-05 5.2E-10 54.8 3.1 21 34-54 3-23 (186)
234 3iij_A Coilin-interacting nucl 97.8 1.2E-05 4E-10 54.1 2.4 25 30-54 9-33 (180)
235 2ze6_A Isopentenyl transferase 97.7 1.5E-05 5.1E-10 57.0 3.1 21 34-54 3-23 (253)
236 3r20_A Cytidylate kinase; stru 97.7 1.8E-05 6E-10 56.4 3.3 23 32-54 9-31 (233)
237 1ly1_A Polynucleotide kinase; 97.7 1.9E-05 6.7E-10 52.6 3.3 21 34-54 4-24 (181)
238 2zr9_A Protein RECA, recombina 97.7 2.3E-05 7.8E-10 58.8 3.7 27 28-54 57-83 (349)
239 2v54_A DTMP kinase, thymidylat 97.7 2.6E-05 8.8E-10 53.1 3.6 25 31-55 3-27 (204)
240 3trf_A Shikimate kinase, SK; a 97.7 2.5E-05 8.7E-10 52.5 3.5 24 31-54 4-27 (185)
241 3q72_A GTP-binding protein RAD 97.7 2E-05 7E-10 51.5 2.9 22 34-55 4-25 (166)
242 2nzj_A GTP-binding protein REM 97.7 2.7E-05 9.2E-10 51.3 3.4 22 34-55 6-27 (175)
243 3cf0_A Transitional endoplasmi 97.7 1.6E-05 5.4E-10 58.1 2.4 30 26-55 43-72 (301)
244 1fzq_A ADP-ribosylation factor 97.7 2.1E-05 7.3E-10 52.8 2.9 22 34-55 18-39 (181)
245 2ged_A SR-beta, signal recogni 97.7 2.4E-05 8.1E-10 52.7 3.1 23 33-55 49-71 (193)
246 2r6a_A DNAB helicase, replicat 97.7 1.3E-05 4.3E-10 61.9 1.8 37 19-55 190-226 (454)
247 1sxj_E Activator 1 40 kDa subu 97.7 1.7E-05 5.7E-10 58.6 2.3 22 33-54 37-58 (354)
248 2plr_A DTMP kinase, probable t 97.7 2.8E-05 9.5E-10 53.1 3.3 24 31-54 3-26 (213)
249 1uf9_A TT1252 protein; P-loop, 97.7 2.5E-05 8.4E-10 53.1 3.0 24 33-56 9-32 (203)
250 3lxw_A GTPase IMAP family memb 97.7 2.8E-05 9.5E-10 55.3 3.3 22 34-55 23-44 (247)
251 2erx_A GTP-binding protein DI- 97.7 3.1E-05 1.1E-09 50.6 3.4 21 34-54 5-25 (172)
252 1gtv_A TMK, thymidylate kinase 97.7 9.2E-06 3.1E-10 55.8 0.7 21 34-54 2-22 (214)
253 1z2a_A RAS-related protein RAB 97.6 2.8E-05 9.6E-10 50.8 3.0 21 34-54 7-27 (168)
254 2wwf_A Thymidilate kinase, put 97.6 3.1E-05 1.1E-09 53.1 3.4 25 30-54 8-32 (212)
255 3q85_A GTP-binding protein REM 97.6 3.2E-05 1.1E-09 50.7 3.3 21 34-54 4-24 (169)
256 2bwj_A Adenylate kinase 5; pho 97.6 1.1E-05 3.7E-10 54.8 0.9 28 27-54 7-34 (199)
257 2c95_A Adenylate kinase 1; tra 97.6 3.3E-05 1.1E-09 52.2 3.3 25 30-54 7-31 (196)
258 1kao_A RAP2A; GTP-binding prot 97.6 3.1E-05 1.1E-09 50.3 3.1 21 34-54 5-25 (167)
259 3tw8_B RAS-related protein RAB 97.6 3.3E-05 1.1E-09 51.0 3.2 22 34-55 11-32 (181)
260 1gvn_B Zeta; postsegregational 97.6 2.6E-05 8.8E-10 56.9 2.8 25 30-54 31-55 (287)
261 1nks_A Adenylate kinase; therm 97.6 3E-05 1E-09 52.1 3.0 21 34-54 3-23 (194)
262 1tev_A UMP-CMP kinase; ploop, 97.6 3.4E-05 1.1E-09 52.0 3.2 23 32-54 3-25 (196)
263 1nn5_A Similar to deoxythymidy 97.6 3.5E-05 1.2E-09 52.8 3.3 26 29-54 6-31 (215)
264 2ius_A DNA translocase FTSK; n 97.6 3.4E-05 1.2E-09 60.7 3.5 32 23-54 158-189 (512)
265 2dyk_A GTP-binding protein; GT 97.6 3.5E-05 1.2E-09 50.0 3.1 22 34-55 3-24 (161)
266 2ce2_X GTPase HRAS; signaling 97.6 3E-05 1E-09 50.2 2.7 21 34-54 5-25 (166)
267 1z0j_A RAB-22, RAS-related pro 97.6 3.5E-05 1.2E-09 50.4 3.1 22 34-55 8-29 (170)
268 1u8z_A RAS-related protein RAL 97.6 3.5E-05 1.2E-09 50.1 3.0 22 34-55 6-27 (168)
269 1z08_A RAS-related protein RAB 97.6 3.6E-05 1.2E-09 50.4 3.1 21 34-54 8-28 (170)
270 2e87_A Hypothetical protein PH 97.6 3.2E-05 1.1E-09 57.8 3.2 25 31-55 166-190 (357)
271 1moz_A ARL1, ADP-ribosylation 97.6 2.3E-05 7.9E-10 52.1 2.1 23 32-54 18-40 (183)
272 1c1y_A RAS-related protein RAP 97.6 3.7E-05 1.3E-09 50.1 3.0 21 34-54 5-25 (167)
273 2z0h_A DTMP kinase, thymidylat 97.6 3.9E-05 1.3E-09 51.9 3.2 21 34-54 2-22 (197)
274 4ag6_A VIRB4 ATPase, type IV s 97.6 3.1E-05 1E-09 58.4 2.9 24 31-54 34-57 (392)
275 1ek0_A Protein (GTP-binding pr 97.6 3.9E-05 1.3E-09 50.1 3.0 21 34-54 5-25 (170)
276 1ky3_A GTP-binding protein YPT 97.6 3.9E-05 1.3E-09 50.7 3.1 21 34-54 10-30 (182)
277 3t1o_A Gliding protein MGLA; G 97.6 3.8E-05 1.3E-09 51.5 3.0 22 34-55 16-37 (198)
278 1jal_A YCHF protein; nucleotid 97.6 3.9E-05 1.3E-09 57.9 3.4 23 32-54 2-24 (363)
279 1svi_A GTP-binding protein YSX 97.6 3.4E-05 1.2E-09 51.8 2.8 23 33-55 24-46 (195)
280 1wf3_A GTP-binding protein; GT 97.6 3.9E-05 1.3E-09 56.3 3.3 22 34-55 9-30 (301)
281 1wms_A RAB-9, RAB9, RAS-relate 97.6 4E-05 1.4E-09 50.6 3.1 22 34-55 9-30 (177)
282 3pqc_A Probable GTP-binding pr 97.6 3.5E-05 1.2E-09 51.6 2.8 22 34-55 25-46 (195)
283 3ake_A Cytidylate kinase; CMP 97.6 3.8E-05 1.3E-09 52.4 3.0 21 34-54 4-24 (208)
284 2vli_A Antibiotic resistance p 97.6 3.2E-05 1.1E-09 51.8 2.5 24 31-54 4-27 (183)
285 3llm_A ATP-dependent RNA helic 97.6 3.1E-05 1E-09 54.5 2.6 27 28-54 72-98 (235)
286 1g16_A RAS-related protein SEC 97.6 3.6E-05 1.2E-09 50.3 2.7 22 34-55 5-26 (170)
287 2lkc_A Translation initiation 97.6 5.7E-05 1.9E-09 49.9 3.7 24 31-54 7-30 (178)
288 3iby_A Ferrous iron transport 97.6 3.8E-05 1.3E-09 55.0 3.0 22 34-55 3-24 (256)
289 2cxx_A Probable GTP-binding pr 97.6 3.8E-05 1.3E-09 51.3 2.8 22 34-55 3-24 (190)
290 2dby_A GTP-binding protein; GD 97.6 3.2E-05 1.1E-09 58.4 2.7 21 34-54 3-23 (368)
291 1r2q_A RAS-related protein RAB 97.6 4.4E-05 1.5E-09 49.8 3.0 21 34-54 8-28 (170)
292 3clv_A RAB5 protein, putative; 97.6 4.4E-05 1.5E-09 51.2 3.1 22 34-55 9-30 (208)
293 2oil_A CATX-8, RAS-related pro 97.6 4.3E-05 1.5E-09 51.4 3.1 21 34-54 27-47 (193)
294 3fb4_A Adenylate kinase; psych 97.6 4.6E-05 1.6E-09 52.5 3.2 21 34-54 2-22 (216)
295 4dsu_A GTPase KRAS, isoform 2B 97.6 4.5E-05 1.5E-09 50.8 3.1 21 34-54 6-26 (189)
296 2fn4_A P23, RAS-related protei 97.6 3.9E-05 1.3E-09 50.6 2.8 22 34-55 11-32 (181)
297 1aky_A Adenylate kinase; ATP:A 97.6 5.7E-05 2E-09 52.4 3.7 24 31-54 3-26 (220)
298 2hxs_A RAB-26, RAS-related pro 97.5 5.4E-05 1.9E-09 50.0 3.4 21 34-54 8-28 (178)
299 3bc1_A RAS-related protein RAB 97.5 4.7E-05 1.6E-09 50.8 3.0 21 34-54 13-33 (195)
300 3cbq_A GTP-binding protein REM 97.5 4.3E-05 1.5E-09 52.0 2.8 21 34-54 25-45 (195)
301 1upt_A ARL1, ADP-ribosylation 97.5 5E-05 1.7E-09 49.8 3.0 21 34-54 9-29 (171)
302 3dl0_A Adenylate kinase; phosp 97.5 5.5E-05 1.9E-09 52.2 3.2 21 34-54 2-22 (216)
303 1xjc_A MOBB protein homolog; s 97.5 5.3E-05 1.8E-09 51.4 3.1 22 33-54 5-26 (169)
304 1r8s_A ADP-ribosylation factor 97.5 5.3E-05 1.8E-09 49.3 3.0 21 34-54 2-22 (164)
305 3iev_A GTP-binding protein ERA 97.5 5.5E-05 1.9E-09 55.5 3.3 23 33-55 11-33 (308)
306 3a1s_A Iron(II) transport prot 97.5 5.9E-05 2E-09 54.0 3.4 22 34-55 7-28 (258)
307 3i8s_A Ferrous iron transport 97.5 5.2E-05 1.8E-09 54.7 3.1 22 34-55 5-26 (274)
308 1e6c_A Shikimate kinase; phosp 97.5 5.7E-05 1.9E-09 50.1 3.1 22 33-54 3-24 (173)
309 1zd8_A GTP:AMP phosphotransfer 97.5 5.9E-05 2E-09 52.6 3.3 25 30-54 5-29 (227)
310 2pbr_A DTMP kinase, thymidylat 97.5 6.1E-05 2.1E-09 50.7 3.2 21 34-54 2-22 (195)
311 1z0f_A RAB14, member RAS oncog 97.5 5.7E-05 2E-09 49.7 3.0 21 34-54 17-37 (179)
312 2cjw_A GTP-binding protein GEM 97.5 5.6E-05 1.9E-09 51.3 3.0 21 34-54 8-28 (192)
313 2a9k_A RAS-related protein RAL 97.5 5.8E-05 2E-09 50.1 3.0 21 34-54 20-40 (187)
314 4fcw_A Chaperone protein CLPB; 97.5 6.9E-06 2.4E-10 59.5 -1.7 39 17-55 21-70 (311)
315 2g6b_A RAS-related protein RAB 97.5 5.9E-05 2E-09 49.9 3.0 21 34-54 12-32 (180)
316 2pt5_A Shikimate kinase, SK; a 97.5 6.7E-05 2.3E-09 49.6 3.3 21 34-54 2-22 (168)
317 3ihw_A Centg3; RAS, centaurin, 97.5 6E-05 2.1E-09 50.8 3.1 21 34-54 22-42 (184)
318 3con_A GTPase NRAS; structural 97.5 6E-05 2E-09 50.5 3.0 21 34-54 23-43 (190)
319 3t5d_A Septin-7; GTP-binding p 97.5 5.4E-05 1.8E-09 54.5 3.0 22 34-55 10-31 (274)
320 2y8e_A RAB-protein 6, GH09086P 97.5 5.4E-05 1.8E-09 49.9 2.7 21 34-54 16-36 (179)
321 2xtp_A GTPase IMAP family memb 97.5 5.7E-05 2E-09 53.6 3.1 22 34-55 24-45 (260)
322 1zuh_A Shikimate kinase; alpha 97.5 7.7E-05 2.6E-09 49.5 3.4 22 33-54 8-29 (168)
323 1ksh_A ARF-like protein 2; sma 97.5 7.1E-05 2.4E-09 50.0 3.3 25 31-55 17-41 (186)
324 2efe_B Small GTP-binding prote 97.5 6.7E-05 2.3E-09 49.7 3.1 22 34-55 14-35 (181)
325 1vg8_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 50.8 3.1 22 34-55 10-31 (207)
326 1qf9_A UMP/CMP kinase, protein 97.5 6.5E-05 2.2E-09 50.4 2.9 22 33-54 7-28 (194)
327 2cdn_A Adenylate kinase; phosp 97.5 8.8E-05 3E-09 50.7 3.6 24 31-54 19-42 (201)
328 3tkl_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 50.3 3.0 21 34-54 18-38 (196)
329 2gf9_A RAS-related protein RAB 97.5 7E-05 2.4E-09 50.3 3.0 21 34-54 24-44 (189)
330 2bme_A RAB4A, RAS-related prot 97.5 6.2E-05 2.1E-09 50.1 2.7 21 34-54 12-32 (186)
331 3kkq_A RAS-related protein M-R 97.5 7.2E-05 2.5E-09 49.7 3.0 21 34-54 20-40 (183)
332 1m7b_A RND3/RHOE small GTP-bin 97.5 6.3E-05 2.2E-09 50.4 2.7 21 34-54 9-29 (184)
333 1nrj_B SR-beta, signal recogni 97.5 7E-05 2.4E-09 51.4 3.0 22 34-55 14-35 (218)
334 2bov_A RAla, RAS-related prote 97.4 7.4E-05 2.5E-09 50.5 3.0 21 34-54 16-36 (206)
335 2iyv_A Shikimate kinase, SK; t 97.4 8.1E-05 2.8E-09 50.0 3.2 22 33-54 3-24 (184)
336 2fg5_A RAB-22B, RAS-related pr 97.4 6.9E-05 2.4E-09 50.6 2.8 22 34-55 25-46 (192)
337 1zak_A Adenylate kinase; ATP:A 97.4 7.3E-05 2.5E-09 51.9 3.0 24 31-54 4-27 (222)
338 1ukz_A Uridylate kinase; trans 97.4 8.4E-05 2.9E-09 50.7 3.2 23 32-54 15-37 (203)
339 2gf0_A GTP-binding protein DI- 97.4 6.9E-05 2.4E-09 50.4 2.8 21 34-54 10-30 (199)
340 1zbd_A Rabphilin-3A; G protein 97.4 8.7E-05 3E-09 50.3 3.3 22 34-55 10-31 (203)
341 2il1_A RAB12; G-protein, GDP, 97.4 8.2E-05 2.8E-09 50.3 3.2 22 34-55 28-49 (192)
342 2h57_A ADP-ribosylation factor 97.4 6.5E-05 2.2E-09 50.5 2.6 23 33-55 22-44 (190)
343 3bos_A Putative DNA replicatio 97.4 9.9E-05 3.4E-09 51.0 3.6 24 31-54 51-74 (242)
344 1mh1_A RAC1; GTP-binding, GTPa 97.4 7.9E-05 2.7E-09 49.4 3.0 21 34-54 7-27 (186)
345 4bas_A ADP-ribosylation factor 97.4 8.7E-05 3E-09 49.9 3.2 22 34-55 19-40 (199)
346 2qby_A CDC6 homolog 1, cell di 97.4 6.9E-05 2.3E-09 55.3 2.9 26 30-55 43-68 (386)
347 1jwy_B Dynamin A GTPase domain 97.4 7.5E-05 2.6E-09 54.3 3.0 22 34-55 26-47 (315)
348 3oes_A GTPase rhebl1; small GT 97.4 7.2E-05 2.5E-09 50.8 2.7 22 33-54 25-46 (201)
349 1z06_A RAS-related protein RAB 97.4 8.6E-05 2.9E-09 49.8 3.1 21 34-54 22-42 (189)
350 2qu8_A Putative nucleolar GTP- 97.4 9.3E-05 3.2E-09 51.4 3.3 22 34-55 31-52 (228)
351 3t5g_A GTP-binding protein RHE 97.4 7.7E-05 2.6E-09 49.5 2.7 21 34-54 8-28 (181)
352 2a5j_A RAS-related protein RAB 97.4 8.8E-05 3E-09 49.9 3.1 21 34-54 23-43 (191)
353 1sxj_D Activator 1 41 kDa subu 97.4 3.7E-05 1.3E-09 56.5 1.2 39 17-55 41-81 (353)
354 1v5w_A DMC1, meiotic recombina 97.4 8.7E-05 3E-09 55.3 3.3 27 28-54 118-144 (343)
355 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 9.2E-05 3.2E-09 52.9 3.3 24 31-54 3-26 (260)
356 3dz8_A RAS-related protein RAB 97.4 7.7E-05 2.6E-09 50.2 2.7 21 34-54 25-45 (191)
357 3reg_A RHO-like small GTPase; 97.4 9.1E-05 3.1E-09 49.9 3.0 22 34-55 25-46 (194)
358 2o52_A RAS-related protein RAB 97.4 9E-05 3.1E-09 50.4 3.0 21 34-54 27-47 (200)
359 2xb4_A Adenylate kinase; ATP-b 97.4 9.9E-05 3.4E-09 51.5 3.3 21 34-54 2-22 (223)
360 1zj6_A ADP-ribosylation factor 97.4 9.3E-05 3.2E-09 49.6 3.0 22 33-54 17-38 (187)
361 1fnn_A CDC6P, cell division co 97.4 9E-05 3.1E-09 54.9 3.2 25 31-55 41-67 (389)
362 1x3s_A RAS-related protein RAB 97.4 9.5E-05 3.3E-09 49.5 3.0 22 34-55 17-38 (195)
363 1zd9_A ADP-ribosylation factor 97.4 9.6E-05 3.3E-09 49.7 3.0 21 34-54 24-44 (188)
364 4dhe_A Probable GTP-binding pr 97.4 4E-05 1.4E-09 52.7 1.2 23 33-55 30-52 (223)
365 2f7s_A C25KG, RAS-related prot 97.4 0.00011 3.9E-09 50.3 3.4 22 34-55 27-48 (217)
366 2ew1_A RAS-related protein RAB 97.4 8.5E-05 2.9E-09 50.9 2.7 21 34-54 28-48 (201)
367 2atv_A RERG, RAS-like estrogen 97.4 0.0001 3.5E-09 49.8 3.1 23 33-55 29-51 (196)
368 2p5s_A RAS and EF-hand domain 97.4 0.0001 3.5E-09 50.0 3.1 24 32-55 28-51 (199)
369 3b9p_A CG5977-PA, isoform A; A 97.4 0.00011 3.7E-09 53.0 3.4 25 31-55 53-77 (297)
370 3cph_A RAS-related protein SEC 97.4 0.0001 3.4E-09 50.2 3.0 22 33-54 21-42 (213)
371 1uj2_A Uridine-cytidine kinase 97.4 0.00011 3.7E-09 52.2 3.2 22 33-54 23-44 (252)
372 2aka_B Dynamin-1; fusion prote 97.4 8.8E-05 3E-09 53.4 2.8 22 34-55 28-49 (299)
373 2grj_A Dephospho-COA kinase; T 97.4 0.00011 3.9E-09 50.5 3.2 24 32-55 12-35 (192)
374 2iwr_A Centaurin gamma 1; ANK 97.4 7.2E-05 2.5E-09 49.5 2.2 21 34-54 9-29 (178)
375 2bcg_Y Protein YP2, GTP-bindin 97.4 9.3E-05 3.2E-09 50.3 2.7 21 34-54 10-30 (206)
376 2h17_A ADP-ribosylation factor 97.4 8.7E-05 3E-09 49.5 2.6 22 34-55 23-44 (181)
377 3llu_A RAS-related GTP-binding 97.4 0.00011 3.8E-09 49.8 3.0 22 34-55 22-43 (196)
378 2g3y_A GTP-binding protein GEM 97.4 0.00013 4.4E-09 50.8 3.4 21 34-54 39-59 (211)
379 2q3h_A RAS homolog gene family 97.3 0.00013 4.4E-09 49.3 3.3 23 32-54 20-42 (201)
380 2z43_A DNA repair and recombin 97.3 0.00014 4.9E-09 53.6 3.7 27 28-54 103-129 (324)
381 2wsm_A Hydrogenase expression/ 97.3 0.0001 3.6E-09 50.7 2.8 22 33-54 31-52 (221)
382 2fv8_A H6, RHO-related GTP-bin 97.3 0.00011 3.6E-09 50.3 2.8 21 34-54 27-47 (207)
383 2j1l_A RHO-related GTP-binding 97.3 0.00012 4.1E-09 50.4 3.1 21 34-54 36-56 (214)
384 4dcu_A GTP-binding protein ENG 97.3 0.0001 3.4E-09 56.9 2.9 22 34-55 25-46 (456)
385 1gwn_A RHO-related GTP-binding 97.3 0.0001 3.6E-09 50.6 2.7 22 34-55 30-51 (205)
386 3kl4_A SRP54, signal recogniti 97.3 8.8E-05 3E-09 57.2 2.6 24 31-54 96-119 (433)
387 1e4v_A Adenylate kinase; trans 97.3 0.00011 3.9E-09 50.7 2.9 21 34-54 2-22 (214)
388 3c5c_A RAS-like protein 12; GD 97.3 0.00013 4.3E-09 49.2 3.1 21 34-54 23-43 (187)
389 3bwd_D RAC-like GTP-binding pr 97.3 0.00015 5.3E-09 47.9 3.4 22 33-54 9-30 (182)
390 2fh5_B SR-beta, signal recogni 97.3 0.00013 4.4E-09 49.9 3.0 22 33-54 8-29 (214)
391 2w58_A DNAI, primosome compone 97.3 0.00017 5.6E-09 49.2 3.5 22 33-54 55-76 (202)
392 2b6h_A ADP-ribosylation factor 97.3 0.00013 4.3E-09 49.5 2.9 24 32-55 29-52 (192)
393 2fu5_C RAS-related protein RAB 97.3 8.1E-05 2.8E-09 49.5 1.9 21 34-54 10-30 (183)
394 1njg_A DNA polymerase III subu 97.3 2.8E-05 9.6E-10 53.3 -0.5 34 21-54 31-67 (250)
395 2f6r_A COA synthase, bifunctio 97.3 0.00012 4.3E-09 53.0 3.0 24 33-56 76-99 (281)
396 3def_A T7I23.11 protein; chlor 97.3 0.00013 4.5E-09 52.1 3.1 22 34-55 38-59 (262)
397 1ko7_A HPR kinase/phosphatase; 97.3 0.00026 9.1E-09 52.4 4.7 38 19-57 132-169 (314)
398 2gco_A H9, RHO-related GTP-bin 97.3 0.00013 4.3E-09 49.7 2.7 21 34-54 27-47 (201)
399 3tlx_A Adenylate kinase 2; str 97.3 0.00015 5.1E-09 51.4 3.2 25 30-54 27-51 (243)
400 3be4_A Adenylate kinase; malar 97.3 0.00016 5.6E-09 50.1 3.3 24 31-54 4-27 (217)
401 1sky_E F1-ATPase, F1-ATP synth 97.3 0.00015 5.1E-09 56.5 3.3 33 21-54 141-173 (473)
402 3cnl_A YLQF, putative uncharac 97.3 0.00014 4.9E-09 52.3 3.0 23 33-55 100-122 (262)
403 1h65_A Chloroplast outer envel 97.3 0.00014 4.9E-09 52.0 3.0 22 34-55 41-62 (270)
404 4djt_A GTP-binding nuclear pro 97.3 6.8E-05 2.3E-09 51.5 1.2 21 34-54 13-33 (218)
405 2qmh_A HPR kinase/phosphorylas 97.3 0.00032 1.1E-08 48.9 4.5 38 18-56 21-58 (205)
406 1a7j_A Phosphoribulokinase; tr 97.3 7.6E-05 2.6E-09 54.5 1.4 23 32-54 5-27 (290)
407 2atx_A Small GTP binding prote 97.3 0.00015 5.2E-09 48.7 2.8 21 34-54 20-40 (194)
408 1jbk_A CLPB protein; beta barr 97.2 0.00022 7.5E-09 47.2 3.5 24 31-54 42-65 (195)
409 1ltq_A Polynucleotide kinase; 97.2 0.00018 6.2E-09 52.0 3.3 22 33-54 3-24 (301)
410 1ypw_A Transitional endoplasmi 97.2 6.2E-05 2.1E-09 62.0 0.8 30 25-54 504-533 (806)
411 2x77_A ADP-ribosylation factor 97.2 0.00013 4.3E-09 48.9 2.1 22 33-54 23-44 (189)
412 2hup_A RAS-related protein RAB 97.2 0.00018 6E-09 49.0 2.8 21 34-54 31-51 (201)
413 1wxq_A GTP-binding protein; st 97.2 0.00018 6.2E-09 54.8 3.1 22 34-55 2-23 (397)
414 1ak2_A Adenylate kinase isoenz 97.2 0.00026 8.9E-09 49.6 3.6 24 31-54 15-38 (233)
415 3v9p_A DTMP kinase, thymidylat 97.2 0.00018 6.1E-09 50.9 2.8 26 29-54 22-47 (227)
416 1l8q_A Chromosomal replication 97.2 0.00019 6.7E-09 52.5 3.1 23 32-54 37-59 (324)
417 3cpj_B GTP-binding protein YPT 97.2 0.00021 7.3E-09 49.4 3.1 21 34-54 15-35 (223)
418 3h4m_A Proteasome-activating n 97.2 0.00023 7.7E-09 50.9 3.3 27 29-55 48-74 (285)
419 4gzl_A RAS-related C3 botulinu 97.2 0.00019 6.4E-09 49.0 2.7 22 33-54 31-52 (204)
420 2hf9_A Probable hydrogenase ni 97.2 0.00019 6.5E-09 49.5 2.7 22 33-54 39-60 (226)
421 3q3j_B RHO-related GTP-binding 97.2 0.00022 7.5E-09 49.2 3.0 22 33-54 28-49 (214)
422 3kta_B Chromosome segregation 97.2 7.2E-05 2.5E-09 50.8 0.5 19 108-126 62-80 (173)
423 3zvl_A Bifunctional polynucleo 97.2 0.00025 8.5E-09 54.2 3.6 26 29-54 255-280 (416)
424 3bh0_A DNAB-like replicative h 97.2 0.00028 9.6E-09 51.9 3.6 36 19-54 55-90 (315)
425 2yc2_C IFT27, small RAB-relate 97.2 8.5E-05 2.9E-09 50.2 0.7 22 34-55 22-43 (208)
426 4edh_A DTMP kinase, thymidylat 97.2 0.00026 9E-09 49.4 3.2 25 30-54 4-28 (213)
427 2hjg_A GTP-binding protein ENG 97.2 0.00021 7.2E-09 54.7 3.0 22 34-55 5-26 (436)
428 3sr0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 48.9 3.2 21 34-54 2-22 (206)
