BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18216
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
Query: 90 TKPLPEDLATWIEGA-EKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKWEE 148
KPLP++ +++ + E GV+ FSLGS + + + E + + I + A+ PQ +V+W+++
Sbjct: 4 AKPLPKEXEDFVQSSGENGVVVFSLGSXVSNXT--EERANVIASALAQIPQ-KVLWRFDG 60
Query: 149 EQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY 208
+ L N KW+PQ+DLL HPK + FIT GG + E++Y +P +GIP F DQ
Sbjct: 61 NKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPD 120
Query: 209 NVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 255
N+ K G +DF++ S+ L N +K V+ + SY + V ++S +
Sbjct: 121 NIAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRI 167
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 324 HPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAEN 383
HP + FIT GG + E++Y +P +GIP F DQ N+ K G + F++ ++ +
Sbjct: 84 HPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXSSTD 143
Query: 384 LYSNVKEILYNNSYMDTVKRISAL 407
L + +K ++ + SY + V ++S +
Sbjct: 144 LLNALKRVINDPSYKENVXKLSRI 167
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Query: 154 LPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 213
+P NV +W+PQ D+L K FIT G+ S E++ VP++ +P +Q N + I
Sbjct: 303 VPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI 360
Query: 214 KNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSK 257
LG+G ++ D V+ E L + VL S +R++A+ +
Sbjct: 361 VELGLGRHIPRDQVTAE---KLREAVLAVASDPGVAERLAAVRQ 401
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 330 FITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNVK 389
FIT G+ S E++ VP++ +P +Q N + I LG+G ++ D + AE L +
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLR---E 381
Query: 390 EILYNNSYMDTVKRISALSK 409
+L S +R++A+ +
Sbjct: 382 AVLAVASDPGVAERLAAVRQ 401
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 29/197 (14%)
Query: 72 PRPVFPNTINVGPTHIGDTKPLPEDLATWI-EGAEKGVIYFSLGSNMRSASLEESKRSAI 130
P PV PNT W+ E V+Y S G+ E S
Sbjct: 251 PPPVVPNTTGC---------------LQWLKERKPTSVVYISFGTVTTPPPAEVVALSEA 295
Query: 131 LTTFAKFPQYRVIWKWEEEQLPGLPSNVICRK--------WLPQHDLLAHPKIKLFITQG 182
L ++ P IW ++ LP + + W PQ ++LAH + F+T
Sbjct: 296 LEA-SRVP---FIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHC 351
Query: 183 GLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTEVLYNLMKEVLY 241
G SL ESV VPLI PFFGDQ N +++++ L IG ++ + L + ++L
Sbjct: 352 GWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILS 411
Query: 242 NTSYMDTVKRISALSKT 258
+ + AL +T
Sbjct: 412 QEKGKKLRENLRALRET 428
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMTFDSINA 381
+H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG +
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTK 399
Query: 382 ENLYSNVKEILYNNSYMDTVKRISALSKT 410
L S +IL + + AL +T
Sbjct: 400 SGLMSCFDQILSQEKGKKLRENLRALRET 428
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 103 GAEKGVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVIWKWEEEQLPG----LPS 156
GAEK V+ SLGS + A E R+ F P + ++ + + P LP
Sbjct: 230 GAEK-VVLVSLGSAFTKQPAFYRECVRA-----FGNLPGWHLVLQIGRKVTPAELGELPD 283
Query: 157 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNL 216
NV W+PQ +L + LF+T G QE + P+I +P DQ N +++ L
Sbjct: 284 NVEVHDWVPQLAILR--QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGL 341
Query: 217 GIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISA 254
G+ + + + ++L ++ + ++RI A
Sbjct: 342 GVARKLATEEATADLLRETALALVDDPEVARRLRRIQA 379
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNV 388
LF+T G QE + P+I +P DQ N +++ LG+ + + A+ L
Sbjct: 302 LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETA 361
Query: 389 KEILYNNSYMDTVKRISA 406
++ + ++RI A
Sbjct: 362 LALVDDPEVARRLRRIQA 379
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 80 INVGPTHIGDTKPLPED---LATWIEGAE-KGVIYFSLGSNMRSASLEESKRSAILTTFA 135
+NVGP ++ + D W++ E V+Y S GS + E + + L
Sbjct: 243 LNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECG 302
Query: 136 KFPQYRVIWKWEEEQLPGLPSNVICR--------KWLPQHDLLAHPKIKLFITQGGLQSL 187
FP IW + + LP + R W PQ ++L H + +F+T G S+
Sbjct: 303 -FP---FIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 188 QESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTEVLYNLMK 237
E + VP+I PFFGDQ N + ++ L IG +D ++ E + ++
