BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18222
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YPR|A Chain A, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
pdb|2YPR|B Chain B, Crystal Structure Of The Dna Binding Ets Domain Of Human
Protein Fev
Length = 102
Score = 167 bits (423), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/92 (82%), Positives = 81/92 (88%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
GQ+QLWQFLLELL + +N G I WEG GEF+L DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 6 GQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRA 65
Query: 77 LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
LRYYYDKNIM+KVHGKRYAYRFDFQGL ACQ
Sbjct: 66 LRYYYDKNIMSKVHGKRYAYRFDFQGLAQACQ 97
>pdb|1FLI|A Chain A, Dna-Binding Domain Of Fli-1
Length = 98
Score = 160 bits (404), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 79/92 (85%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
GQ+QLWQFLLELL + +N I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63
Query: 77 LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
LRYYYDKNIMTKVHGKRYAY+FDF G+ A Q
Sbjct: 64 LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95
>pdb|2NNY|A Chain A, Crystal Structure Of The Ets1 Dimer Dna Complex.
pdb|2NNY|B Chain B, Crystal Structure Of The Ets1 Dimer Dna Complex
Length = 171
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 73/103 (70%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S+ I W G EF+L DPDEVARRWG RK
Sbjct: 51 IPAAALAGYTGSG-PIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRK 109
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 110 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 152
>pdb|3MFK|A Chain A, Ets1 Complex With Stromelysin-1 Promoter Dna
pdb|3MFK|B Chain B, Ets1 Complex With Stromelysin-1 Promoter Dna
Length = 162
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 42 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143
>pdb|3RI4|A Chain A, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
pdb|3RI4|D Chain D, Ets1 Cooperative Binding To Widely Separated Sites On
Promoter Dna
Length = 163
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 43 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 101
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 102 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 144
>pdb|1MDM|B Chain B, Inhibited Fragment Of Ets-1 And Paired Domain Of Pax5
Bound To Dna
Length = 161
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 42 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 100
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 101 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 143
>pdb|1R36|A Chain A, Nmr-Based Structure Of Autoinhibited Murine Ets-1
Deltan301
Length = 140
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 21 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 79
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 80 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVSDLQSLL 122
>pdb|1GVJ|A Chain A, Ets-1 Dna Binding And Autoinhibitory Domains
pdb|1GVJ|B Chain B, Ets-1 Dna Binding And Autoinhibitory Domains
Length = 146
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 26 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 84
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 85 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
>pdb|1MD0|A Chain A, Crystal Structure Of An Inhibited Fragment Of Ets-1
pdb|1MD0|B Chain B, Crystal Structure Of An Inhibited Fragment Of Ets-1
Length = 141
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 72/103 (69%), Gaps = 3/103 (2%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 22 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 80
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 81 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 123
>pdb|2STT|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX, 25
Structures
pdb|2STW|A Chain A, Solution Nmr Structure Of The Human Ets1DNA COMPLEX,
Restrained Regularized Mean Structure
Length = 96
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 4 LACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRK 63
+ A G +GSG +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK
Sbjct: 2 IPAAALAGYTGSG-PIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRK 60
Query: 64 SKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF
Sbjct: 61 NKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 95
>pdb|1K78|B Chain B, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K78|F Chain F, Pax5(1-149)+ets-1(331-440)+dna
pdb|1K79|A Chain A, Ets-1(331-440)+ggaa Duplex
pdb|1K79|D Chain D, Ets-1(331-440)+ggaa Duplex
pdb|1K7A|A Chain A, Ets-1(331-440)+ggag Duplex
pdb|1K7A|D Chain D, Ets-1(331-440)+ggag Duplex
Length = 110
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 66/90 (73%), Gaps = 2/90 (2%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
G +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK+KP MNY+KLSR
Sbjct: 3 GPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRG 62
Query: 77 LRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 63 LRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 92
>pdb|4AVP|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|C Chain C, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4AVP|D Chain D, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1.
