Query psy18222
Match_columns 130
No_of_seqs 111 out of 294
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:51:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4avp_A ETS translocation varia 100.0 4.9E-46 1.7E-50 267.1 7.7 98 14-111 7-106 (106)
2 1fli_A FLI-1; transcription/DN 100.0 2.9E-46 9.9E-51 265.0 5.0 97 14-110 1-97 (98)
3 2ypr_A Protein FEV; transcript 100.0 1.4E-45 4.8E-50 263.2 8.5 99 13-111 2-100 (102)
4 1bc8_C SAP-1, protein (SAP-1 E 100.0 5E-43 1.7E-47 246.4 8.0 85 16-100 2-86 (93)
5 1yo5_C SAM pointed domain cont 100.0 2.8E-42 9.7E-47 244.2 6.3 89 11-99 3-94 (97)
6 2dao_A Transcription factor ET 100.0 1E-41 3.5E-46 248.3 9.2 92 12-103 2-94 (118)
7 1wwx_A E74-like factor 5 ESE-2 100.0 1.9E-41 6.5E-46 243.5 8.6 90 12-102 2-93 (107)
8 1awc_A Protein (GA binding pro 100.0 2.3E-41 8E-46 244.0 8.8 84 19-102 1-84 (110)
9 1gvj_A C-ETS-1 protein, P54; t 100.0 4.1E-41 1.4E-45 252.6 7.6 91 15-105 36-128 (146)
10 1pue_E Protein (transcription 100.0 1.1E-40 3.9E-45 232.8 7.8 85 18-103 1-89 (89)
11 3jtg_A ETS-related transcripti 100.0 3.3E-40 1.1E-44 235.8 7.8 85 18-102 4-90 (103)
12 2nny_A C-ETS-1 protein, P54; p 100.0 2.1E-40 7.2E-45 253.9 7.1 91 15-105 61-153 (171)
13 1hbx_G ETS-domain protein ELK- 100.0 2.8E-40 9.6E-45 250.0 7.2 85 16-100 3-87 (157)
14 2lf8_A Transcription factor ET 100.0 1.7E-41 5.7E-46 249.8 0.0 93 15-107 1-96 (128)
15 3hts_B Heat shock transcriptio 97.1 0.001 3.5E-08 46.7 6.0 71 9-80 3-73 (102)
16 2ldu_A Heat shock factor prote 96.8 0.002 6.9E-08 46.4 5.3 61 18-80 17-78 (125)
17 1hks_A Heat-shock transcriptio 96.6 0.0021 7.1E-08 44.9 4.1 61 20-81 6-66 (106)
18 2irf_G IRF-2, interferon regul 79.6 3.6 0.00012 29.0 5.2 65 17-82 4-86 (113)
19 3qu6_A IRF3 protein; helix-tur 66.7 8.8 0.0003 27.2 4.6 66 15-81 5-87 (116)
20 2o61_A Transcription factor P6 66.3 9.2 0.00031 33.6 5.5 79 2-81 404-504 (540)
21 2dll_A Interferon regulatory f 62.7 4.9 0.00017 28.5 2.6 84 16-100 4-114 (121)
22 3qu3_A IRF-7, interferon regul 46.3 19 0.00066 26.1 3.6 65 15-80 9-101 (137)
23 2o61_A Transcription factor P6 38.0 50 0.0017 28.9 5.5 90 12-102 287-410 (540)
24 1okr_A MECI, methicillin resis 34.8 80 0.0027 20.3 5.1 48 51-101 26-74 (123)
25 2fu4_A Ferric uptake regulatio 32.9 41 0.0014 20.6 3.1 37 53-91 37-73 (83)
26 1p6r_A Penicillinase repressor 32.2 77 0.0026 19.2 4.4 45 51-98 25-70 (82)
27 1knv_A BSE634I restriction end 30.1 63 0.0022 26.3 4.5 47 33-81 6-54 (293)
28 2k4b_A Transcriptional regulat 27.8 64 0.0022 21.3 3.6 32 66-97 63-95 (99)
29 2zcw_A TTHA1359, transcription 26.3 90 0.0031 21.5 4.4 78 19-111 121-199 (202)
30 3e6c_C CPRK, cyclic nucleotide 23.8 82 0.0028 22.6 3.9 78 19-110 151-229 (250)
31 3eyy_A Putative iron uptake re 22.9 72 0.0024 22.1 3.3 29 63-91 45-73 (145)
