RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18211
(127 letters)
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 63.0 bits (153), Expect = 6e-13
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 29 LSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
GDVY+VGCTNVGKST N ++ K TTS +PGTTL++++
Sbjct: 159 YREGGDVYVVGCTNVGKSTFINRIIEEATGKGN------VITTSYFPGTTLDMIE 207
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 61.9 bits (150), Expect = 1e-12
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLK 83
DVY+VGCTNVGKST N ++ + + TTS +PGTTL+L+
Sbjct: 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETEN-----VITTSHFPGTTLDLID 206
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 45.6 bits (109), Expect = 7e-07
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+VG NVGKSTL N L D RA + PGTT +++ E I I+
Sbjct: 248 IVGKPNVGKSTLLNRLLNED-----------RAIVTDIPGTTRDVISEEIVIR 289
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 45.6 bits (109), Expect = 8e-07
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+VG NVGKS+L NA+ QSD RA + PGTT ++++ + +
Sbjct: 229 IVGRPNVGKSSLLNAWSQSD-----------RAIVTDLPGTTRDVVESQLVVG 270
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 45.2 bits (108), Expect = 9e-07
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+ G N GKSTL N L + RA S PGTT + ++E
Sbjct: 238 IAGKPNAGKSTLLNTLLGQE-----------RAIVSHMPGTTRDYIEECFIHD 279
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 43.3 bits (103), Expect = 3e-06
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
V + G N GKS+L NA + A + GTT ++L+E I I
Sbjct: 7 VVIAGRPNAGKSSLLNALAGRE-----------AAIVTDIAGTTRDVLREHIHID 50
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 42.3 bits (100), Expect = 8e-06
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQ 89
+ + G NVGKS+ NA + ++ + S + GTT + + + +++
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNV-----------SIVSDYAGTTTDPVYKSMELH 80
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 40.2 bits (95), Expect = 5e-05
Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 11/42 (26%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
+VG NVGKSTLFNA L + RA SP PGTT
Sbjct: 185 IVGRPNVGKSTLFNAILNKE-----------RALVSPIPGTT 215
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 35 VYLVGCTNVGKSTLFNAFLQS 55
V +VG NVGKSTLFN ++
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKK 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 40.2 bits (95), Expect = 6e-05
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
L+G NVGKS+L NA L + R S GTT
Sbjct: 180 LIGRPNVGKSSLVNAMLGEE-----------RVIVSNVAGTT 210
Score = 35.9 bits (84), Expect = 0.002
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 35 VYLVGCTNVGKSTLFNAFLQS 55
V +VG NVGKST+FN
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGE 26
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 9e-05
Identities = 23/128 (17%), Positives = 39/128 (30%), Gaps = 26/128 (20%)
Query: 15 VARPEP--NIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTS 72
V+R +P + A L L A +V + G GK+ + S + K I
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----- 185
Query: 73 PWPGTTLNLLKE------IIKIQTVCKVKELGKKILLSQVKG----KNMSKTEKKPL--Q 120
W LNL + +Q + + + + E + L
Sbjct: 186 -W----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 121 PQY--SLI 126
Y L+
Sbjct: 241 KPYENCLL 248
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 38.4 bits (90), Expect = 2e-04
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ +VG TN GK++LFN+
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLT 203
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 38.0 bits (89), Expect = 3e-04
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 37 LVGCTNVGKSTLFNA 51
+VG NVGKST F+A
Sbjct: 5 VVGKPNVGKSTFFSA 19
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 35.9 bits (84), Expect = 9e-04
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 35 VYLVGCTNVGKSTLFNAFLQS 55
V +VG NVGKS+LFN L+
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKK 24
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 38 VGCTNVGKSTLFNA 51
VG NVGKSTLFNA
Sbjct: 7 VGLPNVGKSTLFNA 20
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
G +NVGKSTL L K PG T
Sbjct: 6 FAGRSNVGKSTLIYR-----LTGKKVR-------RGKRPGVT 35
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 35.9 bits (84), Expect = 0.001
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 38 VGCTNVGKSTLFNA 51
VG NVGKSTLFNA
Sbjct: 8 VGLPNVGKSTLFNA 21
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 38 VGCTNVGKSTLFNA 51
VG NVGKST F A
Sbjct: 26 VGMPNVGKSTFFRA 39
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 35.6 bits (82), Expect = 0.002
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 11/52 (21%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKI 88
++G VGKS+ N+ + SP+ L + +
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQ-----------VVRVSPFQAEGLRPVMVSRTM 81
