RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18216
(487 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 230 bits (590), Expect = 2e-74
Identities = 59/166 (35%), Positives = 103/166 (62%), Gaps = 4/166 (2%)
Query: 91 KPLPEDLATWIEGA-EKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVIWKWEEE 149
KPLP+++ +++ + E GV+ FSLGS + + + E + + I + A+ PQ +V+W+++
Sbjct: 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSN--MTEERANVIASALAQIPQ-KVLWRFDGN 61
Query: 150 QLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYN 209
+ L N KW+PQ+DLL HPK + FIT GG + E++Y +P++GIP F DQ N
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDN 121
Query: 210 VKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISAL 255
+ +K G +DF+++S+ L N +K V+ + SY + V ++S +
Sbjct: 122 IAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRI 167
Score = 119 bits (300), Expect = 6e-32
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 324 HPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAEN 383
HP + FIT GG + E++Y +P++GIP F DQ N+ +K G + F+++++ +
Sbjct: 84 HPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTD 143
Query: 384 LYSNVKEILYNNSYMDTVKRISAL 407
L + +K ++ + SY + V ++S +
Sbjct: 144 LLNALKRVINDPSYKENVMKLSRI 167
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 170 bits (433), Expect = 3e-48
Identities = 57/296 (19%), Positives = 100/296 (33%), Gaps = 37/296 (12%)
Query: 3 GFTNKMTFLERLQNYVFIFFMHFYMNRVVIQGQNELAKKYFNHTGKPTIQEMARNKSILL 62
+ ER + Y F + L + P +S++L
Sbjct: 148 PMWREPRQTERGRAYYARF-------------EAWLKENGITEH--PDTFASHPPRSLVL 192
Query: 63 LTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGA-EKGVIYFSLGSNMRSAS 121
+ + R VG + W A + V+ SLGS
Sbjct: 193 IPKALQPHADRVDEDVYTFVGACQ-----GDRAEEGGWQRPAGAEKVVLVSLGSAFTKQ- 246
Query: 122 LEESKRSAILTTFAKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKL 177
+ + F P + ++ K +L LP NV W+PQ +L L
Sbjct: 247 --PAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQAD--L 302
Query: 178 FITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMK 237
F+T G QE + P+I +P DQ N +++ LG+ + + + ++L
Sbjct: 303 FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETAL 362
Query: 238 EVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPD-HWDMP 292
++ + ++RI A + + R A IE L + RH + + D P
Sbjct: 363 ALVDDPEVARRLRRIQAEMAQEGGTRR--AADLIEAELPA----RHERQEPVGDRP 412
Score = 90.6 bits (225), Expect = 7e-20
Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 328 KLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSN 387
LF+T G QE + P+I +P DQ N +++ LG+ + + A+ L
Sbjct: 301 DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRET 360
Query: 388 VKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQP 438
++ + ++RI A + + R A IE L + RH +
Sbjct: 361 ALALVDDPEVARRLRRIQAEMAQEGGTRR--AADLIEAELPA----RHERQ 405
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 164 bits (417), Expect = 5e-46
Identities = 49/262 (18%), Positives = 90/262 (34%), Gaps = 17/262 (6%)
Query: 23 MHFYMNRVVIQGQNELAKKYFNHTGKPTIQEMARNKSILLLTNSWLYQYPRPVFP-NTIN 81
+++ L+ H E + ++ +Q N
Sbjct: 175 EGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYTF 234
Query: 82 VGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTTFAKFPQYR 141
VGPT+ + + G + V+ +LGS L+
Sbjct: 235 VGPTYGDRSHQGTWEG----PGDGRPVLLIALGSAFTDH---LDFYRTCLSAVDGLDW-H 286
Query: 142 VIWKW----EEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPL 197
V+ + L +P NV +W+PQ D+L FIT G+ S E++ VP+
Sbjct: 287 VVLSVGRFVDPADLGEVPPNVEVHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPM 344
Query: 198 IGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSK 257
+ +P +Q N + I LG+G ++ D V+ E L + V + + + + +
Sbjct: 345 VAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQEIR 404
Query: 258 TQMMSPRDTAVWWIEYVLKSGG 279
A +E +L G
Sbjct: 405 EA--GGARAAADILEGILAEAG 424
Score = 91.7 bits (228), Expect = 3e-20
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 325 PNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENL 384
FIT G+ S E++ VP++ +P +Q N + I LG+G ++ D + AE L