429 2j0v_A RAC-like GTP-binding pr 97.1 0.00025 8.4E-09 48.4 2.7 21 34-54 11-31 (212)
430 3lv8_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 49.9 3.3 24 31-54 26-49 (236)
431 3d3q_A TRNA delta(2)-isopenten 97.1 0.00029 1E-08 52.7 3.2 21 34-54 9-29 (340)
432 3umf_A Adenylate kinase; rossm 97.1 0.00023 8E-09 50.0 2.6 28 27-54 24-51 (217)
433 2zts_A Putative uncharacterize 97.1 0.00045 1.6E-08 48.1 4.0 35 18-52 15-50 (251)
434 2i1q_A DNA repair and recombin 97.1 0.00032 1.1E-08 51.5 3.3 27 28-54 94-120 (322)
435 1f2t_B RAD50 ABC-ATPase; DNA d 97.1 9.7E-05 3.3E-09 48.9 0.4 18 105-122 52-69 (148)
436 4a9a_A Ribosome-interacting GT 97.1 0.0002 7E-09 54.2 2.3 30 26-55 64-95 (376)
437 2p65_A Hypothetical protein PF 97.1 0.00026 9.1E-09 46.8 2.6 24 31-54 42-65 (187)
438 2h92_A Cytidylate kinase; ross 97.1 0.00036 1.2E-08 48.0 3.3 23 32-54 3-25 (219)
439 1puj_A YLQF, conserved hypothe 97.1 0.00031 1E-08 51.1 3.0 22 34-55 122-143 (282)
440 4tmk_A Protein (thymidylate ki 97.0 0.0004 1.4E-08 48.5 3.4 24 31-54 2-25 (213)
441 2r62_A Cell division protease 97.0 8.4E-05 2.9E-09 52.8 -0.2 20 35-54 47-66 (268)
442 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00045 1.5E-08 48.6 3.6 25 30-54 37-61 (262)
443 2z4s_A Chromosomal replication 97.0 0.00031 1.1E-08 54.0 2.8 23 32-54 130-152 (440)
444 3crm_A TRNA delta(2)-isopenten 97.0 0.0004 1.4E-08 51.6 3.3 22 34-55 7-28 (323)
445 1lnz_A SPO0B-associated GTP-bi 97.0 0.00053 1.8E-08 51.2 3.9 33 23-55 149-181 (342)
446 2v3c_C SRP54, signal recogniti 97.0 0.00024 8.3E-09 54.7 2.1 28 27-54 92-121 (432)
447 2ocp_A DGK, deoxyguanosine kin 97.0 0.00038 1.3E-08 48.9 3.0 24 32-55 2-25 (241)
448 2x2e_A Dynamin-1; nitration, h 97.0 0.00027 9.2E-09 52.7 2.2 22 34-55 33-54 (353)
449 3r7w_A Gtpase1, GTP-binding pr 97.0 0.00046 1.6E-08 50.5 3.4 23 33-55 4-26 (307)
450 1p5z_B DCK, deoxycytidine kina 97.0 0.00026 8.8E-09 50.5 2.0 26 30-55 22-47 (263)
451 3p32_A Probable GTPase RV1496/ 97.0 0.00041 1.4E-08 51.8 3.1 23 32-54 79-101 (355)
452 3tmk_A Thymidylate kinase; pho 97.0 0.0005 1.7E-08 48.2 3.3 25 30-54 3-27 (216)
453 3ld9_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 48.5 3.2 25 30-54 19-43 (223)
454 1u94_A RECA protein, recombina 97.0 0.00066 2.2E-08 51.0 4.0 27 28-54 59-85 (356)
455 4a1f_A DNAB helicase, replicat 96.9 0.00027 9.4E-09 52.8 1.8 36 19-54 33-68 (338)
456 3a8t_A Adenylate isopentenyltr 96.9 0.00071 2.4E-08 50.6 4.1 26 31-56 39-64 (339)
457 3gj0_A GTP-binding nuclear pro 96.9 0.00024 8.3E-09 48.9 1.4 21 34-54 17-38 (221)
458 3geh_A MNME, tRNA modification 96.9 0.00041 1.4E-08 53.8 2.8 24 31-54 223-246 (462)
459 3l0i_B RAS-related protein RAB 96.9 8.8E-05 3E-09 50.3 -0.9 22 34-55 35-56 (199)
460 3ec1_A YQEH GTPase; atnos1, at 96.9 0.0005 1.7E-08 51.7 3.2 25 31-55 161-185 (369)
461 1mky_A Probable GTP-binding pr 96.9 0.00056 1.9E-08 52.4 3.4 22 34-55 3-24 (439)
462 3th5_A RAS-related C3 botulinu 96.0 0.00014 4.9E-09 49.4 0.0 23 32-54 30-52 (204)
463 3exa_A TRNA delta(2)-isopenten 96.9 0.00062 2.1E-08 50.6 3.3 23 33-55 4-26 (322)
464 3n70_A Transport activator; si 96.9 0.00069 2.4E-08 44.0 3.2 26 30-55 22-47 (145)
465 2v1u_A Cell division control p 96.9 0.00057 1.9E-08 50.4 2.9 26 30-55 42-67 (387)
466 2hjg_A GTP-binding protein ENG 96.8 0.00068 2.3E-08 51.9 3.3 23 34-56 177-199 (436)
467 2chg_A Replication factor C sm 96.8 0.00069 2.4E-08 45.8 3.0 21 34-54 40-60 (226)
468 1f5n_A Interferon-induced guan 96.8 0.00054 1.8E-08 54.8 2.8 23 33-55 39-61 (592)
469 2qpt_A EH domain-containing pr 96.8 0.00055 1.9E-08 54.2 2.8 23 33-55 66-88 (550)
470 2q6t_A DNAB replication FORK h 96.8 0.00067 2.3E-08 52.1 3.2 35 20-54 188-222 (444)
471 2orw_A Thymidine kinase; TMTK, 96.8 0.00082 2.8E-08 45.7 3.3 22 31-52 2-24 (184)
472 3foz_A TRNA delta(2)-isopenten 96.8 0.00074 2.5E-08 50.0 3.3 22 33-54 11-32 (316)
473 3sjy_A Translation initiation 96.8 0.00073 2.5E-08 51.2 3.3 21 34-54 10-30 (403)
474 3h2y_A GTPase family protein; 96.8 0.00056 1.9E-08 51.5 2.6 25 31-55 159-183 (368)
475 2xau_A PRE-mRNA-splicing facto 96.8 0.00049 1.7E-08 56.5 2.4 27 28-54 105-131 (773)
476 3gee_A MNME, tRNA modification 96.8 0.00057 2E-08 53.2 2.6 25 31-55 232-256 (476)
477 3syl_A Protein CBBX; photosynt 96.8 0.00084 2.9E-08 48.4 3.3 24 31-54 66-89 (309)
478 2j69_A Bacterial dynamin-like 96.8 0.00076 2.6E-08 54.8 3.3 25 31-55 68-92 (695)
479 3dpu_A RAB family protein; roc 96.8 0.00086 2.9E-08 52.6 3.3 22 34-55 43-64 (535)
480 3gmt_A Adenylate kinase; ssgci 96.7 0.00096 3.3E-08 47.3 3.3 22 33-54 9-30 (230)
481 4hlc_A DTMP kinase, thymidylat 96.7 0.0011 3.6E-08 46.0 3.2 23 32-54 2-24 (205)
482 3dm5_A SRP54, signal recogniti 96.7 0.00098 3.3E-08 51.5 3.2 24 31-54 99-122 (443)
483 2qgz_A Helicase loader, putati 96.7 0.0012 4.2E-08 48.3 3.6 23 32-54 152-174 (308)
484 3pvs_A Replication-associated 96.7 0.00022 7.5E-09 55.1 -0.5 33 23-55 39-73 (447)
485 3o47_A ADP-ribosylation factor 96.7 0.00083 2.8E-08 49.6 2.5 22 34-55 167-188 (329)
486 1ofh_A ATP-dependent HSL prote 96.7 0.0012 4.2E-08 47.3 3.4 23 32-54 50-72 (310)
487 1d2n_A N-ethylmaleimide-sensit 96.7 0.0011 3.7E-08 47.3 3.0 24 31-54 63-86 (272)
488 3c5h_A Glucocorticoid receptor 96.6 0.0012 4E-08 46.9 3.1 21 34-54 21-50 (255)
489 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0013 4.3E-08 49.1 3.3 28 27-54 118-145 (331)
490 3hws_A ATP-dependent CLP prote 96.6 0.0013 4.3E-08 49.0 3.4 25 31-55 50-74 (363)
491 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0013 4.6E-08 48.3 3.5 25 30-54 43-67 (322)
492 3tqf_A HPR(Ser) kinase; transf 96.6 0.0027 9.3E-08 43.3 4.6 30 27-56 11-40 (181)
493 2r44_A Uncharacterized protein 96.6 0.00016 5.5E-09 53.0 -1.7 35 20-54 34-68 (331)
494 3eph_A TRNA isopentenyltransfe 96.6 0.0012 4E-08 50.6 2.9 22 33-54 3-24 (409)
495 3uk6_A RUVB-like 2; hexameric 96.6 0.0014 4.7E-08 48.4 3.3 24 31-54 69-92 (368)
496 3t15_A Ribulose bisphosphate c 96.6 0.0015 5E-08 47.5 3.3 23 32-54 36-58 (293)
497 3l0o_A Transcription terminati 96.5 0.0011 3.6E-08 50.8 2.4 31 24-54 167-197 (427)
498 2qby_B CDC6 homolog 3, cell di 96.5 0.0016 5.5E-08 48.2 3.3 23 32-54 45-67 (384)
499 3eie_A Vacuolar protein sortin 96.5 0.0018 6.1E-08 47.5 3.5 24 31-54 50-73 (322)
500 3d8b_A Fidgetin-like protein 1 96.5 0.0019 6.4E-08 48.2 3.5 26 30-55 115-140 (357)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.9e-35 Score=222.45 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=97.1
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee----------------eeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI----------------KASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~----------------~~i~ 64 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.+ ..++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 7999999999999999999999999999999999999999999999999532 221 1389
Q ss_pred eeeecccCCCCcchHHHHHHHHh------hhhHHH----HHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK------IQTVCK----VKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~------~~~~~~----~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++..++.+||.||+.++.. ....++ ++.+... .+.++.+.+|||||||||+|||||+.
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~ 155 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAP 155 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999988778899999988642 111223 3333333 34466667799999999999999974
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=6.6e-35 Score=221.91 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=97.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~ 67 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .++|+|
T Consensus 2 ~~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred CEEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 36999999999999999999999999999999999999999999999999543 2221 389999
Q ss_pred ecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 68 RATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|++..++.+||.||+.++... ...++++++.... .+.++.+.+|||||||||+|||||+
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH
Confidence 999888888999999886531 1122333333222 3445666779999999999999996
No 3
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.6e-34 Score=205.10 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=95.6
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee------------------e
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI------------------K 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~------------------~ 61 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 48999999999998889999999999999999999999999999999999532 211 1
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTT
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 389999998777778999999875421 1122333333322 23355566799999999999999974
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.1e-34 Score=217.19 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=96.6
Q ss_pred CCeeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee-------------
Q psy18211 4 WPALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------- 61 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------- 61 (127)
.++|+++||+++|++ .++|+||||+|++||+++|+||||||||||+|+|+|... +.++
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 358999999999964 469999999999999999999999999999999999532 2221
Q ss_pred ----eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ----ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ----~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|+||++..++.+||.||+.++... ...+++.++.... ...++.+.+|||||||||+|||||+.
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 289999999888888999999886521 1122333333222 34466677799999999999999974
No 5
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.9e-34 Score=210.55 Aligned_cols=123 Identities=17% Similarity=0.186 Sum_probs=97.5
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------ee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------SD 64 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i~ 64 (127)
+++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|. |++.+++ ++
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 3579999999999999999999999999999999999999999999999994 3333321 79
Q ss_pred eeeecccCCCCcchHHHHHHHHh----hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIK----IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|++|++...++.|+.||+.+... ....+.++++.... ...++...+|||||||||+|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999888788899999987542 11223333333332 2345555679999999999999997
No 6
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.7e-34 Score=205.65 Aligned_cols=126 Identities=17% Similarity=0.022 Sum_probs=97.1
Q ss_pred CCCCCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------
Q psy18211 1 MELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-------------- 61 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-------------- 61 (127)
|-..++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +.++
T Consensus 1 ~~~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 80 (240)
T 1ji0_A 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp CCCSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CCCCceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 433468999999999998889999999999999999999999999999999999532 2221
Q ss_pred -eeeeeeecccCCCCcchHHHHHHHHh-----hhhHHHHHHHH-----hHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 -ASDLISRATTSPWPGTTLNLLKEIIK-----IQTVCKVKELG-----KKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 -~i~~~~q~~~~~~~~t~~~~l~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|+||++..++..|+.||+.+... ....+.++++. .. ...++.+.+|||||||||+|||||++
T Consensus 81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 28999999877777799999987531 11122333332 32 23355566799999999999999974
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.9e-34 Score=209.34 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=94.0
Q ss_pred CeeeeceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee----------------e
Q psy18211 5 PALEGREVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK----------------A 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~----------------~ 62 (127)
++|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 479999999999764 59999999999999999999999999999999999532 2221 2
Q ss_pred eeeeeeccc-CCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATT-SPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~-~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|+||++. ..+..|+.||+.+.... ...+.++++.... ...++.+.+|||||||||+|||||++
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHc
Confidence 899999874 34577999999876521 1122333333222 33455666799999999999999974
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.6e-34 Score=206.53 Aligned_cols=122 Identities=15% Similarity=0.065 Sum_probs=93.7
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee---------------
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------- 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------- 61 (127)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|... +.++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999974 459999999999999999999999999999999999532 2221
Q ss_pred ---eeeeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHhh----hcccCCCCCCcccchhhhhHhhh
Q psy18211 62 ---ASDLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKIL----LSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 62 ---~i~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~LSgGekqrv~ia~aL 125 (127)
.++|++|++..++.+|+.||+.++... ...+.+.++..... ..++.+.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 289999998877778999999875421 11222333322222 22556667999999999999999
Q ss_pred hC
Q psy18211 126 IK 127 (127)
Q Consensus 126 ~~ 127 (127)
++
T Consensus 161 ~~ 162 (235)
T 3tif_A 161 AN 162 (235)
T ss_dssp TT
T ss_pred Hc
Confidence 74
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-34 Score=206.71 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=95.7
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee-------------eeee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-------------ASDL 65 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-------------~i~~ 65 (127)
+++|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|... +.++ .++|
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 568999999999998899999999999999999999999999999999999532 2221 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||++..++..|+.||+.+.... ...+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99998777777999999875321 1112233322222 23345566799999999999999974
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4e-34 Score=216.40 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=96.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~q 68 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.++ .++|+||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 6999999999998889999999999999999999999999999999999532 2221 3899999
Q ss_pred cccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++.+|+.||+.++.. ....+.+.++.... .+.++.+.+|||||||||+|||||++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9887778899999988642 11122333333222 33456666799999999999999974
No 11
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.8e-34 Score=215.74 Aligned_cols=122 Identities=15% Similarity=0.085 Sum_probs=97.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~q 68 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.++ .++|+||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 6999999999998889999999999999999999999999999999999532 2221 2899999
Q ss_pred cccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++.+|+.||+.++... ...+.++++.... .+.++.+.+|||||||||+|||||++
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 98877788999999886421 1122333333322 23456666799999999999999974
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7.9e-34 Score=214.49 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=97.5
Q ss_pred CeeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeee
Q psy18211 5 PALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLI 66 (127)
Q Consensus 5 ~~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~ 66 (127)
++|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|... +.++ .++|+
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 92 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLV 92 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEE
Confidence 479999999999 88889999999999999999999999999999999999532 2221 38999
Q ss_pred eecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 67 SRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 67 ~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
||++..++.+|+.||+.++... ...+.++++.... .+.++.+.+|||||||||+|||||+.