Sbjct: 359 LECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALE 409
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 324 HPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN---LGIG 371
H ++ +F+T G S+ E + VP+I PFFGDQ N + ++ +G+G
Sbjct: 343 HSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG 393
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 163 WLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNL-GIGTY 221
W PQ +L HP I F+T G S ES+ VP++ PFF DQ + + I N IG
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 222 MDFDSVSTEVLYNLMKEVL 240
+D +V E L L+ EV+
Sbjct: 420 ID-TNVKREELAKLINEVI 437
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN 367
+HP+I F+T G S ES+ VP++ PFF DQ + + I N
Sbjct: 368 NHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 157 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNV-KIIK- 214
+IC W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N +++K
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 215 -NLGIGTYMDF----DSVSTEVLYNLMKEVLYNTSYM-DTVKRISALSKTQMM 261
+G+G +D+ D V+ E + +K+++ S + V+ + +S+ ++
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 9/113 (7%)
Query: 157 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNV-KIIK- 214
+IC W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N +++K
Sbjct: 334 GMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKE 392
Query: 215 -NLGIGTYMDF----DSVSTEVLYNLMKEVLYNTSYM-DTVKRISALSKTQMM 261
+G+G +D+ D V+ E + +K+++ S + V+ + +S+ ++
Sbjct: 393 WGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 163 WLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 213
W PQ +LAHP F+T G S ESV +PLI P + +Q N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 365
+HP+ F+T G S ESV +PLI P + +Q N ++
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 154 LPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY-NVKI 212
LP NV +W+P H +LAH + L T G ++ E+ VPL+ +P F + + +
Sbjct: 279 LPPNVEAHQWIPFHSVLAHARACL--THGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 213 IKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTS 244
+ LG+G+ + D + + ++ + +++
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERLAADSA 368
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 155 PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK 214
P+NV +W+P LL I GG +L ++ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 215 NLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWI 271
LGIG + S+ E L+ + + + + +S +M P +TA +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAAXLV 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 155 PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIK 214
P+NV +W+P LL I GG +L ++ VP IP QD N ++
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 215 NLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWI 271
LGIG + S+ E L+ + + + + +S +M P +TA +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVRQEMS-----EMPPPAETAAKLV 396
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 97 LATWIEGAEK-GVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVI---WKWEEEQ 150
L W A+ V+ SLG+ N R + R+ F P + V + +
Sbjct: 237 LGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARA-----FDGQPWHVVXTLGGQVDPAA 291
Query: 151 LPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNV 210
L LP NV +W+P +L + +T GG +L E++Y+ PL+ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 211 KIIKNLGIGTYMDFDSVSTEVL 232
+ + LG+G + + + L
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTL 371
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 325 PNIKLF------ITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDS 378
P++K+ +T GG +L E++Y+ PL+ +P D + + LG+G + +
Sbjct: 306 PHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEK 365
Query: 379 INAENL 384
+ + L
Sbjct: 366 ADGDTL 371
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 97 LATWIEGAEK-GVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVI---WKWEEEQ 150
L W A+ V+ SLG+ N R + R+ F P + V + +
Sbjct: 237 LGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARA-----FDGQPWHVVXTLGGQVDPAA 291
Query: 151 LPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNV 210
L LP NV +W+P +L + +T GG +L E++Y+ PL+ +P D
Sbjct: 292 LGDLPPNVEAHRWVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXA 349