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 35.5 bits (83), Expect = 0.002
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
+G V +VG NVGKSTL N L K+ A SP P TT
Sbjct: 7 SGFVAIVGKPNVGKSTLLNNLLGV---KV--------APISPRPQTT 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 38 VGCTNVGKSTLFNA 51
VG NVGKST FN
Sbjct: 28 VGLPNVGKSTFFNV 41
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 35.5 bits (83), Expect = 0.002
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
G V +VG NVGKSTL N L + K+ + SP GTT
Sbjct: 10 VGYVAIVGKPNVGKSTLLNNLLGT---KV--------SIISPKAGTT 45
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 35.1 bits (82), Expect = 0.003
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 32 AGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
G + +VG NVGKSTL N L KI + TS TT
Sbjct: 8 CGFIAIVGRPNVGKSTLLNKLLGQ---KI--------SITSRKAQTT 43
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 33.8 bits (77), Expect = 0.007
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 11/52 (21%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKI 88
++G VGKS+ N+ + + SP+ +
Sbjct: 44 VMGKGGVGKSSTVNSIIGER-----------VVSISPFQSEGPRPVMVSRSR 84
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 33.8 bits (78), Expect = 0.008
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 12/42 (28%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
L GC NVGK++LFNA L ++ + WPG T
Sbjct: 10 LAGCPNVGKTSLFNA-----LTG-------TKQYVANWPGVT 39
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 33.4 bits (77), Expect = 0.010
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 12/42 (28%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
LVG NVGK+T+FNA L R WPG T
Sbjct: 8 LVGNPNVGKTTIFNA-----LTG-------LRQHVGNWPGVT 37
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 32.5 bits (75), Expect = 0.016
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
L+G NVGKST+FNA L WPG T
Sbjct: 12 LIGNPNVGKSTIFNA-----LTG-------ENVYIGNWPGVT 41
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 32.5 bits (75), Expect = 0.019
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 37 LVGCTNVGKSTLFNA 51
L+G NVGKST+FNA
Sbjct: 8 LIGNPNVGKSTIFNA 22
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 32.6 bits (75), Expect = 0.020
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 35 VYLVGCTNVGKSTLFNA 51
L+G N GK+TLFNA
Sbjct: 4 ALLIGNPNCGKTTLFNA 20
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 32.3 bits (74), Expect = 0.023
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 37 LVGCTNVGKSTLFNA 51
L+G N GK++LFN
Sbjct: 8 LIGNPNSGKTSLFNL 22
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 32.3 bits (74), Expect = 0.024
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 37 LVGCTNVGKSTLFNA 51
L+G N GK+TLFN
Sbjct: 8 LIGNPNSGKTTLFNQ 22
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 32.5 bits (73), Expect = 0.028
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIK 61
V + G + GK++ L+ ++ +
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGSR 94
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 31.7 bits (72), Expect = 0.047
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 16/50 (32%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATT--SPWPGTTLNL 81
+ L G NVGKS+ N +SRA + TT NL
Sbjct: 31 TIILSGAPNVGKSSFMNI--------------VSRANVDVQSYSFTTKNL 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 31.6 bits (71), Expect = 0.056
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 37 LVGCTNVGKSTLFNAFL-QSDLCKIKASDLISRATTSPWP 75
+ G T GKS+ N + + A + T P
Sbjct: 74 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP 113
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.9 bits (69), Expect = 0.076
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT-TSPWPGTTLNLLKEIIKIQ-TVCKV 94
+VG + +GKSTL N+ +DL + R T + + + + +++ T+
Sbjct: 13 VVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDT 72
Query: 95 KELGKKI 101
G +
Sbjct: 73 PGFGDAV 79
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 30.9 bits (69), Expect = 0.085
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 37 LVGCTNVGKSTLFNAFLQSDL 57
+VG + +GKSTL N+ +DL
Sbjct: 23 VVGESGLGKSTLINSLFLTDL 43
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 0.094
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLC 58
+ ++G GKST NA + +L
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLL 95
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 30.6 bits (70), Expect = 0.096
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 34 DVYLVGCTNVGKSTL 48
DV LVG N GKS+L
Sbjct: 159 DVGLVGYPNAGKSSL 173
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.0 bits (68), Expect = 0.18
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
++G NVGKSTL N + ++ K T PG T
Sbjct: 123 ALIIGIPNVGKSTLINRLAKKNIAK-----------TGDRPGIT 155
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.5 bits (67), Expect = 0.22
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 34 DVYLVGCTNVGKSTLFNA 51