Sbjct: 320 TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKL 379
Query: 385 YSNVKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGG 431
V + + + + + + A +E +L G
Sbjct: 380 REAVLAVASDPGVAERLAAVRQEIREA--GGARAAADILEGILAEAG 424
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 134 bits (340), Expect = 3e-35
Identities = 44/234 (18%), Positives = 84/234 (35%), Gaps = 29/234 (12%)
Query: 61 LLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWI-EGAEKGVIYFSLGS--NM 117
++ Q F +G T + W + V+ SLG+ N
Sbjct: 190 IVFLPKSF-QPFAETFDERF----AFVGPTLTGRDGQPGWQPPRPDAPVLLVSLGNQFNE 244
Query: 118 RSASLEESKRSAILTTFAKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQHDLLAHP 173
A FA P V+ + L LP NV +W+P H +LAH
Sbjct: 245 HPEFFR-----ACAQAFADTPW-HVVMAIGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH- 297
Query: 174 KIKLFITQGGLQSLQESVYFEVPLIGIPFFG-DQDYNVKIIKNLGIGTYMDFDSVSTEVL 232
+ +T G ++ E+ VPL+ +P F + + + + LG+G+ + D + +
Sbjct: 298 -ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASI 356
Query: 233 YNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQP 286
++ + +++ + V+R+ + A +E L + P
Sbjct: 357 REAVERLAADSAVRERVRRMQRDILS--SGGPARAADEVEAY------LGRVAP 402
Score = 73.2 bits (180), Expect = 4e-14
Identities = 19/115 (16%), Positives = 48/115 (41%), Gaps = 9/115 (7%)
Query: 325 PNIKLFITQGGLQSLQESVYFEVPLIGIPFFG-DQDYNVKIIKNLGIGTYMTFDSINAEN 383
+ + +T G ++ E+ VPL+ +P F + + + + LG+G+ + D + +
Sbjct: 296 AHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPAS 355
Query: 384 LYSNVKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQP 438
+ V+ + +++ + V+R+ + A +E L + P
Sbjct: 356 IREAVERLAADSAVRERVRRMQRDILS--SGGPARAADEVEAY------LGRVAP 402
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 132 bits (333), Expect = 3e-34
Identities = 45/235 (19%), Positives = 86/235 (36%), Gaps = 21/235 (8%)
Query: 48 KPTIQEMARNKSILLLTNSWLYQYPRPVFP-NTINVGPTHIGDTKPLPEDLATWIEGAEK 106
+ + + + L+ +Q F + VGP D + L E +
Sbjct: 192 RSVVDCWNHVEQLNLVFVPKAFQIAGDTFDDRFVFVGPC-FDDRRFLGEWTR---PADDL 247
Query: 107 GVIYFSLGS--NMRSASLEESKRSAILTTFAKFPQYRVI----WKWEEEQLPGLPSNVIC 160
V+ SLG+ N R F P V+ + + L LP NV
Sbjct: 248 PVVLVSLGTTFNDRPGFFR-----DCARAFDGQPW-HVVMTLGGQVDPAALGDLPPNVEA 301
Query: 161 RKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGT 220
+W+P +L + + +T GG+ +L E++Y+ PL+ +P D + + LG+G
Sbjct: 302 HRWVPHVKVL--EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGA 359
Query: 221 YMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVL 275
+ + + L + V + + + V+ + + A +E L
Sbjct: 360 VLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
Score = 73.6 bits (181), Expect = 3e-14
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 325 PNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENL 384
+ +T GG+ +L E++Y+ PL+ +P D + + LG+G + + + + L
Sbjct: 312 EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTL 371
Query: 385 YSNVKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVL 427
+ V + + + + V+ + + A +E L
Sbjct: 372 LAAVGAVAADPALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 120 bits (302), Expect = 5e-30
Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 22/220 (10%)
Query: 61 LLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGS--NMR 118
+ + L + P + P + LP L+ + A ++Y +LG+
Sbjct: 199 IDIFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLS-SRDTARP-LVYLTLGTSSGGT 256
Query: 119 SASLEESKRSAILTTFAKFPQYRVI----WKWEEEQLPGLPSNVICRKWLPQHDLLAHPK 174
L A + A V+ + L +P+NV W+PQ LL P
Sbjct: 257 VEVLR-----AAIDGLAGLDA-DVLVASGPSLDVSGLGEVPANVRLESWVPQAALL--PH 308
Query: 175 IKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYN 234
+ L + GG + ++ VP + P+ GD N + + G G ++ D++S + +
Sbjct: 309 VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSG 368
Query: 235 LMKEVLYNTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 272
K +L SY + ++A ++ M D V +
Sbjct: 369 AAKRLLAEESYRAGARAVAA----EIAAMPGPDEVVRLLP 404
Score = 62.4 bits (152), Expect = 1e-10
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNV 388