32 1mzb_A Ferric uptake regulatio 22.0 1.1E+02 0.0036 20.8 4.0 35 64-98 47-83 (136)
33 2o03_A Probable zinc uptake re 21.9 78 0.0027 21.4 3.2 29 63-91 38-66 (131)
34 2oz6_A Virulence factor regula 21.9 82 0.0028 21.6 3.4 60 19-91 139-199 (207)
35 4ev0_A Transcription regulator 20.9 87 0.003 21.6 3.4 47 51-106 165-211 (216)
36 2fe3_A Peroxide operon regulat 20.8 76 0.0026 21.9 3.0 35 64-98 50-86 (145)
37 2w57_A Ferric uptake regulatio 20.2 90 0.0031 21.7 3.3 35 64-98 46-82 (150)
No 1
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=100.00 E-value=4.9e-46 Score=267.13 Aligned_cols=98 Identities=55% Similarity=1.064 Sum_probs=89.8
Q ss_pred CCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222 14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 93 (130)
Q Consensus 14 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r 93 (130)
.++|+++|||||++||+|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|
T Consensus 7 ~~~g~i~LwqFL~~LL~d~~~~~~I~W~~~~~~Fkl~dp~~VA~lWG~rKnkp~M~YeKlSRaLRyYY~kgii~Kv~G~r 86 (106)
T 4avp_A 7 QRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGER 86 (106)
T ss_dssp ----CCCHHHHHHHHHHCGGGTTTEEECSSTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEECTTCS
T ss_pred CCCCcEeHHHHHHHHHcCccCCCCCcccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCeEEecCCCe
Confidence 36789999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred eEEEe--cccchhhhhccCC
Q psy18222 94 YAYRF--DFQGLMLACQASN 111 (130)
Q Consensus 94 l~Y~F--~~~~~~~~~~~~~ 111 (130)
+||+| +++++++|++|||
T Consensus 87 ~vYkF~~~p~~l~~~~~~~~ 106 (106)
T 4avp_A 87 YVYKFVCDPEALFSMAFSDN 106 (106)
T ss_dssp SEEEECCSHHHHHHHHC---
T ss_pred EEEEecCCHHHHHhccCCCC
Confidence 99999 8899999999997
No 2
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=2.9e-46 Score=265.00 Aligned_cols=97 Identities=73% Similarity=1.280 Sum_probs=94.3
Q ss_pred CCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222 14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 93 (130)
Q Consensus 14 ~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r 93 (130)
+++|+++||+||++||.|+++.+||+|||+++||+|+||++||+|||.+|||++||||||||||||||++|||.||+|+|
T Consensus 1 ~gsg~~~LwqFL~~LL~d~~~~~~I~W~~~~g~Fklvd~e~VArlWG~rK~kp~MnYeklSRaLRyYY~k~i~~Kv~gkr 80 (98)
T 1fli_A 1 PGSGQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 80 (98)
T ss_dssp CCCSSCCSHHHHHHHHHTCSSCSSEECTTSSSSCEECCHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHTTSCCCBGGGS
T ss_pred CCCCceeHHHHHHHHhcCcccCCCeEEeCCCCEEEEcCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHHcCcEeecCCCe
Confidence 57899999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred eEEEecccchhhhhccC
Q psy18222 94 YAYRFDFQGLMLACQAS 110 (130)
Q Consensus 94 l~Y~F~~~~~~~~~~~~ 110 (130)
++|+|+++++..+++|.