DV LVG +VGKSTL +
Sbjct: 160 DVGLVGFPSVGKSTLLSV 177
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.8 bits (64), Expect = 0.38
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASD 64
LVG T GKS N+ L + +
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGTAA 61
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 28.8 bits (65), Expect = 0.38
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 38 VGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
VG N GKST+ N PG T
Sbjct: 105 VGVPNTGKSTIINKLKGKRASS-----------VGAQPGIT 134
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 28.7 bits (65), Expect = 0.41
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 43 VGKSTLFNAFLQSDLCKIKASDLISRATT-SPWPG 76
GK+T+ N L+ I S +S TT + G
Sbjct: 38 CGKTTVANKLLEKQKNNIVKS--VS-VTTRAARKG 69
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.5 bits (62), Expect = 0.91
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 18/70 (25%)
Query: 8 EGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLIS 67
GRE + + LVL G + VG+S + NA L + K +
Sbjct: 9 SGRENLYFQGRKT------LVLI--------GASGVGRSHIKNALLSQNPEKFVYP--VP 52
Query: 68 RATT-SPWPG 76
TT P
Sbjct: 53 -YTTRPPRKS 61
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug
gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 27.8 bits (61), Expect = 1.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
VY+ G +GK+T +
Sbjct: 7 VYIDGPHGMGKTTTTQLLVA 26
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 27.6 bits (62), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
G + VGKS+L NA L +I +D +S +
Sbjct: 220 FAGQSGVGKSSLLNALLGLQN-EILTND-VSNVS 251
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 27.1 bits (60), Expect = 1.7
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 16/57 (28%)
Query: 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT--TSPWPGTTLNL 81
+V V + G NVGKSTL A ++ A + +P TT +
Sbjct: 162 VVDLEIPTVVIAGHPNVGKSTLLKA--------------LTTAKPEIASYPFTTRGI 204
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A
{Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A*
1p73_A* 1p75_A*
Length = 334
Score = 27.0 bits (59), Expect = 1.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 35 VYLVGCTNVGKSTLFNAF 52
+YL G +GKST
Sbjct: 10 IYLDGVYGIGKSTTGRVM 27
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATT-SPWPG 76
L+G VG+ + N + + I TT P
Sbjct: 10 LLGAHGVGRRHIKNTLITKHPDRFAYP--IP-HTTRPPKKD 47
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics,
PSI-2, protein structure initiative; HET: MSE; 1.53A
{Clostridium acetobutylicum atcc 824}
Length = 140
Score = 26.4 bits (57), Expect = 2.2
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 2 ELWPALEGREVILVARPEPNIVSADLVLSSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIK 61
E + G+ +++ A E + + +L L G VY NV F + Q D K+
Sbjct: 52 EQFILSAGKAILITAEKENDKFNIELTLMEKGKVY-----NVPAECWFYSITQKD-TKMM 105
Query: 62 ASDLISRATTSPWPGTTLNLLKE 84
+ + S +L KE
Sbjct: 106 ---YVQDSNCSMDNSDFCDLSKE 125
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKAS 63
+ LVG T GKS N+ L+ + K
Sbjct: 25 IILVGKTGTGKSAAGNSILRKQAFESKLG 53
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 26.4 bits (59), Expect = 2.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 37 LVGCTNVGKSTLFNAFLQSDL 57
L G + VGKS++ + +L
Sbjct: 170 LAGPSGVGKSSILSRLTGEEL 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 26.4 bits (59), Expect = 2.6
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 21 NIVSADLVLSSAG----------DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
N V+S+ +V G +N GKS+ N L K S A
Sbjct: 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNT-----LTNQK-----SLAR 54
Query: 71 TSPWPGTT 78
TS PG T
Sbjct: 55 TSKTPGRT 62
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 26.4 bits (59), Expect = 2.7
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 21/68 (30%)
Query: 21 NIVSADLVLSSAG----------DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
I +LV + +V VG +NVGKS+L NA + A
Sbjct: 2 IIRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-----------AF 50
Query: 71 TSPWPGTT 78
S PG T
Sbjct: 51 VSKTPGKT 58
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 26.7 bits (58), Expect = 2.7
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 35 VYLVGCTNVGKSTLFNAFLQS 55
+YL G +GK+T FL
Sbjct: 15 IYLDGAYGIGKTTAAEEFLHH 35
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 26.3 bits (58), Expect = 2.8
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCK-------IKASDLISRATTSPWPGTTLNLLKEIIK 87
+YL G +GKS L A K + + G+ + +
Sbjct: 155 LYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN 214
Query: 88 IQ 89
+
Sbjct: 215 VP 216
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 26.1 bits (58), Expect = 2.9
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 20/68 (29%)
Query: 21 NIVSADLVLSSAG----------DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
+ A + ++ G +N GKST N LC K A