L + GG + ++ VP + P+ GD N + + G G ++ D+I+ +++
Sbjct: 311 LVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAA 370
Query: 389 KEILYNNSYMDTVKRISALSKTQM--MSPRDTAVWWIE 424
K +L SY + ++A ++ M D V +
Sbjct: 371 KRLLAEESYRAGARAVAA----EIAAMPGPDEVVRLLP 404
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 111 bits (279), Expect = 5e-27
Identities = 33/232 (14%), Positives = 68/232 (29%), Gaps = 13/232 (5%)
Query: 60 ILLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMRS 119
L + RP T+ G + D +PL +L ++ +Y GS
Sbjct: 176 QPWLAADPVLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSP-PVYVGFGSGPAP 234
Query: 120 ASLEESKRSAILTTFAKFPQYRVI--WKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKL 177
A + + RV+ W + + + L ++
Sbjct: 235 AEAAR----VAIEAVRAQGR-RVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAA 287
Query: 178 FITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMK 237
+ GG + P + +P DQ Y + +LG+G D + + E L +
Sbjct: 288 VVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALA 347
Query: 238 EVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDHW 289
L ++ + A +E + + ++ +
Sbjct: 348 TAL-TPGIRARAAAVAG--TIRTDGTTVAAKLLLEAISRQRSSVPAAKLAAA 396
Score = 58.7 bits (142), Expect = 1e-09
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 3/118 (2%)
Query: 324 HPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAEN 383
+ + GG + P + +P DQ Y + +LG+G + E+
Sbjct: 282 FGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341
Query: 384 LYSNVKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDYW 441
L + + L ++ + A +E + + ++ +
Sbjct: 342 LSAALATAL-TPGIRARAAAVAG--TIRTDGTTVAAKLLLEAISRQRSSVPAAKLAAA 396
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 111 bits (279), Expect = 9e-27
Identities = 36/208 (17%), Positives = 68/208 (32%), Gaps = 14/208 (6%)
Query: 71 YPRPVFPNTINVGPTHIGDTKPLPEDLATWI-EGAEKGVIYFSLGSNMRSASLEESKRSA 129
+ D P + W+ + E+ + +LG + R S+ +
Sbjct: 232 PAAIRLDTGLKTVGMRYVDYNG-PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEE 290
Query: 130 ILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQGGLQS 186
+L +I + E + +P NV ++P H LL P + GG S
Sbjct: 291 LLGAVGDVDA-EIIATFDAQQLEGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGS 347
Query: 187 LQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTSYM 246
+ VP + +P D + + G G + ++ + L +K VL + ++
Sbjct: 348 WHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHR 407
Query: 247 DTVKRISALSKTQM--MSPRDTAVWWIE 272
R+ M V E
Sbjct: 408 AGAARMRD----DMLAEPSPAEVVGICE 431
Score = 62.9 bits (153), Expect = 7e-11
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 325 PNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENL 384
P + GG S + VP + +P D + + G G + + + L
Sbjct: 334 PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393
Query: 385 YSNVKEILYNNSYMDTVKRISALSKTQM--MSPRDTAVWWIE 424
+VK +L + ++ R+ M V E
Sbjct: 394 RESVKRVLDDPAHRAGAARMRD----DMLAEPSPAEVVGICE 431
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 110 bits (276), Expect = 1e-26
Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 11/229 (4%)
Query: 61 LLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMRSA 120
+ + +P + + G + D +PL +LA +++ +Y GS A
Sbjct: 194 PWVAADPVLAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLGFGSLGAPA 252
Query: 121 SLEESKRSAILTTFAKFPQYRVIWK-WEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFI 179
+ + ++ + W + LP ++ + L ++ I
Sbjct: 253 DAVR----VAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAAVI 306
Query: 180 TQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEV 239
GG + + P I +P DQ Y + LG+G D + + L +
Sbjct: 307 HHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA 366
Query: 240 LYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDH 288
L ++ +T A ++ V + + L+ H
Sbjct: 367 L-TPETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPTVSALEHHH 412
Score = 58.7 bits (142), Expect = 2e-09
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 3/114 (2%)
Query: 324 HPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAEN 383
