RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18211
(127 letters)
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 43.9 bits (102), Expect = 6e-07
Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 12/48 (25%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN 80
+ G +NVGKSTL + PG T
Sbjct: 1 ATIIFAGRSNVGKSTLIYRLTG------------KKVRRGKRPGVTRK 36
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.1 bits (97), Expect = 3e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
V +VG NVGKSTLFN ++ +A G T
Sbjct: 2 TVLIVGRPNVGKSTLFNKLVKKK-----------KAIVEDEEGVT 35
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 41.6 bits (96), Expect = 4e-06
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 11/49 (22%)
Query: 30 SSAGDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
S G + +VG NVGKSTL N L + TS TT
Sbjct: 3 SYCGFIAIVGRPNVGKSTLLNKLLGQK-----------ISITSRKAQTT 40
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 40.9 bits (94), Expect = 8e-06
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 11/45 (24%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGT 77
G V +VG NVGKSTL N L A SP P T
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVK-----------VAPISPRPQT 39
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 40.3 bits (93), Expect = 2e-05
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCK 93
++ +VG NVGKST F+A + +P TT+ + T
Sbjct: 2 EIGVVGKPNVGKSTFFSA-----ATL-------VDVEIANYPFTTIEANVGVTYAITDHP 49
Query: 94 VKELGK 99
KELG
Sbjct: 50 CKELGC 55
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 38.9 bits (89), Expect = 4e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSD 56
DV LVG N GKS+L A ++
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAH 25
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 38.8 bits (89), Expect = 5e-05
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSD 56
DV LVG +VGKSTL + +
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAK 25
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 37.6 bits (86), Expect = 8e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLC 58
+ +VG NVGKSTL N L D
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRA 26
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 37.4 bits (85), Expect = 1e-04
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V + G N GKS+L NA +
Sbjct: 4 VVIAGRPNAGKSSLLNALAGRE 25
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 37.5 bits (86), Expect = 2e-04
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN 80
+VG NVGKST F A +S L + +P T++
Sbjct: 15 IVGMPNVGKSTFFRAITKSVLGNP-----------ANYPYATID 47
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 36.6 bits (83), Expect = 3e-04
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V +VG NVGKSTLFNA L +
Sbjct: 11 VAIVGRPNVGKSTLFNAILNKE 32
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 35.5 bits (80), Expect = 7e-04
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLC 58
V G +N GKS+ N
Sbjct: 19 VAFAGRSNAGKSSALNTLTNQKSL 42
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 35.2 bits (80), Expect = 0.001
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKI 88
+ ++G VGKS+ N+ + + SP+ +
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGER-----------VVSISPFQSEGPRPVMVSRSR 77
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 34.2 bits (78), Expect = 0.002
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN 80
+VG NVGKSTLFNA L K + + +P T+
Sbjct: 7 IVGLPNVGKSTLFNA-----LTK-------AGIEAANYPFCTIE 38
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 33.6 bits (75), Expect = 0.003
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 21 NIVSADLVLSSAGD----------VYLVGCTNVGKSTLFNAF 52
+ +++V+S+ + L G +NVGKS+ N+
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSL 43
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 32.3 bits (72), Expect = 0.010
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ + G N GK++L
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDS 27
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 32.0 bits (72), Expect = 0.011
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 7/45 (15%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTT 78
+V + G T GKS+ N + A + T
Sbjct: 58 NVAVTGETGSGKSSFINTLR-------GIGNEEEGAAKTGVVEVT 95
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 32.0 bits (71), Expect = 0.012
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 33 GDVYLVGCTNVGKSTLFNAFLQSDLCKI 60
G + +G N GK+TL + L +
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLATL 28
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 31.8 bits (71), Expect = 0.012
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLN 80
+ L+G VG+ + N + + I T P
Sbjct: 6 LVLLGAHGVGRRHIKNTLITKHPDRFAYP--IPHTTRPPKKDEENG 49
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 31.2 bits (69), Expect = 0.020
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKAS 63
+ ++G N GK+T+ F D+ I +
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPT 33
