RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18219
(520 letters)
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 377 bits (970), Expect = e-126
Identities = 122/449 (27%), Positives = 206/449 (45%), Gaps = 22/449 (4%)
Query: 9 TTSTVKSFDQIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPG 68
T ++ +PGP + PL+G+L + G + H + ++KYG + + ++
Sbjct: 16 TDGETRNVTDLPGPTNWPLLGSLLEIFWKGG---LKKQHDTLAEYHKKYGQIFRMKL-GS 71
Query: 69 VSLVWVFTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRS 128
V + +P +E +YR E +P+R + YR R E Y GL+ G+EW R+RS
Sbjct: 72 FDSVHLGSPSLLEALYRTESAHPQRLEIKPWKAYRDHRNEAY---GLMILEGQEWQRVRS 128
Query: 129 ELQKGFSEIKHVRSHLDLVNQVMDEFIEL---RIGQRATFQDFLPELSRLYLEIMCLVAF 185
QK + + +N+V+ +F+E +R D EL++ E +CLV +
Sbjct: 129 AFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLY 188
Query: 186 EKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGP-QLWRKFDTPLYKKLKMAHGF 244
EKR + + + I A T S K P +L ++ +T +++ +A
Sbjct: 189 EKRFGLLQKET---EEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAHTLAWDT 245
Query: 245 IEEQALKFISQKSSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYT 304
I + I R+ L + LS++++ ++ LA ++T+A +
Sbjct: 246 IFKSVKPCIDN---RLQRYSQQPGADFLCDIYQQDHLSKKELYAAVTELQLAAVETTANS 302
Query: 305 TCFLLYHISRSASAQQRLFSAVKHL--KRGSVTSADYDGCAYAKAVLKETFRLSPISVGV 362
++LY++SR+ AQ+RL V+ + + + D Y KA LKE+ RL+P
Sbjct: 303 LMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFT 362
Query: 363 GRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYL 422
R L+K TVL Y +P GT+ QV F +F PERWL+++ P+
Sbjct: 363 TRTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKIN---PFA 419
Query: 423 VLPFGHGPRTCIARRSAEQNLQVLIMKTL 451
LPFG G R CI RR AE L + + +
Sbjct: 420 HLPFGIGKRMCIGRRLAELQLHLALCWII 448
Score = 87.8 bits (218), Expect = 1e-18
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 449 KTLAVTQNQVSCRLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSA 508
T+ QV F +F PERWL+K+ P+ LPFG G R CI RR A
Sbjct: 380 GTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKEKKIN---PFAHLPFGIGKRMCIGRRLA 436
Query: 509 EQNLQVLIMKI 519
E L + + I
Sbjct: 437 ELQLHLALCWI 447
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 375 bits (965), Expect = e-126
Identities = 113/454 (24%), Positives = 190/454 (41%), Gaps = 25/454 (5%)
Query: 9 TTSTVKSFDQIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPG 68
+T + + F++IP P + H F E ++H + ++ ++KYGP+ +E++
Sbjct: 1 STRSPRPFNEIPSPGDNGWLNLYH----FWRETGTHKVHLHHVQNFQKYGPIYREKL-GN 55
Query: 69 VSLVWVFTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRS 128
V V+V PED+ +++ EG PER Y G+L W + R
Sbjct: 56 VESVYVIDPEDVALLFKSEGPNPERFLIPPWVAYHQYY---QRPIGVLLKKSAAWKKDRV 112
Query: 129 ELQKGFSEIKHVRSHLDLVNQVMDEFIEL------RIGQRATFQDFLPELSRLYLEIMCL 182
L + + ++ L L++ V +F+ + + G D +L R E +
Sbjct: 113 ALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITN 172
Query: 183 VAFEKRLHSFTADQISSQSLSSKLIEAAYTA-NSCVLKTDNGPQLWRKFDTPLYKKLKMA 241
V F +R + + I+A Y ++ V + P L+R F T +K A
Sbjct: 173 VIFGERQGMLEEVV---NPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDHVAA 229
Query: 242 HGFIEEQALKFISQKSSRVAS--VQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGID 299
I +A + + + +L L + K+S DI ++L G+D
Sbjct: 230 WDVIFSKADIYTQNFYWELRQKGSVHHDYRGILYRLLGDSKMSFEDIKANVTEMLAGGVD 289
Query: 300 TSAYTTCFLLYHISRSASAQQRLFSAVKHL--KRGSVTSADYDGCAYAKAVLKETFRLSP 357
T++ T + LY ++R+ Q L + V + + KA +KET RL P
Sbjct: 290 TTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQAQGDMATMLQLVPLLKASIKETLRLHP 349
Query: 358 ISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQC 417
ISV + R L + VL Y +PA TL R +F P+ F P RWL +D
Sbjct: 350 ISVTLQRYLVNDLVLRDYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKDKNIT- 408
Query: 418 VSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKTL 451
+ L FG G R C+ RR AE + + ++ L
Sbjct: 409 --YFRNLGFGWGVRQCLGRRIAELEMTIFLINML 440
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 178 bits (453), Expect = 2e-50
Identities = 65/436 (14%), Positives = 130/436 (29%), Gaps = 43/436 (9%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPED 79
G L ++ + G + + G +V +
Sbjct: 8 RVSGGHDEHGHLEEFRTDPIGLMQRV--------RDELGDVGTF-QLAGKQVVLLSGSHA 58
Query: 80 IETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSEIKH 139
E +R ++ + Y P G + + R +
Sbjct: 59 NEFFFRAGDDDLDQA-----KAYPFMTP---IFGEGVVFDASPERRKEMLHNAALR-GEQ 109
Query: 140 VRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQISS 199
++ H + + I G+ D L + L + K+
Sbjct: 110 MKGHAATIEDQVRRMIA-DWGEAGEI-DLLDFFAELTIYTSSACLIGKKFRDQLDG---- 163
Query: 200 QSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQKSSR 259
Y + +++ A + ++ +
Sbjct: 164 ------RFAKLYHELERGTDPLAYVDPY--LPIESFRRRDEARNGLVALVADIMNGR--I 213
Query: 260 VASVQTNQATSLLENYLA------NPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHIS 313
+L+ +A P+ S +I GM + ++ AG TS+ T + L +
Sbjct: 214 ANPPTDKSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELM 273
Query: 314 RSASAQQRLFSAVKHL--KRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETV 371
R A + + L SV+ + VLKET RL P + + R+ E
Sbjct: 274 RHRDAYAAVIDELDELYGDGRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFE 333
Query: 372 LSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPR 431
+ G+ + G L +S R+ + FP P F+P R+ + ++ + +PFG G
Sbjct: 334 VQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDL-LNRWTWIPFGAGRH 392
Query: 432 TCIARRSAEQNLQVLI 447
C+ A ++ +
Sbjct: 393 RCVGAAFAIMQIKAIF 408
Score = 55.4 bits (134), Expect = 2e-08
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 516
R+ + FP P F+P R+ + ++ + +PFG G C+ A ++ +
Sbjct: 354 RIPEDFPDPHDFVPARYEQPRQEDL-LNRWTWIPFGAGRHRCVGAAFAIMQIKAIF 408
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 175 bits (446), Expect = 4e-49
Identities = 79/446 (17%), Positives = 168/446 (37%), Gaps = 48/446 (10%)
Query: 18 QIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTP 77
IPGP IG L + F+ ++ R YG ++ I + +
Sbjct: 46 SIPGPGYCMGIGPLISHGRFLWMGIGSACNYYN----RVYGEFMRVWISG-EETLIISKS 100
Query: 78 EDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSEI 137
+ + + S L L+ + + G + N + W R K S
Sbjct: 101 SSMFHIMKHNHYSSRFGSKLGLQCIGM-----HEKGIIFNNNPELWKTTRPFFMKALS-G 154
Query: 138 KHVRSHLDLVNQVMDEFIELRIGQRA---TFQDFLPELSRLYLEIMCLVAFEKRLHSFTA 194
+ + + + + ++ R+ + + D L L R+ L+ +
Sbjct: 155 PGLVRMVTVCAESLKTHLD-RLEEVTNESGYVDVLTLLRRVMLDTSNTLFLRI------- 206
Query: 195 DQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKK----LKMAHGFIEEQAL 250
+ ++ K+ + ++K P ++ K + LYKK +K IE
Sbjct: 207 -PLDESAIVVKIQGYFDAWQALLIK----PDIFFKI-SWLYKKYEKSVKDLKDAIE---- 256
Query: 251 KFISQKSSRVASVQTNQAT----SLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTC 306
I++K R+++ + + + L L+R ++ +++L+A DT + +
Sbjct: 257 VLIAEKRRRISTEEKLEECMDFATELILAEKRGDLTRENVNQCILEMLIAAPDTMSVSLF 316
Query: 307 FLLYHISRSASAQQRLFSAVKH-LKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRI 365
F+L+ I++ + ++ + ++ + + D + + E+ R P+ V R
Sbjct: 317 FMLFLIAKHPNVEEAIIKEIQTVIGERDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRK 376
Query: 366 LNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLP 425
++ V+ GY V GT + N ++FP P++F E + + P P
Sbjct: 377 ALEDDVIDGYPVKKGTN-IILNIGRMHRLEFFPKPNEFTLENFAKNVP------YRYFQP 429
Query: 426 FGHGPRTCIARRSAEQNLQVLIMKTL 451
FG GPR C + A ++ +++ L
Sbjct: 430 FGFGPRGCAGKYIAMVMMKAILVTLL 455
Score = 54.3 bits (131), Expect = 6e-08
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 465 YFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKI 519
+FP P++F E + + P PFG GPR C + A ++ +++ +
Sbjct: 406 FFPKPNEFTLENFAKNVP------YRYFQPFGFGPRGCAGKYIAMVMMKAILVTL 454
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 171 bits (435), Expect = 9e-48
Identities = 78/422 (18%), Positives = 146/422 (34%), Gaps = 43/422 (10%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPED 79
+PL+G + D L + + + R +G +V+ ++ ++ V PE
Sbjct: 26 VAGGGVPLLGHGWRLAR-------DPLAF--MSQLRDHGDVVRIKL-GPKTVYAVTNPEL 75
Query: 80 IETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSEIKH 139
+ H+A + + G+ NG R R +Q F +
Sbjct: 76 TGALAL------NPDYHIAGPLWESLEG-LLGKEGVATANGPLHRRQRRTIQPAFR-LDA 127
Query: 140 VRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQISS 199
+ ++ ++ + E R T D E R+ + + + A+++
Sbjct: 128 IPAYGPIMEEEAHALTE-RWQPGKTV-DATSESFRVAVRVAARCLLRGQYMDERAERL-- 183
Query: 200 QSLSSKLIEAAYTANSCVLKTDNGP-QLWRKFDTPLYKKLKMAHGFIEEQALKFISQKSS 258
A T + + P + P ++ A + + I+++
Sbjct: 184 -------CVALATVFRGMYRRMVVPLGPLYRLPLPANRRFNDALADLHLLVDEIIAER-- 234
Query: 259 RVASVQTNQATSLL-----ENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHIS 313
R + + + + L +N + ++I V IL G +T A T +LL ++
Sbjct: 235 RASGQKPDDLLTALLEAKDDN---GDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALA 291
Query: 314 RSASAQQRLFSAVK-HLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVL 372
R+ V+ V D + V+ E RL P + R E+ L
Sbjct: 292 DHPEHADRIRDEVEAVTGGRPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESEL 351
Query: 373 SGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRT 432
GY +PAG + R + + +F P+RWL E A V Y + PF G R
Sbjct: 352 GGYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAAN--VPKYAMKPFSAGKRK 409
Query: 433 CI 434
C
Sbjct: 410 CP 411
Score = 53.5 bits (129), Expect = 1e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
R + + +F P+RWL + A V Y + PF G R C
Sbjct: 371 RDPKSYDDNLEFDPDRWLPERAAN--VPKYAMKPFSAGKRKCP 411
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 163 bits (415), Expect = 4e-45
Identities = 78/437 (17%), Positives = 156/437 (35%), Gaps = 59/437 (13%)
Query: 9 TTSTVKSFDQIPGPKSLPLIGTLHKYL---PFIGEYQFDRLHWNGLKKYRKYGPLVKEEI 65
+ + + S PG LP +G +L F K+ +++GP+ K +
Sbjct: 4 SPTNLNSLPIPPGDFGLPWLGETLNFLNDGDFG------------KKRQQQFGPIFKTRL 51
Query: 66 VPGVSLVWVFTPEDIETVYRCEGR-----YPERRSHLALEKYRLDRPEVYSTGGLLPTNG 120
G +++++ ++ E +P L L G
Sbjct: 52 -FGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGPN------------ALATQMG 98
Query: 121 KEWCRIRSELQKGFSEIKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIM 180
+ R L + F + + S+L ++ ++ ++E + G+ + P+L R+ ++
Sbjct: 99 EIHRSRRKILYQAFL-PRTLDSYLPKMDGIVQGYLE-QWGKANEV-IWYPQLRRMTFDVA 155
Query: 181 CLVAFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKM 240
+ +++ + +L T + L L+ K +
Sbjct: 156 ATLFMGEKVSQ-----------NPQLFPWFETYIQGLF------SLPIPLPNTLFGKSQR 198
Query: 241 AHGFIEEQALKFISQKSSRVASVQTNQATSLL--ENYLANPKLSRRDIVGMSVDILLAGI 298
A + + K I + + A +L N LS ++ + +L AG
Sbjct: 199 ARALLLAELEKIIKAR--QQQPPSEEDALGILLAARDDNNQPLSLPELKDQILLLLFAGH 256
Query: 299 DTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGS-VTSADYDGCAYAKAVLKETFRLSP 357
+T + + + ++R+ L+ +T+ Y VL+E RL P
Sbjct: 257 ETLTSALSSFCLLLGQHSDIRERVRQEQNKLQLSQELTAETLKKMPYLDQVLQEVLRLIP 316
Query: 358 ISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQC 417