pdb|4B06|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human
Etv1 Complexed With Dna
Length = 106
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 66/82 (80%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
G +QLWQFL+ LL +PSN I W G EF+L++P+EVARRWG++K++P MNYDKLSR+
Sbjct: 10 GSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRS 69
Query: 77 LRYYYDKNIMTKVHGKRYAYRF 98
LRYYY+K IM KV G+RY Y+F
Sbjct: 70 LRYYYEKGIMQKVAGERYVYKF 91
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQG-EFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
V LWQFLL+LL E NG +I W G EF+LVD +EVAR WGLRK+K NMNYDKLSRAL
Sbjct: 5 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 64
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
RYYYDKNI+ KV G+++ Y+F
Sbjct: 65 RYYYDKNIIRKVSGQKFVYKF 85
>pdb|1AWC|A Chain A, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 110
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 61/80 (76%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
+QLWQFLLELL + I W G +GEF+L P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 79 YYYDKNIMTKVHGKRYAYRF 98
YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80
>pdb|1BC7|C Chain C, Serum Response Factor Accessory Protein 1a (Sap-1)DNA
Complex
pdb|1BC8|C Chain C, Structures Of Sap-1 Bound To Dna Sequences From The E74
And C-Fos Promoters Provide Insights Into How Ets
Proteins Discriminate Between Related Dna Targets
pdb|1K6O|A Chain A, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 93
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 55/68 (80%)
Query: 31 EPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH 90
+P N +I W + G+F+L+ +EVAR WG+RK+KPNMNYDKLSRALRYYY KNI+ KV+
Sbjct: 17 KPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 76
Query: 91 GKRYAYRF 98
G+++ Y+F
Sbjct: 77 GQKFVYKF 84
>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 157
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 55/68 (80%)
Query: 31 EPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH 90
+P N +I W + G+F+L+ +EVAR WG+RK+KPNMNYDKLSRALRYYY KNI+ KV+
Sbjct: 18 KPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVN 77
Query: 91 GKRYAYRF 98
G+++ Y+F
Sbjct: 78 GQKFVYKF 85
>pdb|2DAO|A Chain A, Solution Structure Of Ets Domain Transcriptional Factor
Etv6 Protein
Length = 118
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 11 GLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMN 69
G SGS G LW ++ +LL + I WE + + FR+VDP+ +AR WG K++ NM
Sbjct: 1 GSSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMT 60
Query: 70 YDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
Y+K+SRALR+YY NI+ K G+R +RF
Sbjct: 61 YEKMSRALRHYYKLNIIRKEPGQRLLFRF 89
>pdb|1YO5|C Chain C, Analysis Of The 2.0a Crystal Structure Of The
Protein-Dna Complex Of Human Pdef Ets Domain Bound To
The Prostate Specific Antigen Regulatory Site
Length = 97
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 11 GLSGSGGQ-VQLWQFLLELLGEP-SNGGVIVW-EGSQGEFRLVDPDEVARRWGLRKSKPN 67
L G Q + LWQFL ELL +P S G I W +G F++ D +VAR WG+RK++P
Sbjct: 2 SLDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPA 61
Query: 68 MNYDKLSRALRYYYDKNIMTKVH-GKRYAYRF 98
MNYDKLSR++R YY K I+ K +R Y+F
Sbjct: 62 MNYDKLSRSIRQYYKKGIIRKPDISQRLVYQF 93
>pdb|3JTG|A Chain A, Crystal Structure Of Mouse Elf3 C-Terminal Dna-Binding
Domai Complex With Type Ii Tgf-Beta Receptor Promoter
Dna
Length = 103
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 19 VQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
LW+F+ ++L P N G++ WE +G F+ + + VA+ WG +K NM Y+KLSRA
Sbjct: 5 THLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRA 64
Query: 77 LRYYYDKNIMTKVHGKRYAYRF 98
+RYYY + I+ +V G+R Y+F
Sbjct: 65 MRYYYKREILERVDGRRLVYKF 86