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 31.2 bits (69), Expect = 0.021
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ ++G GK+T+ +
Sbjct: 8 ILILGLDGAGKTTILYRLQVGE 29
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 31.1 bits (69), Expect = 0.026
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKV 94
V L G + GKSTL Q S +S T +P PG + + + +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFS--VSHTTRNPRPGEEDGKDYYFVTREMMQRD 60
Query: 95 KELGKKILLSQVKG 108
G I ++ G
Sbjct: 61 IAAGDFIEHAEFSG 74
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 30.0 bits (66), Expect = 0.050
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V VG + GK+ LF L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLTGQ 24
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 29.3 bits (64), Expect = 0.082
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V ++G + VGK++L + ++
Sbjct: 5 VIILGDSGVGKTSLMHRYVN 24
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 29.3 bits (64), Expect = 0.087
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ LVG GK+T N
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQ 26
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 29.3 bits (64), Expect = 0.088
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG VGKS++ + +
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 29.3 bits (65), Expect = 0.093
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 34 DVYLVGCTNVGKSTLFNAFLQSD 56
G + VGKS+L NA
Sbjct: 99 TTVFAGQSGVGKSSLLNAISPEL 121
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 28.9 bits (63), Expect = 0.11
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V ++G + VGK++L N ++
Sbjct: 5 VIILGDSGVGKTSLMNQYVN 24
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.9 bits (63), Expect = 0.12
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ +VG GK+T+ +
Sbjct: 3 ILMVGLDAAGKTTILYKLKLGE 24
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 0.12
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V L+G VGKSTL N F
Sbjct: 6 VVLIGEQGVGKSTLANIFAGVH 27
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.7 bits (63), Expect = 0.13
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G ++VGK++ +
Sbjct: 8 ILIIGNSSVGKTSFLFRYAD 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.9 bits (63), Expect = 0.15
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG VGKS L F+Q
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ 28
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.8 bits (63), Expect = 0.15
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG VGKS L +Q
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 0.15
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPG 76
+ + G + GKSTL S +S T +P G
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFS--VSSTTRTPRAG 43
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.6 bits (63), Expect = 0.16
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ L+G VGK+ L F Q
Sbjct: 8 IVLIGNAGVGKTCLVRRFTQ 27
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.4 bits (62), Expect = 0.16
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ L+G N GK+TL D
Sbjct: 19 ILLLGLDNAGKTTLLKQLASED 40
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 28.7 bits (63), Expect = 0.17
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G + VGKS+L F
Sbjct: 10 ILIIGESGVGKSSLLLRFTD 29
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 28.3 bits (62), Expect = 0.19
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V LVG + VGK+ L F
Sbjct: 9 VMLVGDSGVGKTCLLVRFKDGA 30
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.5 bits (62), Expect = 0.20
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKI 60
+ +G N GK+TL + L +
Sbjct: 16 LVFLGLDNAGKTTLLHMLKDDRLGQH 41
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 0.20
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ + G VGKS L FL
Sbjct: 5 LAIFGRAGVGKSALVVRFLT 24
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.4 bits (62), Expect = 0.20
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V + G VGKS+L F++
Sbjct: 5 VAVFGAGGVGKSSLVLRFVK 24
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.3 bits (62), Expect = 0.21
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V ++G VGKS L F+
Sbjct: 6 VVVLGSGGVGKSALTVQFVT 25
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.3 bits (62), Expect = 0.22
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
++G GKS L + F++
Sbjct: 8 FLVIGNAGTGKSCLLHQFIE 27
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 0.22
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V L+G VGKS L F +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVE 25
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 0.22
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ L+G + VGK+ + F +
Sbjct: 9 LLLIGDSGVGKTCVLFRFSE 28
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.23
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G +NVGK+ L F
Sbjct: 5 IIVIGDSNVGKTCLTYRFCA 24
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.0 bits (61), Expect = 0.24