+ I GG + + P I +P DQ Y + LG+G ++
Sbjct: 299 FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358
Query: 384 LYSNVKEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQ 437
L + + L ++ +T A ++ V + + L+
Sbjct: 359 LSAALATAL-TPETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPTVSALE 409
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 101 bits (253), Expect = 2e-23
Identities = 42/237 (17%), Positives = 77/237 (32%), Gaps = 22/237 (9%)
Query: 49 PTIQEMARNKSILLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGV 108
+ + LL + L P + + G + D +PLP +L ++
Sbjct: 183 EDVFGYGHGERPLLAADPVLA--PLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSP-P 239
Query: 109 IYFSLGSNMRSASLEESKRSAILTTFAKFPQYRVI--WKWEEEQLPGLPSNVICRKWLPQ 166
++ GS + ++ + + + RVI W E LP + +
Sbjct: 240 VHIGFGS-SSGRGIADAAK-VAVEAIRAQGR-RVILSRGWTELVLPDDRDDCFAIDEVNF 296
Query: 167 HDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDS 226
L ++ I G + + VP + IP DQ Y + LGIG D +
Sbjct: 297 QALF--RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPT 354
Query: 227 VSTEVLYNLMKEVLYNTSYMDTVKRISALSKT-----------QMMSPRDTAVWWIE 272
+ E L + VL + ++ + T + AV +E
Sbjct: 355 PTFESLSAALTTVL-APETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPALE 410
Score = 56.8 bits (137), Expect = 8e-09
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 12/111 (10%)
Query: 325 PNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENL 384
+ I G + + VP + IP DQ Y + LGIG + E+L
Sbjct: 301 RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESL 360
Query: 385 YSNVKEILYNNSYMDTVKRISALSKT-----------QMMSPRDTAVWWIE 424
+ + +L + ++ + T + AV +E
Sbjct: 361 SAALTTVL-APETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPALE 410
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 100 bits (250), Expect = 3e-23
Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 21/213 (9%)
Query: 70 QYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMRSASLEESKRS- 128
+ ++ + + E ++ + + G+ + +
Sbjct: 195 EAQPKPGT----TKMRYVPYNGRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGL 250
Query: 129 ----AILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQ 181
A+ K V+ + L LP V+ P ++ P + +
Sbjct: 251 SLLQALSQELPKLGF-EVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIM--PACDVVVHH 307
Query: 182 GGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLY 241
GG + + VP + +P + + +++ G G + ++ E + +
Sbjct: 308 GGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRD 367
Query: 242 NTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 272
++SY+ +R++A +M + V IE
Sbjct: 368 DSSYVGNARRLAA----EMATLPTPADIVRLIE 396
Score = 57.8 bits (140), Expect = 3e-09
Identities = 17/98 (17%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNV 388
+ + GG + + VP + +P + + +++ G G + ++ E++ +
Sbjct: 303 VVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAAC 362
Query: 389 KEILYNNSYMDTVKRISALSKTQM--MSPRDTAVWWIE 424
I ++SY+ +R++A +M + V IE
Sbjct: 363 ARIRDDSSYVGNARRLAA----EMATLPTPADIVRLIE 396
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 92.5 bits (230), Expect = 1e-20
Identities = 31/219 (14%), Positives = 62/219 (28%), Gaps = 21/219 (9%)
Query: 62 LLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWI-EGAEKGVIYFSLGSNMRSA 120
L Q + P W + +G + +A
Sbjct: 179 LDPCPPSLQASDAPQGAPVQYVPY------NGSGAFPAWGAARTSARRVCICMGRMVLNA 232
Query: 121 SLEESKRSAILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKL 177
+ A+ + L LP N + +P + L +L
Sbjct: 233 TGPAPLLRAVAAATELPGV-EAVIAVPPEHRALLTDLPDNARIAESVPLNLFL--RTCEL 289
Query: 178 FITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFD--SVSTEVLYNL 235
I GG + + +P + +P + DQ + + G G + + E +
Sbjct: 290 VICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDS 349
Query: 236 MKEVLYNTSYMDTVKRISALSKTQM--MSPRDTAVWWIE 272
+ VL +T + ++S ++ M V +E
Sbjct: 350 IATVLGDTGFAAAAIKLSD----EITAMPHPAALVRTLE 384
Score = 50.9 bits (122), Expect = 4e-07
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 8/100 (8%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFD--SINAENLYS 386