>pdb|2LF7|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To Q436
Length = 106
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21 LWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMNYDKLSRALRY 79
LW ++ +LL + I WE + + FR+VDP+ +AR WG K++ NM Y+K+SRALR+
Sbjct: 7 LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 80 YYDKNIMTKVHGKRYAYRF 98
YY NI+ K G+R +RF
Sbjct: 67 YYKLNIIRKEPGQRLLFRF 85
>pdb|2LF8|A Chain A, Intramolecular Regulation Of The Ets Domain Within Etv6
Sequence R335 To R458
Length = 128
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 21 LWQFLLELLGEPSNGGVIVWEGSQGE-FRLVDPDEVARRWGLRKSKPNMNYDKLSRALRY 79
LW ++ +LL + I WE + + FR+VDP+ +AR WG K++ NM Y+K+SRALR+
Sbjct: 7 LWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRH 66
Query: 80 YYDKNIMTKVHGKRYAYRF 98
YY NI+ K G+R +RF
Sbjct: 67 YYKLNIIRKEPGQRLLFRF 85
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 20 QLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
LW+F+ +LL P N G++ WE QG FR+V + +A+ WG RK M Y+KLSRAL
Sbjct: 10 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 69
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
RYYY I+ +V +R Y+F
Sbjct: 70 RYYYKTGILERVD-RRLVYKF 89
>pdb|1PUE|E Chain E, Pu.1 Ets Domain-Dna Complex
pdb|1PUE|F Chain F, Pu.1 Ets Domain-Dna Complex
Length = 89
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 18 QVQLWQFLLELLGEPSNGGVIVW-EGSQGEFRLVDP--DEVARRWGLRK-SKPNMNYDKL 73
+++L+QFLL+LL I W + +G F+ + +A RWG++K ++ M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 74 SRALRYYYDKNIMTKVHGKRYAYRF 98
+RALR Y + KV K+ Y+F
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQF 84
>pdb|2E85|A Chain A, Crystal Structure Of The Hydrogenase 3 Maturation
Protease
pdb|2E85|B Chain B, Crystal Structure Of The Hydrogenase 3 Maturation
Protease
Length = 159
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 43 SQGEFRLVDPDEVARRWGLRKSKPNMNY 70
+ GE R++DPD++A + + +NY
Sbjct: 72 NPGEIRIIDPDDIAEMFMMTTHNMPLNY 99
>pdb|2I8L|A Chain A, Solution Structure Of An Endopeptidase Hyci From
Escherichia Coli
Length = 156
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 43 SQGEFRLVDPDEVARRWGLRKSKPNMNY 70
+ GE R++DPD++A + + +NY
Sbjct: 69 NPGEIRIIDPDDIAEMFMMTTHNMPLNY 96
>pdb|3R7A|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Anthracis Str. Sterne
pdb|3R7A|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
Anthracis Str. Sterne
Length = 237
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 47 FRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHG 91
R DP + A W L ++ DK+S N++ VHG
Sbjct: 139 IRAADPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLVVVHG 183
>pdb|1PMS|A Chain A, Pleckstrin Homology Domain Of Son Of Sevenless 1 (Sos1)
With Glycine-Serine Added To The N-Terminus, Nmr, 20
Structures
Length = 136
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 86 MTKVHGKRYAYRFDFQGLMLACQASN--------TSDAYKLHQTLYLTQKKI 129
+T+V K + F F GLM+ C++++ +S Y+L + ++ + +I
Sbjct: 38 LTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASSAEYRLKEKFFMRKVQI 89
>pdb|3GJA|A Chain A, Cytc3
pdb|3GJA|B Chain B, Cytc3
pdb|3GJB|A Chain A, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
pdb|3GJB|B Chain B, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
Length = 319
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 41 EGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKN 84
+G G ++ +P+E+ RRW + + + L R+L Y D N
Sbjct: 23 DGYIGPVKIFEPEEMTRRWNIIRRQ------LLDRSLAIYPDSN 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,197,648
Number of Sequences: 62578
Number of extensions: 167454
Number of successful extensions: 416
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 30
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)