G R L ++ G+H P G L Q + +P P++F PER+ + A
Sbjct: 317 PVGGGFRELIQDCQFQGFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATH- 375
Query: 418 VSPYLVLPFGHGPRTCI 434
P+ +PFG G R C+
Sbjct: 376 NPPFAHVPFGGGLRECL 392
Score = 56.1 bits (136), Expect = 1e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+P P++F PER+ A P+ +PFG G R C+
Sbjct: 351 ADPDLYPDPEKFDPERFTPDGSATH-NPPFAHVPFGGGLRECL 392
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 162 bits (412), Expect = 1e-44
Identities = 65/425 (15%), Positives = 141/425 (33%), Gaps = 45/425 (10%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPED 79
P ++P++G + ++ + R+ + + G + V P +
Sbjct: 7 VYPVTVPILGHIIQFGKSPLGF-MQEC-------KRQLKSGIFTINIVGKRVTIVGDPHE 58
Query: 80 IETVYRCEGRYPERRSHLALEK-YRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSEIK 138
+ R L+ + Y P V+ G + L + + I
Sbjct: 59 HSRFFL------PRNEVLSPREVYSFMVP-VFGEGVAYAAPYPRMREQLNFLAEELT-IA 110
Query: 139 HVRSHLDL-VNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQI 197
++ + ++V + L + S + + C F + +
Sbjct: 111 KFQNFVPAIQHEVRKFMAANWDKDEGEI-NLLEDCSTMIINTACQCLF--------GEDL 161
Query: 198 SSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQKS 257
+ + + + S ++ + K P + A +++ + I +
Sbjct: 162 RKRLDARRFAQLLAKMESSLIPAAVFLPILLKLPLPQSARCHEARTELQKILSEIIIAR- 220
Query: 258 SRVASVQTNQATS-----LLE-NYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYH 311
+ V + +TS LL Y +S ++ GM V + AG TS+ TT + + H
Sbjct: 221 -KEEEVNKDSSTSDLLSGLLSAVYRDGTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLH 279
Query: 312 ISR--SASAQQRLFSAVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKE 369
+ + + L ++ + D +A+ +E+ R P + + R + +
Sbjct: 280 LMHPANVKHLEALRKEIEEFPAQLNYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMAD 339
Query: 370 TVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHG 429
+ Y VP G + +S + FP P ++ PER + + FG G
Sbjct: 340 VKVGSYVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERDEK--------VEGAFIGFGAG 391
Query: 430 PRTCI 434
CI
Sbjct: 392 VHKCI 396
Score = 49.2 bits (118), Expect = 2e-06
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+ FP P ++ PER + + FG G CI
Sbjct: 362 HDEEAFPEPRRWDPERDEK--------VEGAFIGFGAGVHKCI 396
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 162 bits (412), Expect = 1e-44
Identities = 79/423 (18%), Positives = 164/423 (38%), Gaps = 36/423 (8%)
Query: 20 PGPKSLPLIGTLHKYLPFIG---EYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFT 76
G KS P I +PF+G + + + Y KYGP+ + G + ++
Sbjct: 8 AGVKSPPYIF---SPIPFLGHAIAFGKSPIEF-LENAYEKYGPVFSF-TMVGKTFTYLLG 62
Query: 77 PEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSE 136
+ ++ + RL P V+ G + + L+ G +
Sbjct: 63 SDAAALLFNSKNEDLNAEDVY----SRLTTP-VFGKGVAYDVPNPVFLEQKKMLKSGLN- 116
Query: 137 IKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQ 196
I H + H+ ++ + E+ E G+ + LS L + K + S ++
Sbjct: 117 IAHFKQHVSIIEKETKEYFE-SWGESGEK-NVFEALSELIILTASHCLHGKEIRSQLNEK 174
Query: 197 ISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQK 256
++ ++ ++ + +L +R+ D + + + I ++
Sbjct: 175 VAQ---LYADLDGGFSHAAWLLPGWLPLPSFRRRD----RAHREIKDIFYKA----IQKR 223
Query: 257 SSRVASVQTNQATSLLEN--YLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISR 314
R + + + L + Y L+ ++ GM + +LLAG TS+ T+ ++ + ++R
Sbjct: 224 --RQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLAR 281
Query: 315 SASAQQRLFSAVKHLKRGS---VTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETV 371
+ Q++ + K + + +T +KET RL P + + R+
Sbjct: 282 DKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQT 341
Query: 372 LSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPR 431
++GY +P G V+ RL + F P+R+L+++PA + +PFG G
Sbjct: 342 VAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPAS--GEKFAYVPFGAGRH 399
Query: 432 TCI 434
CI
Sbjct: 400 RCI 402
Score = 52.3 bits (126), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
RL + F P+R+L+ +PA + +PFG G CI
Sbjct: 362 RLKDSWVERLDFNPDRYLQDNPAS--GEKFAYVPFGAGRHRCI 402
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 153 bits (389), Expect = 3e-41
Identities = 84/451 (18%), Positives = 161/451 (35%), Gaps = 47/451 (10%)
Query: 15 SFDQIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWV 74
+ ++P PK+ + L ++ + G + K E PG ++
Sbjct: 1 TIKEMPQPKTFGELKNLPLLNTDKPVQALMKIA-------DELGEIFKFEA-PGRVTRYL 52
Query: 75 FTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTG-GLLP--TNGKEWCRIRSELQ 131
+ I+ E R+ + S + R G GL T+ K W + + L
Sbjct: 53 SSQRLIKEACD-ESRFDKNLSQA----LKFVRDFA---GDGLFTSWTHEKNWKKAHNILL 104
Query: 132 KGFSEIKHVRSHLDLVNQVMDEFIE--LRIGQRATFQDFLPELSRLYLEIMCLVAFEKRL 189
FS + ++ + ++ + + ++ R+ + +++RL L+ + L F R
Sbjct: 105 PSFS-QQAMKGYHAMMVDIAVQLVQKWERLNADEHI-EVPEDMTRLTLDTIGLCGFNYRF 162
Query: 190 HSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQA 249
+SF DQ I + A + ++ + + +
Sbjct: 163 NSFYRDQPHP------FITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMNDLV 216
Query: 250 LKFISQKSSRVASVQTNQATSLLENYLA------NPKLSRRDIVGMSVDILLAGIDTSAY 303
K I+ R AS + + LL + L L +I + L+AG +T++
Sbjct: 217 DKIIAD---RKASGEQSD--DLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSG 271
Query: 304 TTCFLLYHISRSASAQQRLFSAVKH-LKRGSVTSADYDGCAYAKAVLKETFRLSPISVGV 362
F LY + ++ Q+ L + Y VL E RL P +
Sbjct: 272 LLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAF 331
Query: 363 GRILNKETVLSG-YHVPAGTLAVTQNQVSCRLSQYFPG-PDQFIPERWLREDPAKQCVSP 420
++TVL G Y + G + R + ++F PER+ E+P+
Sbjct: 332 SLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF--ENPSAI--PQ 387
Query: 421 YLVLPFGHGPRTCIARRSAEQNLQVLIMKTL 451
+ PFG+G R CI ++ A +++ L
Sbjct: 388 HAFKPFGNGQRACIGQQFALHEATLVLGMML 418
Score = 44.9 bits (107), Expect = 5e-05
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 461 RLSQYFPS-PDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKI 519
R + ++F PER+ + + PFG+G R CI ++ A +++ +
Sbjct: 362 RDKTIWGDDVEEFRPERFENPSA----IPQHAFKPFGNGQRACIGQQFALHEATLVLGMM 417
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 152 bits (386), Expect = 1e-40
Identities = 60/469 (12%), Positives = 136/469 (28%), Gaps = 62/469 (13%)
Query: 9 TTSTVKSFDQIPGPK-SLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVP 67
T+S + + P +P +G ++ +F R RK+G + +
Sbjct: 5 TSSRRRQTGEPPLENGLIPYLGCALQFGANP--LEFLR------ANQRKHGHVFTC-KLM 55
Query: 68 GVSLVWVFTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIR 127
G + ++ P V + + + + + + P +G I
Sbjct: 56 GKYVHFITNPLSYHKVLC------HGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENIN 109
Query: 128 SELQKGFSEIKHVRSHLDLVNQVMDEFIELRIGQRA-----TFQDFLPELSRLYLEIMCL 182
K + S + + + + + + + + R+ E L
Sbjct: 110 DTFIKTLQ-GHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYL 168
Query: 183 VAFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNG-PQLWRKFDTPLYKKLKMA 241
F + L + D P L +++ A
Sbjct: 169 TIFGRDLTRRDTQ-----------KAHILNNLDNFKQFDKVFPALVAGLPIHMFRTAHNA 217
Query: 242 HGFIEEQALKFISQKSSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTS 301
+ E + + S+ + + + + +L A +
Sbjct: 218 REKLAE---SLRHENLQKRESISEL-ISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANT 273
Query: 302 AYTTCFLLYHISRSASAQQRL------------FSAVKHLKRGSVTSADYDGCAYAKAVL 349
T + L+ + R+ A + ++ A+ + +++
Sbjct: 274 IPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSII 333
Query: 350 KETFRLSPISVGVGRILNKETVLS----GYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIP 405
KE+ RLS S+ + R ++ L Y++ + Q+ + +P P F
Sbjct: 334 KESLRLSSASLNI-RTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKY 392
Query: 406 ERWLREDP-------AKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 447
+R+L E+ Y +PFG G C R A ++ +
Sbjct: 393 DRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFL 441
Score = 52.8 bits (127), Expect = 2e-07
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 461 RLSQYFPSPDQFIPERWLRKDP-------AKQCVSPYLVLPFGHGPRTCIARRSAEQNLQ 513
+ +P P F +R+L ++ Y +PFG G C R A ++
Sbjct: 379 LDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIK 438
Query: 514 VLI 516
+
Sbjct: 439 QFL 441
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 140 bits (355), Expect = 1e-36
Identities = 84/407 (20%), Positives = 164/407 (40%), Gaps = 28/407 (6%)
Query: 54 YRKYGPLVKEEIVPGVSLVWVFTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTG 113
+KYGP+V+ + + V V +PE ++ + + + AL+ +R ++ G
Sbjct: 20 AKKYGPVVRVNVFH-KTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGER--LFGQG 76
Query: 114 GLLPTNGKEWCRIRSELQKGFSEIKHVRSHLDLVNQVMDEFIELRIGQRATFQ---DFLP 170
+ N + W + R + FS + S ++ N+ ++ +E + +A Q
Sbjct: 77 LVSECNYERWHKQRRVIDLAFS-RSSLVSLMETFNEKAEQLVE-ILEAKADGQTPVSMQD 134
Query: 171 ELSRLYLEIMCLVAFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKF 230
L+ ++I+ AF Q L +A + + N +
Sbjct: 135 MLTYTAMDILAKAAFGMETSMLLGAQ-------KPLSQAVKLMLEGITASRNTLAKFLPG 187
Query: 231 DTPLYKKLKMAHGFIEEQALKFISQKSSRVASVQTNQATS--LLENYLA--NPKLSRRDI 286
++++ + F+ + ++ + R +++ + +L L +
Sbjct: 188 KRKQLREVRESIRFLRQVGRDWVQR---RREALKRGEEVPADILTQILKAEEGAQDDEGL 244
Query: 287 VGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHL--KRGSVTSADYDGCAY 344
+ V +AG +TSA F + +SR RL + V + + + D Y
Sbjct: 245 LDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQY 304
Query: 345 AKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFI 404
VLKE+ RL P + G R+L +ET++ G VP T + V R+ YF P F
Sbjct: 305 LSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFN 364
Query: 405 PERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKTL 451
P+R+ P + PF G R+CI ++ A+ ++V++ K L
Sbjct: 365 PDRFGPGAPK----PRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLL 407
Score = 50.3 bits (121), Expect = 9e-07
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKI 519
R+ YF P F P+R+ + PF G R+CI ++ A+ ++V++ K+
Sbjct: 352 RMDTYFEDPLTFNPDRFG----PGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKL 406
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 140 bits (355), Expect = 2e-36
Identities = 57/457 (12%), Positives = 131/457 (28%), Gaps = 53/457 (11%)
Query: 20 PGPKS-LPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPE 78
P +P +G + F + K+G + + G + + P
Sbjct: 21 PLDLGSIPWLGYALDFGK--DAASFLT------RMKEKHGDIFTILV-GGRYVTVLLDPH 71
Query: 79 DIETVYRCEGRYPERRSHLALEKYRLD-RPEVYSTGGLLPTNGKEWCRIRSELQKGFSEI 137
+ V E R+ L Y + ++ + E R++ L +
Sbjct: 72 SYDAVVW------EPRTRLDFHAYAIFLMERIFDVQLPHYSPSDEKARMKLTLLHRELQ- 124
Query: 138 KHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQI 197
+ ++ V+ L L L + T +
Sbjct: 125 ALTEAMYTNLHAVLLGDATEAGSGWHEM-GLLDFSYSFLLRAGYLTLYGIEALPRTHESQ 183
Query: 198 SSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKK-LKMAHGFIEEQALKFISQK 256
+ + S + + +L P+L R + K + + + +
Sbjct: 184 AQDRVHSADVFHTFRQLDRLL-----PKLARGSLSVGDKDHMCSVKSRLWKLLSPARLAR 238
Query: 257 SSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSA 316
+ + +L +S V L A +LL + ++