L I GG + + +P + +P + DQ + + G G + + + E
Sbjct: 289 LVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTD 348
Query: 387 NVKEILYNNSYMDTVKRISALSKTQM--MSPRDTAVWWIE 424
++ +L + + ++S ++ M V +E
Sbjct: 349 SIATVLGDTGFAAAAIKLSD----EITAMPHPAALVRTLE 384
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 87.6 bits (217), Expect = 7e-19
Identities = 27/194 (13%), Positives = 57/194 (29%), Gaps = 10/194 (5%)
Query: 67 WLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWI-EGAEKGVIYFSLGSNMRSASLEES 125
++ P + P L W+ + + + GS + S + +
Sbjct: 170 FIDICPPSLRPANAAPARMMRHVATSRQCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRN 229
Query: 126 KR--SAILTTFAKFPQYRVI---WKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFIT 180
+ ++ +I E L W P + P L +
Sbjct: 230 FDFLRGLAKDLVRWDV-ELIVAAPDTVAEALRAEVPQARVG-WTPLDVVA--PTCDLLVH 285
Query: 181 QGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVL 240
G S + VP + IP + + + + G + STE + + +E+
Sbjct: 286 HAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQ 345
Query: 241 YNTSYMDTVKRISA 254
+Y + +S
Sbjct: 346 AKDTYARRAQDLSR 359
Score = 54.8 bits (132), Expect = 2e-08
Identities = 12/78 (15%), Positives = 29/78 (37%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNV 388
L + G S + VP + IP + + + + G + + E + +
Sbjct: 282 LLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSC 341
Query: 389 KEILYNNSYMDTVKRISA 406
+E+ ++Y + +S
Sbjct: 342 QELQAKDTYARRAQDLSR 359
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 82.6 bits (204), Expect = 3e-17
Identities = 37/220 (16%), Positives = 72/220 (32%), Gaps = 29/220 (13%)
Query: 61 LLLTNSWLYQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMRSA 120
LLL + R V G L + L + + ++G+ A
Sbjct: 200 LLLEAEPEGWFMRWVPYG----GGA------VLGDRLP---PVPARPEVAITMGTIELQA 246
Query: 121 SLEESKRSAILTTFAKFPQYRVIW---KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKL 177
+ I+ + + + L LP NV W P H LL
Sbjct: 247 FGIGAVE-PIIAAAGEVDA-DFVLALGDLDISPLGTLPRNVRAVGWTPLHTLL--RTCTA 302
Query: 178 FITQGGLQSLQESVYFEVPLIGIPFFGDQDYN---VKIIKNLGIGTYMDFDSVSTEVLYN 234
+ GG ++ ++ +P + P DQ + + + GIG D V ++L
Sbjct: 303 VVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSR-RGIGLVSTSDKVDADLL-- 359
Query: 235 LMKEVLYNTSYMDTVKRISALSKTQMMSPRDTAVWWIEYV 274
+ ++ + S + + + +P +T +E +
Sbjct: 360 --RRLIGDESLRTAAREVREEM-VALPTPAETVRRIVERI 396
Score = 46.0 bits (109), Expect = 2e-05
Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 3/98 (3%)
Query: 329 LFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINAENLYSNV 388
+ GG ++ ++ +P + P DQ + G + S + +
Sbjct: 302 AVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTS--DKVDADLL 359
Query: 389 KEILYNNSYMDTVKRISALSKTQMMSPRDTAVWWIEYV 426
+ ++ + S + + + +P +T +E +
Sbjct: 360 RRLIGDESLRTAAREVREEM-VALPTPAETVRRIVERI 396
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 66.9 bits (164), Expect = 4e-12
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 35/190 (18%)
Query: 73 RPVFPNTINVGPTHIGDTKPL-PEDLA--TWIEGAEKG-VIYFSLGS--NMRSASLEE-- 124
+ +N+GP ++ P+ P W++ + V+Y S G+ A +
Sbjct: 234 KSKLKTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALS 293
Query: 125 -----SKRSAILTTFAKFPQYRVIWKWEEEQLPGLPSNVICR--------KWLPQHDLLA 171
S+ F IW ++ LP + + W PQ ++LA
Sbjct: 294 EALEASRVP--------F-----IWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLA 340
Query: 172 HPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFDSVSTE 230
H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG ++ +
Sbjct: 341 HEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKS 400
Query: 231 VLYNLMKEVL 240
L + ++L
Sbjct: 401 GLMSCFDQIL 410
Score = 41.5 bits (98), Expect = 5e-04
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIG 371
+H + F+T G SL ESV VPLI PFFGDQ N +++++ L IG
Sbjct: 340 AHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG 389
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 65.3 bits (160), Expect = 2e-11
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 45/195 (23%)
Query: 73 RPVFPNTINVGPTH-IGDTKPLPEDLA--TWIEGAEKG-VIYFSLGS--NMRSASLEE-- 124