T Consensus 93 ~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 93 FQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9998877788999999886421 1122333333322 33456666799999999999999974
No 13
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=8.2e-34 Score=206.98 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=95.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee----------------ee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK----------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~----------------~i 63 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .+
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 37999999999998889999999999999999999999999999999999532 2211 27
Q ss_pred eeeeecccCCCCcchHHHHHHHH-h------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEII-K------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~-~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++..++.+|+.||+.+.. . ....+.++++.... ...++.+.+|||||||||+|||||+.
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~ 176 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAM 176 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHC
Confidence 89999987767779999998743 1 11122333333322 23455566799999999999999974
No 14
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-33 Score=205.21 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=96.2
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce---ee---eeeeeeeecccCCCCcch
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC---KI---KASDLISRATTSPWPGTT 78 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~---~~---~~i~~~~q~~~~~~~~t~ 78 (127)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|...+ .+ ..++|+||++..++..|+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 799999999998 88899999999999999999999999999999999996443 32 248999999877778899
Q ss_pred HHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.||+.+... ....+.++++.... ...++.+.+|||||||||+|||||++
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999987531 11122333333222 23345566799999999999999974
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.9e-34 Score=215.99 Aligned_cols=123 Identities=9% Similarity=0.010 Sum_probs=92.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLIS 67 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~ 67 (127)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.++ .++|+|
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 36999999999998889999999999999999999999999999999999532 2221 389999
Q ss_pred ecccCCCCcchHHHHHHHHh------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 68 RATTSPWPGTTLNLLKEIIK------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++..++.+|+.||+.++.. ....+.++++.... .+.++.+.+|||||||||+|||||+.
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99887778899999987532 11122333333322 34456667799999999999999974
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.3e-34 Score=207.06 Aligned_cols=123 Identities=11% Similarity=0.011 Sum_probs=95.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-------------------
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI------------------- 60 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~------------------- 60 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.+
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4799999999999888999999999999999999999999999999999942 2211
Q ss_pred --------eeeeeeeecccCCCCcchHHHHHHHH-h------hhhHHHHHHHHhHh---hh-cccCCCCCCcccchhhhh
Q psy18211 61 --------KASDLISRATTSPWPGTTLNLLKEII-K------IQTVCKVKELGKKI---LL-SQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 61 --------~~i~~~~q~~~~~~~~t~~~~l~~~~-~------~~~~~~~~~~~~~~---~~-~~~~~~~LSgGekqrv~i 121 (127)
..++|+||++..++.+|+.||+.+.. . ....+.+.++.... .. .++.+.+|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 12789999987777789999998743 1 11122333333222 23 455566799999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
||||++
T Consensus 165 AraL~~ 170 (262)
T 1b0u_A 165 ARALAM 170 (262)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999974
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1e-33 Score=205.69 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=95.4
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee---------------ee
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK---------------AS 63 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~---------------~i 63 (127)
+++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .+
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 457999999999998899999999999999999999999999999999999532 2221 27
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh-------------------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI-------------------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~-------------------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~i 121 (127)
+|++|++..++..|+.||+.+.... ...+.+.++.... ...++.+.+|||||||||+|
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 8999998766678999999874311 0112233333222 23355566799999999999
Q ss_pred HhhhhC
Q psy18211 122 QYSLIK 127 (127)
Q Consensus 122 a~aL~~ 127 (127)
||||++
T Consensus 165 AraL~~ 170 (257)
T 1g6h_A 165 GRALMT 170 (257)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999974
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.2e-33 Score=213.11 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=95.5
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~q 68 (127)
||+++|++++|+++ +++|+||+|++||+++|+||||||||||||+|+|... +.++ .++|+||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999988 9999999999999999999999999999999999533 2222 2899999
Q ss_pred cccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++.+|+.||+.+.... ...+.+.++.... .+.++.+.+|||||||||+|||||+.
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 98877788999999886531 1113333333322 33456666799999999999999974
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.8e-33 Score=212.72 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=96.3
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee------------------ee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI------------------KA 62 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~------------------~~ 62 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|... +.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 6999999999998889999999999999999999999999999999999532 211 13
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|+||+...++.+|+.||+.++... ...+.++++.... .+.++.+.+|||||||||+|||||+.
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 156 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVR 156 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 89999998877788999999886521 1122333333222 33456666799999999999999974
No 20
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.9e-33 Score=201.91 Aligned_cols=121 Identities=21% Similarity=0.085 Sum_probs=88.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC--Cce-----eee---------------ee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS--DLC-----KIK---------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~--~~~-----~~~---------------~i 63 (127)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|. ..+ .++ .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 79999999999988999999999999999999999999999999999996 322 221 16
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh---------hhHHHHHHHHhHh----hhcccCCCC-CCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI---------QTVCKVKELGKKI----LLSQVKGKN-MSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~~-LSgGekqrv~ia~aL~ 126 (127)
+|++|++..++..|+.||+.+.... ...+.+.++.... ...++...+ |||||||||+|||||+
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 7899988777778999999764311 1112233322222 234566667 9999999999999997
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-33 Score=199.24 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=94.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee---------eeeeeeecc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK---------ASDLISRAT 70 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~---------~i~~~~q~~ 70 (127)
.+|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .++|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 37999999999988 9999999999999999999999999999999999953 22222 378999998
Q ss_pred cCCCCcchHHHHHHHHhh----hhHHHHHHHHhHhhhc--ccCCCCCCcccchhhhhHhhhhC
Q psy18211 71 TSPWPGTTLNLLKEIIKI----QTVCKVKELGKKILLS--QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 71 ~~~~~~t~~~~l~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
..++..|+.||+.+.... ...+.+.++.....+. ++.+.+||||||||++|||||++
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~ 150 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLV 150 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHh
Confidence 776677999999875421 1123333333322221 55566799999999999999974
No 22
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-33 Score=212.92 Aligned_cols=122 Identities=11% Similarity=0.121 Sum_probs=96.2
Q ss_pred eeeeceeEEEeCCCC--ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eee-----------------e
Q psy18211 6 ALEGREVILVARPEP--NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKI-----------------K 61 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~--~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~-----------------~ 61 (127)
+|+++|++++|++++ +|+|+||+|++||+++|+||||||||||||+|+|... +.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 699999999999888 9999999999999999999999999999999999532 211 1
Q ss_pred eeeeeeecccCCCCcchHHHHHHHHhh------hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 ASDLISRATTSPWPGTTLNLLKEIIKI------QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 ~i~~~~q~~~~~~~~t~~~~l~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.++|+||++..++.+|+.||+.++... ...+.++++.... .+.++.+.+|||||||||+|||||+.
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 389999998877788999999876421 1122333333322 33456666799999999999999974
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.98 E-value=6.3e-33 Score=203.78 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=92.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee----------------ee
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK----------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~----------------~i 63 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .+
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 3799999999999889999999999999999999999999999999999953 22211 27
Q ss_pred eeeeecccCCC--CcchHHHHHHHHh----------hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPW--PGTTLNLLKEIIK----------IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~--~~t~~~~l~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++...+ ..|++||+.+... ....+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~ 178 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMG 178 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhC
Confidence 89999875433 3599999976320 11122233332222 23355556799999999999999974
No 24
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.98 E-value=3.1e-32 Score=194.95 Aligned_cols=121 Identities=13% Similarity=0.084 Sum_probs=90.0
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee-eeeeeeecccCCCCcc
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-ASDLISRATTSPWPGT 77 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-~i~~~~q~~~~~~~~t 77 (127)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|..+ +.++ .++|++|++..+ +.|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~-~~t 84 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM-PGT 84 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCC-SBC
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCccc-CCC
Confidence 799999999995 5789999999999999999999999999999999999643 3333 489999998654 469
Q ss_pred hHHHHHHHHhh---hhHHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKI---QTVCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~---~~~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++||+.+.... ...+.++.......+ ......+||||||||++|||||++
T Consensus 85 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 85 IKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred HHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999875311 111122221111100 112345699999999999999974
No 25
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.98 E-value=3e-32 Score=195.98 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=91.3
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee-----ee-eeeeeeecccCCCCcc
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK-----IK-ASDLISRATTSPWPGT 77 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~-----~~-~i~~~~q~~~~~~~~t 77 (127)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|..++. ++ .++|++|++. .+..|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~-~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAW-IQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCC-CCSEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCc-CCCcC
Confidence 699999999997 578999999999999999999999999999999999975433 33 3899999975 45789
Q ss_pred hHHHHHHHHh--h-hhHHHHHHHHh--Hhh--------hcccCCCCCCcccchhhhhHhhhh
Q psy18211 78 TLNLLKEIIK--I-QTVCKVKELGK--KIL--------LSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 78 ~~~~l~~~~~--~-~~~~~~~~~~~--~~~--------~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+.||+.+... . ...+..+.+.. ... ..++.+.+|||||||||+|||||+
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 9999987532 1 11112221111 111 123456679999999999999997
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.98 E-value=4.5e-32 Score=198.09 Aligned_cols=122 Identities=13% Similarity=0.013 Sum_probs=92.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC--c-----eeee---------------e
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD--L-----CKIK---------------A 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~--~-----~~~~---------------~ 62 (127)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|.. . +.++ .
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 4799999999999889999999999999999999999999999999999962 2 2221 1
Q ss_pred eeeeeecccCCCCcchHHHHHHHHh--h-----------hhHHHHHHHHhHhh----hcccCCC-CCCcccchhhhhHhh
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIK--I-----------QTVCKVKELGKKIL----LSQVKGK-NMSKTEKKPLQPQYS 124 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~--~-----------~~~~~~~~~~~~~~----~~~~~~~-~LSgGekqrv~ia~a 124 (127)
++|++|++..++..|+.+++.+... . ...+.+.++..... ..++... +|||||||||+||||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra 178 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 178 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 7899999877777899999875421 0 01123333333222 2344444 499999999999999
Q ss_pred hh
Q psy18211 125 LI 126 (127)
Q Consensus 125 L~ 126 (127)
|+
T Consensus 179 L~ 180 (267)
T 2zu0_C 179 AV 180 (267)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.98 E-value=2.7e-32 Score=197.33 Aligned_cols=121 Identities=13% Similarity=0.137 Sum_probs=90.0
Q ss_pred eeeeceeEEEe--CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eee
Q psy18211 6 ALEGREVILVA--RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~--~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~ 64 (127)
-++++|++++| +++++|+++||+|++||+++|+||||||||||+|+|+|... +.++ .++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 48999999999 46789999999999999999999999999999999999532 2221 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhH----HHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTV----CKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++..+ +.|++||+.+....... +.++.+...... ..+.+.+|||||||||+|||||++
T Consensus 87 ~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSCCCT-TSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCccc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 999988664 56999999875321112 222222222111 123345799999999999999974
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.97 E-value=1.2e-32 Score=204.59 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=91.2
Q ss_pred eeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eeee
Q psy18211 6 ALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~~ 65 (127)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|... +.++ .++|
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 599999999995 5789999999999999999999999999999999999543 2332 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhH----HHHHHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTV----CKVKELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~----~~~~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|++||+.+....... +.++...... ......+.+|||||||||+|||||++
T Consensus 133 v~Q~~~l-f~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 133 VPQDTVL-FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp ECSSCCC-CSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EecCCcc-CcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 9999765 467999999876532211 2222221111 11234445799999999999999973
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.97 E-value=1.3e-32 Score=198.43 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=89.7
Q ss_pred eeeeceeEEEe-CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eeee
Q psy18211 6 ALEGREVILVA-RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~-~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~~ 65 (127)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|. |++.++ .++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 678899999999999999999999999999999999994 333332 2789
Q ss_pred eeecccCCCCcchHHHHHHHH-hhhhH----HHHHHHHhHhhhc----------ccCCCCCCcccchhhhhHhhhh
Q psy18211 66 ISRATTSPWPGTTLNLLKEII-KIQTV----CKVKELGKKILLS----------QVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~-~~~~~----~~~~~~~~~~~~~----------~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++|++..+ +.|+.||+.+.. ..... +.++.+....... .+.+.+|||||||||+|||||+
T Consensus 81 v~q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~ 155 (243)
T 1mv5_A 81 VSQDSAIM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFL 155 (243)
T ss_dssp ECCSSCCC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EcCCCccc-cccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHh
Confidence 99987654 569999998752 11112 2222222221111 2234579999999999999997
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=6.6e-32 Score=197.07 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=92.4
Q ss_pred eeeeceeEEEeC--C---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee-----------eee
Q psy18211 6 ALEGREVILVAR--P---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK-----------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~--~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~-----------~i~ 64 (127)
+|+++|++++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 689999999997 4 579999999999999999999999999999999999532 2222 279
Q ss_pred eeeecc-cCCCCcchHHHHHHHHhh-----hhHHHHHHHHhHh-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRAT-TSPWPGTTLNLLKEIIKI-----QTVCKVKELGKKI-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~-~~~~~~t~~~~l~~~~~~-----~~~~~~~~~~~~~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++ ...+..|+.||+.+.... ...+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~ 155 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence 999985 345678999999875311 1122333332222 22345556799999999999999974
No 31
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=6.5e-32 Score=194.61 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=90.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee------------eeeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK------------ASDLISR 68 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~------------~i~~~~q 68 (127)
||+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|... +.++ .++|+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 4799999999975 59999999999 9999999999999999999999532 2221 2789999
Q ss_pred cccCCCCcchHHHHHHHHh----hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 69 ATTSPWPGTTLNLLKEIIK----IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++..++.+|++||+.+... ....+.++++.... ...++.+.+|||||||||+|||||++
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9877667799999987531 11122333333322 23355566799999999999999974
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=1.9e-31 Score=195.17 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=90.7
Q ss_pred CeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------e
Q psy18211 5 PALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------A 62 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~ 62 (127)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|... +.++ .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 37999999999986 789999999999999999999999999999999999532 2221 2
Q ss_pred eeeeeecccCCCCcchHHHHHHHHhh-----hhHHHH-----HHHHhHh-----hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 63 SDLISRATTSPWPGTTLNLLKEIIKI-----QTVCKV-----KELGKKI-----LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 63 i~~~~q~~~~~~~~t~~~~l~~~~~~-----~~~~~~-----~~~~~~~-----~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++|++..+ +.|++||+.+.... ...... .++.... ...++.+.+|||||||||+|||||++
T Consensus 95 i~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLF-GRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCC-SSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccc-cccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 89999988654 46999999875311 111111 1111111 12244456699999999999999974
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.97 E-value=1.3e-31 Score=194.03 Aligned_cols=116 Identities=15% Similarity=0.075 Sum_probs=89.9
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee----ee--------------eeeeee
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK----IK--------------ASDLIS 67 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~----~~--------------~i~~~~ 67 (127)
+|+++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|...+. ++ .++|++
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEEC
Confidence 7999999987 6999999999999999999999999999999999964332 21 178999
Q ss_pred ecccCCCCcchHHHHHHHHh-h----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 68 RATTSPWPGTTLNLLKEIIK-I----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 68 q~~~~~~~~t~~~~l~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
|++..++..|+.||+.+... . ...+.++.+... ...++.+.+||||||||++|||||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99877667799999986421 1 112233333332 2334556679999999999999997
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=1.2e-31 Score=195.20 Aligned_cols=121 Identities=20% Similarity=0.090 Sum_probs=89.8
Q ss_pred CeeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----ceeee--------------ee
Q psy18211 5 PALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----LCKIK--------------AS 63 (127)
Q Consensus 5 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----~~~~~--------------~i 63 (127)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|.. ++.++ .+
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 46999999999976 46999999999999999999999999999999999953 22221 28
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHH----HHHHHHhHhh---h-------cccCCCCCCcccchhhhhHhhhh
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVC----KVKELGKKIL---L-------SQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~----~~~~~~~~~~---~-------~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
+|++|++..+ +.|++||+.+.......+ .++.+..... + ..+.+.+|||||||||+|||||+
T Consensus 96 ~~v~Q~~~l~-~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 96 GIVPQDTILF-NETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCccc-ccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 9999998654 579999998743211122 2222111110 0 12345679999999999999997
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.7e-31 Score=194.70 Aligned_cols=119 Identities=14% Similarity=0.044 Sum_probs=91.5
Q ss_pred eeeeceeEEEeCC----CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC----ceeee-----------eee-e
Q psy18211 6 ALEGREVILVARP----EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD----LCKIK-----------ASD-L 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~----~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~----~~~~~-----------~i~-~ 65 (127)
||+++|++++|++ +++|+|+||+|+ ||+++|+||||||||||+|+|+|.. ++.++ .++ |
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence 4899999999987 789999999999 9999999999999999999999964 22221 377 9
Q ss_pred eeecccCCCCcchHHHHHHHHh--hhhH----HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIK--IQTV----CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ..|+.||+.+... .... +.++.+.......++.+.+||||||||++|||||++
T Consensus 80 v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~ 145 (263)
T 2pjz_A 80 LPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALAS 145 (263)
T ss_dssp CGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHT
T ss_pred eCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 9998765 7899999987542 1122 233333332022345566799999999999999974
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=3e-31 Score=202.53 Aligned_cols=120 Identities=20% Similarity=0.162 Sum_probs=91.4
Q ss_pred eeeeceeEEEe--CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc----eeee--------------eeee
Q psy18211 6 ALEGREVILVA--RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL----CKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~--~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~----~~~~--------------~i~~ 65 (127)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|... +.++ .++|
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEE
Confidence 59999999999 66889999999999999999999999999999999999632 2222 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHhhhcccCCCC-----------CCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKILLSQVKGKN-----------MSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----------LSgGekqrv~ia~aL~~ 127 (127)
+||++..+ ++|++||+...... ...+.++.+... .+.++.+.+ |||||||||+|||||++
T Consensus 99 v~Q~~~lf-~~tv~enl~~~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 99 IPQKVFIF-SGTFRKNLDPNAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp ESCCCCCC-SEEHHHHHCTTCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred EcCCcccC-ccCHHHHhhhccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 99998654 57999998643211 122233333332 233444444 99999999999999974
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=7.9e-30 Score=202.85 Aligned_cols=121 Identities=17% Similarity=0.201 Sum_probs=91.4
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------~i~ 64 (127)
+++++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|. |++.++ .++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE
Confidence 6999999999974 6899999999999999999999999999999999994 333332 289
Q ss_pred eeeecccCCCCcchHHHHHHHH-hhhhHHHHHH----HHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEII-KIQTVCKVKE----LGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~----~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++..+ +.|++||+.+.. ....++.+.+ ....... ..+.+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 421 LVSQNVHLF-NDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred EEcCCCccc-cccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 999998654 569999998754 2222222222 2211111 122345799999999999999974
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=8.7e-30 Score=202.62 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=91.0
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~ 64 (127)
+|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.++ .++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 6999999999974 789999999999999999999999999999999999532 2222 289
Q ss_pred eeeecccCCCCcchHHHHHHHH-hhhhHHHHHHHHhHh----h----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEII-KIQTVCKVKELGKKI----L----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~-~~~~~~~~~~~~~~~----~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++..+ +.|++||+.+.. ....++.+.+..... . ...+.+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 421 LVSQNVHLF-NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp EECSSCCCC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEccCCcCC-CCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999998654 569999998754 222222222221111 0 1123445799999999999999973
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1e-29 Score=202.53 Aligned_cols=121 Identities=21% Similarity=0.160 Sum_probs=90.9
Q ss_pred eeeeceeEEEeC--CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eee
Q psy18211 6 ALEGREVILVAR--PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~--~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~ 64 (127)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|..+ +.++ .++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 599999999995 4679999999999999999999999999999999999533 3332 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHH----HHHHhHh----------hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKV----KELGKKI----------LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~----~~~~~~~----------~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|+||++.. ++.|++||+.+......++.+ +...... ....+.+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 421 AVPQETVL-FSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EECSSCCC-CSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EECCCCcC-cCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 99999865 467999999875432222221 1111110 11234456799999999999999974
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=9.4e-30 Score=202.33 Aligned_cols=121 Identities=18% Similarity=0.117 Sum_probs=90.0
Q ss_pred eeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eee
Q psy18211 6 ALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASD 64 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~ 64 (127)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.++ .++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 5899999999964 579999999999999999999999999999999999533 2332 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhhhhHHHHHHHH----hHhh----------hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKIQTVCKVKELG----KKIL----------LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~----~~~~----------~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+ +.|++||+.+......++.+.+.. .... .....+.+||||||||++|||||++