Sbjct: 8 LLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINV-----LCNQK-----RLAF 57
Query: 71 TSPWPGTT 78
S PG T
Sbjct: 58 ASKTPGRT 65
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 26.0 bits (58), Expect = 2.9
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 21 NIVSADLVLSSAG----------DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
+ +++V+S+ ++ L G +NVGKS+ N+ L K + A
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINS-----LINRK-----NLAR 51
Query: 71 TSPWPGTT 78
TS PG T
Sbjct: 52 TSSKPGKT 59
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 26.4 bits (57), Expect = 3.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 37 LVGCTNVGKSTLFNAFLQSDL 57
+VG + +GKSTL N+ +DL
Sbjct: 42 VVGESGLGKSTLINSLFLTDL 62
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 25.9 bits (57), Expect = 4.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 17 RPEPNIVSADL---VLSSAGDVYLVGCT---NVGKSTLFNAF 52
P +S L ++ G+ +G T GKST AF
Sbjct: 35 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF 76
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 25.6 bits (57), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
G + VGKS+L NA + +L ++ ++ IS
Sbjct: 178 FAGQSGVGKSSLLNA-ISPEL-GLRTNE-ISEHL 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 25.6 bits (57), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRAT 70
+ G + VGKS+L NA + L K++ S+ +S
Sbjct: 174 MAGLSGVGKSSLLNA-INPGL-KLRVSE-VSEKL 204
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 25.5 bits (57), Expect = 4.7
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 43 VGKSTLFNAFLQSDLCKIKASDLISRATT-SPWPG 76
VGK T+ A + S IS TT P G
Sbjct: 19 VGKGTVREAVFKDPETSFDYS--IS-MTTRLPREG 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 26.0 bits (57), Expect = 4.8
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 16/102 (15%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKV 94
+ L G GK+ + L++ S S ATT LL + K
Sbjct: 1307 LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP-------ELLLKTFDHHCEYKR 1359
Query: 95 KELGKKILLSQVKGK---------NMSKTEKKPLQPQYSLIK 127
G+ +L GK N+ T+K Q + I+
Sbjct: 1360 TPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIR 1401
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.9 bits (56), Expect = 4.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 37 LVGCTNVGKSTLFNAFLQSDL 57
VG T +GKSTL + +
Sbjct: 47 CVGETGLGKSTLMDTLFNTKF 67
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 25.8 bits (56), Expect = 5.1
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKAS 63
LVG T GKS N+ L +
Sbjct: 26 LVGRTGAGKSATGNSILGQRRFFSRLG 52
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 25.7 bits (56), Expect = 5.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 27 LVLSSAGDVYLVGCTNVGKSTLFNAFLQSD 56
V+ +G G +GKS L N F++
Sbjct: 23 SVVGLSGTEKEKGQCGIGKSCLCNRFVRPS 52
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 25.0 bits (55), Expect = 5.7
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 37 LVGCTNVGKSTLFNA-----FLQSDLCKIKASDLISRATTSPW 74
++G GKS+L +A + + IK + +
Sbjct: 28 IIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTY 70
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 25.6 bits (55), Expect = 5.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
VY+ G +GK+T +
Sbjct: 52 VYIDGPHGMGKTTTTQLLVA 71
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 25.1 bits (56), Expect = 5.9
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 43 VGKSTLFNAFLQSDLCKIKASDLISRATT-SPWPG 76
VGK T+ + K S IS TT G
Sbjct: 17 VGKGTVRKRIFEDPSTSYKYS--IS-MTTRQMREG 48
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 25.4 bits (56), Expect = 5.9
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCK-------IKASDLISRATTSPWPGTTLNLLKEIIK 87
+YL G VGK+ L A L K + +L S T L I K
Sbjct: 57 LYLHGSFGVGKTYLLAAIANE-LAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK 115
Query: 88 IQ 89
+
Sbjct: 116 VP 117
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 25.1 bits (55), Expect = 9.2
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 17 RPEPNIVSADL---VLSSAGDVYLVGCT---NVGKSTLFNAF 52
R + DL VL G VG T VGKST +A
Sbjct: 34 RADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDAL 75
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 24.8 bits (54), Expect = 9.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 28 VLSSAGDVYLVGCT---NVGKSTLFNAF 52
+L +G+ + VG T VGKST A
Sbjct: 72 LLPDSGNAHRVGITGVPGVGKSTAIEAL 99
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 24.8 bits (55), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 43 VGKSTLFNAFLQSD-LCKIKASDLISRATT-SPWPG 76
GKS+L A L++ L + S +S TT P PG
Sbjct: 27 AGKSSLIQALLKTQPLYDTQVS--VS-HTTRQPRPG 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.378
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,730,178
Number of extensions: 88309
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 87
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)