F +NVGP + + + ++ W++ E V+Y S GS L
Sbjct: 236 NSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALA 295
Query: 125 -----SKRSAILTTFAKFPQYRVIW---KWEEEQLP----------GLPSNVICRKWLPQ 166
F IW +E+LP G ++ W PQ
Sbjct: 296 ESLEECGFP--------F-----IWSFRGDPKEKLPKGFLERTKTKGK---IV--AWAPQ 337
Query: 167 HDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIGTYMDFD 225
++L H + +F+T G S+ E + VP+I PFFGDQ N + ++ L IG +D
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNG 397
Query: 226 SVSTEVLYNLMKEVL 240
++ E + ++ +
Sbjct: 398 VLTKESIKKALELTM 412
Score = 39.9 bits (94), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN-LGIG 371
H ++ +F+T G S+ E + VP+I PFFGDQ N + ++ L IG
Sbjct: 342 KHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 58.8 bits (143), Expect = 2e-09
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 39/184 (21%)
Query: 69 YQYPRPVFPNTINVGPTH--IGDTKPLPEDLA--TWIEGAEKG-VIYFSLGS--NMRSAS 121
Q P P VGP E+ W++ G V+Y S GS + +
Sbjct: 226 LQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTL-TCE 284
Query: 122 --------LEESK-------RSAILTTFAKFPQYRVIWKWEEEQLP----------GLPS 156
L +S+ RS + + LP G
Sbjct: 285 QLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQ-TDPLTFLPPGFLERTKKRGF-- 341
Query: 157 NVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KN 215
+ W PQ +LAHP F+T G S ESV +PLI P + +Q N ++ ++
Sbjct: 342 --VIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSED 399
Query: 216 LGIG 219
+
Sbjct: 400 IRAA 403
Score = 41.4 bits (98), Expect = 5e-04
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KNLGIG 371
+HP+ F+T G S ESV +PLI P + +Q N ++ +++
Sbjct: 354 AHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAA 403
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 56.9 bits (138), Expect = 7e-09
Identities = 41/199 (20%), Positives = 65/199 (32%), Gaps = 55/199 (27%)
Query: 69 YQYPRPVFPNTINVGPTHIGDTKPLPEDLATWIEGAE----------KGVIYFSLGSNMR 118
P VGP D K P + K V++ GS
Sbjct: 231 LYDHDEKIPPIYAVGPLL--DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGV 288
Query: 119 SAS----------LEESKRSAILTTFAKFPQYRVIW--KWEEEQLP------------GL 154
S L+ S R +W E++ P G+
Sbjct: 289 SFGPSQIREIALGLKHSG-------------VRFLWSNSAEKKVFPEGFLEWMELEGKGM 335
Query: 155 PSNVICRKWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII- 213
+ W PQ ++LAH I F++ G S+ ES++F VP++ P + +Q N +
Sbjct: 336 ---IC--GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV 390
Query: 214 KNLGIGTYMDFDSVSTEVL 232
K G+G + D +
Sbjct: 391 KEWGVGLGLRVDYRKGSDV 409
Score = 40.7 bits (96), Expect = 0.001
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII-KNLGIG 371
+H I F++ G S+ ES++F VP++ P + +Q N + K G+G
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 56.2 bits (136), Expect = 1e-08
Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 52/206 (25%)
Query: 73 RPVFPNTINVGPTH--IGDTKPLPEDLAT----WIEGAE----------KGVIYFSLGS- 115
P+ +GP + T + + + W E E V+Y + GS
Sbjct: 246 SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGST 305
Query: 116 -NMRSASLEE-------SKRSAILTTFAKFPQYRVIW-------KWEEEQLP-GLPSNVI 159
M L E K+S F +W + +
Sbjct: 306 TVMTPEQLLEFAWGLANCKKS--------F-----LWIIRPDLVIGGSVIFSSEFTNEIA 352
Query: 160 CR----KWLPQHDLLAHPKIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKN 215
R W PQ +L HP I F+T G S ES+ VP++ PFF DQ + + I N
Sbjct: 353 DRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICN 412
Query: 216 -LGIGTYMDFDSVSTEVLYNLMKEVL 240
IG +D + V E L L+ EV+
Sbjct: 413 EWEIGMEIDTN-VKREELAKLINEVI 437
Score = 40.8 bits (96), Expect = 8e-04
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 323 SHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKII 365
+HP+I F+T G S ES+ VP++ PFF DQ + + I
Sbjct: 368 NHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 57/402 (14%), Positives = 112/402 (27%), Gaps = 111/402 (27%)
Query: 124 ESKRSAILTTFAKFPQYRVIWKWEEEQLPGLPSNVICRKWLPQHDLLAHPKIKLFITQG- 182
+R + F +Y V + L R+ L + L + + G
Sbjct: 113 IEQRDRLYNDNQVFAKYNV---SRLQPYLKL------RQALLE--LRPAKNVLIDGVLGS 161