T Consensus 419 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 419 LVQQDNILF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EECSSCCCC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCccC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 999997654 569999998754322222222211 1110 1123345699999999999999963
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=5.4e-29 Score=183.73 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=76.5
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee-----ee-eeeeeeecccCCCCcch
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK-----IK-ASDLISRATTSPWPGTT 78 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~-----~~-~i~~~~q~~~~~~~~t~ 78 (127)
++|+++|+++. .+++|+++||+|++||+++|+||||||||||+|+|+|...+. ++ .++|++|++..+ +.|+
T Consensus 39 ~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~-~~tv 115 (290)
T 2bbs_A 39 DSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM-PGTI 115 (290)
T ss_dssp -------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCC-SSBH
T ss_pred ceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccC-cccH
Confidence 46899999985 468999999999999999999999999999999999965433 32 389999997654 4699
Q ss_pred HHHHHHHHhhh---hHHHHHHHHhHhhh----------cccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEIIKIQ---TVCKVKELGKKILL----------SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+||+. ..... ..+.++.......+ ....+.+||||||||++|||||++
T Consensus 116 ~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~ 176 (290)
T 2bbs_A 116 KENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 176 (290)
T ss_dssp HHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHS
T ss_pred HHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHC
Confidence 99997 42111 11112211111001 112235699999999999999974
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=3.2e-29 Score=199.82 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=90.0
Q ss_pred eeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eee
Q psy18211 7 LEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASD 64 (127)
Q Consensus 7 l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~ 64 (127)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.++ .++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 899999999975 369999999999999999999999999999999999532 2222 289
Q ss_pred eeeecccCCCCcchHHHHHHHHhh---hhHHHHHHHHhHhh-----------hc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 65 LISRATTSPWPGTTLNLLKEIIKI---QTVCKVKELGKKIL-----------LS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 65 ~~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~~~~~~~~~-----------~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
|++|++..+ +.|++||+.+.... ..++.+.+...... +. .+.+.+||||||||++|||||++
T Consensus 422 ~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 422 TVSQEPILF-SCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EECSSCCCC-SSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEccCCccc-CCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 999998664 56999999875432 22333332221110 11 12346799999999999999973
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.1e-29 Score=201.06 Aligned_cols=121 Identities=19% Similarity=0.214 Sum_probs=90.1
Q ss_pred eeeeceeEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------eeee
Q psy18211 6 ALEGREVILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------ASDL 65 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i~~ 65 (127)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|..+ +.++ .++|
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 4899999999974 679999999999999999999999999999999999543 3332 2899
Q ss_pred eeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh----hhc----------ccCCCCCCcccchhhhhHhhhhC
Q psy18211 66 ISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI----LLS----------QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 66 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~----~~~----------~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
++|++.. ++.|++||+.+......++.+.+..... ... ...+.+||||||||++|||||++
T Consensus 434 v~Q~~~l-f~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~ 508 (598)
T 3qf4_B 434 VLQDTIL-FSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508 (598)
T ss_dssp ECTTCCC-CSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred EeCCCcc-ccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999765 4679999998754322222222221111 011 12234699999999999999974
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=1.2e-28 Score=210.15 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------e
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------i 63 (127)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|. |++.+++ +
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4899999999964 4699999999999999999999999999999999995 3444433 8
Q ss_pred eeeeecccCCCCcchHHHHHHHH--hhhhHHHHHHHHhHh-----------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEII--KIQTVCKVKELGKKI-----------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~--~~~~~~~~~~~~~~~-----------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+++||++.. |+.|++||+.+.. ....++.+.+..... .++ ...+.+||||||||++|||||++
T Consensus 1156 ~~V~Qdp~L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A 1156 AIVSQEPTL-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp EEECSSCCC-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred EEECCCCEe-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence 999999854 6789999997653 122333333322211 111 22345799999999999999985
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.95 E-value=1.1e-27 Score=204.25 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=93.4
Q ss_pred eeeeceeEEEeC---CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee--------------ee
Q psy18211 6 ALEGREVILVAR---PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK--------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~---~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~--------------~i 63 (127)
.|+++|++++|+ ++++|+|+||+|++|++++|+||+|||||||+++|.|.. ++.++ .+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 489999999996 467999999999999999999999999999999999954 33333 28
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHhHh-----------h---hcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGKKI-----------L---LSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++.. +..|++||+.++.+...++.+.+..... . .....+.+||||||||++|||||++
T Consensus 495 ~~v~Q~~~L-f~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPAL-FNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCccee-eCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 999999854 6779999999876443333333322211 0 1123445799999999999999975
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=2.4e-27 Score=201.81 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=90.4
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeeee--------------e
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIKA--------------S 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~~--------------i 63 (127)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+++ +
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 4899999999974 469999999999999999999999999999999999533 33322 8
Q ss_pred eeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHH----hHh-------hh---cccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELG----KKI-------LL---SQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~----~~~-------~~---~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|++|++.. ++.|++||+.++.....++.+.+.. ... .. ....+.+||||||||++|||||++
T Consensus 467 ~~v~Q~~~l-~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 467 GVVSQEPVL-FATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp EEECSSCCC-CSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcc-CCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 999999865 4569999999865322222222111 110 11 123445699999999999999973
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=4e-27 Score=188.23 Aligned_cols=121 Identities=15% Similarity=0.150 Sum_probs=93.1
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee---e---eeeeeeeecccCCCCcch
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK---I---KASDLISRATTSPWPGTT 78 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~---~---~~i~~~~q~~~~~~~~t~ 78 (127)
++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|...+. + ..++|+||+....+..|+
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv 434 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTV 434 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcH
Confidence 479999999999775 789999999999999999999999999999999954322 2 248999999877778899
Q ss_pred HHHHHHH-Hh-hh----hHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEI-IK-IQ----TVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~-~~-~~----~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+++... .. .. ..+.++.+... ...++...+|||||||||+|||||++
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 8887654 11 11 12233334333 33455566799999999999999974
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=8.9e-27 Score=184.07 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=92.0
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCcee-----e-eeeeeeeecccCCCCcch
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCK-----I-KASDLISRATTSPWPGTT 78 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~-----~-~~i~~~~q~~~~~~~~t~ 78 (127)
++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|...+. + ..++|++|+....+..|+
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBH
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcH
Confidence 479999999999764 689999999999999999999999999999999954332 2 248999999876677899
Q ss_pred HHHHHHH-Hhh-hhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 79 LNLLKEI-IKI-QTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 79 ~~~l~~~-~~~-~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+++... ... ...+.+.++.... ...++.+.+|||||||||+|||||++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 8887653 111 1122233322222 23355556799999999999999974
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=1.3e-26 Score=183.06 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=91.4
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce-----eee--eeeeeeecccCCCCcc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC-----KIK--ASDLISRATTSPWPGT 77 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~-----~~~--~i~~~~q~~~~~~~~t 77 (127)
++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|...+ .+. .++|++|+....+..|
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~t 346 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGT 346 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred ceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCC
Confidence 468999999999774 58888999999999999999999999999999995433 222 3789999876667789
Q ss_pred hHHHHHHHHhh---hhHHHHHH----HHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKI---QTVCKVKE----LGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.+++...... ......++ +... ...++.+.+|||||||||+|||||++
T Consensus 347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 347 VQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp HHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99998764211 11112222 2322 23455566799999999999999974
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=1.6e-26 Score=196.73 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=89.4
Q ss_pred eeeeceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee--------------ee
Q psy18211 6 ALEGREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK--------------AS 63 (127)
Q Consensus 6 ~l~~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~--------------~i 63 (127)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|..+ +.++ .+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 4899999999975 369999999999999999999999999999999999543 2222 28
Q ss_pred eeeeecccCCCCcchHHHHHHHHhh--hh----HHHHHHHHhHh-------hhc---ccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 DLISRATTSPWPGTTLNLLKEIIKI--QT----VCKVKELGKKI-------LLS---QVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 ~~~~q~~~~~~~~t~~~~l~~~~~~--~~----~~~~~~~~~~~-------~~~---~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+|+||++. .++.|++||+.+.... .. .+.++...... .+. ...+.+||||||||++|||||++
T Consensus 1110 ~~v~Q~~~-l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1110 GIVSQEPI-LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp EEEESSCC-CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEECCCCc-cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 99999985 4577999999764321 11 12222221111 111 12345699999999999999973
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=1.9e-25 Score=185.26 Aligned_cols=122 Identities=18% Similarity=0.083 Sum_probs=88.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc-CC--ce--eeeeeeeeeecc-cCCCCcchH
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ-SD--LC--KIKASDLISRAT-TSPWPGTTL 79 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g-~~--~~--~~~~i~~~~q~~-~~~~~~t~~ 79 (127)
.|...|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+| .. .. ....++|++|+. ..+...|+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv~ 514 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVL 514 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBHH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccCCcHH
Confidence 3666799999999999999999999999999999999999999999995 21 11 011357777764 345567999
Q ss_pred HHHHHHH---hhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 80 NLLKEII---KIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 80 ~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+++.+.. .....+.++.++......++...+||||||||++|||||++
T Consensus 515 e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 515 DFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp HHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 9986411 11122334444432123345556699999999999999974
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.92 E-value=3.6e-25 Score=183.65 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=56.3
Q ss_pred CeeeeceeEEEeCC--CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-----eeee---eeeeeeecc
Q psy18211 5 PALEGREVILVARP--EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-----CKIK---ASDLISRAT 70 (127)
Q Consensus 5 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-----~~~~---~i~~~~q~~ 70 (127)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|... +.++ .++|++|+.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~ 745 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHA 745 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHH
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccch
Confidence 47999999999975 689999999999999999999999999999999999643 3332 367887764
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=5e-25 Score=176.14 Aligned_cols=120 Identities=15% Similarity=0.072 Sum_probs=85.5
Q ss_pred eeee--------ceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee---------------
Q psy18211 6 ALEG--------REVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK--------------- 61 (127)
Q Consensus 6 ~l~~--------~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~--------------- 61 (127)
+|++ +|++++|+++ .+++++| +|++||+++|+||||||||||+|+|+|...+..+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5777 9999999876 4999999 9999999999999999999999999994322110
Q ss_pred ---------------eeeeeeecccCC---CCcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhH
Q psy18211 62 ---------------ASDLISRATTSP---WPGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 62 ---------------~i~~~~q~~~~~---~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia 122 (127)
.+++++|..... +..++.+++..... ....+.++.++.. ...++...+|||||||||+||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIA 240 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIA 240 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHH
Confidence 134555543211 12378888754211 1234455555554 334555667999999999999
Q ss_pred hhhhC
Q psy18211 123 YSLIK 127 (127)
Q Consensus 123 ~aL~~ 127 (127)
|||++
T Consensus 241 raL~~ 245 (607)
T 3bk7_A 241 AALLR 245 (607)
T ss_dssp HHHHS
T ss_pred HHHhc
Confidence 99974
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.91 E-value=8.9e-25 Score=172.65 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=81.7
Q ss_pred eee-ceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceee--------------e---------
Q psy18211 7 LEG-REVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI--------------K--------- 61 (127)
Q Consensus 7 l~~-~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~--------------~--------- 61 (127)
.++ +|++++|+++ .+++++| +|++||+++|+||||||||||+|+|+|...+.. .
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 6899999886 4899999 999999999999999999999999999532211 0
Q ss_pred -------eeeeeeecccCCC---CcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 62 -------ASDLISRATTSPW---PGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 62 -------~i~~~~q~~~~~~---~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.+++++|.....+ ..++.+++..... ....+.++.++.. ...++...+|||||||||+||+||++
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1345555432211 2367777653211 1234455555554 23455566799999999999999974
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-24 Score=173.00 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=87.8
Q ss_pred ceeEEEeCC-CCceeeceeEeecC-----CeEEEECCCCCCHHHHHHHHhcCCceeee------eeeeeeecccCCCCcc
Q psy18211 10 REVILVARP-EPNIVSADLVLSSA-----GDVYLVGCTNVGKSTLFNAFLQSDLCKIK------ASDLISRATTSPWPGT 77 (127)
Q Consensus 10 ~~l~~~~~~-~~~l~~vs~~i~~g-----e~i~liG~nGaGKSTLl~~i~g~~~~~~~------~i~~~~q~~~~~~~~t 77 (127)
+++++.|++ ..+++++||++.+| |+++|+||||||||||+|+|+|...+..+ .++|++|+....++.+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 667888875 45789999999999 78999999999999999999996544432 3899999877777789
Q ss_pred hHHHHHHHHhh------hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 78 TLNLLKEIIKI------QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 78 ~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
+.+++...... ...+.++.+... ...++.+.+|||||||||+|||||++
T Consensus 430 v~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp HHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99987543211 112233334433 34455666799999999999999974
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=2.8e-23 Score=167.39 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=30.7
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
.+++|+||||+|++||+++|+||||||||||+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 56799999999999999999999999999997
No 57
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=9.2e-25 Score=162.06 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=79.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCCCCcchHH-HHHH
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN-LLKE 84 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~~~~t~~~-~l~~ 84 (127)
+|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|...+.+ +.+++|.+.. +..++++ |+.+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I--~~~v~q~~~l-f~~ti~~~ni~~ 176 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV--LSFANHKSHF-WLASLADTRAAL 176 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE--ECGGGTTSGG-GGGGGTTCSCEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceE--EEEecCcccc-ccccHHHHhhcc
Confidence 478999999998 779999999999999999999999999999999999643333 5567776543 3456765 6554
Q ss_pred HHh--hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 85 IIK--IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
... ....+.++.+ ....+ + +..|||||||| ||||++
T Consensus 177 ~~~~~~~~~~~i~~~-L~~gl-d--g~~LSgGqkQR---ARAll~ 214 (305)
T 2v9p_A 177 VDDATHACWRYFDTY-LRNAL-D--GYPVSIDRKHK---AAVQIK 214 (305)
T ss_dssp EEEECHHHHHHHHHT-TTGGG-G--TCCEECCCSSC---CCCEEC
T ss_pred CccccHHHHHHHHHH-hHccC-C--ccCcCHHHHHH---HHHHhC
Confidence 211 1112223331 11112 2 56699999999 999864
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=9.7e-22 Score=158.48 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=33.3
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
...+|+||||+|++||+++|+||||||||||+++|+
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 456899999999999999999999999999998764
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.8e-21 Score=152.65 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.1
Q ss_pred ceeEEEeCCC-CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 10 REVILVARPE-PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 10 ~~l~~~~~~~-~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
+|++++|+.. ..+++++ ++++||+++|+||||||||||||+|+|...+
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P 129 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 4678999765 3566666 6899999999999999999999999996443
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=6.3e-21 Score=150.68 Aligned_cols=116 Identities=16% Similarity=0.057 Sum_probs=72.2
Q ss_pred ceeEEEeCCCCceeeceeEe-ecCCeEEEECCCCCCHHHHHHHHhcCCceeeeee-------------------------
Q psy18211 10 REVILVARPEPNIVSADLVL-SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKAS------------------------- 63 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i-~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i------------------------- 63 (127)
++.+++||.. -|+-..+.+ ++||++||+||||||||||+|+|+|...+..+.+
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4678999754 355555555 4999999999999999999999999533221111
Q ss_pred -------eeeeeccc---CCCCcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 64 -------DLISRATT---SPWPGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 64 -------~~~~q~~~---~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
....|... ..+..++.+++..... ....+.++.+... ...++...+|||||||||+||+||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~ 155 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLR 155 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 11111110 0123356665432211 1233445555544 34455556799999999999999974
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.82 E-value=4.5e-24 Score=165.93 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=79.5
Q ss_pred CCeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----C-c-eeee-----eeeeeeeccc
Q psy18211 4 WPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----D-L-CKIK-----ASDLISRATT 71 (127)
Q Consensus 4 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~-~-~~~~-----~i~~~~q~~~ 71 (127)
.++++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|. | + +.++ .++|+||+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 35789999999985 79999999999999999999999999999995 4 4 4443 3788998764
Q ss_pred C---CCCcchHHHHHHHHhh--h--hHHHHHHHHhHhh---hcccCCCCCCcccchhhhhHhh--hh
Q psy18211 72 S---PWPGTTLNLLKEIIKI--Q--TVCKVKELGKKIL---LSQVKGKNMSKTEKKPLQPQYS--LI 126 (127)
Q Consensus 72 ~---~~~~t~~~~l~~~~~~--~--~~~~~~~~~~~~~---~~~~~~~~LSgGekqrv~ia~a--L~ 126 (127)
. ....++.+|+ +.... . ..+.+..+..... ..+ ..+|||||||||+|||| |+
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhc
Confidence 2 2345788777 43210 0 0011111111111 112 45699999999999999 75
No 62
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.80 E-value=1.6e-22 Score=150.45 Aligned_cols=118 Identities=14% Similarity=-0.037 Sum_probs=81.5
Q ss_pred eeeeceeEEEeCCCCceeeceeE-----------------------eecCCeEEEECCCCCCHHHHHHHHhcCCceee--
Q psy18211 6 ALEGREVILVARPEPNIVSADLV-----------------------LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKI-- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~-----------------------i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~-- 60 (127)
.|+++||++.|+ ++++++++. +++|+++||+||||||||||+++|+|...+.-
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 588999999995 566666664 89999999999999999999999999533221
Q ss_pred eeeeeeeecccCCCCcchHHHHHHHH----hh-hhHHHHHHHHhHh--hhcccCCCCCCcccchhhhhHhhhh
Q psy18211 61 KASDLISRATTSPWPGTTLNLLKEII----KI-QTVCKVKELGKKI--LLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 61 ~~i~~~~q~~~~~~~~t~~~~l~~~~----~~-~~~~~~~~~~~~~--~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
..+++++|+.... +.++.+++.+.. .. ...+.+.++.... ...+....+||+||+||+++|++++
T Consensus 121 ~~v~~v~qd~~~~-~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~ 192 (312)
T 3aez_A 121 PRVDLVTTDGFLY-PNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVV 192 (312)
T ss_dssp CCEEEEEGGGGBC-CHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEEecCccCC-cccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhc
Confidence 3488999987654 448888875421 11 1122222222211 1222333459999999999999876
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=2.2e-18 Score=142.66 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=30.1
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
....|+||||+|++|++++|+|+||||||||+
T Consensus 596 ~~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 596 RHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp CSTTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 45689999999999999999999999999997
No 64
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=4.2e-19 Score=127.26 Aligned_cols=105 Identities=11% Similarity=-0.050 Sum_probs=60.2
Q ss_pred eCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-Cceee----eeeeeeeecccCCCCcchHHHHHHHHh---
Q psy18211 16 ARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-DLCKI----KASDLISRATTSPWPGTTLNLLKEIIK--- 87 (127)
Q Consensus 16 ~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-~~~~~----~~i~~~~q~~~~~~~~t~~~~l~~~~~--- 87 (127)
-+++++|+|+||++++|+++||+||||||||||+++|+|. +.+.+ ..+++++|+. .+...++.+++.....
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~ 87 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKGQYN 87 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCC
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc-CccccCHhHhhhhhccCCC
Confidence 4567899999999999999999999999999999999994 55432 2477898884 5556688887765321
Q ss_pred ----hh-hHHHHHHHHh-HhhhcccCCCCCCcccchhhhh
Q psy18211 88 ----IQ-TVCKVKELGK-KILLSQVKGKNMSKTEKKPLQP 121 (127)
Q Consensus 88 ----~~-~~~~~~~~~~-~~~~~~~~~~~LSgGekqrv~i 121 (127)
.. ..+.+.+... ...........||+||+||+.+
T Consensus 88 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 88 FDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS
T ss_pred CCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc
Confidence 11 1111222111 1122233334599999999977
No 65
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.75 E-value=1.3e-18 Score=142.97 Aligned_cols=45 Identities=24% Similarity=0.231 Sum_probs=40.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHH-Hhc
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNA-FLQ 54 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~-i~g 54 (127)
+.|+++|+++ .+|+||||+|++||+++|+|+||||||||+++ |+|
T Consensus 501 ~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 501 GWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp CEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred ceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 4689999986 27999999999999999999999999999996 654
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.74 E-value=3.8e-18 Score=141.69 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=38.7
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+.|++++++. .+|+||||+|++||+++|+|+||||||||+++|+
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc-----ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4688888753 3799999999999999999999999999999863
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.74 E-value=2.4e-18 Score=142.51 Aligned_cols=44 Identities=27% Similarity=0.231 Sum_probs=38.6
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+.|++++++. ..|+||||+|+.||+++|+|+||||||||+++|+
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3578888753 4799999999999999999999999999999864
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.74 E-value=1.7e-18 Score=118.18 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=55.4
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee--eeeeeeecccCCC-CcchHHHHHHHHhhhhHHHHHHHHhH
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK--ASDLISRATTSPW-PGTTLNLLKEIIKIQTVCKVKELGKK 100 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~--~i~~~~q~~~~~~-~~t~~~~l~~~~~~~~~~~~~~~~~~ 100 (127)
|+||++++||+++|+||||||||||+|++.+....... -.++++|++.... ..++.+.+... . .........
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~g~~ 75 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYI----V-SKRLQLGKL 75 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHH----H-HHHHHTTCC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHH----H-HHHHhCCCe
Confidence 68999999999999999999999999987653211110 0345555432211 01111211110 0 000111111
Q ss_pred hhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 101 ILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 101 ~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
...+.... .|+|||||++||+||.
T Consensus 76 -~~~~~~~~-~s~g~~qrv~iAral~ 99 (171)
T 4gp7_A 76 -TVVDATNV-QESARKPLIEMAKDYH 99 (171)
T ss_dssp -EEEESCCC-SHHHHHHHHHHHHHTT
T ss_pred -EEEECCCC-CHHHHHHHHHHHHHcC
Confidence 12233333 7999999999999986
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.74 E-value=2.8e-20 Score=131.25 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=34.2
Q ss_pred EEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 14 LVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 14 ~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|+++++|+++ ++||+++|+||||||||||+++|+|.
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346777899996 89999999999999999999999996
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=8.9e-20 Score=129.07 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.+.-|+|+||+|++|++++|+||||||||||+++|+|..