T Consensus 81 ~vY~F~~~~~~~~~~~~ 97 (98)
T 1fli_A 81 YAYKFDFHGIAQALQPH 97 (98)
T ss_dssp SBCCCCTTSCSSSCCCC
T ss_pred EEEEecCccHhhhcCCC
Confidence 99999999999998875
No 3
>2ypr_A Protein FEV; transcription; 2.64A {Homo sapiens} PDB: 1fli_A
Probab=100.00 E-value=1.4e-45 Score=263.22 Aligned_cols=99 Identities=77% Similarity=1.326 Sum_probs=94.1
Q ss_pred CCCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCce
Q psy18222 13 SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGK 92 (130)
Q Consensus 13 ~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~ 92 (130)
-+++|+++|||||++||+|+++.+||+|++.++||+|+||++||+|||.+|||++||||||||||||||++|||+||+|+
T Consensus 2 ~~g~g~i~LwqFLl~LL~d~~~~~~I~W~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~Gk 81 (102)
T 2ypr_A 2 MKGSGQIQLWQFLLELLADRANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGK 81 (102)
T ss_dssp -CCCSSCCHHHHHHHHHTCGGGTTTCEECSSTTEEECSSHHHHHHHHHHHTTCTTCCHHHHHHHHTHHHHTTSEEECSSC
T ss_pred cCCCCcEeHHHHHHHHhcCCCCCCcccccCCCceEEecChHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCcEEecCCC
Confidence 46889999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccchhhhhccCC
Q psy18222 93 RYAYRFDFQGLMLACQASN 111 (130)
Q Consensus 93 rl~Y~F~~~~~~~~~~~~~ 111 (130)
|+||+|+++.+..+++|..
T Consensus 82 r~vYkF~~~~l~~~~~~~~ 100 (102)
T 2ypr_A 82 RYAYRFDFQGLAQACQPPP 100 (102)
T ss_dssp SSEEEECHHHHHHHHCC--
T ss_pred eEEEEeCCCcHHHhccCCC
Confidence 9999999999999998865
No 4
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=100.00 E-value=5e-43 Score=246.38 Aligned_cols=85 Identities=56% Similarity=1.106 Sum_probs=82.4
Q ss_pred CCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222 16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA 95 (130)
Q Consensus 16 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~ 95 (130)
.|+++||+||++||.|+++++||+|||+++||+++||++||++||.+||+++||||||||||||||++|||+||+|++++
T Consensus 2 ~~~i~Lw~FL~~LL~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyYY~~~il~Kv~g~r~v 81 (93)
T 1bc8_C 2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV 81 (93)
T ss_dssp CCCCCHHHHHHHHTTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEEECTTSTTE
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 47899999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q psy18222 96 YRFDF 100 (130)
Q Consensus 96 Y~F~~ 100 (130)
|+|+.
T Consensus 82 Y~F~~ 86 (93)
T 1bc8_C 82 YKFVS 86 (93)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99953
No 5
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=2.8e-42 Score=244.16 Aligned_cols=89 Identities=45% Similarity=0.819 Sum_probs=80.1
Q ss_pred CcCCCCCceehHHHHHHhhCCCC-CCCCeeEec-CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEe
Q psy18222 11 GLSGSGGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTK 88 (130)
Q Consensus 11 ~~~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~-~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~K 88 (130)
++++++|+++|||||++||.||+ +++||+||+ .++||+|+||++||+|||.+||+++||||||||||||||++|||+|
T Consensus 3 ~~~~~~~~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~~~VArlWG~rKnkp~MnYeklSRaLRyYY~~~ii~K 82 (97)
T 1yo5_C 3 LDALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRK 82 (97)
T ss_dssp ------CCCCHHHHHHHHHHCHHHHTTTEEEEETTTTEEEESCHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTTTTSEEC
T ss_pred cCCCCCCeeEHHHHHHHHhcCcccCCCceEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEee
Confidence 35678899999999999999986 699999998 5899999999999999999999999999999999999999999999
Q ss_pred cC-ceeeEEEec
Q psy18222 89 VH-GKRYAYRFD 99 (130)
Q Consensus 89 v~-g~rl~Y~F~ 99 (130)
|+ |+|+||+|.