Query: 183 GLQSLQESVYFEVPLIGIPFFG----------DQDYNVKIIKNL--------------GI 218
G + V + F + +++++ L
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 219 GTYMDFDSVSTEVLYNLMKEVLYNTSY--MDTV---KRISAL---SKTQMMSPRDTAVWW 270
+ S+ E L L+K Y + V K +A K +++ R V
Sbjct: 222 NIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQV-- 277
Query: 271 IEYVLKSGGNLRHLQPDHWDMPWYQYFGLDVFLVLL--------------SPVILVLYGI 316
+++ S H+ DH M + L L +P L I
Sbjct: 278 TDFL--SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSII 333
Query: 317 YKIISRSHPN----------------IKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDY 360
+ I R I+ + L+ + F+ + + F
Sbjct: 334 AESI-RDGLATWDNWKHVNCDKLTTIIESSLNV--LEPAEYRKMFD--RLSV--FPP--- 383
Query: 361 NVKI-IKNLGI-----GTYMTFDSINAENLYS----NVKEILY--NNSYMDTVKRISALS 408
+ I L + +N + YS KE + Y++ ++ +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL--KVKLEN 441
Query: 409 KTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDYWDMPWYQYYG 450
+ + + V Y + + L P Y D +Y + G
Sbjct: 442 EYAL---HRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 41.0 bits (95), Expect = 9e-04
Identities = 70/471 (14%), Positives = 144/471 (30%), Gaps = 118/471 (25%)
Query: 1 MIGFTNKMTFL--ERLQNYVFIFFMH---FYMN-------RVVIQGQNELAKKYFNHTGK 48
++G K T++ + +Y M F++N V++ +L
Sbjct: 158 VLGS-GK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDP 211
Query: 49 PTIQEMARNKSILLLTNSWLYQYPR----PVFPNTI----NV-GPTHI----GDTKPLPE 95
+ +I L +S + R + N + NV K L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-- 269
Query: 96 DLATWIEGAEKGVIYFSLGSNMRSASLEESKRSAILTT------FAKFPQYRVIWKWEEE 149
L T K V F + SL+ + LT K+ R +
Sbjct: 270 -LTT----RFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRP------Q 316
Query: 150 QLP-----GLP----------SNVICR--KWL-PQHDLLAHPKIKLFITQGGLQSLQESV 191
LP P + + W D L I+ + L+ +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSLNV--LEPAEYRK 373
Query: 192 YFEVPLIGIPFFGDQDYNVKI-IKNLGIG-TYMDFDSVSTEVLYNLMKEVLYNTSYMDTV 249
F+ + + F + I L + + V V+ L K L ++
Sbjct: 374 MFD--RLSV--FPP---SAHIPTILLSLIWFDVIKSDVM-VVVNKLHKYSLVEKQPKEST 425
Query: 250 KRISALS-KTQMMSPRDTAV--WWIE-YVLKSGGNLRHLQPDHWDMPWYQYFGLDVFLVL 305
I ++ + ++ + A+ ++ Y + + L P + D +Y + G + +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 306 LSPVILVLYGIY--------KIISRSHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFGD 357
+ + ++ KI H + + L +LQ+ +++ P+ D
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYK------PYICD 536
Query: 358 QDYNVKIIKNLGIGTYMTFDSINAENLYSNVKEILYNNSYMDTVKRISALS 408
D + + + + F ++E L + Y D ++ AL
Sbjct: 537 NDPKYERL----VNAILDF--------LPKIEENLICSKYTDLLRI--ALM 573
Score = 32.1 bits (72), Expect = 0.43
Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 45/197 (22%)
Query: 22 FMHFYMNRVVIQGQNELAKKYFNH----TGKPTIQEMARNKSILLLTNSWLYQYPRPVFP 77
++ +++ Q + + E A ++SI+ + Y P+
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DH--YNIPKTFDS 461
Query: 78 NTINVGPTHIGDTKPLPED----------LATWIEGAEKGV----IYFS---LGSNMRSA 120
+ D P D L IE E+ ++ L +R
Sbjct: 462 D----------DLIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 121 SLEESKRSAILTTFAKFPQYR-VIWKWEEEQLPGLPSNVICRKWLPQH--DLLAHPKIKL 177
S + +IL T + Y+ I + + L + ++ +LP+ +L+
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICD-NDPKYERLVNAIL--DFLPKIEENLICSKYTD- 566
Query: 178 FITQGGLQSLQESVYFE 194
+ + L + E+++ E
Sbjct: 567 -LLRIALMAEDEAIFEE 582
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-04
Identities = 69/408 (16%), Positives = 118/408 (28%), Gaps = 139/408 (34%)
Query: 33 QGQN-----ELAKKYFNHTGKPTIQEMARNKSILLLTNSWLYQYPRPVFPNTINVGPTHI 87
QG EL Y T + ++ + + L VF +
Sbjct: 163 QGNTDDYFEELRDLY--QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL------- 213
Query: 88 GDTKPLPEDLATWIEGAEK--GVIYFSLGSNMRSASLEESKRS--AI-LTTFAKFPQYRV 142
++ W+E Y S + S I + A Y V
Sbjct: 214 --------NILEWLENPSNTPDKDYLL------SIPI-----SCPLIGVIQLA---HYVV 251
Query: 143 IWKWEEEQLPGL-PSNVICR-KWLPQH--DLLAHPKIKLFITQGG-LQSLQESVYFEVPL 197
K L G P + K H L+ + I + +S SV
Sbjct: 252 TAK-----LLGFTPGELRSYLKGATGHSQGLVT----AVAIAETDSWESFFVSV---RKA 299