Sbjct: 239 RAHRSKW-----LESYLLHLEEMGVSEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNP 293
Query: 317 SAQQRL---------FSAVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILN 367
A + + + ++ D +VL E+ RL+ + R +
Sbjct: 294 EALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPF-ITREVV 352
Query: 368 KETVLS-----GYHVPAGTLAVTQNQVSC-RLSQYFPGPDQFIPERWLREDPAKQ----- 416
+ + +++ G + +S R + + P+ F R+L D +++
Sbjct: 353 VDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYK 412
Query: 417 --CVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKTL 451
+P+G G C+ R A +++ + L
Sbjct: 413 DGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVL 449
Score = 54.4 bits (131), Expect = 4e-08
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQ-------CVSPYLVLPFGHGPRTCIARRSAEQNLQ 513
R + + P+ F R+L D +++ +P+G G C+ R A +++
Sbjct: 383 RDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIK 442
Query: 514 VLIMKI 519
+ +
Sbjct: 443 QFVFLV 448
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 135 bits (342), Expect = 3e-35
Identities = 56/416 (13%), Positives = 113/416 (27%), Gaps = 76/416 (18%)
Query: 35 LPFIGE---YQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPEDIETVYRCEGRYP 91
E D + ++ ++ G E + + E Y
Sbjct: 7 TKGPDETLSLLADPYRF-ISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDTTRFE- 64
Query: 92 ERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSEIKHVRSHLDLVNQVM 151
R + + + + GG+ +G+ + + + VR+ L
Sbjct: 65 -REGAMPVAIQKT----LLGQGGVQGLDGETHRHRKQMFMGLMTP-ERVRALAQLFEAEW 118
Query: 152 DEFIELRIGQRATFQDFLPELSRLYLEIMCLVAF--------EKRLHSFTADQISSQSLS 203
+ ++ F EL +C A R A
Sbjct: 119 RRAVP-GWTRKGEI-VFYDELHEPLTRAVCAWAGVPLPDDEAGNRAGELRA--------- 167
Query: 204 SKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQKSSRVASV 263
L +AA +A P+ ++A ++ A + I +
Sbjct: 168 --LFDAAGSA---------SPRHLWS---------RLARRRVDAWAKRIIEGIRAGSIGS 207
Query: 264 QTNQATSLLENYL-ANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRL 322
+ A + + + L + + + +L A F+ + + + + L
Sbjct: 208 GSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCSGIRAAL 267
Query: 323 FSAVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTL 382
V+ YA+ ++E R P V +++ G P G
Sbjct: 268 ---VQQPD-------------YAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQ 311
Query: 383 AVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGP----RTCI 434
V S + + P +F PER+ D + +P G G C
Sbjct: 312 VVLDLYGSNHDAATWADPQEFRPERFRAWDE-----DSFNFIPQGGGDHYLGHRCP 362
Score = 45.1 bits (107), Expect = 3e-05
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGP----RTCI 503
+ + P +F PER+ D + +P G G C
Sbjct: 321 HDAATWADPQEFRPERFRAWDE-----DSFNFIPQGGGDHYLGHRCP 362
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 135 bits (342), Expect = 3e-35
Identities = 48/444 (10%), Positives = 124/444 (27%), Gaps = 82/444 (18%)
Query: 17 DQIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFT 76
+QIP + L + + + +Y + + + G + + +
Sbjct: 3 EQIPH---DKSLDNSLTLL-------KEGYLF-IKNRTERYNSDLFQARLLGKNFICMTG 51
Query: 77 PEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSE 136
E + Y + + ++K ++ + +G + +
Sbjct: 52 AEAAKVFYDTDRFQRQNALPKRVQK------SLFGVNAIQGMDGSAHIHRKMLFLSLMTP 105
Query: 137 IKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAF--------EKR 188
H + +L+ + + R + E + + C A ++R
Sbjct: 106 -PHQKRLAELMTEEWKAAVT-RWEKADEV-VLFEEAKEILCRVACYWAGVPLKETEVKER 162
Query: 189 LHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQ 248
F +++A P + K + A EE
Sbjct: 163 ADDFID-----------MVDAFGAV------------------GPRHWKGRRARPRAEEW 193
Query: 249 ALKFISQ-KSSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCF 307
I ++ + + + + + + + + +L I +Y F
Sbjct: 194 IEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRPIVAISYFLVF 253
Query: 308 LLYHISRSASAQQRLFSAVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILN 367
+ ++ L + ++E R P +G ++
Sbjct: 254 SALALHEHPKYKEWL---------------RSGNSREREMFVQEVRRYYPFGPFLGALVK 298
Query: 368 KETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFG 427
K+ V + GT + + + + PD+F PER+ + + + ++P G
Sbjct: 299 KDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAEREE-----NLFDMIPQG 353
Query: 428 HGP----RTCIARRSAEQNLQVLI 447
G C + ++ +
Sbjct: 354 GGHAEKGHRCPGEGITIEVMKASL 377
Score = 46.2 bits (110), Expect = 2e-05
Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGP----RTCIARRSAEQNLQVLI 516
+ + PD+F PER+ ++ + + ++P G G C + ++ +
Sbjct: 323 HDPRLWDHPDEFRPERFAEREE-----NLFDMIPQGGGHAEKGHRCPGEGITIEVMKASL 377
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 126 bits (320), Expect = 2e-32
Identities = 88/411 (21%), Positives = 139/411 (33%), Gaps = 86/411 (20%)
Query: 31 LHKYLPFIGEYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVWVFTPEDIETVYRCEGRY 90
L + P++ + Q D L L + + P + + P L +F PE +E EG
Sbjct: 6 LREAWPYLKDLQQDPLAV--LLAWGRAHPRLFLPL-PRFPLALIFDPEGVEGALLAEGTT 62
Query: 91 PERRSHLALEKYRLDRPEVYSTG-GLLPTNGKEWCRIRSELQKGFSEIKHVRSHLDLVNQ 149
+ AL + TG GLL G+ W R L+ F K+VR + + + +
Sbjct: 63 KATFQYRALSRL---------TGRGLLTDWGESWKEARKALKDPFL-PKNVRGYREAMEE 112
Query: 150 VMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQISSQSLSSKLIEA 209
F G+ D E+ L L ++ F + LS L E
Sbjct: 113 EARAFFGEWRGEER---DLDHEMLALSLRLLGRALF-------------GKPLSPSLAEH 156
Query: 210 AYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQKSSRVASVQTNQAT 269
A A ++ P D + + G + +A I
Sbjct: 157 ALKALDRIMAQTRSP--LALLDLAAEARFRKDRGALYREAEALIVHPPLS---------- 204
Query: 270 SLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHL 329
L R + +V +L+AG +T A + +S Q+R+ + +
Sbjct: 205 ----------HLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEE-- 252
Query: 330 KRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQV 389
+ A +E RL P + + R L + +L +P GT V
Sbjct: 253 ---AAL-----------AAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLV----- 293
Query: 390 SCRLSQY------FPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
LS Y FP + F PER+L E PFG G R C+
Sbjct: 294 ---LSPYVTQRLHFPDGEAFRPERFLEERGT----PSGRYFPFGLGQRLCL 337
Score = 48.0 bits (115), Expect = 4e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 465 YFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+FP + F PER+L ++ PFG G R C+
Sbjct: 303 HFPDGEAFRPERFL----EERGTPSGRYFPFGLGQRLCL 337
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 119 bits (299), Expect = 4e-29
Identities = 70/473 (14%), Positives = 135/473 (28%), Gaps = 79/473 (16%)
Query: 19 IPGPKSLPLIGTL---HKYLPFIGEYQFDRLHWNGLKKYRKYGPLV-KEEIVPGVSLVWV 74
IPG LP++G + Y G +F + + RKY V + + PG ++
Sbjct: 30 IPGNYGLPIVGPIKDRWDYFYDQGAEEFFK------SRIRKYNSTVYRVNMPPGA---FI 80
Query: 75 FTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYS---TGGLLP----TNGKEWCRIR 127
+ + + +K L + S TGG +
Sbjct: 81 AENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGYRILSYLDPSEPKHEKL 140
Query: 128 SELQKGFSEIKHVRSHL-DLVNQVMDEF---IELRIGQRATFQDFLPELSRLYLEIMCLV 183
L F +K R+ + E +E + + DF +
Sbjct: 141 KNLL--FFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKA-DFGGSSDGTAFNFLARA 197
Query: 184 AFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHG 243
+ + ++ ++ L L +
Sbjct: 198 FYGTNPADTKLKADAPGLITKWVL----------------FNLHPLLSIGLPR------- 234
Query: 244 FIEEQALKFISQKSSRVASVQ---TNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDT 300
IEE + S + V S L + ++L A
Sbjct: 235 VIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVEADKLGISREEATHNLLFATCFN 294
Query: 301 SAYTTCFLLYHISRSASA-----QQRLFS---AVKHLKRGSVTSADYDGCAYAKAVLKET 352
+ L ++ + RL +V G +T + K+V+ E
Sbjct: 295 TWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYEC 354
Query: 353 FRLSPISVGVGRILNKETVL----SGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERW 408
R P K+ V+ + + V AG + ++ R + F D+F+PER+
Sbjct: 355 LRFEPPVTAQYGRAKKDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERF 414
Query: 409 LREDPAKQCVSPYLVLPFG-------HGPRTCIARRSAEQNLQVLIMKTLAVT 454
+ E+ K +++ G G + C + VL+ + +
Sbjct: 415 VGEEGEKL--LRHVLWSNGPETETPTVGNKQCAGKDFV-----VLVARLFVIE 460
Score = 50.7 bits (121), Expect = 7e-07
Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFG-------HGPRTCIARRSAEQNLQ 513
R + F D+F+PER++ + + +++ G G + C + +
Sbjct: 398 RDPKIFDRADEFVPERFV--GEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVAR 455
Query: 514 VLIMKI 519
+ +++I
Sbjct: 456 LFVIEI 461
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 110 bits (276), Expect = 5e-26
Identities = 54/448 (12%), Positives = 132/448 (29%), Gaps = 62/448 (13%)
Query: 20 PGPK-SLPLIGTLHKY--LPFIGEYQFDRLHWNGLKKYRKYGPL--VKEEIVPGVSLVWV 74
P K +P +G ++ +F L + K+G + V+ G+ + +
Sbjct: 21 PLDKGMIPWLGHALEFGKDA----AKF--LT----RMKEKHGDIFTVR---AAGLYITVL 67
Query: 75 FTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGL-LPTNGKEWCRIRSELQKG 133
+ V +L++ + + + LP++ E + R+
Sbjct: 68 LDSNCYDAVLS---------DVASLDQTSYAQVLMKRIFNMILPSHNPESEKKRA----- 113
Query: 134 FSEIKHVRS-HLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSF 192
H + L ++ M + L + + + F+ +
Sbjct: 114 ---EMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGYLTV 170
Query: 193 TADQISSQSLSSKLIEAAYTANSCVLKTDNGPQL-WRKFDTPLYKKLKMAHGFIEEQALK 251
+ ++ + +++ E + P+L + + A + +
Sbjct: 171 FGAENNNSAALTQIYEEFRRFD------KLLPKLARTTVNKEEKQIASAAREKLWKWLTP 224
Query: 252 FISQKSSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYH 311
+ R S L + + + L + +++ +
Sbjct: 225 SGLDRKPREQSW-----LGSYVKQLQDEGIDAEMQRRAMLLQLWVTQGNAGPAAFWVMGY 279
Query: 312 ISRSASAQQRLFSAVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETV 371
+ A + + ++ K +VL ET RL+ ++ + + +
Sbjct: 280 LLTHPEALRAVREEIQGGKH-LRLEERQKNTPVFDSVLWETLRLTAAALITRDVTQDKKI 338
Query: 372 LS----GYHVPAGTLAVTQNQVS-CRLSQYFPGPDQFIPERWLREDPAKQ-------CVS 419
YH+ G +S Q P+ F +R+L D ++
Sbjct: 339 CLSNGQEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARV 398
Query: 420 PYLVLPFGHGPRTCIARRSAEQNLQVLI 447
Y +P+G C R A ++ L+
Sbjct: 399 KYPSVPWGTEDNLCPGRHFAVHAIKELV 426
Score = 47.3 bits (113), Expect = 8e-06
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 461 RLSQYFPSPDQFIPERWLRKDPAKQ-------CVSPYLVLPFGHGPRTCIARRSAEQNLQ 513
Q P+ F +R+L D ++ Y +P+G C R A ++
Sbjct: 364 MDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRHFAVHAIK 423
Query: 514 VLI 516
L+
Sbjct: 424 ELV 426
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 109 bits (274), Expect = 6e-26
Identities = 64/473 (13%), Positives = 136/473 (28%), Gaps = 76/473 (16%)
Query: 18 QIPGPKSLPLIGTL---HKYLPFIG---EYQFDRLHWNGLKKYRKYGPLV-KEEIVPGVS 70
+IPG +P + +Y G EY R +KY V + + PG
Sbjct: 10 EIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSR--------MQKYQSTVFRANMPPGP- 60
Query: 71 LVWVFTPEDIETVYRCEGR-YPERRSHLALEKY---------RLDRPEVYSTGGLLPTNG 120
F + + + + + +P +EK Y L +
Sbjct: 61 ----FVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSE 116