T Consensus 83 v~~g~r~vY~F~ 94 (97)
T 1yo5_C 83 PDISQRLVYQFV 94 (97)
T ss_dssp CSSCCTTEEEES
T ss_pred ccCCcEEEEecC
Confidence 98 899999995
No 6
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1e-41 Score=248.31 Aligned_cols=92 Identities=42% Similarity=0.757 Sum_probs=85.7
Q ss_pred cCCCCCceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC
Q psy18222 12 LSGSGGQVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH 90 (130)
Q Consensus 12 ~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~ 90 (130)
+.+.+|.++||+||++||.|+++.+||+|||+ .++|+|+||++||+|||.+||+++||||||||||||||++|||.||+
T Consensus 2 ~~~~~g~~~LwqFLleLL~d~~~~~~I~W~~~~~g~Fklvdp~~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~ 81 (118)
T 2dao_A 2 SSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEP 81 (118)
T ss_dssp CCCCCCCCCHHHHHHHHHHCGGGTTTEEEEEGGGTEEEESCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHTSEECCS
T ss_pred CCccCcchHHHHHHHHHhCCcccCCceEeeCCCCCeEEEeCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCCEEecc
Confidence 45677899999999999999999999999995 68999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecccch
Q psy18222 91 GKRYAYRFDFQGL 103 (130)
Q Consensus 91 g~rl~Y~F~~~~~ 103 (130)
|+|++|+|.....
T Consensus 82 G~r~vY~F~~~p~ 94 (118)
T 2dao_A 82 GQRLLFRFMKTPD 94 (118)
T ss_dssp SSSSEEEECSCSG
T ss_pred CCeEEEEecCCHH
Confidence 9999999964433
No 7
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=1.9e-41 Score=243.49 Aligned_cols=90 Identities=46% Similarity=0.919 Sum_probs=84.0
Q ss_pred cCCCCCceehHHHHHHhhCCCC-CCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEec
Q psy18222 12 LSGSGGQVQLWQFLLELLGEPS-NGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKV 89 (130)
Q Consensus 12 ~~~~~g~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv 89 (130)
+++++|+++|||||++||.||+ +.+||+|||+ ++||+|+||++||+|||.+|||++||||||||||||||++|||.||
T Consensus 2 ~sg~~g~i~LwqFL~eLL~d~~~~~~~I~W~~~~~g~Fkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~~~ii~Kv 81 (107)
T 1wwx_A 2 SSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRALRYYYKTGILERV 81 (107)
T ss_dssp CCCCCSSCCHHHHHHHHHHCTTTCCSCCEEEETTTTEEECSCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred CCCCCCcEEHHHHHHHHHcCcccCCCcEEeecCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhcCcEEec
Confidence 5789999999999999999986 6799999995 7999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEecccc
Q psy18222 90 HGKRYAYRFDFQG 102 (130)
Q Consensus 90 ~g~rl~Y~F~~~~ 102 (130)
+ +|+||+|+..+
T Consensus 82 ~-~rlvY~F~~~~ 93 (107)
T 1wwx_A 82 D-RRLVYKFGKNA 93 (107)
T ss_dssp S-SSSEEEECSSC
T ss_pred c-ceEEEEeCCch
Confidence 5 89999996443
No 8
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=2.3e-41 Score=243.97 Aligned_cols=84 Identities=56% Similarity=1.080 Sum_probs=80.9
Q ss_pred eehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEEe
Q psy18222 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98 (130)
Q Consensus 19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~F 98 (130)
++|||||++||.|+++++||+|||++|||+++||++||++||.+||+++||||||||||||||++|||.||+|+|++|+|
T Consensus 1 i~LwqFLleLL~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY~k~ii~Kv~GkrlvY~F 80 (110)
T 1awc_A 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKF 80 (110)
T ss_dssp CCHHHHHHHHHTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGGSSSEEECTTSTTEEEE
T ss_pred CcHHHHHHHHhcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHhcCCEeeccCCeeEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy18222 99 DFQG 102 (130)
Q Consensus 99 ~~~~ 102 (130)
+++.