T Consensus 9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456799999999999999999999999999999999953
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=1.3e-19 Score=132.28 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC-----Cceee-----------eeeeeeeecccCCCCcchHHHHHHHHhh---hhHHHH
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS-----DLCKI-----------KASDLISRATTSPWPGTTLNLLKEIIKI---QTVCKV 94 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~-----~~~~~-----------~~i~~~~q~~~~~~~~t~~~~l~~~~~~---~~~~~~ 94 (127)
.++|+||||||||||+|+|+|. |++.+ ..+++++|+......+|+.|++.+.... ...+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4789999999999999999993 22211 2488999988777778898887765421 112233
Q ss_pred HHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 95 KELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 95 ~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.+.... ...+....+||||||||+++|||++
T Consensus 84 ~~~~~~-~~~~~~~~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 84 EKYINE-QYEKFLKEEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp HHHHHH-HHHHHHHHHSCTTCCSSCCCCSCCE
T ss_pred HHHHHH-HHHhhhHHhcCcccchhhhhheeee
Confidence 333322 2333444569999999999999875
No 72
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.69 E-value=3.8e-19 Score=136.58 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=73.5
Q ss_pred CCceeeceeEeecCC--------------------eEEEECCCCCCHHHHHHHHhcC-----Cceeeee-----eeeeee
Q psy18211 19 EPNIVSADLVLSSAG--------------------DVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA-----SDLISR 68 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge--------------------~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~-----i~~~~q 68 (127)
+.+++++||++++|+ +++|+||||||||||+|+|+|. |.+.+++ .++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999993 3333332 367888
Q ss_pred cccCCCCcchHHHHHHHHh-hhhHHHHHHHHhHhhhcccCCCCCCcc--cchhhhhHhhhh
Q psy18211 69 ATTSPWPGTTLNLLKEIIK-IQTVCKVKELGKKILLSQVKGKNMSKT--EKKPLQPQYSLI 126 (127)
Q Consensus 69 ~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~LSgG--ekqrv~ia~aL~ 126 (127)
++ .++..++.|++.+... ....+.++.+.... . +.... ||+| ||||+.||++|.
T Consensus 116 ~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~-~-~~~~~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE-Y-DFFII-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp CS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGG-C-SEEEE-EESSCCCHHHHHHHHHHH
T ss_pred cc-ccCCeeehHhhcccchHHHHHHHHHHcCCCc-c-CCeEE-eCCCCccHHHHHHHHHHH
Confidence 74 3445677776644321 12234444443321 1 23334 9999 999999999986
No 73
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.69 E-value=3.4e-19 Score=120.83 Aligned_cols=77 Identities=19% Similarity=0.048 Sum_probs=61.8
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC----Cceeeee---------eeeeeecccCC
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS----DLCKIKA---------SDLISRATTSP 73 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~----~~~~~~~---------i~~~~q~~~~~ 73 (127)
++.+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|. |++.+.+ ..+++|+...+
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 5567788999888899999999999999999999999999999999993 2222211 13678887666
Q ss_pred CCcchHHHHHH
Q psy18211 74 WPGTTLNLLKE 84 (127)
Q Consensus 74 ~~~t~~~~l~~ 84 (127)
.+++.|++.+
T Consensus 88 -~ltv~e~l~~ 97 (158)
T 1htw_A 88 -RLADPEELEF 97 (158)
T ss_dssp -TCSCTTHHHH
T ss_pred -cCCcHHHHHH
Confidence 7889888754
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.67 E-value=1.1e-18 Score=135.02 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=74.8
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeee----------------------
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK---------------------- 61 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~---------------------- 61 (127)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|...+..+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3689999999998 67899999 99999999999999999999999999994322111
Q ss_pred -----eeeeeeeccc-CCCCcchHHHHHHHHhhhhHHHHHHHHhHh-hhcccCCCCCCcccchhhhhH
Q psy18211 62 -----ASDLISRATT-SPWPGTTLNLLKEIIKIQTVCKVKELGKKI-LLSQVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 62 -----~i~~~~q~~~-~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~LSgGekqrv~ia 122 (127)
.++|++|... .....++.+++....... ....... .+.+. ...||+|| ||++||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~-----~~~~~~v~~~ld~-l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDF-----RDRGQHVLLIMDS-LTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHH-----HTTTCEEEEEEEC-HHHHHHHH-HHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHH-----HhCCCCHHHHHHh-HHHHHHHH-HHHHHH
Confidence 1467776422 222346666665433211 1101111 12233 34599999 999998
No 75
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.67 E-value=4.1e-17 Score=124.28 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+..++++++|++.+| +++|+|||||||||||++|++
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999 999999999999999999954
No 76
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=2.7e-18 Score=126.92 Aligned_cols=107 Identities=14% Similarity=0.027 Sum_probs=50.7
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-Ccee---------------eeeeeeeeecccCC
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-DLCK---------------IKASDLISRATTSP 73 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-~~~~---------------~~~i~~~~q~~~~~ 73 (127)
+||++.|+++.++++++|+| +|+|+||||||||++.|.|. ..+. ...+++++|.....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~ 75 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVK 75 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC---CC
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcc
Confidence 58999999999999999998 99999999999999999985 2111 12256677665544
Q ss_pred CCcchHHHHHHHHhh----hhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhh
Q psy18211 74 WPGTTLNLLKEIIKI----QTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSL 125 (127)
Q Consensus 74 ~~~t~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL 125 (127)
..+++.|+..+.... ........+. ...+....++|||+|||+.+|||+
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~---~~~~~~~~~~sgg~rqrv~~ara~ 128 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYID---EQFERYLHDESGLNRRHIIDNRVH 128 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHH---HHHHHHHHHHTSSCCTTCCCCCCC
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHH---HHHHHHHHHhCHHhhhhhhhhhhh
Confidence 455665554432110 0011111111 112234445999999999999975
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.64 E-value=1.3e-18 Score=128.76 Aligned_cols=107 Identities=7% Similarity=-0.006 Sum_probs=67.2
Q ss_pred eCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------------eeeeeeecc
Q psy18211 16 ARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------------ASDLISRAT 70 (127)
Q Consensus 16 ~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------------~i~~~~q~~ 70 (127)
++....+.++||++++|++++|+||||||||||++.|+|. +++.+. +++|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 4444345689999999999999999999999999999992 222221 367888877
Q ss_pred c-CCCCcchHHHHHHHHhhhhH-HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 71 T-SPWPGTTLNLLKEIIKIQTV-CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 71 ~-~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
. ..+..++.+++.+......+ ..++.++.. ...+....+|| |||++|||||+
T Consensus 164 ~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~ 217 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKEEGYDVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVS 217 (302)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCSEEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTST
T ss_pred CccCHHHHHHHHHHHHHHcCCcchHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhc
Confidence 6 55556788888764321100 000001110 11222334588 99999999986
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.61 E-value=6.1e-17 Score=121.93 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=51.8
Q ss_pred CeeeeceeEEEeC-CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeee
Q psy18211 5 PALEGREVILVAR-PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDL 65 (127)
Q Consensus 5 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~ 65 (127)
++++.+++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|...+..+.+.+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 3689999999998 67899999 999999999999999999999999999965555443333
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.57 E-value=4.1e-17 Score=123.38 Aligned_cols=100 Identities=8% Similarity=0.006 Sum_probs=65.9
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceee--------------------eeeeeeeeccc-CCCCc
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------------KASDLISRATT-SPWPG 76 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------------~~i~~~~q~~~-~~~~~ 76 (127)
.++||++++|++++|+||||||||||++.|+|. +++.+ .+++|++|+.. ..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 578999999999999999999999999999992 22222 12678888765 55556
Q ss_pred chHHHHHHHHhhhhH-HHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 77 TTLNLLKEIIKIQTV-CKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 77 t~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
++.+++.+......+ ..++.++.. ...+....+|| |||++|||||+
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~ 274 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVS 274 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHST
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHh
Confidence 788888764321100 000000100 11222334588 99999999986
No 80
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.55 E-value=5.8e-17 Score=111.64 Aligned_cols=74 Identities=15% Similarity=0.027 Sum_probs=45.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCceeee--------------eeeeeeecccCCCCcchHHHHHHHHhhhhHHHHHHHHh
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIK--------------ASDLISRATTSPWPGTTLNLLKEIIKIQTVCKVKELGK 99 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~~~~~~--------------~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 99 (127)
+++|+||||||||||+++|+|...+.+. .++|++|+.. +.+++ +. .+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~~----------~~~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-FS----------SKFF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-EE----------ETTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-HH----------hhcC
Confidence 6899999999999999999995322221 2455555431 11111 00 0000
Q ss_pred H-hhhcccCCCCCCcccchhhhhHhh
Q psy18211 100 K-ILLSQVKGKNMSKTEKKPLQPQYS 124 (127)
Q Consensus 100 ~-~~~~~~~~~~LSgGekqrv~ia~a 124 (127)
. .....+...+||||||||++||+|
T Consensus 65 ~~~~~~~~~~~~lSgG~~qr~~la~a 90 (178)
T 1ye8_A 65 TSKKLVGSYGVNVQYFEELAIPILER 90 (178)
T ss_dssp CCSSEETTEEECHHHHHHHHHHHHHH
T ss_pred CccccccccccCcCHHHHHHHHHHhh
Confidence 0 012334445699999999999996
No 81
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=3e-16 Score=120.74 Aligned_cols=110 Identities=12% Similarity=0.051 Sum_probs=60.2
Q ss_pred CeeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc--e-------------eeeeeeeeeec
Q psy18211 5 PALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL--C-------------KIKASDLISRA 69 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~--~-------------~~~~i~~~~q~ 69 (127)
.+|.++|+++.|+++.++++++|+| +|+|+||||||||+++|+|... . ....+++++|.
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~ 83 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 83 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC---
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEec
Confidence 4699999999999999999999998 9999999999999999999532 1 11236677776
Q ss_pred ccCCCCcchHHHHHHHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 70 TTSPWPGTTLNLLKEIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 70 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
......+++.|++.+............+... +. ..++.+.+||++|||+++
T Consensus 84 ~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~--i~----~~~~~~l~qr~~IaRal~ 134 (418)
T 2qag_C 84 GGVQLLLTIVDTPGFGDAVDNSNCWQPVIDY--ID----SKFEDYLNAESRVNRRQM 134 (418)
T ss_dssp ---CEEEEEEECC-----------CHHHHHH--HH----HHHHHHTTTSCC-CCCCC
T ss_pred CCcccceeeeechhhhhhccchhhHHHHHHH--HH----HHHHHHHHHHHHHHHHhc
Confidence 5554456677766543211000000000000 00 124556778888888765
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.53 E-value=5.3e-16 Score=116.02 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=35.2
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
++++++|++++|+.++|+||||||||||+++|+|...+
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~ 197 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK 197 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 78999999999999999999999999999999996443
No 83
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.53 E-value=1.4e-16 Score=122.53 Aligned_cols=47 Identities=28% Similarity=0.265 Sum_probs=41.2
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++++.+.|+...+|+++ +. ++|++++|+|||||||||||++|+|
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 46778888888777788888 54 8999999999999999999999999
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.52 E-value=3e-17 Score=129.18 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=43.3
Q ss_pred CeeeeceeEEEeCCCCceeecee-EeecCCeEEEECCCCCCHHHHHHH--Hhc
Q psy18211 5 PALEGREVILVARPEPNIVSADL-VLSSAGDVYLVGCTNVGKSTLFNA--FLQ 54 (127)
Q Consensus 5 ~~l~~~~l~~~~~~~~~l~~vs~-~i~~ge~i~liG~nGaGKSTLl~~--i~g 54 (127)
++++.+++.+.+++.++|++++| .|++|++++|+||||||||||+++ ++|
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46788888777778899999999 999999999999999999999999 567
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.52 E-value=2.9e-14 Score=107.83 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=30.2
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
..++++++++.+| +++|+|||||||||||.+|+
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4567899999998 89999999999999999998
No 86
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=7.8e-16 Score=118.52 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=54.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCe--EEEECCCCCCHHHHHHHHhcCC---c--------eeeeeeeeeeecccC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGD--VYLVGCTNVGKSTLFNAFLQSD---L--------CKIKASDLISRATTS 72 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~--i~liG~nGaGKSTLl~~i~g~~---~--------~~~~~i~~~~q~~~~ 72 (127)
.+++++ ++.|++.+ ++++||++++|++ ++|+||||||||||+|+|+|.. . .....++|++|+...
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 477788 89998888 9999999999999 9999999999999999999952 1 112348899988765
Q ss_pred CCCcchHHHHH
Q psy18211 73 PWPGTTLNLLK 83 (127)
Q Consensus 73 ~~~~t~~~~l~ 83 (127)
.+.+|+.|++.
T Consensus 94 ~~~ltv~D~~~ 104 (427)
T 2qag_B 94 RLKLTIVSTVG 104 (427)
T ss_dssp EEEEEEEEEEC
T ss_pred ccccchhhhhh
Confidence 44556655543
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=4.3e-15 Score=103.57 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=59.6
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecccCC--CCcchHHHHHHHHh---hhhHH----HHHHHHh
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSP--WPGTTLNLLKEIIK---IQTVC----KVKELGK 99 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~~~~--~~~t~~~~l~~~~~---~~~~~----~~~~~~~ 99 (127)
.++|++++|+||||||||||+++|+|...+ .++|++|+.... ...++.++..+... ....+ .++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLR 79 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHc
Confidence 578999999999999999999999996322 477888876543 23467776554221 11122 2222222
Q ss_pred HhhhcccCCCCCCcccc----hhhhhHhhhh
Q psy18211 100 KILLSQVKGKNMSKTEK----KPLQPQYSLI 126 (127)
Q Consensus 100 ~~~~~~~~~~~LSgGek----qrv~ia~aL~ 126 (127)
. .....+...+|+||+ ||+.+|++++
T Consensus 80 ~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li 109 (211)
T 3asz_A 80 G-LPVEMPVYDFRAYTRSPRRTPVRPAPVVI 109 (211)
T ss_dssp T-CCEEECCEETTTTEECSSCEEECCCSEEE
T ss_pred C-CCcCCCcccCcccCCCCCeEEeCCCcEEE
Confidence 2 122334556999974 6888888764
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.47 E-value=6.1e-15 Score=109.60 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=32.6
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
|+++| .+.|+ +++++++.+| +++|+||||||||||+++|.
T Consensus 6 L~i~n-fr~~~-----~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 6 LYLKG-FKSFG-----RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEES-BTTBC-----SCEEEECCSS-EEEEECCTTTCSTHHHHHHH
T ss_pred EEEeC-ceeec-----CCeEEecCCC-cEEEECCCCCcHHHHHHHHH
Confidence 56666 23442 3578888899 99999999999999999998
No 89
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.45 E-value=2e-14 Score=98.57 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=25.8
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++|++++|+||||||||||+++|++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999999995
No 90
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=1.3e-14 Score=109.53 Aligned_cols=105 Identities=12% Similarity=-0.022 Sum_probs=63.5
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc-eeee----------------eeeeeeecccCCCCcchHHHHH
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL-CKIK----------------ASDLISRATTSPWPGTTLNLLK 83 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~-~~~~----------------~i~~~~q~~~~~~~~t~~~~l~ 83 (127)
-++++++. .+|++++|+||||||||||+|+|+|... +..+ .+++++|........+++++..
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 46777775 4899999999999999999999999544 3221 2466666544333335555311
Q ss_pred HHHh-hhhHHHHHHHHhHh---hhcccCCCCCCcccchhhhhHhhhhC
Q psy18211 84 EIIK-IQTVCKVKELGKKI---LLSQVKGKNMSKTEKKPLQPQYSLIK 127 (127)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~~---~~~~~~~~~LSgGekqrv~ia~aL~~ 127 (127)
.... ......+.++.... .+.+....++| ||+||++||++++.
T Consensus 284 ~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 284 WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 1000 01111122222221 22344455699 99999999998863
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.42 E-value=7.3e-15 Score=102.63 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=33.3
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc---------------eeeeeeeeeeecccC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL---------------CKIKASDLISRATTS 72 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~---------------~~~~~i~~~~q~~~~ 72 (127)
.+++++ .+|++||+++|+||||||||||+|+|+|... ....+++|++|++..
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 75 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR 75 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH
Confidence 457777 6999999999999999999999999999531 112347888886543
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.39 E-value=1.3e-14 Score=107.55 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=54.9
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC-----Cceee--------------------eeeeeeeecccCCCCcchHHHHHHH
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKI--------------------KASDLISRATTSPWPGTTLNLLKEI 85 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~--------------------~~i~~~~q~~~~~~~~t~~~~l~~~ 85 (127)
+|++++|+||||||||||+++|+|. +++.+ .+++|++|+....+..++.+++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999983 22221 1267777776555555677776543
Q ss_pred HhhhhHHHHHHHHhHhhhcccCC------CCCCcccchhhhhHhhhh
Q psy18211 86 IKIQTVCKVKELGKKILLSQVKG------KNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~------~~LSgGekqrv~ia~aL~ 126 (127)
.... ....+.+..+ ..++..++||++|||||.
T Consensus 181 ~~~~---------~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~ 218 (304)
T 1rj9_A 181 KARG---------YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP 218 (304)
T ss_dssp HHHT---------CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCT
T ss_pred HhCC---------CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhc
Confidence 2110 0001111111 113445589999999986
No 93
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=2.7e-14 Score=97.82 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++|+|+||||||||+++|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999995
No 94
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=6.8e-15 Score=110.27 Aligned_cols=49 Identities=27% Similarity=0.112 Sum_probs=46.7
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++++++.|+.+.++++++|++.+|++++|+|+||||||||+++|+|
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999988889999999999999999999999999999999997
No 95
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.35 E-value=6e-14 Score=101.33 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=35.3
Q ss_pred Ceeeecee-EEEe-CCCCceeeceeEeec---CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 5 PALEGREV-ILVA-RPEPNIVSADLVLSS---AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 5 ~~l~~~~l-~~~~-~~~~~l~~vs~~i~~---ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++|+++|+ ++.| ++.++|+++||+|.+ |++++|+|++||||||+.++|++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 47999999 9999 778899999999999 99999999999999999999998
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.35 E-value=5.2e-14 Score=110.70 Aligned_cols=109 Identities=8% Similarity=-0.034 Sum_probs=64.1
Q ss_pred eeeceeEEEeCCCCceeec-eeEeecCCeEEEECCCCCCHHHHHHHHhcCCceeeee--eeeeeecccCCCCcchHHHHH
Q psy18211 7 LEGREVILVARPEPNIVSA-DLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKA--SDLISRATTSPWPGTTLNLLK 83 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~v-s~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~--i~~~~q~~~~~~~~t~~~~l~ 83 (127)
+++++++..|++ |+.+ +..+++|++++|+|+||||||||++.++|..... +. +.+.++++. ..+.++..
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~----~~l~~~~~ 329 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR----AQLLRNAY 329 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH----HHHHHHHH
T ss_pred cccceeecChHH---HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH----HHHHHHHH
Confidence 455666655432 2322 5699999999999999999999999999953222 11 345555431 12222221
Q ss_pred HHHhhhhHHHHHHHHhHhhhcccCCCCCCcccchhhhhHhhhh
Q psy18211 84 EIIKIQTVCKVKELGKKILLSQVKGKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LSgGekqrv~ia~aL~ 126 (127)
.. ....+.+..... ....+..+.+||+||+||+.+|+++.
T Consensus 330 ~~--g~~~~~~~~~g~-~~~~~~~p~~LS~g~~q~~~~a~~l~ 369 (525)
T 1tf7_A 330 SW--GMDFEEMERQNL-LKIVCAYPESAGLEDHLQIIKSEIND 369 (525)
T ss_dssp TT--SCCHHHHHHTTS-EEECCCCGGGSCHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHhCCC-EEEEEeccccCCHHHHHHHHHHHHHh
Confidence 00 001111111111 12334445569999999999999875
No 97
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.33 E-value=1.2e-13 Score=104.29 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=54.5
Q ss_pred eeceeEEE---eCC--CCce---------eeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceeee-------
Q psy18211 8 EGREVILV---ARP--EPNI---------VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKIK------- 61 (127)
Q Consensus 8 ~~~~l~~~---~~~--~~~l---------~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~~------- 61 (127)
++++++++ |++ .+++ +++||++++|+.++|+||||||||||+++|+|.. .+.+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 56677776 642 2344 9999999999999999999999999999999942 22222
Q ss_pred -----eeeeee-ecccC--CCCcchHHHHHHHH
Q psy18211 62 -----ASDLIS-RATTS--PWPGTTLNLLKEII 86 (127)
Q Consensus 62 -----~i~~~~-q~~~~--~~~~t~~~~l~~~~ 86 (127)
.+++++ |+... .+..|+++++....
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 266777 55432 24568899988754
No 98
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.1e-15 Score=111.55 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.0
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
....+++++++++++| ++|+||||||||||+++|+|..
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHT
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHc
Confidence 4456889999999999 9999999999999999999943
No 99
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.32 E-value=1.6e-15 Score=110.23 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.5
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++.+.|+...+++++++++++| ++|+||||+|||||+++|++.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3455666676667899999999999 999999999999999999984
No 100
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.32 E-value=3e-14 Score=105.37 Aligned_cols=48 Identities=21% Similarity=0.135 Sum_probs=44.3
Q ss_pred eeeeceeEEEeCCCCceeeceeEe-------------------ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVL-------------------SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i-------------------~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|+++||++.|+ ++++++++.+ .+|+++||+|+||||||||+++|+|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 688999999994 6899999988 89999999999999999999999994
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.31 E-value=2e-13 Score=94.42 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=36.1
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+|+++|+++.|+ ..++++ |++.+|.+++|+|+||||||||++.|+|..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999997 467877 899999999999999999999999999954
No 102
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=1.7e-13 Score=101.18 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=59.5
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee-----------------eeeeeeeecccCC-----CCcchH
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI-----------------KASDLISRATTSP-----WPGTTL 79 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~-----------------~~i~~~~q~~~~~-----~~~t~~ 79 (127)
+++..|++++|+||||||||||+|+|+ .. ++.. ..++|++|.+... +.+|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 345679999999999999999999998 53 2222 1268999987553 35577
Q ss_pred HHH--HHH--------Hhh-----hhHHHHHHHHhHh----hhcccCCCCCCcccchhhhhHh
Q psy18211 80 NLL--KEI--------IKI-----QTVCKVKELGKKI----LLSQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 80 ~~l--~~~--------~~~-----~~~~~~~~~~~~~----~~~~~~~~~LSgGekqrv~ia~ 123 (127)
+++ .++ +.. .....+.++.... ...+.....|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666 222 000 0112233322222 1334555669999999999987
No 103
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.29 E-value=2.6e-15 Score=107.57 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.9
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++.+.|+...+++++++++++| ++|+||||+|||||+++|++.