Query: 121 KEWCRIRSELQKGFSEI-KHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEI 179
++++ L V + + E +E + + F +
Sbjct: 117 PRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKA-AFNDVGEQAAFRF 175
Query: 180 MCLVAFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLK 239
+ F +KL +A T ++ + L D L L+
Sbjct: 176 LGRAYFNS------------NPEETKLGTSAPT----LISSWVLFNLAPTLDLGLPWFLQ 219
Query: 240 MAHGFIEEQALKFISQKSSRVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGID 299
I +++ + AT ++E + + +
Sbjct: 220 EPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQAEKLGVPKDEAVHNILFAVCFNTFG 279
Query: 300 TSAYTTCFLLYHISRS-ASAQQRLF----SAVKHLKRGSVTSADYDGCAYAKAVLKETFR 354
L I + + +L A+K G+VT + K+V+ E+ R
Sbjct: 280 GVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLR 339
Query: 355 LSPISVGVGRILNKETVLSG----YHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLR 410
+ P + + V G + + + + F P++++P+R++
Sbjct: 340 IEPPVPPQYGKAKSNFTIESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVG 399
Query: 411 EDPAKQCVSPYLVLPFGHGP---------RTCIARRSAEQNLQVLIMKTLAVT 454
+ A + + +GP + C + VLI + +
Sbjct: 400 DGEA-----LLKYVWWSNGPETESPTVENKQCAGKDFV-----VLITRLFVIE 442
Score = 46.8 bits (111), Expect = 1e-05
Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGP---------RTCIARRSAEQNLQV 514
+ F P++++P+R++ A + + +GP + C + V
Sbjct: 384 KVFDRPEEYVPDRFVGDGEA-----LLKYVWWSNGPETESPTVENKQCAGKDFV-----V 433
Query: 515 LIMKI 519
LI ++
Sbjct: 434 LITRL 438
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 102 bits (257), Expect = 2e-23
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 18/183 (9%)
Query: 278 NPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHL--KRGSVT 335
+ LS ++V S+ + AG +T++ F++Y ++ QQ+L + + + T
Sbjct: 265 HKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPT 324
Query: 336 SADYDGCA---YAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSC- 391
YD Y V+ ET RL PI++ + R+ K+ ++G +P G + + +
Sbjct: 325 ---YDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVM----IPSY 377
Query: 392 ---RLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIM 448
R +Y+ P++F+PER+ ++ K + PY+ PFG GPR CI R A N+++ ++
Sbjct: 378 ALHRDPKYWTEPEKFLPERFSKK--NKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALI 435
Query: 449 KTL 451
+ L
Sbjct: 436 RVL 438
Score = 59.9 bits (146), Expect = 9e-10
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKI 519
+Y+ P++F+PER+ K + PY+ PFG GPR CI R A N+++ ++++
Sbjct: 384 KYWTEPEKFLPERFS--KKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRV 437
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 79.3 bits (195), Expect = 1e-15
Identities = 78/511 (15%), Positives = 152/511 (29%), Gaps = 204/511 (39%)
Query: 106 RPEVYSTGGL-----LPTNGKEWCRIRSELQKGFSEIKHVRSHLDLVNQVMDEF------ 154
RP S G L +PT + S+LQ+ F++I + + + F
Sbjct: 7 RPLTLSHGSLEHVLLVPTA--SFFIA-SQLQEQFNKI---------LPEPTEGFAADDEP 54
Query: 155 ---IELRIGQRATFQDFL-----PELSRLYLEIM--CLVAFEKR------LHSFTA---- 194
EL F ++ P + +++ CL FE +H+ A
Sbjct: 55 TTPAELV----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 195 DQISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFIS 254
+ ++ + +LI+ TA + + ++ L++ +
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKS-----NSALFRA---------------VG 150
Query: 255 QKSSRVASV---QTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYH 311
+ ++++ ++ Q N ++Y +L RD+ ++ I SA T L
Sbjct: 151 EGNAQLVAIFGGQGN-----TDDYF--EEL--RDLYQTYHVLVGDLIKFSAET----LSE 197
Query: 312 ISRSASAQQRLFSAVKHLKR-----GSVTSADYDGCAYAKAVLKETFRLSPISVGVGRIL 366
+ R+ +++F+ ++ + DY PIS
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY-------------LLSIPIS------- 237
Query: 367 NKETVLSGYHVPA-GTLAVTQNQVSCRLSQYFPGPDQFIPER------------------ 407
P G + + V+ +L + PG +
Sbjct: 238 ----------CPLIGVIQLAHYVVTAKLLGFTPG--ELRSYLKGATGHSQGLVTAVAIAE 285
Query: 408 ---WLREDPAKQCVSPYLVLPFGHG-------PRTCIARRSAEQNLQVLI-----MKTLA 452
W + V + + F G P T + E +L+ M L+
Sbjct: 286 TDSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LS 340
Query: 453 V---TQNQVSCRLSQ---YFP-----------SPDQFI----PE------RWLRKDPAK- 484
+ TQ QV +++ + P + P+ LRK A
Sbjct: 341 ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 485 ---QCVSP-----------YLVL--PFGHGP 499
Q P +L + PF H
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPF-HSH 430
Score = 49.3 bits (117), Expect = 3e-06
Identities = 69/390 (17%), Positives = 116/390 (29%), Gaps = 140/390 (35%)
Query: 3 KRLLCHTTSTVKSFDQIPGPKSLPLIGTLHK--------YL-------PFIGEYQFDRLH 47
L+ T K F + L ++ L YL P IG Q H
Sbjct: 196 SELIRTTLDAEKVF-----TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL--AH 248
Query: 48 WNGLKKYRKYGPLVKEEIVPGVS-----LV----------WV-FTPEDIETV-------Y 84
+ K + P + G + LV W F + +
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 85 RCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPT-----NGKEWCRIRSELQKGFSEIKH 139
RC YP ++ + L+ E G +P+ + + ++Q +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNE----G--VPSPMLSISNLT----QEQVQD---YVNK 355
Query: 140 VRSHLDLVNQVMDEFIELRIGQRATFQDFL---PELSRLYLEIMCLVAFEKRLHSFTA-- 194
SHL QV I L G + + P S L L A
Sbjct: 356 TNSHLPAGKQV---EISLVNGAKN----LVVSGPPQS--------LYGLNLTLRKAKAPS 400
Query: 195 --DQ-----------ISSQSL-------SSKLIEAA-------------YTANSC---VL 218
DQ S++ L S L+ A+ + A V
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 219 KTDNGPQLWRKFDTPLYKKLKMAHGFIEEQALKFISQKSSRVASVQTNQATSLLE----- 273
T +G L R + +++ I +K+ + Q +AT +L+
Sbjct: 461 DTFDGSDL-RVLSGSISERIVDC---IIRLPVKW-------ETTTQF-KATHILDFGPGG 508
Query: 274 -NYLANPKLSRRDIVGMSVDILLAG-IDTS 301
+ L L+ R+ G V +++AG +D +
Sbjct: 509 ASGLG--VLTHRNKDGTGVRVIVAGTLDIN 536
Score = 45.8 bits (108), Expect = 3e-05
Identities = 81/489 (16%), Positives = 144/489 (29%), Gaps = 163/489 (33%)
Query: 29 GTLHKYLPFIG-----EYQFDRLHWNGLKKYRKYGPLVKEEIVPGVSLVW--VFTPEDIE 81
G F G +Y F+ L Y+ Y LV + I + + T D E
Sbjct: 152 GNAQLVAIFGGQGNTDDY-FEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 82 TVYRCEG-------RYPERR---SHLA-------------LEKYRLDRPEVYSTGGLLPT 118
V+ +G P +L L Y + G P
Sbjct: 207 KVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV----TAKLLGFTPG 261
Query: 119 NGKEWCRIRSELQKGFSEIKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLE 178
+RS L+ G + H + LV V I + +++ F R +
Sbjct: 262 E------LRSYLK-GAT--GHSQ---GLVTAVA-------IAETDSWESFF-VSVRKAIT 301
Query: 179 IM------CLVAFEKRLHSFTADQISSQSLSSKLIEAAYTANSCVLKTDNG---PQLWRK 229
++ C A+ + SL ++E + +N P
Sbjct: 302 VLFFIGVRCYEAY------------PNTSLPPSILEDS---------LENNEGVP----- 335
Query: 230 FDTPLYKKLKMAH--GFIEEQALKFISQKSSRVASVQTNQ---ATSLLENYLANPKLSRR 284
+P M +EQ +++ +TN A +E L N +
Sbjct: 336 --SP------MLSISNLTQEQVQDYVN---------KTNSHLPAGKQVEISLVN---GAK 375
Query: 285 DIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADYD--GC 342
++V ++G S Y L + Q S + +R S +
Sbjct: 376 NLV-------VSGPPQSLYGLNLTLRKAKAPSGLDQ---SRIPFSERKLKFSNRFLPVAS 425
Query: 343 AY-------AKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGT-LAVTQNQVSCRLS 394
+ A ++ + + +S I + V Y G+ L V +S R+
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDI--QIPV---YDTFDGSDLRVLSGSISERIV 480
Query: 395 QYFPGPDQFI--PERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQ-----VLI 447
D I P +W +L FG G + + + +N V++
Sbjct: 481 ------DCIIRLPVKW----ETTTQFKATHILDFGPGGASGLGVLTH-RNKDGTGVRVIV 529
Query: 448 MKTLAVTQN 456
TL + +
Sbjct: 530 AGTLDINPD 538
Score = 31.2 bits (70), Expect = 1.1
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 69/139 (49%)
Query: 287 VGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLF-SAVKHLK--------------- 330
GM G+D LY S +AQ ++ A H K
Sbjct: 1629 QGM-------GMD---------LY--KTSKAAQD-VWNRADNHFKDTYGFSILDIVINNP 1669
Query: 331 ----------RGSVTSADY---------DGCAYAKAVLKETFRLSPISVGVGRILNKETV 371
+G +Y DG + + KE +N+ +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE--------------INEHST 1715
Query: 372 LSGYHVPAGTLAVTQN-QV 389
+ G L+ TQ Q
Sbjct: 1716 SYTFRSEKGLLSATQFTQP 1734
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 68.0 bits (167), Expect = 2e-12
Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 23/175 (13%)
Query: 273 ENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAV 326
+++ +L ++ DI A DT + + LL + Q R+
Sbjct: 267 DSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDV------QTRVQ--- 317
Query: 327 KHLKR--GS---VTSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAG 380
L + G D Y A L E R S V + T + GYH+P
Sbjct: 318 AELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKD 377
Query: 381 TLAVTQNQVSC-RLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
T+ V NQ S +P P+ F P R+L +D V+ F G R CI
Sbjct: 378 TV-VFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCI 431
Score = 43.0 bits (102), Expect = 2e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+P+P+ F P R+L KD V+ F G R CI
Sbjct: 392 LKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCI 431
Score = 30.6 bits (70), Expect = 1.3
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRK-YGP 59
PGP + PLIG + + + YG
Sbjct: 12 PGPFAWPLIGNAA---------AVGQAAHLSFARLARRYGD 43
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 66.1 bits (162), Expect = 1e-11
Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 281 LSRRDIVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKRGSV 334
+ + IV + DI AG DT + L+Y I Q+ L + + +R
Sbjct: 278 IPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKPEIQ--RKIQKELDTVIGRERR--P 333
Query: 335 TSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSC-R 392
+D Y +A + ETFR S + ++T L+G+++P V NQ
Sbjct: 334 RLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCC-VFVNQWQVNH 392
Query: 393 LSQYFPGPDQFIPERWLRED-PAKQCVSPYLVLPFGHGPRTCI 434
+ + P +F PER+L D A ++ FG G R CI
Sbjct: 393 DPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCI 435
Score = 40.2 bits (95), Expect = 0.001
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 464 QYFPSPDQFIPERWLRKD-PAKQCVSPYLVLPFGHGPRTCI 503
+ + P +F PER+L D A ++ FG G R CI
Sbjct: 395 ELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCI 435
Score = 31.0 bits (71), Expect = 1.1
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 10/41 (24%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRK-YGP 59
P P PL+G + + L + + YG
Sbjct: 19 PEPWGWPLLGHVL---------TLGKNPHLALSRMSQRYGD 50
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 65.3 bits (160), Expect = 2e-11
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 281 LSRRDIVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKR--G 332
S+ +++ ++++AG +T+ + +L+ +I Q ++ K + G
Sbjct: 269 FSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNI------QGQVQ---KEIDLIMG 319
Query: 333 S---VTSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQ 388
+ D Y +AVL E R I +G+ +++ V+ GY +P GT V N
Sbjct: 320 PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTT-VITNL 378