T Consensus 81 ~~~~ 84 (110)
T 1awc_A 81 VCDL 84 (110)
T ss_dssp CSCH
T ss_pred CCCH
Confidence 6543
No 9
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=100.00 E-value=4.1e-41 Score=252.61 Aligned_cols=91 Identities=65% Similarity=1.140 Sum_probs=86.6
Q ss_pred CCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceee
Q psy18222 15 SGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY 94 (130)
Q Consensus 15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl 94 (130)
++|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|+
T Consensus 36 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 115 (146)
T 1gvj_A 36 GSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 115 (146)
T ss_dssp TCCSCCHHHHHHHHHTCGGGTTTSEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTSEEECTTSSS
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEEecCCCeE
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe--cccchhh
Q psy18222 95 AYRF--DFQGLML 105 (130)
Q Consensus 95 ~Y~F--~~~~~~~ 105 (130)
+|+| +++++.+
T Consensus 116 vY~F~~~~~~l~g 128 (146)
T 1gvj_A 116 VYRFVCDLQSLLG 128 (146)
T ss_dssp EEEECSCHHHHHS
T ss_pred EEEeccchHhhcC
Confidence 9999 5555554
No 10
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex (transcription regulating/DNA), oncogene, transforming protein, DNA- binding, activator; HET: DNA; 2.10A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=1.1e-40 Score=232.82 Aligned_cols=85 Identities=35% Similarity=0.709 Sum_probs=79.3
Q ss_pred ceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe--ChHHHHHHhhccc-CCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222 18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV--DPDEVARRWGLRK-SKPNMNYDKLSRALRYYYDKNIMTKVHGKR 93 (130)
Q Consensus 18 ~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~--d~~~vArlWG~~K-nk~~M~YeklsRsLR~yY~kgIl~Kv~g~r 93 (130)
+++|||||++||.|+++++||+||| .+|+|+|+ ||++||++||.+| |+|+||||||||||||||++|||.||+ +|
T Consensus 1 ~i~LwqFL~~LL~d~~~~~~I~W~~~~~g~Fk~~~~~~e~VArlWG~rK~Nk~~MnYeKlSRaLRyYY~~~ii~Kv~-~r 79 (89)
T 1pue_E 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKMARALRNYGKTGEVKKVK-KK 79 (89)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEEEEETTTTEEEECTTTHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHSSEEECS-ST
T ss_pred CccHHHHHHHHhcCcccCCceEeecCCCcEEEEecCChHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHcCceeecc-ce
Confidence 4799999999999999999999999 57999997 7999999999999 789999999999999999999999998 79
Q ss_pred eEEEecccch
Q psy18222 94 YAYRFDFQGL 103 (130)
Q Consensus 94 l~Y~F~~~~~ 103 (130)
++|+|+++.+
T Consensus 80 ~vY~F~~~~~ 89 (89)
T 1pue_E 80 LTYQFSGEVL 89 (89)
T ss_dssp TEEEECTTC-
T ss_pred EEEeeccccC
Confidence 9999987653
No 11
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=100.00 E-value=3.3e-40 Score=235.78 Aligned_cols=85 Identities=40% Similarity=0.935 Sum_probs=80.2
Q ss_pred ceehHHHHHHhhCCCC-CCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222 18 QVQLWQFLLELLGEPS-NGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA 95 (130)
Q Consensus 18 ~~~LW~FLl~LL~d~~-~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~ 95 (130)
.++|||||++||+|++ ++++|+|||+ .++|+|+||++||+|||++|||++||||||||||||||++|||+||+|+++|
T Consensus 4 ~~~LwqFL~~LL~d~~~~~~~I~W~~~~~g~Fkl~dp~~VArlWG~rKnkp~MnYeKlSRaLRyYy~~~ii~Kv~G~r~v 83 (103)
T 3jtg_A 4 GTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV 83 (103)
T ss_dssp CCSHHHHHHHHHTCGGGCSSCEEEEETTTTEEEESSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSBCCCTTCTTE
T ss_pred cccHHHHHHHHHcCcccCCCccccccCCCceEEecCHHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCceEE
Confidence 3599999999999998 7899999995 7999999999999999999999999999999999999999999999999999
Q ss_pred EEecccc
Q psy18222 96 YRFDFQG 102 (130)
Q Consensus 96 Y~F~~~~ 102 (130)
|+|....