T Consensus 27 ~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 4566666676677899999999999 999999999999999999984
No 104
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.28 E-value=4e-13 Score=93.80 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=32.1
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhcCCceeeeeeeeeeecc
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~~~~q~~ 70 (127)
.++|++++|+||||||||||+++|+|...+.-..+++++++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 578999999999999999999999996432201256666654
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.27 E-value=2e-12 Score=105.70 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=31.9
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++.+++|+||+ |++++|+||||||||||||+++|.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 45678899999 999999999999999999999983
No 106
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.27 E-value=5.4e-14 Score=104.87 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=45.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecC-------CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSA-------GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~g-------e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++.++++..|+...+++++++.+++| +.++|+||||+|||||+++|++.
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 577888998898888999999999887 89999999999999999999983
No 107
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.24 E-value=3.9e-12 Score=99.52 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=50.8
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeee--------------------eeeeeeecccCCCCc
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIK--------------------ASDLISRATTSPWPG 76 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~--------------------~i~~~~q~~~~~~~~ 76 (127)
-+++||++.+|++++|+|+||||||||+++|+|. +++.+. +++|++|.....+..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999982 333321 267888876555556
Q ss_pred chHHHHHHHH
Q psy18211 77 TTLNLLKEII 86 (127)
Q Consensus 77 t~~~~l~~~~ 86 (127)
++.+++.+..
T Consensus 363 tV~e~l~~a~ 372 (503)
T 2yhs_A 363 VIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888887653
No 108
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.23 E-value=2.3e-12 Score=91.10 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=22.9
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh-cCC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL-QSD 56 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~-g~~ 56 (127)
.+..+++||++++|++++|+||||||||||+++|+ |..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999 854
No 109
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.23 E-value=6e-12 Score=98.29 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=37.1
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.+++. ....+|+++||+|++ ++++|+||||||||||+++|+|
T Consensus 9 l~~l~~--~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 9 FRSLTL--INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEEE--EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEE--eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 444443 235689999999999 9999999999999999999999
No 110
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.22 E-value=1.5e-12 Score=94.48 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=39.0
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++++++. ++|+++| +++|++++|+||||||||||+++|+|.
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 4678888753 5899999 899999999999999999999999994
No 111
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.20 E-value=9.1e-12 Score=104.53 Aligned_cols=64 Identities=17% Similarity=0.024 Sum_probs=48.1
Q ss_pred Ceeeece-----eEEEe-CCCCceeeceeEeec-------CCeEEEECCCCCCHHHHHHHHhcCCceeeeeee-eeeecc
Q psy18211 5 PALEGRE-----VILVA-RPEPNIVSADLVLSS-------AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASD-LISRAT 70 (127)
Q Consensus 5 ~~l~~~~-----l~~~~-~~~~~l~~vs~~i~~-------ge~i~liG~nGaGKSTLl~~i~g~~~~~~~~i~-~~~q~~ 70 (127)
++|+++| |++.| ++..+++|++|++++ |++++|+||||||||||||++ |...+ ...+| |+||+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-MAQMGCYVPAEV 826 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-HHTTTCCEESSE
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-HhheeEEeccCc
Confidence 4689999 99999 678899999999987 899999999999999999999 84322 12344 777764
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.20 E-value=6.2e-12 Score=88.98 Aligned_cols=51 Identities=22% Similarity=0.136 Sum_probs=35.7
Q ss_pred CCCCCeeeeceeEEEeCCCCceeece-eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 1 MELWPALEGREVILVARPEPNIVSAD-LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 1 m~~~~~l~~~~l~~~~~~~~~l~~vs-~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|+.+.++++++++..+.+ |+++- =.|++|++++|+||||||||||+++|++
T Consensus 1 ~~~~~~~~~~~i~tg~~~---lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 1 MRIMAYQPVRRVKSGIPG---FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp -------CCCEECCSCTT---TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CccccccccceeecCCHh---HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 444446888888876653 33331 1799999999999999999999999993
No 113
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.17 E-value=1.2e-11 Score=85.28 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.1
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|+++++|++++|+||||||||||+++|+|.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 577889999999999999999999999994
No 114
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.12 E-value=1.1e-11 Score=91.09 Aligned_cols=93 Identities=15% Similarity=-0.019 Sum_probs=57.1
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCCcee---eeeeeeeeecccCCCCcchHHHHHHHH-----------hh-hhHHHH
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCK---IKASDLISRATTSPWPGTTLNLLKEII-----------KI-QTVCKV 94 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~~~~---~~~i~~~~q~~~~~~~~t~~~~l~~~~-----------~~-~~~~~~ 94 (127)
.++.+++|+|++|||||||.+.|.+..... ...+.+++|+.. +++.+.++++.+.. +. .....+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f-~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF-YLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG-BCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc-cCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 567899999999999999999999853321 122345478754 45667888876541 11 112222
Q ss_pred HHHHhHhhh-----------cccCCCCCCcccchhhhhHh
Q psy18211 95 KELGKKILL-----------SQVKGKNMSKTEKKPLQPQY 123 (127)
Q Consensus 95 ~~~~~~~~~-----------~~~~~~~LSgGekqrv~ia~ 123 (127)
.+....... .......+||||+||+.+|+
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~ 147 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQ 147 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCE
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCcccccccccc
Confidence 222221100 11223469999999998873
No 115
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.11 E-value=1.6e-11 Score=102.23 Aligned_cols=35 Identities=14% Similarity=-0.146 Sum_probs=32.5
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+.+++|++|++.+|++++|+||||||||||||+++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 46778999999999999999999999999999993
No 116
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.11 E-value=4.7e-12 Score=101.29 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=45.9
Q ss_pred eeeeceeEEEeCC--CCceeec----------eeEeecCCeEEEECCCCCCHHHHHHHHhcCCce------ee-------
Q psy18211 6 ALEGREVILVARP--EPNIVSA----------DLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC------KI------- 60 (127)
Q Consensus 6 ~l~~~~l~~~~~~--~~~l~~v----------s~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~------~~------- 60 (127)
.++++|+++.|++ +++++.+ +++++. ++|+||||||||||+++|+|...+ .+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5789999999975 3355444 366665 999999999999999999995322 11
Q ss_pred ----------eeeeeeeecccCCCCcchHHHHHHH
Q psy18211 61 ----------KASDLISRATTSPWPGTTLNLLKEI 85 (127)
Q Consensus 61 ----------~~i~~~~q~~~~~~~~t~~~~l~~~ 85 (127)
..++|++|+....+..++.+++...
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 1278888887777777888888764
No 117
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.06 E-value=1.4e-10 Score=78.82 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=30.3
Q ss_pred ce--eeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NI--VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l--~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+ +++++++.+| +++|+||||||||||+++|++
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 55 7889999999 999999999999999999986
No 118
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.02 E-value=2.4e-10 Score=85.33 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=42.8
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC-----Cceeeee--------------------eeeeeecccCCCCcchHHHH
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS-----DLCKIKA--------------------SDLISRATTSPWPGTTLNLL 82 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~-----~~~~~~~--------------------i~~~~q~~~~~~~~t~~~~l 82 (127)
..++|++++|+||||||||||++.|+|. +++.+.+ +.+++|.....+..++.+++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999993 3333221 34677766555566788888
Q ss_pred HHH
Q psy18211 83 KEI 85 (127)
Q Consensus 83 ~~~ 85 (127)
...
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.02 E-value=7.1e-11 Score=86.24 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.++|+++++.+++|++++|+||||||||||++.|++.
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999994
No 120
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.01 E-value=4.8e-11 Score=82.62 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=36.9
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|++..++...+.+..++..++|++++|+|+|||||||+.++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788888888889999999999999999999999999999999984
No 121
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.00 E-value=1.1e-10 Score=97.05 Aligned_cols=37 Identities=19% Similarity=0.099 Sum_probs=34.6
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.+++|++|++++|++++|+||||||||||||++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 4678899999999999999999999999999999976
No 122
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.00 E-value=2.2e-10 Score=94.19 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 17 RPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.+++|++|+ ++|++++|+||||||||||||+|+|
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHH
Confidence 456789999999 9999999999999999999999998
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.97 E-value=2.4e-10 Score=79.82 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=34.2
Q ss_pred eeeceeEEEeCCCCceeece-eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 7 LEGREVILVARPEPNIVSAD-LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs-~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++++.++..+. .|+.+- --|++|++++|+||||||||||+++|+|
T Consensus 2 ~~~~~i~tG~~---~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 2 ATIGRISTGSK---SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp CCCCEECCSCH---HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCccCCCCh---hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45566665443 232221 3799999999999999999999999998
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.97 E-value=2.7e-10 Score=80.52 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=25.2
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
-..++|++++|+||||||||||+++|+|..+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4578999999999999999999999999543
No 125
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.97 E-value=4.7e-10 Score=84.72 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=38.0
Q ss_pred eeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 8 ~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+++|+.. +...++++++++.+| +++|+||||||||||+++|++
T Consensus 5 ~i~~L~l~--~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTL--NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEE--SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEe--CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 56666664 455679999999999 999999999999999999986
No 126
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.95 E-value=3.1e-10 Score=78.71 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.1
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|++++|+||||||||||+++|+|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999999984
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.94 E-value=1.2e-11 Score=91.76 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
++++|+|+||||||||+|.|.|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999999853
No 128
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=4.8e-10 Score=77.49 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
...+++|+||++.++.+++|+|++||||||+.+.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3568999999999999999999999999999999986
No 129
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=2.3e-10 Score=84.76 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=40.1
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcCC-----ceee---------------e-eeeeeeecccCCC----CcchHHH
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSD-----LCKI---------------K-ASDLISRATTSPW----PGTTLNL 81 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~~-----~~~~---------------~-~i~~~~q~~~~~~----~~t~~~~ 81 (127)
+++.+|++++|+||||+|||||+|+|+|.. ++.. . ..++++|.+.... ..++ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999942 2221 0 1578889876543 4567 77
Q ss_pred H
Q psy18211 82 L 82 (127)
Q Consensus 82 l 82 (127)
+
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 7
No 130
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.90 E-value=2.3e-10 Score=86.08 Aligned_cols=38 Identities=21% Similarity=0.089 Sum_probs=33.9
Q ss_pred eeeceeEeec--CCeEEEECCCCCCHHHHHHHHhcCCcee
Q psy18211 22 IVSADLVLSS--AGDVYLVGCTNVGKSTLFNAFLQSDLCK 59 (127)
Q Consensus 22 l~~vs~~i~~--ge~i~liG~nGaGKSTLl~~i~g~~~~~ 59 (127)
.+.|+++|.+ |++++|+||||||||||+++|+|...+.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4679999999 9999999999999999999999965443
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.88 E-value=5e-10 Score=76.54 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|++++|+||||||||||+++|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 678999999999999999999983
No 132
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.88 E-value=9e-10 Score=75.82 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.8
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+++++|++++|+|||||||||++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999999999999965
No 133
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.88 E-value=3.5e-11 Score=85.71 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=34.6
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhc
Confidence 4888888776643 566666 8999999999999999999999
No 134
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.86 E-value=9.6e-10 Score=75.28 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
|++++|+||||||||||+++|+|..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999999843
No 135
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.85 E-value=1.1e-09 Score=75.75 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|++++|+||||||||||+++|+|.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 789999999999999999999994
No 136
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.84 E-value=3.9e-09 Score=76.45 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=35.0
Q ss_pred CCCCCeeeece-eEEEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 1 MELWPALEGRE-VILVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 1 m~~~~~l~~~~-l~~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|.+++.++... ++..+.+ ..++. .+++|++++|+||||||||||++.+++
T Consensus 1 ~~~~~~~~~~~~i~tg~~~ld~~lg----gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 1 MATHKPINILEAFAAAPPPLDYVLP----NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp -CCCCCCCHHHHHHSCCCCCCEEET----TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcceecCHHHHhcCCCCChheeEC----CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 55554455443 3333332 23443 589999999999999999999999997
No 137
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.82 E-value=1.4e-09 Score=82.07 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=35.3
Q ss_pred eeEEEeC--CCCceeecee-------EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 11 EVILVAR--PEPNIVSADL-------VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 11 ~l~~~~~--~~~~l~~vs~-------~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++|- ....++++.+ .+.+|++++|+||||||||||+++|+|.
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4555552 3345666665 6789999999999999999999999983
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.81 E-value=1.1e-09 Score=76.23 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=34.2
Q ss_pred CCCceeecee-EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 18 PEPNIVSADL-VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 18 ~~~~l~~vs~-~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.+.|+++.+ .+++|++++|+||||||||||++.+++.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4557888888 8999999999999999999999999973
No 139
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.81 E-value=2.3e-09 Score=74.10 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC-Cceee
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS-DLCKI 60 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~-~~~~~ 60 (127)
..++.+..++.++|++++|+|+||||||||+++|++. +.+.+
T Consensus 16 ~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 16 ENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred hhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3344455577789999999999999999999999984 44333
No 140
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.80 E-value=2e-09 Score=82.64 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=35.4
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-|+++|+ +.|++. . .+++.+|++++|+||||||||||+++|++
T Consensus 6 ~l~~~~~-~~~~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 6 GLELSNF-KSYRGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEESC-SSCCSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCE-EEECCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3788888 677643 1 35567899999999999999999999987
No 141
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.79 E-value=6.1e-10 Score=87.57 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=33.6
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++++++.+++|+.++|+||||||||||+++|+|.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999999999999999994
No 142
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.79 E-value=2.9e-09 Score=72.56 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=24.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+|++++|+||||||||||+++|++.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999999984
No 143
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.77 E-value=2.4e-09 Score=76.17 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=25.2
Q ss_pred cCCeEEEECCCCCCHHHHHHHHh---cCCcee
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFL---QSDLCK 59 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~---g~~~~~ 59 (127)
++++++|+||||||||||+++|+ |...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 47999999999999999999999 865443
No 144
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.77 E-value=3e-09 Score=81.70 Aligned_cols=35 Identities=37% Similarity=0.415 Sum_probs=33.0
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
--++++|+++.+++++|+|+||||||||+++|++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 34799999999999999999999999999999996
No 145
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.77 E-value=1.3e-09 Score=82.88 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=34.1
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++++++++++|++++|+||||||||||+++|++.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999999999999999999983
No 146
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=2.7e-09 Score=78.54 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=26.6
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|++..|++++|+||||||||||+|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc
Confidence 45678999999999999999999999994
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.74 E-value=2.8e-09 Score=72.28 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=27.7
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|++.+|+.++|+||||+|||||++++++.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 577889999999999999999999999984
No 148
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.73 E-value=2.5e-09 Score=81.01 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.6
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+|++++ +++|++++|+||||||||||+++|+|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 455554 78999999999999999999999998
No 149
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.70 E-value=2.4e-10 Score=85.13 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=44.4
Q ss_pred eEEEeCCCCceeeceeEeecCC------eEEEECCCCCCHHHHHHHHhcCCc--eeeeeeeeeeecc
Q psy18211 12 VILVARPEPNIVSADLVLSSAG------DVYLVGCTNVGKSTLFNAFLQSDL--CKIKASDLISRAT 70 (127)
Q Consensus 12 l~~~~~~~~~l~~vs~~i~~ge------~i~liG~nGaGKSTLl~~i~g~~~--~~~~~i~~~~q~~ 70 (127)
+++.|++++.+++++..+..++ ++||+||||||||||+++|.+... +..+.++++.++.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 4455677788889999988887 999999999999999999998422 1223355565554
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.68 E-value=1.5e-08 Score=74.94 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=28.9
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++..++++++|+|+|||||||+++.|++.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 46677789999999999999999999999984
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.68 E-value=8.9e-09 Score=73.82 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=24.2
Q ss_pred eCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 16 ARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 16 ~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+....++++.+ ++|++++|+|||||||||++++|+
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 33344454443 789999999999999999999999
No 152
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=1.2e-08 Score=71.04 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=25.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
++|++++|+||||||||||+++|++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999854
No 153
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.66 E-value=5.1e-09 Score=73.98 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.5
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.-+++.++|++++|.|+||||||||+++|++.
T Consensus 12 ~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 12 TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34556689999999999999999999999996
No 154
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.66 E-value=4.3e-10 Score=84.14 Aligned_cols=49 Identities=20% Similarity=0.129 Sum_probs=43.8
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.++..+.|+...+++++++.+.++.+++|+|+||+|||||++.|++
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4667777777777788999999999999999999999999999999986
No 155
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.61 E-value=3.8e-08 Score=65.42 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.1
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
++.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555544 89999999999999999986
No 156
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.60 E-value=1.5e-08 Score=77.42 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=44.7
Q ss_pred eeeeceeEEEeCC-CCcee--------------eceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 6 ALEGREVILVARP-EPNIV--------------SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 6 ~l~~~~l~~~~~~-~~~l~--------------~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+.++|+++.|.. +..++ |+.+.+.+|++++|+|++|+|||||++.|++
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 3678999999975 56888 9999999999999999999999999999987
No 157
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.60 E-value=4.6e-09 Score=77.24 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=38.3
Q ss_pred eeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 7 LEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 7 l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+..+++++.|+... ++++|+ +|++++++|+||+||||+++.|++.
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567788887654 788998 9999999999999999999999984
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.57 E-value=2.1e-08 Score=66.74 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.9
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|+.++|+||||+|||||++++++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999999983
No 159
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.57 E-value=3.8e-08 Score=69.09 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=26.0
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|++++|+||||||||||++.+++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999999999998
No 160
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.56 E-value=2.6e-08 Score=67.01 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+|++++|+|+|||||||+.++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999873
No 161
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.54 E-value=4.1e-08 Score=68.42 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=25.0
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|+...+|++++|+||||||||||++.|.+.
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 344568999999999999999999999984
No 162
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.54 E-value=4e-08 Score=65.80 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=23.0
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+.+++|+|+|||||||+.++|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999999999984
No 163
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.47 E-value=7.9e-08 Score=66.46 Aligned_cols=35 Identities=17% Similarity=-0.096 Sum_probs=30.7
Q ss_pred Cceeecee-EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 20 PNIVSADL-VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 20 ~~l~~vs~-~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.|+++.. .+++|++++|+||||||||||++.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35666665 789999999999999999999999998
No 164
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.46 E-value=5.2e-08 Score=73.11 Aligned_cols=37 Identities=11% Similarity=0.023 Sum_probs=32.2
Q ss_pred Cceeec-eeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 20 PNIVSA-DLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 20 ~~l~~v-s~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
..|+++ .+.|++|++++|+||||||||||++.+++..
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555 6899999999999999999999999999853
No 165
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.45 E-value=6.1e-08 Score=73.95 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=25.4
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++.|.+++|+|+||||||||+|+|+|
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 557899999999999999999999999
No 166
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.44 E-value=6.1e-08 Score=72.06 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.7
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++|+++++++++|+|+||+||||++..|++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999999999999999998
No 167
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.44 E-value=7.5e-08 Score=66.57 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.4
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..++|++++|+|+||||||||+++|++.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999983
No 168
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.43 E-value=8.2e-08 Score=66.33 Aligned_cols=31 Identities=26% Similarity=0.127 Sum_probs=27.7
Q ss_pred ceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 25 ADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 25 vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+--+++++.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4456788999999999999999999999996
No 169
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.40 E-value=1.8e-07 Score=69.70 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=24.5
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..+++.+ .+.+|+|||||||||++.+|+.
T Consensus 15 ~~~~i~f~~-~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp EEEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred cCeEEcCCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 455555554 4889999999999999998843
No 170
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=98.39 E-value=2.6e-07 Score=64.21 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=24.1
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
.+.++++.+ .+.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555554 499999999999999999885
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.39 E-value=2.3e-07 Score=63.90 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCCceee
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSDLCKI 60 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~~~~~ 60 (127)
+++|+|+|||||||+.++|++.+.+.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCccc
Confidence 689999999999999999998664443
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.39 E-value=2.3e-08 Score=79.84 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=42.2
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
++++.-||...+++++++.+..|+.+.|+||||+|||||+++|++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4444556777899999999999999999999999999999999996543
No 173
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.38 E-value=6.6e-08 Score=72.48 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=34.0
Q ss_pred eceeEEEeCC---CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 9 GREVILVARP---EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 9 ~~~l~~~~~~---~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++...|+. ..+|++++++++ .++|+|++|||||||++.|+|.
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 5666667753 468999999998 9999999999999999999993
No 174
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.37 E-value=8.2e-08 Score=75.29 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
...++++++++.+| +.+|+|+||||||||+.+|..
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHH
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 44678999999999 999999999999999999943
No 175
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.36 E-value=1.7e-07 Score=63.97 Aligned_cols=22 Identities=41% Similarity=0.689 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+||||||||++.++|.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 176
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.35 E-value=2.1e-07 Score=63.70 Aligned_cols=22 Identities=41% Similarity=0.689 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+||||||||++.++|.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.32 E-value=3e-08 Score=77.80 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=37.2
Q ss_pred eceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++...|....+++++++++++| +.|+||||+|||||+++|++.