Query: 389 VSCRL-SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
S +Y+ P+ F PER+L D + ++PF G R C+
Sbjct: 379 YSVHFDEKYWRDPEVFHPERFL--DSSGYFAKKEALVPFSLGRRHCL 423
Score = 41.8 bits (99), Expect = 4e-04
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+Y+ P+ F PER+L D + ++PF G R C+
Sbjct: 386 KYWRDPEVFHPERFL--DSSGYFAKKEALVPFSLGRRHCL 423
Score = 27.9 bits (63), Expect = 8.4
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 13/45 (28%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKY----RKYGPL 60
PGP LP IG ++ + YG +
Sbjct: 15 PGPPGLPFIGNIY---------SLAASSELPHVYMRKQSQVYGEI 50
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 63.7 bits (156), Expect = 5e-11
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 281 LSRRDIVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKR--- 331
LS I+ DI AG++T+ + L + + +++L+ + + +
Sbjct: 269 LSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQV------KKKLY---EEIDQNVG 319
Query: 332 --GSVTSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQ 388
+ T +D + +A ++E RL P++ + + N ++ + + V GT + N
Sbjct: 320 FSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVII-NL 378
Query: 389 VSCRL-SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
+ + + PDQF+PER+L + LPFG GPR+CI
Sbjct: 379 WALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCI 425
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+ + PDQF+PER+L + LPFG GPR+CI
Sbjct: 386 KEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCI 425
Score = 31.4 bits (72), Expect = 0.83
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGP 59
SLPL+G LPF+ + ++ L+K KYGP
Sbjct: 11 KSLLSLPLVG----SLPFLPRHGHMHNNFFKLQK--KYGP 44
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 63.3 bits (155), Expect = 6e-11
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 25/162 (15%)
Query: 286 IVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKR--GS---V 334
+ + D+ AG+ T++ T + LL + Q+R+ + + G
Sbjct: 273 LRIVVADLFSAGMVTTSTTLAWGLLLMILHPDV------QRRVQ---QEIDDVIGQVRRP 323
Query: 335 TSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRL 393
D Y AV+ E R I +GV + +++ + G+ +P GT + N S
Sbjct: 324 EMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTT-LITNLSSVLK 382
Query: 394 -SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
+ P +F PE +L D V P LPF G R C+
Sbjct: 383 DEAVWEKPFRFHPEHFL--DAQGHFVKPEAFLPFSAGRRACL 422
Score = 41.0 bits (97), Expect = 8e-04
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+ P +F PE +L D V P LPF G R C+
Sbjct: 385 AVWEKPFRFHPEHFL--DAQGHFVKPEAFLPFSAGRRACL 422
Score = 28.7 bits (65), Expect = 5.9
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPL 60
PGP LP +G L Y FD+L R++G +
Sbjct: 13 PGPLPLPGLGNLLHVDFQNTPYCFDQLR-------RRFGDV 46
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 61.9 bits (151), Expect = 2e-10
Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 40/169 (23%)
Query: 286 IVGMSVDILLAGIDTSAYTTC----FLLYH--------------ISRSASAQQRLFSAVK 327
+ VD+ + G +T+A T FLL+H + AS + +
Sbjct: 280 VHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRA 339
Query: 328 HLKRGSVTSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQ 386
L A + E RL P+ + + + + + GY +P G + +
Sbjct: 340 RL-------------PLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIP- 385
Query: 387 NQVSCRL-SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI 434
N L + P +F P+R+L L FG G R C+
Sbjct: 386 NLQGAHLDETVWEQPHEFRPDRFLEPGANPS------ALAFGCGARVCL 428
Score = 38.0 bits (89), Expect = 0.007
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCI 503
+ P +F P+R+L L FG G R C+
Sbjct: 395 TVWEQPHEFRPDRFLEPGANPS------ALAFGCGARVCL 428
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 60.6 bits (148), Expect = 5e-10
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 344 YAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRL-SQYFPGPD 401
Y AV+ E R + + ++T+ GY +P GT+ V S +Q FP P+
Sbjct: 328 YMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTV-VVPTLDSVLYDNQEFPDPE 386
Query: 402 QFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 443
+F PE +L E+ + PF G R C A L
Sbjct: 387 KFKPEHFLNEN--GKFKYSDYFKPFSTGKRVCAGEGLARMEL 426
Score = 38.3 bits (90), Expect = 0.005
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 512
Q FP P++F PE +L + + PF G R C A L
Sbjct: 380 QEFPDPEKFKPEHFL--NENGKFKYSDYFKPFSTGKRVCAGEGLARMEL 426
Score = 27.9 bits (63), Expect = 8.5
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGP 59
PGP LP+IG L + F RL +++GP
Sbjct: 13 PGPFPLPIIGNLFQLELKNIPKSFTRLA-------QRFGP 45
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 60.3 bits (147), Expect = 6e-10
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 344 YAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRL-SQYFPGPD 401
Y AV+ E R + + + + Y +P GT + + S ++ FP P+
Sbjct: 330 YTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTT-ILISLTSVLHDNKEFPNPE 388
Query: 402 QFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 443
F P +L E +PF G R C+ A L
Sbjct: 389 MFDPHHFLDEG--GNFKKSKYFMPFSAGKRICVGEALAGMEL 428
Score = 38.3 bits (90), Expect = 0.005
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 512
+ FP+P+ F P +L D +PF G R C+ A L
Sbjct: 382 KEFPNPEMFDPHHFL--DEGGNFKKSKYFMPFSAGKRICVGEALAGMEL 428
Score = 28.3 bits (64), Expect = 8.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 11/43 (25%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDR--LHWNGLKKYRKYGPL 60
PGP LP+IG + Q + + + YGP+
Sbjct: 14 PGPTPLPVIGNIL---------QIGIKDISKSLTNLSKVYGPV 47
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 59.5 bits (145), Expect = 1e-09
Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 25/171 (14%)
Query: 286 IVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKR--GS---V 334
+V ++++ + G +T + T + L + + ++ + + R G
Sbjct: 269 LVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEV------EAKVH---EEIDRVIGKNRQP 319
Query: 335 TSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRL 393
D Y +AV+ E R + + + R + K+T + +P GT V S
Sbjct: 320 KFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTE-VYPMLGSVLR 378
Query: 394 -SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 443
+F P F P+ +L E Q +PF G R C A L
Sbjct: 379 DPSFFSNPQDFNPQHFLNEK--GQFKKSDAFVPFSIGKRNCFGEGLARMEL 427
Score = 37.1 bits (87), Expect = 0.013
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 512
+F +P F P+ +L + Q +PF G R C A L
Sbjct: 381 SFFSNPQDFNPQHFL--NEKGQFKKSDAFVPFSIGKRNCFGEGLARMEL 427
Score = 28.7 bits (65), Expect = 5.5
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 11/42 (26%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDR--LHWNGLKKYRKYGP 59
PGP LP IG Q + ++ + +K +YGP
Sbjct: 13 PGPTPLPFIGNYL---------QLNTEQMYNSLMKISERYGP 45
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 58.7 bits (143), Expect = 2e-09
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 25/171 (14%)
Query: 286 IVGMSVDILLAGIDTSAYTTCF-LLY-----HISRSASAQQRLFSAVKHLKR--GS---V 334
++ + + AG +T++ T + L H+ +R+ K +++ GS
Sbjct: 269 LILTVLSLFFAGTETTSTTLRYGFLLMLKYPHV------TERVQ---KEIEQVIGSHRPP 319
Query: 335 TSADYDGCAYAKAVLKETFRLSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSC-R 392
D Y AV+ E RL + GV + K+T GY +P T V S
Sbjct: 320 ALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTE-VFPVLSSALH 378
Query: 393 LSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 443
+YF P+ F P +L + +PF G R C+ A L
Sbjct: 379 DPRYFETPNTFNPGHFLDAN--GALKRNEGFMPFSLGKRICLGEGIARTEL 427
Score = 36.8 bits (86), Expect = 0.017
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 464 QYFPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNL 512
+YF +P+ F P +L D +PF G R C+ A L
Sbjct: 381 RYFETPNTFNPGHFL--DANGALKRNEGFMPFSLGKRICLGEGIARTEL 427
Score = 28.3 bits (64), Expect = 7.3
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 20 PGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGP 59
PGP LP++G L + F RL KYG
Sbjct: 13 PGPSPLPVLGNLLQMDRKGLLRSFLRLR-------EKYGD 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 3e-09
Identities = 78/464 (16%), Positives = 140/464 (30%), Gaps = 119/464 (25%)
Query: 96 HLALEKYRLDRPEVYSTGGLLPTNGKEW-----CR-IRSELQKGFS--EIKHVRSHLDLV 147
H+ E Y +L + C+ ++ + S EI H+ D V
Sbjct: 6 HMDFETGEHQ----YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 148 NQVMDEFIELRIGQRATFQDFLPELSRL-YLEIMCLVAFEKRLHSFTADQISSQSLSSKL 206
+ + F L Q Q F+ E+ R+ Y F I ++ +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINY--------------KFLMSPIKTEQRQPSM 107
Query: 207 IEAAYTANSCVLKTDNGPQLWRKFDTP---LYKKLKMAHGFIEEQALKFI-------SQK 256
+ Y + N Q++ K++ Y KL+ A +E + K + S K
Sbjct: 108 MTRMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNVLIDGVLGSGK 163
Query: 257 SSRVASV-QTNQATSLLEN---YLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHI 312
+ V + + ++ +L L + +++L LLY I
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQK-----------LLYQI 209
Query: 313 --------SRSASAQQRLFSAVKHLKRGSVTSADYDGC------AYAKAVLKETFRLS-P 357
S++ + R+ S L+R + S Y+ C F LS
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQNAKAWN-AFNLSCK 267
Query: 358 ISV-----GVGRILN--KETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLR 410
I + V L+ T +S H +T ++V L +Y Q +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPRE--- 321
Query: 411 EDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKTLAVTQNQVSCRLS------Q 464
+P + R +A + V K + ++ ++ L
Sbjct: 322 ---VLT-TNPRRLSIIAESIRDGLAT--WDNWKHVNCDKLTTIIESSLNV-LEPAEYRKM 374
Query: 465 Y-----FPSPDQFIPER-----WLRKDP------AKQCVSPYLV 492
+ FP P IP W + LV
Sbjct: 375 FDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 44.5 bits (104), Expect = 7e-05
Identities = 55/336 (16%), Positives = 98/336 (29%), Gaps = 87/336 (25%)
Query: 22 PKSLPLIGTLHKYLPF----IGEYQFDRL-HWNGLKKYRKYGPLVKEEIVPGVSLVWVFT 76
P+ LP + P I E D L W+ K K + SL V
Sbjct: 315 PQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD----KLTTIIESSLN-VLE 367
Query: 77 PEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNGKEWCRIRSELQKGFSE 136
P + ++ +P + LL W +
Sbjct: 368 PAEYRKMFDRLSVFPP---------------SAHIPTILLSL---IWFDVIKSD------ 403
Query: 137 IKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCLVAFEKRLHSFTADQ 196
V V+++ + + ++ ++ + +YLE+ + E LH
Sbjct: 404 ----------VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALH------ 446
Query: 197 ISSQSLSSKLIEAAYTANSCVLKTDNGPQLWRKFDTPLY-------KKLKMAHGFIEEQA 249
+++ Y D P D Y K ++ +
Sbjct: 447 -------RSIVD-HYNIPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 250 ----LKFISQKSSRVASVQTNQATSLLENYLANPKLSRRDIV-------GMSVDIL--LA 296
+F+ QK R S N + S+L N L K + I + IL L
Sbjct: 496 VFLDFRFLEQK-IRHDSTAWNASGSIL-NTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 297 GIDTSAYTTCFL-LYHISRSASAQQRLFSAVKHLKR 331
I+ + + + L I+ A + A K ++R
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 45.8 bits (109), Expect = 2e-05
Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 32/162 (19%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+++ G+ +LL G+DT F + H++R L +D
Sbjct: 239 RIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAEL-------------RSDP 285
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ +E FR P+ V R++ K+ G + G + + + P
Sbjct: 286 L--KLMRGA-EEMFRRFPV-VSEARMVAKDQEYKGVFLKRGDMILLPTALHGLDDAANPE 341
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----ARR 437
P + R FG GP C AR
Sbjct: 342 PWKLDFSR----RSISH-------STFGGGPHRCAGMHLARM 372
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 45.4 bits (108), Expect = 3e-05
Identities = 30/162 (18%), Positives = 50/162 (30%), Gaps = 32/162 (19%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
++ + M +L+ G+DT F + +++S +Q L
Sbjct: 233 PITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQEL-------------IERP 279
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ A +E R + V GRIL + G + G + +S +
Sbjct: 280 E--RIPAAC-EELLRRFSL-VADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENAC 335
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----ARR 437
P R FGHG C+ ARR
Sbjct: 336 PMHVDFSR----QKVSH-------TTFGHGSHLCLGQHLARR 366
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 42.3 bits (100), Expect = 3e-04
Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 32/161 (19%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+ +G+ +LL G+DT F++ ++SR + +
Sbjct: 240 PMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEM-------------RREP 286
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ V +E FR + V R + + G + G L + + ++
Sbjct: 287 L--KLQRGV-EELFRRFAV-VSDARYVVSDMEFHGTMLKEGDLILLPTALHGLDDRHHDD 342
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
P R F GP C AR
Sbjct: 343 PMTVDLSR----RDVTH-------STFAQGPHRCAGMHLAR 372
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 41.8 bits (99), Expect = 4e-04
Identities = 32/177 (18%), Positives = 59/177 (33%), Gaps = 38/177 (21%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYT----TCFLLYHISRSASAQQRLFS 324
+ L + + + D V ++ +L+AG T L H Q
Sbjct: 213 SKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQH-----PDQLAQLK 267
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
A + + V +E R + ++ + R ++ ++ V A
Sbjct: 268 A--------------NPSLAPQFV-EELCRYHTASALAIKRTAKEDVMIGDKLVRANEGI 312
Query: 384 VTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ NQ + R + F PD+F R+ P + + FG G CI A+
Sbjct: 313 IASNQSANRDEEVFENPDEFNMN---RKWPPQDPLG------FGFGDHRCIAEHLAK 360
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 30/161 (18%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+ + M ++L G+DT A + H++R Q+ L
Sbjct: 218 PWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLL-------------RERP 264
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
D A E R P V V R + G + G L + + F
Sbjct: 265 D--LIPAAA-DELMRRYPT-VAVSRNAVADVDADGVTIRKGDLVYLPSVLHNLDPASFEA 320
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
P++ +R P + G G C+ AR
Sbjct: 321 PEEVRFDR--GLAPIRH-------TTMGVGAHRCVGAGLAR 352
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 40.7 bits (96), Expect = 0.001
Identities = 33/166 (19%), Positives = 53/166 (31%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+ ++ G V ++LAG D + +L H Q F
Sbjct: 220 DATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRH-----PEQIDAFRG---------- 264
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
D + +AV E R L+ RI ++ L+G + G + + R
Sbjct: 265 ----DEQSAQRAV-DELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDP 319
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
P D+ R +P + FGHG C+ AR
Sbjct: 320 ALAPDVDRLDVTR----EPIPH-------VAFGHGVHHCLGAALAR 354
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 40.3 bits (95), Expect = 0.001
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 39/176 (22%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
L+ L L ++V +++ +L+AG +T+ L+ H Q +
Sbjct: 216 DELIARQLEEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQH-----PEQIDVLL 270
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAV 384
D A + V +E R + +S + R+ ++ + G + AG +
Sbjct: 271 R--------------DPGAVSGVV-EELLRFTSVSDHIVRMAKEDIEVGGATIKAGDAVL 315
Query: 385 TQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ R ++ + PD F R + + FGHG C+ AR
Sbjct: 316 VSITLMNRDAKAYENPDIFDARR----NARHH-------VGFGHGIHQCLGQNLAR 360
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 39.9 bits (94), Expect = 0.002
Identities = 36/161 (22%), Positives = 58/161 (36%), Gaps = 32/161 (19%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
LS D++G +LL GID +A + + ++ ++RL A
Sbjct: 216 SLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRL-------------IAHP 262
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ AV E R VGR++ +E + + G A+ ++ R F
Sbjct: 263 E--LIPNAV-DELLRFYG-PAMVGRLVTQEVTVGDITMKPGQTAMLWFPIASRDRSAFDS 318
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
PD + ER P + L GHG C+ R
Sbjct: 319 PDNIVIER----TPNRH-------LSLGHGIHRCLGAHLIR 348
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 39.1 bits (92), Expect = 0.003
Identities = 36/177 (20%), Positives = 57/177 (32%), Gaps = 40/177 (22%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
++L+ + + ++ + +L+A DT+A T LL Q L
Sbjct: 210 SALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDS-----PDQLALLR 264
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
D AV +E R L+ G R+ ++ L G + G
Sbjct: 265 E--------------DPSLVGNAV-EELLRYLTIGQFGGERVATRDVELGGVRIAKGEQV 309
Query: 384 VTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
V + + P++F R PA L FG G CI AR
Sbjct: 310 VAHVLAADFDPAFVEEPERFDITR----RPAPH-------LAFGFGAHQCIGQQLAR 355
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 38.8 bits (91), Expect = 0.003
Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 39/166 (23%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+S + V AG+ ++ L+ + L
Sbjct: 217 HVSDELFATIGVTFFGAGVISTGSFLTTALISLIQR-----PQLRNLLHE---------- 261
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
V +E R + G+ R+ + + V G L + + +
Sbjct: 262 ----KPELIPAGV-EELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDP 316
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
++FP P +R +P L FG G C R
Sbjct: 317 EHFPNPGSIELDR---PNPTSH-------LAFGRGQHFCPGSALGR 352
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 38.8 bits (91), Expect = 0.003
Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 40/177 (22%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
+L+ + LAN ++ R +++ ++ +L+AG +T+A + LL H Q
Sbjct: 217 GALVADQLANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDH-----PEQYAALR 271
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
A D AV +E R L+ + GR+ + + G + AG
Sbjct: 272 A--------------DRSLVPGAV-EELLRYLAIADIAGGRVATADIEVEGQLIRAGEGV 316
Query: 384 VTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ N ++ R + PD R L FG G C+ AR
Sbjct: 317 IVVNSIANRDGTVYEDPDALDIHR----SARHH-------LAFGFGVHQCLGQNLAR 362
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 38.8 bits (91), Expect = 0.003
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 33/167 (19%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
LS +DI+ + +++LLA + + T ++YH+ + + + R V A
Sbjct: 253 ALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLA-----DRSLVPRA-- 305
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS----- 394
+ ET R P + R L+++TV+ G + T V C +
Sbjct: 306 ---------IAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDT------IVFCMIGAANRD 350
Query: 395 -QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ F PD F R L FG G C+ A+
Sbjct: 351 PEAFEQPDVFNIHR-EDLGIKSAFSGAARHLAFGSGIHNCVGTAFAK 396
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 38.8 bits (91), Expect = 0.004
Identities = 32/177 (18%), Positives = 52/177 (29%), Gaps = 40/177 (22%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
+ + L +V ++ +L AG +T+A LL H Q +
Sbjct: 218 SRQIARQRQEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSH-----PEQLTVVK 272
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
A + AV +E R + R+ ++ + G + AG
Sbjct: 273 A--------------NPGRTPMAV-EELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGV 317
Query: 384 VTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ + F P ER L FG GP C+ AR
Sbjct: 318 IVSMLSANWDPAVFKDPAVLDVER----GARHH-------LAFGFGPHQCLGQNLAR 363
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 38.8 bits (91), Expect = 0.004
Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
++ ++ G+ ++L G++T A LL + Q L
Sbjct: 229 NVTDEELKGLCTALILGGVETVAGMIGFGVLALLDN-----PGQIELLFE---------- 273
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
+ V E R LSP+ R+ K+ V+ G + AG + ++ R
Sbjct: 274 ----SPEKAERVV-NELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDE 328
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
P PD R + FGHG C+ AR
Sbjct: 329 ALTPDPDVLDANR----AAVSD-------VGFGHGIHYCVGAALAR 363
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 38.0 bits (89), Expect = 0.006
Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 40/177 (22%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
+ L+ ++L ++ ++ + AG +T+ +T LL
Sbjct: 222 SKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDR-----PELPAELR 276
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
D AV E R LS R+ ++ LSG VPA
Sbjct: 277 K--------------DPDLMPAAV-DELLRVLSVADSIPLRVAAEDIELSGRTVPADDGV 321
Query: 384 VTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ + + F P++ R + FG+G C+ AR
Sbjct: 322 IALLAGANHDPEQFDDPERVDFHR----TDNHH-------VAFGYGVHQCVGQHLAR 367
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 37.6 bits (88), Expect = 0.008
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 41/178 (23%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
++L++ LS ++++ +++ +L+AG +++ L+ +R
Sbjct: 227 SALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTR-----PELRRQLL 281
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFRLSPISVGVG--RILNKETVLSGYHVPAGTL 382
AV +E R P+ VG R ++ L G + AG
Sbjct: 282 D--------------RPELIPSAV-EELTRWVPLGVGTAFPRYAVEDVTLRGVTIRAGEP 326
Query: 383 AVTQNQVSCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ + R FP D+ +R P + L FGHG C+ AR
Sbjct: 327 VLASTGAANRDQAQFPDADRIDVDR----TPNQH-------LGFGHGVHHCLGAPLAR 373
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 37.2 bits (87), Expect = 0.010
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 52/184 (28%)
Query: 269 TSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFS 324
++L++ L+ +IV ++ AG +T+ L H Q+ L
Sbjct: 215 SALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTH-----PEQRALVL 269
Query: 325 AVKHLKRGSVTSADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLA 383
+ ++ V +ET R +P S + R ++ + +PAG