T Consensus 84 Y~F~~~~ 90 (103)
T 3jtg_A 84 YKFGKNS 90 (103)
T ss_dssp EEBCTTC
T ss_pred EEeCCCc
Confidence 9997553
No 12
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=100.00 E-value=2.1e-40 Score=253.91 Aligned_cols=91 Identities=65% Similarity=1.150 Sum_probs=86.3
Q ss_pred CCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceee
Q psy18222 15 SGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY 94 (130)
Q Consensus 15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl 94 (130)
++|+++|||||++||.|+++++||+|||+++||+++||++||+|||.+|||++||||||||||||||++|||+||+|+|+
T Consensus 61 ~sg~i~LwqFLleLL~d~~~~~~I~Wt~~~~eFklvdpe~VArlWG~rKnkp~MnYeKLSRaLRyYY~k~ii~Kv~Gkrl 140 (171)
T 2nny_A 61 GSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRY 140 (171)
T ss_dssp TCSSCCHHHHHHHHHTCTGGGGTCEECSSTTEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGGTTTSEEECTTSTT
T ss_pred CCCceeHHHHHHHHhcCcccCCceEeeCCCCEEEeCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCcEeecCCCeE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe--cccchhh
Q psy18222 95 AYRF--DFQGLML 105 (130)
Q Consensus 95 ~Y~F--~~~~~~~ 105 (130)
+|+| +++++.+
T Consensus 141 vY~F~~d~~~l~g 153 (171)
T 2nny_A 141 VYRFVSDLQSLLG 153 (171)
T ss_dssp EEEECTTHHHHHC
T ss_pred EEEeCCChHHHcC
Confidence 9999 4455554
No 13
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=100.00 E-value=2.8e-40 Score=250.05 Aligned_cols=85 Identities=56% Similarity=1.106 Sum_probs=82.5
Q ss_pred CCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeE
Q psy18222 16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYA 95 (130)
Q Consensus 16 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~ 95 (130)
.|+++||+||++||.|+++++||+|||+++||+++||++||+|||.+||+++||||||||||||||++|||+||+|+|++
T Consensus 3 ~~~i~LWqFLleLL~d~~~~~~I~Wt~~~geFklvdpe~VArLWG~rKnkp~MnYeKLSRALRyYY~k~Ii~KV~Gqrlv 82 (157)
T 1hbx_G 3 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQKFV 82 (157)
T ss_dssp CCCCCHHHHTTTSSSCGGGTTTEEECSSSSCEEETTHHHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEECSSCTTE
T ss_pred CCcccHHHHHHHHhcCcccCCceEEeCCCCEEEecCcHHHHHHHHhccCCCCcCHHHHHHHHHHHHhcCcEEecCCCeEE
Confidence 58999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred EEecc
Q psy18222 96 YRFDF 100 (130)
Q Consensus 96 Y~F~~ 100 (130)
|+|..
T Consensus 83 YkF~~ 87 (157)
T 1hbx_G 83 YKFVS 87 (157)
T ss_dssp EEESS
T ss_pred EeeCC
Confidence 99943
No 14
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-41 Score=249.85 Aligned_cols=93 Identities=39% Similarity=0.736 Sum_probs=86.9
Q ss_pred CCCceehHHHHHHhhCCCCCCCCeeEecC-CCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCcee
Q psy18222 15 SGGQVQLWQFLLELLGEPSNGGVIVWEGS-QGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKR 93 (130)
Q Consensus 15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~-~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~r 93 (130)
++|.++||+||++||.|+++.+||+|||+ .++|+|+||++||+|||.+|||++||||||||||||||++|||.||+|+|
T Consensus 1 ~s~~~~LWqFLleLL~d~~~~~~I~Wt~k~~geFklvdpe~VArlWG~rKnkp~MnYeKLSRALRyYY~k~Ii~Kv~Gqr 80 (128)
T 2lf8_A 1 GSHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMSRALRHYYKLNIIRKEPGQR 80 (128)
Confidence 46889999999999999999999999995 68999999999999999999999999999999999999999999999999
Q ss_pred eEEEe--cccchhhhh
Q psy18222 94 YAYRF--DFQGLMLAC 107 (130)
Q Consensus 94 l~Y~F--~~~~~~~~~ 107 (130)
++|+| .++.++++.