T Consensus 43 l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 43 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp HHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHH
Confidence 344444455566889999999999 999999999999999999984
No 178
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.32 E-value=2.8e-07 Score=65.26 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=25.0
Q ss_pred ceeeceeEee---cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 21 NIVSADLVLS---SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 21 ~l~~vs~~i~---~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-|+++++++. +|.+++|.|++||||||+++.|...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4677777776 8999999999999999999999873
No 179
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.32 E-value=2e-08 Score=79.36 Aligned_cols=45 Identities=20% Similarity=0.140 Sum_probs=37.1
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++.+.|....++.++++++ +|+.+.|+||||+|||||+++|++.
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44445555556778888888 8999999999999999999999983
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.32 E-value=4.1e-08 Score=73.99 Aligned_cols=44 Identities=20% Similarity=0.240 Sum_probs=36.3
Q ss_pred eeeeceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 6 ALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 6 ~l~~~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+.+.|++..|+.+.+.++++|+| +|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 477888888888888889999987 99999999999999999874
No 181
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.31 E-value=1.2e-07 Score=75.18 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=26.3
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++|++++|+|+||||||||+++|++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh
Confidence 5789999999999999999999999984
No 182
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.31 E-value=3.4e-07 Score=62.35 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=26.4
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|++...+.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 68899999999999999999999999999864
No 183
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=7.6e-07 Score=67.13 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.8
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-+++|+++.|.||||+|||||+..++..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999873
No 184
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.30 E-value=3.2e-07 Score=61.55 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.7
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++|.+++|+|++|+|||||++.+++.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999999999984
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.29 E-value=3.7e-07 Score=63.54 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.+++|+|++||||||+.++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 186
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=4.2e-08 Score=72.79 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=40.4
Q ss_pred eceeEEEeCCCCceeeceeEeecCCe--EEEECCCCCCHHHHHHHHhcC
Q psy18211 9 GREVILVARPEPNIVSADLVLSSAGD--VYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~ge~--i~liG~nGaGKSTLl~~i~g~ 55 (127)
-++++..||...+++.++..++.|++ +.|.||+|+||||+++++++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34555566777789999999999998 999999999999999999983
No 187
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.27 E-value=4.2e-07 Score=61.35 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.3
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+|++++|+|++||||||+.++|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999873
No 188
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.25 E-value=1.1e-07 Score=65.31 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=31.0
Q ss_pred EEeCC-CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 14 LVARP-EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 14 ~~~~~-~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.|++ ..++++++++.++. .++++|++|+|||||++.+.+
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 34554 35889999987776 689999999999999999987
No 189
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.23 E-value=5.1e-07 Score=62.02 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+++|+|+|||||||+.++|++.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRELG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHHHCC
Confidence 68999999999999999999854
No 190
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.21 E-value=1.3e-06 Score=65.69 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=26.8
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
.+++.++++.+ .+.+|+|+|||||||+|.+|+
T Consensus 15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 34667777666 589999999999999999986
No 191
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.20 E-value=6.7e-07 Score=60.83 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=20.8
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++++++.++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678899987776 889999999999999999987
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.19 E-value=7.1e-07 Score=66.89 Aligned_cols=25 Identities=36% Similarity=0.295 Sum_probs=22.9
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.+++|+|++|||||||++.|+|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3477999999999999999999997
No 193
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.19 E-value=5.1e-07 Score=66.29 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=22.5
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+..+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999995
No 194
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.19 E-value=8.8e-07 Score=61.14 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.5
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
...+|.+++|+||+||||||+.+.|...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999999863
No 195
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.19 E-value=7.6e-07 Score=65.42 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=30.4
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcCCceeee-eeeeeeecc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK-ASDLISRAT 70 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~~~~~~~-~i~~~~q~~ 70 (127)
.+|++++|+|+||+||||+++.|++......+ .+.++..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57999999999999999999999984322112 355665554
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.18 E-value=2.9e-07 Score=70.92 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=35.6
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++.|++.. ++++|+ ++++++++|+||+||||++..|++.
T Consensus 80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45667777654 788888 8999999999999999999999983
No 197
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.18 E-value=1.8e-07 Score=68.88 Aligned_cols=43 Identities=16% Similarity=0.020 Sum_probs=35.3
Q ss_pred ceeEEEeCCCCceee-ceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 10 REVILVARPEPNIVS-ADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~-vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++.+.|++.. ++ ++++.+ +.+++++|+||+||||++..|++.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666676554 56 888876 999999999999999999999973
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.17 E-value=7.3e-07 Score=62.48 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=29.1
Q ss_pred CCCceeec-eeEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 18 PEPNIVSA-DLVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 18 ~~~~l~~v-s~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
+.+.|+++ .--+++|+++.|+||||+|||||+..++
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34456666 6779999999999999999999965554
No 199
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.16 E-value=1.1e-06 Score=58.26 Aligned_cols=22 Identities=50% Similarity=0.806 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
No 200
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.14 E-value=1.3e-06 Score=66.77 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=24.3
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHh
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFL 53 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~ 53 (127)
=-|++|+++.|+||||||||||++.++
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 368999999999999999999999654
No 201
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.13 E-value=3.8e-07 Score=68.76 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=32.2
Q ss_pred CceeeceeEeecCCe--EEEECCCCCCHHHHHHHHhc
Q psy18211 20 PNIVSADLVLSSAGD--VYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~--i~liG~nGaGKSTLl~~i~g 54 (127)
.+++.+++.+++|++ ++|+|++||||||+.++|++
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 367888999999999 99999999999999999988
No 202
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.07 E-value=2.3e-06 Score=57.48 Aligned_cols=22 Identities=50% Similarity=0.806 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 203
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.06 E-value=1.8e-06 Score=58.58 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.9
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+...+|.+++|+|++||||||+.+.|+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4456789999999999999999999987
No 204
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.05 E-value=2.5e-06 Score=57.49 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 205
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.04 E-value=2.1e-06 Score=58.91 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+++|+|++||||||+.+.|+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 206
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.01 E-value=2.6e-06 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.293 Sum_probs=22.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 207
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.01 E-value=3.3e-06 Score=59.54 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=23.8
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+-.++.+++|+|++||||||+.++|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999999999987
No 208
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.99 E-value=2.7e-06 Score=58.93 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=26.2
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.+++|.+++|+|++||||||+.+.|.+.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 55788999999999999999999999873
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=3.2e-06 Score=60.10 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=22.8
Q ss_pred eeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 22 IVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 22 l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++++++.++.| +.|.||+|+|||||++++++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 44445555554 889999999999999999984
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.94 E-value=4.4e-06 Score=63.80 Aligned_cols=28 Identities=39% Similarity=0.570 Sum_probs=25.0
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+..+..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4577889999999999999999999985
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.92 E-value=5.9e-06 Score=58.12 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|+|||||++.|+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999993
No 212
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.91 E-value=1.3e-05 Score=66.44 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=32.1
Q ss_pred eEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 12 VILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 12 l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
+..+=-...-|+||+++|+.+.+++|.|.+|||||||.
T Consensus 16 I~i~gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 16 VQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEEECSTTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred EEEeeccccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 44332345579999999999999999999999999997
No 213
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.91 E-value=6.5e-06 Score=54.54 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++||||||+.+.|+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 214
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.88 E-value=6.6e-06 Score=63.19 Aligned_cols=23 Identities=61% Similarity=0.866 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+++|+|+||+|||||++.|+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 79999999999999999999853
No 215
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.87 E-value=7.1e-06 Score=58.98 Aligned_cols=22 Identities=55% Similarity=0.729 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|||||||++.++|.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999995
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.85 E-value=1.3e-05 Score=55.48 Aligned_cols=27 Identities=37% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcCCce
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQSDLC 58 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~~~~ 58 (127)
+-+++|+|++||||||+.+.|...+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~lg~~ 30 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFADLGIN 30 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCE
Confidence 457999999999999999999875533
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.84 E-value=1.2e-05 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999987
No 218
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.83 E-value=1e-05 Score=55.12 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 219
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.83 E-value=6.3e-06 Score=67.91 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=27.9
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+|.+++++.+.|+||||+|||||+++|++..
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999999999953
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.83 E-value=1.1e-05 Score=53.25 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=18.3
Q ss_pred eEEEECCCCCCHHHHHHHH
Q psy18211 34 DVYLVGCTNVGKSTLFNAF 52 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i 52 (127)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 221
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.82 E-value=9.1e-06 Score=61.29 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.2
Q ss_pred cCCe-EEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGD-VYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~-i~liG~nGaGKSTLl~~i~g~ 55 (127)
.|-. ++|+|+||||||||++.|+|.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 3455 999999999999999999994
No 222
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.82 E-value=2e-05 Score=66.01 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=33.3
Q ss_pred ceeEEEeCCCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 10 REVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 10 ~~l~~~~~~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
+.+..+=-...-|+||+++|+.+.+++|.|.+|||||||.
T Consensus 22 ~~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 22 DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CEEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ceEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 3444443345679999999999999999999999999996
No 223
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.82 E-value=1.5e-05 Score=66.49 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=29.7
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
...-|+||+++|+.+.+++|.|.+|||||||.
T Consensus 10 r~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 10 RVHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred cccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 45579999999999999999999999999996
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.81 E-value=4e-06 Score=59.81 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=25.0
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
....+.++.|+|++||||||+.+.|+..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5677889999999999999999999873
No 225
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.81 E-value=2.1e-05 Score=66.01 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=29.7
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHH
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLF 49 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl 49 (127)
...-|+||+++|+.+++++|.|.+|||||||.
T Consensus 32 r~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 32 REHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp CSSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred cccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 45579999999999999999999999999996
No 226
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.80 E-value=1.4e-05 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|-+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999976
No 227
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=6.5e-06 Score=66.52 Aligned_cols=29 Identities=34% Similarity=0.283 Sum_probs=24.7
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++++.+++|+|++|+|||||++.|++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~ 31 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLY 31 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHH
Confidence 46778999999999999999999999995
No 228
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.80 E-value=1.3e-05 Score=54.47 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+|+|+|++||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999987
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.79 E-value=9.8e-07 Score=68.83 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
...++++++.++.| +.|+||+|+|||||++++++.
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 34566677777777 889999999999999999983
No 230
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.79 E-value=1.3e-05 Score=53.78 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++||||||+.+.|+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 231
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.77 E-value=1.2e-05 Score=54.24 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.2
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 232
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.76 E-value=1.6e-05 Score=57.65 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.++|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999984
No 233
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.76 E-value=1.5e-05 Score=54.85 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
-+.|+||+|||||||++.|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999875
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.75 E-value=1.2e-05 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.4
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+..+.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999984
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.75 E-value=1.5e-05 Score=57.00 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+||||||||||.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999986
No 236
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.74 E-value=1.8e-05 Score=56.38 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.-+++|.||+||||||+.+.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999985
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.73 E-value=1.9e-05 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
++.|.|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=2.3e-05 Score=58.77 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=24.7
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+++.|.||||+|||||+..++.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999888775
No 239
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.70 E-value=2.6e-05 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=22.9
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+|-+|+|+|+.||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999875
No 240
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.70 E-value=2.5e-05 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.503 Sum_probs=21.1
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..+.|+|++||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 241
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.69 E-value=2e-05 Score=51.50 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++++|+.|+|||||++.+++.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999883
No 242
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.68 E-value=2.7e-05 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999984
No 243
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.68 E-value=1.6e-05 Score=58.06 Aligned_cols=30 Identities=20% Similarity=0.311 Sum_probs=26.5
Q ss_pred eeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 26 DLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 26 s~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++.+.++..+.|.||+|+|||||.+++++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 345788999999999999999999999983
No 244
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.68 E-value=2.1e-05 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 245
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.68 E-value=2.4e-05 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=.++++|+.|+|||||++.+++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999984
No 246
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.67 E-value=1.3e-05 Score=61.93 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=33.0
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
...|+++..-+++|+.+.|.|++|+|||||+..+++.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468888888999999999999999999999998873
No 247
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=1.7e-05 Score=58.57 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
..+.|.||||+||||+++++++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999999988
No 248
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.66 E-value=2.8e-05 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.7
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+|-+|+|.|+.||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.66 E-value=2.5e-05 Score=53.14 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=21.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.+|+|+|++||||||+.+.|+..+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~g 32 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSWG 32 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHCC
Confidence 479999999999999999999864
No 250
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.66 E-value=2.8e-05 Score=55.33 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|+|||||++.|.|.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999983
No 251
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.66 E-value=3.1e-05 Score=50.64 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 252
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.65 E-value=9.2e-06 Score=55.82 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 253
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.65 E-value=2.8e-05 Score=50.75 Aligned_cols=21 Identities=29% Similarity=0.564 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 254
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.65 E-value=3.1e-05 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..|-+|+|.|+.||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999975
No 255
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.65 E-value=3.2e-05 Score=50.67 Aligned_cols=21 Identities=52% Similarity=0.616 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++|+.|+|||||++.+++
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999986
No 256
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.64 E-value=1.1e-05 Score=54.78 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=24.1
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+..+-+|+|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3445677999999999999999999986
No 257
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.64 E-value=3.3e-05 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.4
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++-+++|+|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999975
No 258
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.63 E-value=3.1e-05 Score=50.30 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 259
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.63 E-value=3.3e-05 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.612 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 260
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.63 E-value=2.6e-05 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.3
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+..+.|+||+||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999975
No 261
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.63 E-value=3e-05 Score=52.13 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+|.|.|++||||||+.+.|+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 262
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=3.4e-05 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 263
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.62 E-value=3.5e-05 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|-+|+|+|+.||||||+.+.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999985
No 264
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.61 E-value=3.4e-05 Score=60.66 Aligned_cols=32 Identities=22% Similarity=0.207 Sum_probs=29.2
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.+++++..+.++.|.|.+||||||+++.|..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999999999999875
No 265
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.61 E-value=3.5e-05 Score=50.03 Aligned_cols=22 Identities=55% Similarity=0.848 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 266
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.61 E-value=3e-05 Score=50.24 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 267
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.61 E-value=3.5e-05 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999883
No 268
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.61 E-value=3.5e-05 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 269
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.60 E-value=3.6e-05 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 270
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.60 E-value=3.2e-05 Score=57.79 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=22.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..-.++++|+||+|||||++.+++.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999984
No 271
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.60 E-value=2.3e-05 Score=52.13 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999986
No 272
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.60 E-value=3.7e-05 Score=50.13 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 273
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.60 E-value=3.9e-05 Score=51.88 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+|+|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 274
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.59 E-value=3.1e-05 Score=58.42 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=22.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..+.|+|++|||||||++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 677899999999999999999987
No 275
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.59 E-value=3.9e-05 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.573 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 276
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.59 E-value=3.9e-05 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 277
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.59 E-value=3.8e-05 Score=51.47 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999984
No 278
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.58 E-value=3.9e-05 Score=57.95 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+-.++|+|.+|+|||||++.|++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45789999999999999999998
No 279
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.58 E-value=3.4e-05 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=.++|+|+.|+|||||++.+.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999984
No 280
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.58 E-value=3.9e-05 Score=56.26 Aligned_cols=22 Identities=55% Similarity=0.637 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.+.|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 281
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.58 E-value=4e-05 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 282
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.58 E-value=3.5e-05 Score=51.58 Aligned_cols=22 Identities=50% Similarity=0.797 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999984
No 283
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.58 E-value=3.8e-05 Score=52.37 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|.|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 284
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.58 E-value=3.2e-05 Score=51.81 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=17.2
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.+|.|.|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 285
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.58 E-value=3.1e-05 Score=54.45 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.1
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..|+.+.++||+||||||++.++..
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 356799999999999999998887754
No 286
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.58 E-value=3.6e-05 Score=50.33 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 287
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.57 E-value=5.7e-05 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.5
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.-.++++|+.|+|||||++.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445799999999999999999987
No 288
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.57 E-value=3.8e-05 Score=55.05 Aligned_cols=22 Identities=45% Similarity=0.754 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|||||||++.++|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999995
No 289
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.57 E-value=3.8e-05 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999983
No 290
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.57 E-value=3.2e-05 Score=58.44 Aligned_cols=21 Identities=62% Similarity=0.819 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|++|+|||||++.|++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~ 23 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTR 23 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 479999999999999999998
No 291
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.56 E-value=4.4e-05 Score=49.82 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 292
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.56 E-value=4.4e-05 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+++.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999984
No 293
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.56 E-value=4.3e-05 Score=51.43 Aligned_cols=21 Identities=38% Similarity=0.700 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 294
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.56 E-value=4.6e-05 Score=52.54 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999964
No 295
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.56 E-value=4.5e-05 Score=50.81 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 296
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.56 E-value=3.9e-05 Score=50.63 Aligned_cols=22 Identities=45% Similarity=0.604 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999873
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.55 E-value=5.7e-05 Score=52.37 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.7
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++-+|+|+|+.||||||+.+.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999976
No 298
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.55 E-value=5.4e-05 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 299
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.54 E-value=4.7e-05 Score=50.77 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 300
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.54 E-value=4.3e-05 Score=52.03 Aligned_cols=21 Identities=52% Similarity=0.616 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++|+|||||++.+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999976
No 301
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.54 E-value=5e-05 Score=49.77 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 302
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.52 E-value=5.5e-05 Score=52.21 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999965
No 303
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.52 E-value=5.3e-05 Score=51.37 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+|++|||||||+..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999887
No 304
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.52 E-value=5.3e-05 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999986
No 305
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.51 E-value=5.5e-05 Score=55.51 Aligned_cols=23 Identities=57% Similarity=0.765 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+++|+|+.|+|||||++.+.|.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999994
No 306
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.51 E-value=5.9e-05 Score=54.04 Aligned_cols=22 Identities=55% Similarity=0.945 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|+|||||++.++|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
No 307
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.51 E-value=5.2e-05 Score=54.73 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|||||||++.++|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999995
No 308
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.51 E-value=5.7e-05 Score=50.09 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
.+++|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 309
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.51 E-value=5.9e-05 Score=52.58 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=21.2
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++-+++|+|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999985
No 310
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.51 E-value=6.1e-05 Score=50.69 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 311
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.51 E-value=5.7e-05 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 312
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.50 E-value=5.6e-05 Score=51.34 Aligned_cols=21 Identities=52% Similarity=0.643 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++|+|||||++.+++
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 313
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.50 E-value=5.8e-05 Score=50.08 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999999987
No 314
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.50 E-value=6.9e-06 Score=59.54 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=29.5
Q ss_pred CCCCceeeceeEeecC-----------CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 17 RPEPNIVSADLVLSSA-----------GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~g-----------e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|...+++.+...+..+ ..+.|.||+|+||||+.++|+..
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 4444555555555554 57999999999999999999873
No 315
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.50 E-value=5.9e-05 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.50 E-value=6.7e-05 Score=49.56 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+|+|.|+.||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 317
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.49 E-value=6e-05 Score=50.78 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++|+|||||++.+++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999976665
No 318
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.49 E-value=6e-05 Score=50.52 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+++
T Consensus 23 ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 319
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.49 E-value=5.4e-05 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998873
No 320
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.49 E-value=5.4e-05 Score=49.88 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 321
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.49 E-value=5.7e-05 Score=53.59 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
No 322
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.48 E-value=7.7e-05 Score=49.47 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
++++|+|+.||||||+-+.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 323
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.48 E-value=7.1e-05 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.8
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.=.++++|+.|+|||||++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999999873
No 324
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.48 E-value=6.7e-05 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 325
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.47 E-value=6.8e-05 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 326
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.47 E-value=6.5e-05 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
.+++|+|+.||||||+.+.|+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 327
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.47 E-value=8.8e-05 Score=50.66 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+-+|+|+|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 328
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.46 E-value=6.8e-05 Score=50.32 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 329
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.46 E-value=7e-05 Score=50.29 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+++
T Consensus 24 ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 330
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.46 E-value=6.2e-05 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 331
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.46 E-value=7.2e-05 Score=49.74 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999987
No 332
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.45 E-value=6.3e-05 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 333
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.45 E-value=7e-05 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+++.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999884
No 334
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.45 E-value=7.4e-05 Score=50.55 Aligned_cols=21 Identities=43% Similarity=0.605 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.44 E-value=8.1e-05 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+|+|+|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 336
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=6.9e-05 Score=50.57 Aligned_cols=22 Identities=45% Similarity=0.680 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.44 E-value=7.3e-05 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+-+|.|+|++||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999985
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.44 E-value=8.4e-05 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.4
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.-+|+|+|+.||||||+.+.|+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 339
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=6.9e-05 Score=50.40 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 689999999999999999987
No 340
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.44 E-value=8.7e-05 Score=50.29 Aligned_cols=22 Identities=18% Similarity=0.584 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999883
No 341
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.44 E-value=8.2e-05 Score=50.26 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999973
No 342
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.44 E-value=6.5e-05 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=.++|+|+.|+|||||++.+.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 343
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.44 E-value=9.9e-05 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.2
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..+.|.||+|+|||||++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999999986
No 344
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.43 E-value=7.9e-05 Score=49.43 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 345
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.43 E-value=8.7e-05 Score=49.91 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+++.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 346
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=6.9e-05 Score=55.29 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=23.1
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999873
No 347
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.42 E-value=7.5e-05 Score=54.30 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.|+|.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred eEEEEcCCCCCHHHHHHHHHCC
Confidence 6999999999999999999994
No 348
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.42 E-value=7.2e-05 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=.++|+|+.|+|||||++.+.+
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999988
No 349
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.42 E-value=8.6e-05 Score=49.82 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 350
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.41 E-value=9.3e-05 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+++.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 351
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.41 E-value=7.7e-05 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 352
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.41 E-value=8.8e-05 Score=49.92 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 353
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.41 E-value=3.7e-05 Score=56.49 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCCceeeceeEeecC--CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 17 RPEPNIVSADLVLSSA--GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 17 ~~~~~l~~vs~~i~~g--e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
|...+++.+.-.+..| ..+.|.||+|+||||+++.++..