Query: 198 IGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNT----SYMDTVKRIS 253
I + FF +G+ Y + + S +++++ L N S M ++
Sbjct: 300 ITVLFF------------IGVRCYEAYPNTSLPP--SILEDSLENNEGVPSPMLSISN-- 343
Query: 254 ALSKTQMMSPRDTAVWWIEYVLKSGGNLRHLQPDHWDMPWYQYFGLDVFLVLL-SPVILV 312
L++ Q+ ++ N HL V + L+ LV
Sbjct: 344 -LTQEQVQD-------YVNKT-----N-SHLPAGK-----------QVEISLVNGAKNLV 378
Query: 313 -------LYGIYKIISRSHPNIKLFITQGGLQS----LQESVYFEV---PLIGIPF---- 354
LYG+ + R K G QS + + F P + PF
Sbjct: 379 VSGPPQSLYGLNLTL-R-----KAKAPSGLDQSRIPFSERKLKFSNRFLP-VASPFHSHL 431
Query: 355 ------FGDQDYNVKII----KNLGIGTYMTFDSINAENLYSNVKEIL 392
++D + K++ I Y TFD + L ++ E +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Score = 36.6 bits (84), Expect = 0.021
Identities = 59/386 (15%), Positives = 95/386 (24%), Gaps = 158/386 (40%)
Query: 73 RPVFPNTINVGPTHIGDTKPLPEDLATWIEGAEKGVIYFSLGSNMR---SASLEESKR-- 127
RP+ T++ G + +P F + S ++ + L E
Sbjct: 7 RPL---TLSHG--SLEHVLLVPTAS-------------FFIASQLQEQFNKILPEPTEGF 48
Query: 128 ------SAILTTFAKFPQYRVIWKWEEEQLPGLPSNVI-------CRKWLPQ---HDLLA 171
+ KF Y + E G V+ +L H L A
Sbjct: 49 AADDEPTTPAELVGKFLGY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 172 H---------PKIKLFI---------TQGGLQSLQESVYFE------VPLIGIPFFGDQD 207
K K I + S F L+ I FG Q
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI--FGGQ- 163
Query: 208 YNVKIIKNLG-IGTYMDFDSVSTEVLYNLMKEVLYNTSYMDTVKRISALSKTQMMSPRDT 266
G Y F+ E +++ LY T Y V
Sbjct: 164 ---------GNTDDY--FE----E-----LRD-LYQT-YHVLVG---------------- 185
Query: 267 AVWWIEYVLKSGGNLRHLQPDHWDMPWYQYFGLDVFLVLLSPVILVLYGIYKIISRSHPN 326
+ + S L L D GL++ L +P + P+
Sbjct: 186 -----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS-------------NTPD 227
Query: 327 IKLFITQGGLQSLQESVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMTFDSINA----- 381
+ S+ PLIG+ Y V K LG +
Sbjct: 228 KDYLL----------SIPISCPLIGVIQLA--HYVV-TAKLLGFTPGELRSYLKGATGHS 274
Query: 382 ---------------ENLYSNVKEIL 392
E+ + +V++ +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAI 300
Score = 31.9 bits (72), Expect = 0.64
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 27/108 (25%)
Query: 6 NKMTFLERLQNYVFIF------FMH-FYMNRVVIQGQNELAKK-------------YFNH 45
+++ F ER + F F H + +L K Y
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 46 TGKPTIQEMARNKSILLLTNSWLYQYPRPV-FPNTINVGPTHIGDTKP 92
G ++ + + SI + + PV + T THI D P
Sbjct: 464 DGS-DLRVL--SGSISERIVDCIIR--LPVKWETTTQFKATHILDFGP 506
Score = 29.2 bits (65), Expect = 3.4
Identities = 27/161 (16%), Positives = 48/161 (29%), Gaps = 56/161 (34%)
Query: 134 FAKFPQYRVIW----KWEEEQLPGLPSNVICRKWLPQHDLLAHPKIK--LFITQGGLQSL 187
+ + +W ++ G I +P F + G + +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTY-GFSILDIVIN---------NPVNLTIHFGGEKG-KRI 1684
Query: 188 QE---SVYFEVPLIGIPFFGDQDYNVKIIKNLGIGTYMDFDSVSTEVLYNLMKEVLYNTS 244
+E ++ FE + G + KI K + + ST + K +L T
Sbjct: 1685 RENYSAMIFETIVDG------KLKTEKIFKEI--------NEHSTSYTFRSEKGLLSATQ 1730
Query: 245 YMDTVKRISALSKTQMMSPRDTAVWWIEY----VLKSGGNL 281
+ TQ P T + E LKS G +
Sbjct: 1731 F------------TQ---PALTLM---EKAAFEDLKSKGLI 1753
>1t3c_A Neurotoxin type E; catalytic domain, E212Q mutant, light chain,
hydrolase; 1.90A {Clostridium botulinum} SCOP: d.92.1.7
PDB: 3d3x_A 1t3a_A 1zl5_A 1zl6_A 1zn3_A 1zkw_A 1zkx_A
Length = 421
Score = 30.1 bits (67), Expect = 1.8
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 297 FGLDVFLVLLSPVILVLYGIYKIISRSHPNIKLFITQGGLQSLQESVYFEVPLIGIPFFG 356
F D L L+ +I L+G+Y K ITQ Q+ + + FG
Sbjct: 201 FIQDPALTLMHQLIHSLHGLYGAKG---ITTKYTITQ--KQNPLITNIRGTNIEEFLTFG 255
Query: 357 DQDYNVKIIKNLGIGTYMTFDSINAENLYSNVKEILYNNSYMDTVKRI 404
D N II + T + + + S + ++ +N ++ K +
Sbjct: 256 GTDLN--IITSAQSNDIYTNLLADYKKIASKLSKVQVSNPLLNPYKDV 301
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.430
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,700,124
Number of extensions: 464712
Number of successful extensions: 873
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 53
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)