Query: 211 KIIKNLGIGTYMDFDSVSTEVL 232
+ + LG+G + + + L
Sbjct: 350 RRVDQLGLGAVLPGEKADGDTL 371
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 325 PNIKLF------ITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDS 378
P++K+ +T GG +L E++Y+ PL+ +P D + + LG+G + +
Sbjct: 306 PHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEK 365
Query: 379 INAENL 384
+ + L
Sbjct: 366 ADGDTL 371
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 14/164 (8%)
Query: 91 KPLP----EDLATWIEGAE--KGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIW 144
+P+P DL W+ + + ++Y +LG++ S E R+AI A ++
Sbjct: 221 RPVPFAEQGDLPAWLSSRDTARPLVYLTLGTS--SGGTVEVLRAAI-DGLAGLDADVLVA 277
Query: 145 KWEEEQLPGL---PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIP 201
+ GL P+NV W+PQ LL H + L + GG + ++ VP + P
Sbjct: 278 SGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFP 335
Query: 202 FFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSY 245
+ GD N + + G G ++ D++S + + K +L SY
Sbjct: 336 WAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESY 379
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 12/179 (6%)
Query: 89 DTKPLPEDLATWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKWEE 148
D +PL +LA +++ A +Y GS A ++ R AI A + + W +
Sbjct: 222 DERPLSPELAAFLD-AGPPPVYLGFGSLGAPA---DAVRVAIDAIRAHGRRVILSRGWAD 277
Query: 149 EQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY 208
LP ++ + L ++ I GG + + P I +P DQ Y
Sbjct: 278 LVLPDDGADCFAIGEVNHQVLFG--RVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPY 335
Query: 209 NVKIIKNLGIGTYMD-----FDSVSTEVLYNLMKEV-LYNTSYMDTVKRISALSKTQMM 261
+ LG+G D FDS+S + L E T+ T++ A +++
Sbjct: 336 YAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLL 394
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 154 LPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNV--K 211
LP NV W P H LL + GG ++ ++ +P + P DQ + +
Sbjct: 281 LPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTARE 338
Query: 212 IIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 255
+ GIG D V ++L L+ + T+ + + + AL
Sbjct: 339 AVSRRGIGLVSTSDKVDADLLRRLIGDESLRTAAREVREEMVAL 382
>pdb|2HN1|A Chain A, Crystal Structure Of A Cora Soluble Domain From A.
Fulgidus In Complex With Co2+
Length = 266
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 357 DQDYNVKIIKNLGIGTYMTFDSINA----------ENLYSNVKEILYNNSYMDTVKRISA 406
D+ KI + LGI D +N ++L+ +K +LYN + + ++S
Sbjct: 77 DESLIAKICEFLGIHPLAAEDILNTAQRVKIEDYDDHLFLVLKILLYNETL--EIDQLSL 134
Query: 407 LSKTQMMSPRDTAVWWI----EYVLKSGGNLRHLQPDY 440
+ K +++ + +WI LKSGG +R L DY
Sbjct: 135 VLKKNLVATFEEREYWILDSIRSRLKSGGRMRKLAGDY 172
>pdb|3CYI|A Chain A, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Atp:mg2+
Length = 110
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 89 DTKPLPEDLATWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 130
D +P WI+GA+ G ++S G + R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGSHRYAAYQQLQRETI 86
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 347 VPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNVKEILYNNSYMDTVKRISA 406
+ L G P FG Q + +I++ + G Y TFDS +N+ K+++ D+ +RISA
Sbjct: 229 ILLAGYPPFGGQ-TDQEILRKVEKGKY-TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISA 286
>pdb|1XW4|X Chain X, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex
With Adp
Length = 110
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 89 DTKPLPEDLATWIEGAEKGVIYFSLGSNMRSASLEESKRSAI 130
D +P WI+GA+ G ++S G R A+ ++ +R I
Sbjct: 45 DPDSVPPIDVLWIKGAQGGDYFYSFGGXHRYAAYQQLQRETI 86
>pdb|2QVK|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
pdb|2QVM|A Chain A, The Second Ca2+-Binding Domain Of The Na+-Ca2+ Exchanger
Is Essential For Regulation: Crystal Structures And
Mutational Analysis
Length = 192
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 29 RVVIQGQNELAKKYFNHTGKPTIQEMARNKSILL-----LTNSWLYQYPRPVF 76
+V+ + E K +F G+P + EM+ K++LL T + Y Y +PVF
Sbjct: 77 KVIDDEEYEKNKTFFLEIGEPRLVEMSEKKALLLNELGGFTITGKYLYGQPVF 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,714,104
Number of Sequences: 62578
Number of extensions: 645411
Number of successful extensions: 1499
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1466
Number of HSP's gapped (non-prelim): 42
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)