Sbjct: 270 S--------------GEAEWSAVV-EETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDA- 313
Query: 384 VTQNQVSCRLS-------QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI-- 434
+ + P D+F R + +S FGHGP C
Sbjct: 314 -----LIVSYGALGRDERAHGPTADRFDLTR----TSGNRHIS------FGHGPHVCPGA 358
Query: 435 --AR 436
+R
Sbjct: 359 ALSR 362
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 37.2 bits (87), Expect = 0.011
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 36/162 (22%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
KL+ + + + +++ G +T+ ++ I + +
Sbjct: 172 KLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDAL-------------KNR 218
Query: 340 DGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFP 398
G V +ET R SPI R +++ ++ + G + + R +F
Sbjct: 219 SG-----FV-EETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDETFFD 272
Query: 399 GPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
PD F R L FG G C+ AR
Sbjct: 273 EPDLFKIGR-----REMH-------LAFGIGIHMCLGAPLAR 302
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 36.6 bits (85), Expect = 0.016
Identities = 18/100 (18%), Positives = 26/100 (26%), Gaps = 15/100 (15%)
Query: 351 ETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLR 410
E RL P R E L + + G V + R + F PD+ +R
Sbjct: 261 EVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANRDPEVFAEPDRLDVDR--- 317
Query: 411 EDPAKQCVSPYLVLPFGHGPRTCI----ARRSAEQNLQVL 446
A + H A L+
Sbjct: 318 -PDADR-------ALSAHRGHPGRLEELVTALATAALRAA 349
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 36.1 bits (84), Expect = 0.021
Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 27/168 (16%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
L+ D++ ++L+ G +T+ + ++ ++ L
Sbjct: 238 DLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRD--------------- 282
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
V +E R + ++ V R+ + ++G +P+GT V + R F
Sbjct: 283 GSADVDTVV-EEVLRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAANRDPAEFDD 341
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 447
PD F+P R P + + FGHG C+ A L V++
Sbjct: 342 PDTFLPGR----KPNRH-------ITFGHGMHHCLGSALARIELSVVL 378
Score = 28.8 bits (65), Expect = 4.6
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 466 FPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 516
F PD F+P R P + + FGHG C+ A L V++
Sbjct: 339 FDDPDTFLPGR----KPNRH-------ITFGHGMHHCLGSALARIELSVVL 378
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 36.1 bits (84), Expect = 0.023
Identities = 38/171 (22%), Positives = 61/171 (35%), Gaps = 41/171 (23%)
Query: 276 LANPKLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKR 331
L + +L+ + +++ +L AG+D+ A L H Q+ A
Sbjct: 221 LNDGELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAH-----PDQRAAALA------ 269
Query: 332 GSVTSADYDGCAYAKAVLKETFRLSPISVGVG--RILNKETVLSGYHVPAGTLAVTQNQV 389
D A+AV +E R + V R +++ G + AG L + +
Sbjct: 270 --------DPDVMARAV-EEVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGL 320
Query: 390 SCRLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ F GP++F R P L FGHG CI AR
Sbjct: 321 PNFDERAFTGPEEFDAAR----TPNPH-------LTFGHGIWHCIGAPLAR 360
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 35.7 bits (83), Expect = 0.032
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+LS+ ++V M++ +L+AG +T+ LL H Q++L +
Sbjct: 220 RLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTH-----PDQRKLLAE---------- 264
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
D + AV +E R SP+S R ++ SG +PAG + + + R +
Sbjct: 265 ----DPSLISSAV-EEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDA 319
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ P PD+ R D + + FGHG C+ AR
Sbjct: 320 DWMPEPDRLDITR----DASGG-------VFFGHGIHFCLGAQLAR 354
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 35.7 bits (83), Expect = 0.033
Identities = 41/166 (24%), Positives = 59/166 (35%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+L+ +++GM+ +L+AG +T+ LL H Q A
Sbjct: 247 RLTSEELLGMAHILLVAGHETTVNLIANGMYALLSH-----PDQLAALRA---------- 291
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
D AV +E R P+ R + L G +PAG + + R
Sbjct: 292 ----DMTLLDGAV-EEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAHRTP 346
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ FP P +F R D A L FGHG CI AR
Sbjct: 347 ERFPDPHRFDIRR----DTAGH-------LAFGHGIHFCIGAPLAR 381
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 34.2 bits (79), Expect = 0.099
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 44/168 (26%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+LS +++V + I+ AG DT+ Y F + ++ RS A + + A+
Sbjct: 238 RLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVK-------------AEP 284
Query: 340 DGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS---- 394
A+ E R + + +G R ++ G + G V +
Sbjct: 285 G--LMRNAL-DEVLRFDNILRIGTVRFARQDLEYCGASIKKGE------MVFLLIPSALR 335
Query: 395 --QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
F PD F R D + L +G GP C AR
Sbjct: 336 DGTVFSRPDVFDVRR----DTSAS-------LAYGRGPHVCPGVSLAR 372
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 34.2 bits (79), Expect = 0.11
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+LS R+I + +++AG +T+ + +SR + R + +D+
Sbjct: 258 RLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWW-------------SDF 304
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
DG A AV +E R + V + R L ++ L G + AG + R F
Sbjct: 305 DGLA-PTAV-EEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSANRDESKFAD 362
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPF-GHGPRTCIARRSAEQNLQVLI 447
P F R +P L F G G C+ A + ++V
Sbjct: 363 PWTFDLAR----NPNPH-------LGFGGGGAHFCLGANLARREIRVAF 400
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 33.8 bits (78), Expect = 0.14
Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSA---YTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTS 336
++ + VG++ + + G + LL
Sbjct: 229 EVGETEAVGLAGPLQIGGEAVTHNVGQMLYLLLTR-----RELMARMRE----------- 272
Query: 337 ADYDGCAYAKAVLKETFR-LSPIS-VGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
A A+ E R +S + VG+ RI ++ + G + AG + R
Sbjct: 273 ---RPGARGTAL-DELLRWISHRTSVGLARIALEDVEVHGTRIAAGEPVYVSYLAANRDP 328
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
FP PD+ +R DP L +G+G C AR
Sbjct: 329 DVFPDPDRIDLDR----DPNPH-------LAYGNGHHFCTGAVLAR 363
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 33.8 bits (78), Expect = 0.14
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 43/167 (25%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+L+ +I+ +L+AG +T+ + R+ L AD
Sbjct: 240 QLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALA-------------ADG 286
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS----- 394
+ + +ET R P V R + + + VP G + L+
Sbjct: 287 S--RASAVI-EETMRYDPPVQLVSRYAGDDLTIGTHTVPKGD------TMLLLLAAAHRD 337
Query: 395 -QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
PD+F P+R + L FG G C+ AR
Sbjct: 338 PTIVGAPDRFDPDR----AQIRH-------LGFGKGAHFCLGAPLAR 373
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 33.4 bits (77), Expect = 0.16
Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 351 ETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPGPDQFIPERWLR 410
E R+ P + R ++ + G + AG+ + R + F PD F R
Sbjct: 272 EMVRMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTRPPA 331
Query: 411 EDPAKQCVSPYLVLPFGHGPRTCI----ARRSAEQNLQVLI 447
L FG GP +C +R A VL
Sbjct: 332 ASRN---------LSFGLGPHSCAGQIISRAEATTVFAVLA 363
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 33.3 bits (77), Expect = 0.17
Identities = 37/171 (21%), Positives = 50/171 (29%), Gaps = 51/171 (29%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+SR +IV V + G +T A LL H Q L
Sbjct: 217 LMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAH-----PDQLDLLRR---------- 261
Query: 336 SADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS- 394
A+AV +E R P R L+ + L G + V
Sbjct: 262 ----RPDLLAQAV-EECLRYDPSVQSNTRQLDVDVELRGRRLRRDD------VVVVLAGA 310
Query: 395 -----QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ + PD F ER +S FG G R C+ AR
Sbjct: 311 ANRDPRRYDRPDDFDIER-----DPVPSMS------FGAGMRYCLGSYLAR 350
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 33.4 bits (77), Expect = 0.20
Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 39/166 (23%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
L ++ + +L+AG +T+ + H Q
Sbjct: 237 VLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQH-----PDQWMKIKE---------- 281
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
+ +AV +E R + V R+ ++ ++G +P GT V+ R
Sbjct: 282 ----NPELAPQAV-EEVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAHRDP 336
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ F D+F + A + FG GP C+ AR
Sbjct: 337 RVFADADRF---DITVKREAPS-------IAFGGGPHFCLGTALAR 372
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 33.1 bits (76), Expect = 0.21
Identities = 35/168 (20%), Positives = 57/168 (33%), Gaps = 27/168 (16%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+S RD G + AG DT++ ++ ++R R+ AD
Sbjct: 273 PMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVK-------------ADR 319
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ V +E R + R +T L G + AG + + FP
Sbjct: 320 N--LLPGIV-EEAIRWTTPVQHFMRTAATDTELCGQKIAAGDWLMLNYVAANHDPAQFPE 376
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 447
P +F P R + L FG G C+ A ++VL+
Sbjct: 377 PRKFDPTR----PANRH-------LAFGAGSHQCLGLHLARLEMRVLL 413
Score = 28.1 bits (63), Expect = 7.2
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 11/51 (21%)
Query: 466 FPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 516
FP P +F P R + L FG G C+ A ++VL+
Sbjct: 374 FPEPRKFDPTR----PANRH-------LAFGAGSHQCLGLHLARLEMRVLL 413
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 33.0 bits (76), Expect = 0.22
Identities = 32/171 (18%), Positives = 51/171 (29%), Gaps = 51/171 (29%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
KL+ + + + +AG +T+ + LL H Q
Sbjct: 218 KLTEEEAASTCILLAIAGHETTVNLISNSVLCLLQH-----PEQLLKLRE---------- 262
Query: 336 SADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS- 394
+ AV +E R + R+ +++ + G + G QV L
Sbjct: 263 ----NPDLIGTAV-EECLRYESPTQMTARVASEDIDICGVTIRQGE------QVYLLLGA 311
Query: 395 -----QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
F PD F R +S FGHG C+ AR
Sbjct: 312 ANRDPSIFTNPDVFDITR-----SPNPHLS------FGHGHHVCLGSSLAR 351
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 33.0 bits (76), Expect = 0.25
Identities = 29/167 (17%), Positives = 50/167 (29%), Gaps = 41/167 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+LS ++ + ++ AG +T+ LL Q L
Sbjct: 226 RLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTR-----PDQLALVRK---------- 270