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V L+G T VGKS++ F++
Sbjct: 7 VCLLGDTGVGKSSIMWRFVE 26
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.0 bits (61), Expect = 0.25
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
V +VG N GK+T+ F ++
Sbjct: 18 VIIVGLDNAGKTTILYQFSMNE 39
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.0 bits (61), Expect = 0.25
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +G +VGK++L F+
Sbjct: 3 LVFLGEQSVGKTSLITRFMY 22
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.1 bits (61), Expect = 0.25
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 35 VYLVGCTNVGKSTLFNAFLQS 55
+ +VG VGKS L F+QS
Sbjct: 8 LVVVGGGGVGKSALTIQFIQS 28
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.9 bits (61), Expect = 0.29
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
++G VGKS L + F +
Sbjct: 7 YIIIGDMGVGKSCLLHQFTE 26
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.9 bits (61), Expect = 0.30
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V L+G + VGKS L + F +
Sbjct: 7 VVLIGDSGVGKSNLLSRFTR 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 27.8 bits (60), Expect = 0.31
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G +VGKS+L F++
Sbjct: 7 IAILGYRSVGKSSLTIQFVE 26
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.8 bits (61), Expect = 0.32
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ L+G + VGKS L F++
Sbjct: 5 ILLIGDSGVGKSCLLVRFVE 24
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 0.32
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +G + VGK+T +
Sbjct: 8 LLALGDSGVGKTTFLYRYTD 27
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 27.6 bits (60), Expect = 0.32
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V L+G VGK++L + +
Sbjct: 6 VVLLGEGCVGKTSLVLRYCE 25
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 0.32
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V +VG VGKS L F+
Sbjct: 7 VIMVGSGGVGKSALTLQFMY 26
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.7 bits (60), Expect = 0.33
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD 56
+ L+G VGKS++ F+ +D
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSND 27
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.6 bits (60), Expect = 0.35
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G VGKS L F+Q
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ 25
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.7 bits (60), Expect = 0.36
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ L+G + VGKS+L F++
Sbjct: 9 LVLLGESAVGKSSLVLRFVK 28
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 0.38
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWP 75
V L G + VGKST+ L+ + + S + P
Sbjct: 5 VVLSGPSAVGKSTVVRC-LRERIPNLHFSVSATTRAPRPGE 44
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.6 bits (60), Expect = 0.38
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISR 68
+ +VG GK+ + + + +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 38
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.9 bits (60), Expect = 0.39
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 37 LVGCTNVGKSTLFNA-----FLQSDLCKIKASDLISRATTSPW 74
++G GKS+L +A + + IK + +
Sbjct: 28 IIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTY 70
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 0.41
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG VGKS L F Q
Sbjct: 7 LVVVGDGGVGKSALTIQFFQ 26
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.3 bits (59), Expect = 0.43
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+VG VGK+ L ++
Sbjct: 8 CVVVGDGAVGKTCLLISYTT 27
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.3 bits (59), Expect = 0.44
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG GK+ L +
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 27.2 bits (59), Expect = 0.44
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V L+G VGKS+L N ++
Sbjct: 9 VILLGDGGVGKSSLMNRYVT 28
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 27.3 bits (59), Expect = 0.45
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ LVG GK+T L
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.2 bits (59), Expect = 0.47
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
++G T VGKS L F
Sbjct: 6 YIIIGDTGVGKSCLLLQFTD 25
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 27.3 bits (59), Expect = 0.48
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ ++G GKS+L + FL
Sbjct: 8 LGVLGDARSGKSSLIHRFLT 27
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 27.3 bits (59), Expect = 0.52
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+VG VGK+ L ++
Sbjct: 12 CVVVGDGAVGKTCLLMSYAN 31
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.1 bits (59), Expect = 0.61
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ L+G + VGKS L F
Sbjct: 9 LLLIGNSGVGKSCLLLRFSD 28
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 26.9 bits (58), Expect = 0.61
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+ +VG + GK+ L + F +
Sbjct: 5 IVVVGDSQCGKTALLHVFAK 24