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4455666676666666 45999999999999999999874
No 354
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=8.7e-05 Score=55.31 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=25.2
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+++.|.||+|+|||||+..++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999998887
No 355
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.41 E-value=9.2e-05 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.+|.|+|++||||||+.+.|+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355799999999999999999975
No 356
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=7.7e-05 Score=50.21 Aligned_cols=21 Identities=19% Similarity=0.583 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.|+|||||++.+.+
T Consensus 25 ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999999987
No 357
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.40 E-value=9.1e-05 Score=49.91 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999873
No 358
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.40 E-value=9e-05 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.40 E-value=9.9e-05 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 360
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=9.3e-05 Score=49.57 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=.++++|+.|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999996
No 361
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.39 E-value=9e-05 Score=54.93 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.1
Q ss_pred cCC--eEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAG--DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge--~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+. .+.|.||+|+|||||++.+++.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 346 8999999999999999999873
No 362
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=9.5e-05 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999873
No 363
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.39 E-value=9.6e-05 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 364
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.39 E-value=4e-05 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-+++|+|+.|+|||||++.+++.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 365
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.38 E-value=0.00011 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 366
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=8.5e-05 Score=50.95 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999999876
No 367
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.0001 Score=49.81 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=.++|+|+.|+|||||++.+.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999873
No 368
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.0001 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.=.++|+|+.|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999999873
No 369
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.38 E-value=0.00011 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.6
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++..+.|.||+|+|||||.+.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 5678999999999999999999983
No 370
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.38 E-value=0.0001 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=.++|+|+.|+|||||++.+.+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.37 E-value=0.00011 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.3
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+|+|.|+.||||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999977
No 372
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.37 E-value=8.8e-05 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.9
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.++|.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 7999999999999999999984
No 373
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.37 E-value=0.00011 Score=50.50 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.-+++|+|+.||||||+.+.+...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999865
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.37 E-value=7.2e-05 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++++|+.|+|||||++.+++
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 375
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.36 E-value=9.3e-05 Score=50.33 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 376
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.36 E-value=8.7e-05 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999974
No 377
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.35 E-value=0.00011 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999883
No 378
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00013 Score=50.78 Aligned_cols=21 Identities=52% Similarity=0.643 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|++|+|||||++.+++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999987
No 379
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.=.++++|+.|+|||||++.+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999987
No 380
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.34 E-value=0.00014 Score=53.60 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=25.1
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+++.|.||+|+|||||...++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 589999999999999999999988876
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.34 E-value=0.0001 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+|+.|+|||||++.+++
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999999886
No 382
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.34 E-value=0.00011 Score=50.26 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999999987
No 383
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=50.36 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 384
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.33 E-value=0.0001 Score=56.88 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999983
No 385
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.33 E-value=0.0001 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+.+.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999883
No 386
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.33 E-value=8.8e-05 Score=57.21 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=22.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++.+++++|+||+||||++..|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999986
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.33 E-value=0.00011 Score=50.67 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.2
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999975
No 388
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.33 E-value=0.00013 Score=49.17 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+|+.|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 689999999999999988876
No 389
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.32 E-value=0.00015 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=.++++|+.|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999986
No 390
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.31 E-value=0.00013 Score=49.88 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+|+.|+|||||++.+++
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999987
No 391
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.31 E-value=0.00017 Score=49.17 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
..+.|.||+|+|||||++.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999987
No 392
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.31 E-value=0.00013 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.=.++++|+.|+|||||++.+.+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999863
No 393
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.31 E-value=8.1e-05 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=9.3
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 394
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.31 E-value=2.8e-05 Score=53.35 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.9
Q ss_pred ceeeceeEeecCC---eEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAG---DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge---~i~liG~nGaGKSTLl~~i~g 54 (127)
.++.+.-.+..+. .+.|.||+|+|||||++.++.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444455555 789999999999999999976
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.30 E-value=0.00012 Score=52.97 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=21.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
-+|+|+|+.||||||+.+.|...+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~lg 99 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNLG 99 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC
Confidence 379999999999999999998543
No 396
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.30 E-value=0.00013 Score=52.06 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.29 E-value=0.00026 Score=52.41 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCCc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDL 57 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~~ 57 (127)
...++...+.+ .|.-+.|+|++|+||||+...+...+.
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 35677777777 788899999999999999999987553
No 398
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.29 E-value=0.00013 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999987
No 399
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.29 E-value=0.00015 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.9
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++-+++|+|+.||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3556899999999999999999974
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.28 E-value=0.00016 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.2
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++-+|.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999975
No 401
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.28 E-value=0.00015 Score=56.48 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred ceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 21 NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 21 ~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+++.+ +.+-+|++++|+|++|+|||||++.|..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~ 173 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIH 173 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHh
Confidence 44444 6778999999999999999999998876
No 402
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.28 E-value=0.00014 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-.++++|.+|+|||||++.+.|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~ 122 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK 122 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred hheEEeCCCCCCHHHHHHHHhcc
Confidence 48999999999999999999984
No 403
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.28 E-value=0.00014 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|+.|+|||||++.+.+.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
No 404
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.27 E-value=6.8e-05 Score=51.46 Aligned_cols=21 Identities=38% Similarity=0.624 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.26 E-value=0.00032 Score=48.92 Aligned_cols=38 Identities=18% Similarity=0.133 Sum_probs=29.5
Q ss_pred CCCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 18 PEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 18 ~~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
....++..-+. ..|..+.|+||+|+|||||...|+..+
T Consensus 21 ~~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 34456655555 467889999999999999999998754
No 406
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.26 E-value=7.6e-05 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=17.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.-+|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999976
No 407
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.26 E-value=0.00015 Score=48.73 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999987
No 408
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.25 E-value=0.00022 Score=47.19 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
....+.|.||.|+|||||++.++.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999976
No 409
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.25 E-value=0.00018 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.1
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 410
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.23 E-value=6.2e-05 Score=62.02 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=27.6
Q ss_pred ceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 25 ADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 25 vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.++.+.++..+.|.||||+|||||.++|++
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHH
Confidence 366788999999999999999999999998
No 411
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.22 E-value=0.00013 Score=48.91 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999976
No 412
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.21 E-value=0.00018 Score=49.05 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 589999999999999999987
No 413
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.21 E-value=0.00018 Score=54.78 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.0
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|++++|||||++.+++.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~ 23 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLV 23 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00026 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=21.5
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+-.|.|+|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 415
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.20 E-value=0.00018 Score=50.89 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=20.2
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..+|-+|.|.|+.||||||+.+.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999976
No 416
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.20 E-value=0.00019 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+..+.|.||+|+|||||++.++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999999987
No 417
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00021 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 589999999999999999987
No 418
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.19 E-value=0.00023 Score=50.95 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.8
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.++.-+.|.||+|+|||||.+.++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456777999999999999999999874
No 419
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.19 E-value=0.00019 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=+++++|+.|+|||||++.+++
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3689999999999999998886
No 420
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.18 E-value=0.00019 Score=49.50 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+|+.|+|||||++-++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999886
No 421
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.18 E-value=0.00022 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
=+++|+|+.|+|||||++.+.+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3689999999999999999987
No 422
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.18 E-value=7.2e-05 Score=50.83 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=16.9
Q ss_pred CCCCCcccchhhhhHhhhh
Q psy18211 108 GKNMSKTEKKPLQPQYSLI 126 (127)
Q Consensus 108 ~~~LSgGekqrv~ia~aL~ 126 (127)
...||||||||++||++|+
T Consensus 62 ~~~LSgGekqr~ala~~la 80 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFA 80 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 4569999999999999985
No 423
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.18 E-value=0.00025 Score=54.17 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.9
Q ss_pred eecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 29 LSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 29 i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-....++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568999999999999999999976
No 424
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.16 E-value=0.00028 Score=51.89 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=30.6
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..-|+++.--+++|+.+.|.|++|+|||||...++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345677776799999999999999999999887764
No 425
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.16 E-value=8.5e-05 Score=50.23 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=4.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.15 E-value=0.00026 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.135 Sum_probs=22.1
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+|-+|+|.|+.||||||+.+.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999999865
No 427
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.15 E-value=0.00021 Score=54.74 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++|+|||||++.++|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999983
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.0003 Score=48.94 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
++.|+||+||||+|.-+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 429
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.12 E-value=0.00025 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++|+|+.|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.11 E-value=0.00032 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=22.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+|-+|+|.|++||||||+.+.|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999876
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.11 E-value=0.00029 Score=52.72 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
+++|+||+|||||||.+.|+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 799999999999999999886
No 432
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.10 E-value=0.00023 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=23.4
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-.+....++.|+||+||||+|.-+.|+-
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445666889999999999999999986
No 433
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.10 E-value=0.00045 Score=48.05 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCceeecee-EeecCCeEEEECCCCCCHHHHHHHH
Q psy18211 18 PEPNIVSADL-VLSSAGDVYLVGCTNVGKSTLFNAF 52 (127)
Q Consensus 18 ~~~~l~~vs~-~i~~ge~i~liG~nGaGKSTLl~~i 52 (127)
+-+-|+++-- =+++|+++.|.|++|+|||||.--+
T Consensus 15 Gi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 15 GIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3444555432 4899999999999999999997544
No 434
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00032 Score=51.45 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=24.6
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+++.|.|++|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999999988774
No 435
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.09 E-value=9.7e-05 Score=48.94 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=14.6
Q ss_pred ccCCCCCCcccchhhhhH
Q psy18211 105 QVKGKNMSKTEKKPLQPQ 122 (127)
Q Consensus 105 ~~~~~~LSgGekqrv~ia 122 (127)
++.+.+||||||||++||
T Consensus 52 ~~~~~~LSgGe~qrv~lA 69 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLA 69 (148)
T ss_dssp EECGGGSCHHHHHHHHHH
T ss_pred cCChhHCCHHHHHHHHHH
Confidence 345567999999999887
No 436
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0002 Score=54.23 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=24.3
Q ss_pred eeEe-ecCC-eEEEECCCCCCHHHHHHHHhcC
Q psy18211 26 DLVL-SSAG-DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 26 s~~i-~~ge-~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.|.| +.|. .|||+|.+.+||||||+.|++.
T Consensus 64 ~f~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~ 95 (376)
T 4a9a_A 64 GFDVARTGVASVGFVGFPSVGKSTLLSKLTGT 95 (376)
T ss_dssp TTTBCBCSSEEEEEECCCCHHHHHHHHHHHSB
T ss_pred CceEeecCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 4444 3344 6999999999999999999994
No 437
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.08 E-value=0.00026 Score=46.78 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.2
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
....+.|.||.|+|||||++.++.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999976
No 438
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.08 E-value=0.00036 Score=48.03 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+-+++|+|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 439
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.07 E-value=0.00031 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++++|.+|+|||||++.|.|.
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEecCCCchHHHHHHHhcC
Confidence 6999999999999999999984
No 440
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.05 E-value=0.0004 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=22.0
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+|-+|.|-|+.||||||+.+.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999876
No 441
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=8.4e-05 Score=52.84 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHhc
Q psy18211 35 VYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 35 i~liG~nGaGKSTLl~~i~g 54 (127)
+.|.||+|+|||||.+.++.
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 77999999999999999987
No 442
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.04 E-value=0.00045 Score=48.61 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
....-+.|.||+|+||||+.+.++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455688999999999999999987
No 443
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.02 E-value=0.00031 Score=54.02 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
...+.|.||+|+|||||+++|++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.02 E-value=0.0004 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+||+|||||||.+.|+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999873
No 445
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.01 E-value=0.00053 Score=51.22 Aligned_cols=33 Identities=39% Similarity=0.399 Sum_probs=26.3
Q ss_pred eeceeEeecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 23 VSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 23 ~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+.++++---.++|+|.++||||||++.+++.
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345555555557999999999999999999873
No 446
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.01 E-value=0.00024 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=23.4
Q ss_pred eEeecC--CeEEEECCCCCCHHHHHHHHhc
Q psy18211 27 LVLSSA--GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 27 ~~i~~g--e~i~liG~nGaGKSTLl~~i~g 54 (127)
|.+.++ .+++++|++|+||||+...|++
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444444 5899999999999999999988
No 447
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.01 E-value=0.00038 Score=48.88 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+-+|+|.|+.||||||+.+.|+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999863
No 448
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.00 E-value=0.00027 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.|.|.
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTS
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999994
No 449
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.99 E-value=0.00046 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-+++|+|+.|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998774
No 450
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.99 E-value=0.00026 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++-+|+|.|+.||||||+.+.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 56779999999999999999999874
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.98 E-value=0.00041 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.-+++|+|+.|+|||||++.|+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 452
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.98 E-value=0.0005 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=23.0
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+|-+|.+-|+.||||||+.+.|.-
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999987
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.96 E-value=0.0005 Score=48.49 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.7
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+|-+|.|.|+.||||||+.+.|..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999976
No 454
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.95 E-value=0.00066 Score=51.00 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=24.4
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999999887765
No 455
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.95 E-value=0.00027 Score=52.80 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=30.8
Q ss_pred CCceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 19 EPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 19 ~~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..-|+.+.--+.+|+.+.|.|++|+|||||+.-++.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~ 68 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL 68 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345666666799999999999999999999988876
No 456
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.95 E-value=0.00071 Score=50.61 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.6
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.+.+++|+||.|||||||...|+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34589999999999999999999743
No 457
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=96.94 E-value=0.00024 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.4
Q ss_pred eEEEECCCCCCHHHHHHH-Hhc
Q psy18211 34 DVYLVGCTNVGKSTLFNA-FLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~-i~g 54 (127)
+++|+|+.|+|||||++. +.+
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 589999999999999998 444
No 458
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.93 E-value=0.00041 Score=53.83 Aligned_cols=24 Identities=50% Similarity=0.654 Sum_probs=21.6
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.|=.++|+|+.|+|||||++.+++
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~ 246 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQ 246 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 455699999999999999999988
No 459
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.93 E-value=8.8e-05 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.++|+|+.|+|||||++.+.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 460
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.93 E-value=0.0005 Score=51.74 Aligned_cols=25 Identities=60% Similarity=1.100 Sum_probs=22.6
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+..++++|++|+|||||+|.|.+.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4668999999999999999999984
No 461
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.91 E-value=0.00056 Score=52.40 Aligned_cols=22 Identities=55% Similarity=0.842 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|++++|||||++.+++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~ 24 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKK 24 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 462
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.95 E-value=0.00014 Score=49.35 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.=.++++|+.|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34689999999999999988876
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.89 E-value=0.00062 Score=50.58 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.5
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-+++|+||+|||||||...|+-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 47899999999999999999863
No 464
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.88 E-value=0.00069 Score=44.02 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.6
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+.-+.|.||+|+|||++.+.|...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567899999999999999999874
No 465
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.86 E-value=0.00057 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.8
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999863
No 466
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.84 E-value=0.00068 Score=51.91 Aligned_cols=23 Identities=48% Similarity=0.733 Sum_probs=21.3
Q ss_pred eEEEECCCCCCHHHHHHHHhcCC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
.++|+|++|+|||||++.++|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 467
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.00069 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.+.|.||.|+|||||++.++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 468
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.84 E-value=0.00054 Score=54.77 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
-+++|+|+.++|||||++.|.|.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHhHcCC
Confidence 46899999999999999999994
No 469
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.83 E-value=0.00055 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.4
Q ss_pred CeEEEECCCCCCHHHHHHHHhcC
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g~ 55 (127)
=+++|+|+.|+|||||++.|.|.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~ 88 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQ 88 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.83 E-value=0.00067 Score=52.08 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=29.4
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.-|+.+.--+++|+.+.|.|++|+|||||..-++.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 34566665689999999999999999999887765
No 471
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.83 E-value=0.00082 Score=45.72 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=19.1
Q ss_pred cCCeEEEECCCCCCHHHHH-HHH
Q psy18211 31 SAGDVYLVGCTNVGKSTLF-NAF 52 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl-~~i 52 (127)
+|.++.+.||.|+||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999997 554
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.83 E-value=0.00074 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
..++|+||+|||||||...|+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4789999999999999999986
No 473
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.82 E-value=0.00073 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhc
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g 54 (127)
.++++|+.|+|||||++.|++
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999998
No 474
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.82 E-value=0.00056 Score=51.47 Aligned_cols=25 Identities=56% Similarity=1.006 Sum_probs=22.8
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++..++++|++|+|||||+|.|.+.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5678999999999999999999883
No 475
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.80 E-value=0.00049 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.7
Q ss_pred EeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 28 VLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 28 ~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..|+.+.++|||||||||++.++..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999988865
No 476
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.80 E-value=0.00057 Score=53.22 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=20.6
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.|=.++|+|+.|+|||||++.+++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
No 477
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.79 E-value=0.00084 Score=48.42 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.7
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++..+.|.||+|+||||+.+.++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999988776
No 478
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.79 E-value=0.00076 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++=.++|+|+.|+|||||++.|+|.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999984
No 479
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.75 E-value=0.00086 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|..|+|||||++.+++.
T Consensus 43 kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 43 KVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEESSSCSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 480
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.75 E-value=0.00096 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-..||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 481
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.70 E-value=0.0011 Score=46.02 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|.+|+|=|+.||||||+.+.|.-
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYH 24 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999999998875
No 482
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.70 E-value=0.00098 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.5
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+..++.++|++|+||||+...|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467999999999999999988885
No 483
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.69 E-value=0.0012 Score=48.34 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+.-+.|.||+|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999875
No 484
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.69 E-value=0.00022 Score=55.10 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=27.2
Q ss_pred eeceeEeecCCe--EEEECCCCCCHHHHHHHHhcC
Q psy18211 23 VSADLVLSSAGD--VYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 23 ~~vs~~i~~ge~--i~liG~nGaGKSTLl~~i~g~ 55 (127)
+.+.-.+..|.. +.|.||+|+|||||.++|+..
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 455566667775 899999999999999999973
No 485
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.00083 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHhcC
Q psy18211 34 DVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 34 ~i~liG~nGaGKSTLl~~i~g~ 55 (127)
+++|+|+.|+|||||++.+.+.
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSS
T ss_pred eEEEECCCCccHHHHHHHHhCC
Confidence 6999999999999999999874
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.66 E-value=0.0012 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
..-+.|.||+|+||||+.+.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 487
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.66 E-value=0.0011 Score=47.26 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.9
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+...+.|.||+|+|||||.+.++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 344688999999999999999987
No 488
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=46.92 Aligned_cols=21 Identities=38% Similarity=0.744 Sum_probs=19.9
Q ss_pred eEEEECCC---------CCCHHHHHHHHhc
Q psy18211 34 DVYLVGCT---------NVGKSTLFNAFLQ 54 (127)
Q Consensus 34 ~i~liG~n---------GaGKSTLl~~i~g 54 (127)
+++|+|.. |+|||||++.+++
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 68999999 9999999999997
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.64 E-value=0.0013 Score=49.10 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.9
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
--+.+|..+.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4678888999999999999999998875
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.64 E-value=0.0013 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.0
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
++..+.|.||+|+||||+.+.|+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999873
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.0013 Score=48.34 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=22.2
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+..-+.|.||.|+|||+|.+.++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 4556789999999999999999987
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.61 E-value=0.0027 Score=43.34 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.2
Q ss_pred eEeecCCeEEEECCCCCCHHHHHHHHhcCC
Q psy18211 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56 (127)
Q Consensus 27 ~~i~~ge~i~liG~nGaGKSTLl~~i~g~~ 56 (127)
+---.|.-+.|.|++|+|||||...+...|
T Consensus 11 ~v~v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 11 FLVIDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 333567789999999999999998887654
No 493
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.60 E-value=0.00016 Score=53.01 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=27.9
Q ss_pred CceeeceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 20 PNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 20 ~~l~~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
.+++.+...+..|..+.|.||+|+|||+|.+.++.
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 34444555556678999999999999999999986
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.59 E-value=0.0012 Score=50.60 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred CeEEEECCCCCCHHHHHHHHhc
Q psy18211 33 GDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 33 e~i~liG~nGaGKSTLl~~i~g 54 (127)
-+++|.||+|+|||||.+.|+-
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 3689999999999999998875
No 495
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.58 E-value=0.0014 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.7
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
++..+.|.||+|+|||||.+.++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.57 E-value=0.0015 Score=47.49 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
--.+.|.||+|+|||+|.+.++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577789999999999999987
No 497
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=96.54 E-value=0.0011 Score=50.83 Aligned_cols=31 Identities=13% Similarity=0.166 Sum_probs=27.9
Q ss_pred eceeEeecCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 24 SADLVLSSAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 24 ~vs~~i~~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
|.=+.+-+|++.+|+|+.|+|||||+..|+.
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 5567789999999999999999999988876
No 498
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0016 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHhc
Q psy18211 32 AGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 32 ge~i~liG~nGaGKSTLl~~i~g 54 (127)
...+.|.||.|+|||||++.++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 499
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.52 E-value=0.0018 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.4
Q ss_pred cCCeEEEECCCCCCHHHHHHHHhc
Q psy18211 31 SAGDVYLVGCTNVGKSTLFNAFLQ 54 (127)
Q Consensus 31 ~ge~i~liG~nGaGKSTLl~~i~g 54 (127)
+..-+.|.||+|+|||+|.+.++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445689999999999999999987
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.50 E-value=0.0019 Score=48.16 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=22.5
Q ss_pred ecCCeEEEECCCCCCHHHHHHHHhcC
Q psy18211 30 SSAGDVYLVGCTNVGKSTLFNAFLQS 55 (127)
Q Consensus 30 ~~ge~i~liG~nGaGKSTLl~~i~g~ 55 (127)
.+..-+.|.||+|+|||||.+.++..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999873
Done!