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKE-TVLSGYHVPAGTLAVTQNQVSCRL 393
+A V +ET R + R + + G + G + + R
Sbjct: 271 ----GEVTWADVV-EETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRH 325
Query: 394 SQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ D F R K+ ++ FGHG C+ AR
Sbjct: 326 PDWHEDADTFDATR-----TVKEHLA------FGHGVHFCLGAPLAR 361
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 32.2 bits (74), Expect = 0.36
Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 39/165 (23%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
+LS ++ +++ +LLAG + S T LL H Q L
Sbjct: 225 RLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTH-----PDQLALVRR---------- 269
Query: 336 SADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQ 395
D A AV +E R R +E + G +P + + N + R +
Sbjct: 270 ----DPSALPNAV-EEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPK 324
Query: 396 YFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
FP P +F R D L FG G C+ A+
Sbjct: 325 QFPDPHRFDVTR----DTRGH-------LSFGQGIHFCMGRPLAK 358
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 32.3 bits (74), Expect = 0.40
Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 27/168 (16%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+ + I V I AG DT++ ++ + +SR+ S
Sbjct: 251 YIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAKS--------------- 295
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
D + V E R + R +T + G ++ G + + R + F
Sbjct: 296 DPALIPRLV-DEAVRWTAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSN 354
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 447
PD+F R P + L FG G C+ + A+ +++
Sbjct: 355 PDEFDITR----FPNRH-------LGFGWGAHMCLGQHLAKLEMKIFF 391
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 466 FPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 516
F +PD+F R P + L FG G C+ + A+ +++
Sbjct: 352 FSNPDEFDITR----FPNRH-------LGFGWGAHMCLGQHLAKLEMKIFF 391
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 32.2 bits (74), Expect = 0.42
Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 43/167 (25%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
+LS ++V ++ IL+ G +T+ +T + R+ L + A
Sbjct: 214 RLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQR-----DPSLLPGA-- 266
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS----- 394
++E R + + R+L +T G + AG ++
Sbjct: 267 ---------IEEMLRWTAPVKNMCRVLTADTEFHGTALCAGE------KMMLLFESANFD 311
Query: 395 -QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
F P++F +R +P L FG G C+ AR
Sbjct: 312 EAVFCEPEKFDVQR----NPNSH-------LAFGFGTHFCLGNQLAR 347
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 31.9 bits (73), Expect = 0.53
Identities = 29/168 (17%), Positives = 58/168 (34%), Gaps = 26/168 (15%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTSADY 339
++ + +G + +++ G DT+ + + + ++ +L +
Sbjct: 249 NMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLKA--------------- 293
Query: 340 DGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLSQYFPG 399
+ V E R + R ++ L G + G V R +
Sbjct: 294 NPALVETMV-PEIIRWQTPLAHMRRTAIADSELGGKTIRKGDKVVMWYYSGNRDDEVIDR 352
Query: 400 PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 447
P++FI +R P + L FG G C+ R AE L++L
Sbjct: 353 PEEFIIDR---PRPRQH-------LSFGFGIHRCVGNRLAEMQLRILW 390
Score = 28.0 bits (63), Expect = 8.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 466 FPSPDQFIPERWLRKDPAKQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLI 516
P++FI +R P + L FG G C+ R AE L++L
Sbjct: 350 IDRPEEFIIDR---PRPRQH-------LSFGFGIHRCVGNRLAEMQLRILW 390
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 31.8 bits (73), Expect = 0.59
Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 55/176 (31%)
Query: 276 LANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASA-----QQRLFSAVKHLK 330
+ N LS + +G + +L+AG +T+ IS S +
Sbjct: 189 VVNSNLSDIEKLGYIILLLIAGNETTTNL-------ISNSVIDFTRFNLWQRIRE----- 236
Query: 331 RGSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVS 390
A ++E R SP + R + L + G V
Sbjct: 237 ENLYLKA-----------IEEALRYSPPVMRTVRKTKERVKLGDQTIEEGE------YVR 279
Query: 391 CRLS------QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
++ + F ++FIP+R +P L FG G C+ AR
Sbjct: 280 VWIASANRDEEVFHDGEKFIPDR----NPNPH-------LSFGSGIHLCLGAPLAR 324
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 31.5 bits (72), Expect = 0.62
Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 40/166 (24%)
Query: 280 KLSRRDIVGMSVDILLAGIDTS---AYTTCFLLYHISRSASAQQRLFSAVKHLKRGSVTS 336
+++ + VG++V + + G + LL +
Sbjct: 226 EITLSEAVGLAVLLQIGGEAVTNNSGQMFHLLLSR-----PELAERLRS----------- 269
Query: 337 ADYDGCAYAKAVLKETFRLSPI--SVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
+ +A+ E R P +VG+ RI ++ + G + AG + R
Sbjct: 270 ---EPEIRPRAI-DELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAANRDP 325
Query: 395 QYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
+ FP PD+ ER P + FG GP C AR
Sbjct: 326 EVFPDPDRIDFER----SPNPH-------VSFGFGPHYCPGGMLAR 360
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 30.7 bits (70), Expect = 0.88
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 274 NYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASAQQRLFSAVKHLKRGS 333
L+N + + V +L+ GIDT+ + ++ I + + + ++++ GS
Sbjct: 89 TLLSNMLNQVKYM-PYMVQLLVGGIDTAPH-----VFSIDAAGGSVEDIYAST-----GS 137
Query: 334 VTSADYDGCAYAKAVLKETFR 354
G + VL+ +
Sbjct: 138 -------GSPFVYGVLESQYS 151
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 30.6 bits (70), Expect = 1.3
Identities = 34/169 (20%), Positives = 56/169 (33%), Gaps = 42/169 (24%)
Query: 276 LANPKLSRRDIVGMSVDILLAGIDTSAYTTCF----LLYHISRSASAQQRLFSAVKHLKR 331
+AN LS + G + +++AG +T+ + S ++ AV+
Sbjct: 190 IANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVREKGALKAVE---- 245
Query: 332 GSVTSADYDGCAYAKAVLKETFRLSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSC 391
E R SP + R+ ++ + + G L +
Sbjct: 246 -------------------EALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASAN 286
Query: 392 RLSQYFPGPDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
R + F PD FIP+R P L FG G C+ AR
Sbjct: 287 RDEEVFKDPDSFIPDR----TPNPH-------LSFGSGIHLCLGAPLAR 324
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 29.5 bits (66), Expect = 2.2
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 16/71 (22%)
Query: 288 GMSVDILLAGIDTSAY--TTCFLLYHISRS--ASAQQRLFSAVKHLKRGSVTSADYDGCA 343
G+ LLAG D A + + + + ++ + AV GS G
Sbjct: 154 GLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAV-----GS-------GSL 201
Query: 344 YAKAVLKETFR 354
+AK+ +K+ +
Sbjct: 202 FAKSSMKKLYS 212
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 29.5 bits (65), Expect = 3.1
Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 23/157 (14%)
Query: 373 SGYHVPAGTLAVTQNQVSCRLSQYF-----PGPDQFIPERW---LREDPAKQCVSPYLVL 424
+G++VP TL + + +F P D + +C
Sbjct: 132 AGWYVPLSTL-LPSGSRETAAATFFSSSCVPCADGKMFPSLCQLCAGKGTDKCACSSREP 190
Query: 425 PFGH-GPRTCIARRSAEQNLQVLIMKTLAVTQNQVSCRLSQYFPSPDQFIPERWLRKDPA 483
FG G C+ +A V +K L V + P+ L D
Sbjct: 191 YFGSWGALKCLQDGTA----DVSFVKHLTV---------FEAMPTKADRDQYELLCMDNT 237
Query: 484 KQCVSPYLVLPFGHGPRTCIARRSAEQNLQVLIMKIQ 520
++ V Y P + RS + + ++
Sbjct: 238 RRPVEEYEQCYLARVPSHVVVARSVDGKEDSIQELLR 274
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding,
virulence gangrene determinant, C2 domain; 1.80A
{Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A
1qmd_A 1ca1_A 1gyg_A 1kho_A
Length = 370
Score = 29.2 bits (64), Expect = 3.5
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 242 HGFIEEQALKFISQKSSRVASVQTNQATSLLENYL 276
H I Q + + S+ + +L+ +
Sbjct: 11 HAMIVTQGVSILENDLSKNEPESVRKNLEILKENM 45
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 29.1 bits (66), Expect = 4.0
Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 55/171 (32%)
Query: 280 KLSRRDIVGMSVDILLAGIDTSAY----TTCFLLYHISRSASAQQRLFSAVKHLKRGSVT 335
++S ++ G++ L+ + A L+ H Q L
Sbjct: 210 EISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTH-----PDQMALLRE---------- 254
Query: 336 SADYDGCAYAKAVLKETFR-LSPISVGVGRILNKETVLSGYHVPAGTLAVTQNQVSCRLS 394
A +E R S + R+ + ++G + AG + S
Sbjct: 255 ----KPELIDSAT-EEVLRHASIVEAPAPRVALADVRMAGRDIHAGDVLT----CS---- 301
Query: 395 QYFPG-----PDQFIPERWLREDPAKQCVSPYLVLPFGHGPRTCI----AR 436
D+F R + A + FGHG CI AR
Sbjct: 302 --MLATNRAPGDRFDITR----EKATH-------MAFGHGIHHCIGAPLAR 339
>2g5g_X Putative lipoprotein; cofacial heme, tyrosine ligand, dimer,
transport protein; HET: HEM; 1.90A {Campylobacter jejuni
subsp} SCOP: c.150.1.1
Length = 268
Score = 28.9 bits (64), Expect = 4.1
Identities = 15/131 (11%), Positives = 35/131 (26%)
Query: 1 MSKRLLCHTTSTVKSFDQIPGPKSLPLIGTLHKYLPFIGEYQFDRLHWNGLKKYRKYGPL 60
+ L + + + + + L + L+W+ + K++ Y
Sbjct: 67 LEGNLSSQNINFDVALEMLASTEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQF 126
Query: 61 VKEEIVPGVSLVWVFTPEDIETVYRCEGRYPERRSHLALEKYRLDRPEVYSTGGLLPTNG 120
V ++ T + + E + + + L P
Sbjct: 127 VNVVFYSKSKILGANLSRSEITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEEN 186
Query: 121 KEWCRIRSELQ 131
KE E+Q
Sbjct: 187 KELLDKLVEIQ 197
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 28.9 bits (65), Expect = 4.3
Identities = 5/33 (15%), Positives = 9/33 (27%)
Query: 440 EQNLQVLIMKTLAVTQNQVSCRLSQYFPSPDQF 472
E VL + + + YF +
Sbjct: 114 ENRTPVLAVLASSSEIANQRFGMPDYFRQSGTY 146
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like
fold, helix-turn-helix, transcription/DNA complex; 2.65A
{Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A
2phg_A 1vol_A*
Length = 207
Score = 28.1 bits (62), Expect = 6.1
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 130 LQKGFSEIKHVRSHLDLVNQVMDEFIELRIGQRATFQDFLPELSRLYLEIMCL-VAFEKR 188
+ F EI + ++L ++D + ++ Q L + + CL +A +
Sbjct: 5 MMNAFKEITTMADRINLPRNIVDR--TNNLFKQVYEQKSLKGRANDAIASACLYIACRQE 62
Query: 189 LHSFTADQISSQS-LSSKLIEAAYTANSCVLKTDNGPQ 225
T +I + S +S K I + L+T
Sbjct: 63 GVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLI 100
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 27.6 bits (62), Expect = 8.0
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 259 RVASVQTNQATSLLENYLANPKLSRRDIVGMSVDILLAGIDTSAYTTCFLLYHISRSASA 318
R V + A +L+ +L + + +++AG+D + L+ I S
Sbjct: 72 REPRVVS--ALQMLKQHL----FKYQG--HIGAYLIVAGVDPTGSH----LFSIHAHGST 119
Query: 319 QQRLFSAVKHLKRGSVTSADYDGCAYAKAVLKETFR 354
+ ++ GS G A AVL+ ++
Sbjct: 120 DVGYYLSL-----GS-------GSLAAMAVLESHWK 143
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.3 bits (60), Expect = 8.7
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 6/22 (27%)
Query: 215 SC--VLKT---DNGPQLWRKFD 231
C VL D + WR F
Sbjct: 47 LCGLVLSDKLVDTRSE-WRTFS 67
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,912,832
Number of extensions: 473354
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 150
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)