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 0.70
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSD-LCKIKASDLISRATTSPWPGTT 78
+ + GKS+L A L++ L + S +S T P PG
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVS--VSHTTRQPRPGEV 47
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 26.5 bits (57), Expect = 0.77
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
+VG VGK+ L ++
Sbjct: 6 CVVVGDGAVGKTCLLISYTT 25
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 26.5 bits (57), Expect = 0.99
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 35 VYLVGCTNVGKSTLFNAF 52
+ ++G GK+T+
Sbjct: 20 ILILGLDGAGKTTILYRL 37
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.2 bits (56), Expect = 1.2
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 37 LVGCTNVGKSTLFNAFLQ 54
+ G + GK+TL +
Sbjct: 10 IFGHIDHGKTTLSKVLTE 27
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 26.1 bits (56), Expect = 1.3
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 35 VYLVGCTNVGKSTLFNAF 52
+ ++G GK+T+
Sbjct: 15 ILMLGLDAAGKTTILYKL 32
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 25.8 bits (56), Expect = 1.6
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLIS---RATTSPW 74
+ G + VGKS+L NA ++ R TT+
Sbjct: 98 STMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA 140
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 25.7 bits (55), Expect = 1.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 37 LVGCTNVGKSTLFNAF 52
L+G GKST+
Sbjct: 7 LLGAGESGKSTIVKQM 22
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.6 bits (55), Expect = 1.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 37 LVGCTNVGKSTLFNAF 52
L+G GKST
Sbjct: 7 LLGAGESGKSTFLKQM 22
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.7 bits (55), Expect = 1.7
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 37 LVGCTNVGKSTLFNAF 52
L+G GKST
Sbjct: 7 LLGTGESGKSTFIKQM 22
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 25.4 bits (54), Expect = 1.9
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWP 75
++G + GK+TL + S + +A + + P
Sbjct: 10 VLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIP 48
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 25.6 bits (55), Expect = 2.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 37 LVGCTNVGKSTLFNAFLQSDLC 58
+VG + GKS++ F+ D
Sbjct: 31 VVGGQSAGKSSVLENFVGRDFL 52
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.5 bits (55), Expect = 2.1
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 37 LVGCTNVGKSTLFNAF 52
L+G GKST+
Sbjct: 11 LLGAGESGKSTIVKQM 26
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 25.1 bits (53), Expect = 2.7
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 25 ADLVLS-SAGDVYLVGCTNVGKSTLFNA 51
+D V+ G ++G GKS+L +A
Sbjct: 15 SDTVVEFKEGINLIIGQNGSGKSSLLDA 42
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 24.8 bits (53), Expect = 3.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDL 57
+ +VG + GKS++ + D
Sbjct: 27 IVVVGSQSSGKSSVLENIVGRDF 49
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 24.7 bits (52), Expect = 4.2
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 35 VYLVGCTNVGKSTLFNAFLQSDLCKIKASDLISRATTSPWPGTTLNLLKEIIKIQTVCKV 94
++G GKS++ + + L R + + L E+ K
Sbjct: 32 TLVLGLRRTGKSSIIKIGINE--LNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVK 89
Query: 95 KELGKKILLSQVKGKNMSKTEKKPLQPQ 122
+ L ++G + E K +
Sbjct: 90 RLPSLLKALKNIQGIVIMGNEIKFNWNR 117
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 23.8 bits (50), Expect = 6.8
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 37 LVGCTNVGKSTLFNAFLQ 54
+ GK+TL +
Sbjct: 7 FAAWSGTGKTTLLKKLIP 24
>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate
desuccinylase, catalytic domain {Neisseria meningitidis
[TaxId: 487]}
Length = 262
Score = 23.8 bits (50), Expect = 7.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 78 TLNLLKEIIKIQTV 91
+L L KE+I +V
Sbjct: 5 SLELAKELISRPSV 18
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.0 bits (51), Expect = 7.6
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 17 RPEPNIVSADL---VLSSAGDVYLVGCT---NVGKSTLFNAFLQ 54
P +S L ++ G+ +G T GKST AF
Sbjct: 33 HPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 23.6 bits (51), Expect = 7.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 35 VYLVGCTNVGKSTLFNAFL 53
V VG + GKSTL N
Sbjct: 47 VAFVGMSGGGKSTLINLIP 65
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 23.8 bits (50), Expect = 8.6
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 35 VYLVGCTNVGKSTLFNAFLQ 54
V VG GK+TL F +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 23.7 bits (51), Expect = 9.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 35 VYLVGCTNVGKSTLFNAFL 53
+ G + GKST+F+
Sbjct: 31 IAFAGPSGGGKSTIFSLLE 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.378
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,557
Number of extensions: 16941
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 101
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.3 bits)