T Consensus 81 lvY~F~~~p~~l~~~~ 96 (128)
T 2lf8_A 81 LLFRFMKTPDEIMSGR 96 (128)
Confidence 99999 466666554
No 15
>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A
Probab=97.12 E-value=0.001 Score=46.74 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=50.8
Q ss_pred CcCcCCCCCceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHh
Q psy18222 9 SRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY 80 (130)
Q Consensus 9 ~r~~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~y 80 (130)
.|.+.+......+-.=|.++|+|++..++|+|...+..|.|.|++++++.==. +--..-+|.++-|-|-.|
T Consensus 3 ~~~s~~~~~~p~F~~KL~~ml~d~~~~~iI~W~~~G~sfiI~d~~~F~~~VLp-~yFkh~nfsSFvRQLN~Y 73 (102)
T 3hts_B 3 RRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLP-KYFKHSNFASFVRQLNMY 73 (102)
T ss_dssp -------CCSCHHHHHHHHHHHCGGGTTTSEECTTSCSEEESCHHHHHHHTHH-HHCSSCCHHHHHHHHHHT
T ss_pred cccCCCCCCCCcHHHHHHHHhcCCCCCCEEEEeCCCCEEEEcCHHHHHHHHHH-HhcCCCcHHHHHHHhhcC
Confidence 34555666666677777889999999999999999999999999888753111 123467899999999887
No 16
>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.79 E-value=0.002 Score=46.42 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=47.4
Q ss_pred ceehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHH-hhcccCCCCCcHHHHHHHHHHh
Q psy18222 18 QVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR-WGLRKSKPNMNYDKLSRALRYY 80 (130)
Q Consensus 18 ~~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArl-WG~~Knk~~M~YeklsRsLR~y 80 (130)
...+-.=|.++|+|++..++|+|...+..|.|.|++++++- =-. --..-+|.++-|-|-.|
T Consensus 17 ~~~F~~KL~~ml~d~~~~~iI~W~~~G~sFvV~d~~~F~~~vLp~--yFkh~nfsSFvRQLN~Y 78 (125)
T 2ldu_A 17 VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPK--YFKHNNMASFVRQLNMY 78 (125)
T ss_dssp CCHHHHHHHHHHHCTTTTTTEEECTTSSEEEECCHHHHHHHHHHH--HSSCCCHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhhCCCCCCEEEEcCCCCEEEEeCHHHHHHHHhHH--hcCCCcHHHHHHHhccc
Confidence 33455556678999999999999999999999999988752 221 12446899999999887
No 17
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=96.59 E-value=0.0021 Score=44.86 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=46.7
Q ss_pred ehHHHHHHhhCCCCCCCCeeEecCCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhh
Q psy18222 20 QLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYY 81 (130)
Q Consensus 20 ~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY 81 (130)
.+-.=|.++|+|++..++|+|...+..|.|.|++++++-==. +--..-+|.++-|-|-.|=
T Consensus 6 ~F~~KL~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~~vLp-~yFkh~n~~SFvRQLN~YG 66 (106)
T 1hks_A 6 AFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLP-LNYKHNNMASFIRQLNMYG 66 (106)
T ss_dssp TTHHHHHHHHSSSTTTTTSEESTTTSCEECSCCSTTTTTTST-TTTSCCCHHHHHHHHHHHC
T ss_pred cHHHHHHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHHHHhH-HhcCCCcHHHHHHhhhcCC
Confidence 344456688999999999999999999999999877653111 1235569999999998883
No 18
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=79.65 E-value=3.6 Score=28.99 Aligned_cols=65 Identities=12% Similarity=0.297 Sum_probs=49.6
Q ss_pred CceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe-----------C-hHHHHHHhhcccCC-----CCCcHHHHHHHHH
Q psy18222 17 GQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV-----------D-PDEVARRWGLRKSK-----PNMNYDKLSRALR 78 (130)
Q Consensus 17 g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~-----------d-~~~vArlWG~~Knk-----~~M~YeklsRsLR 78 (130)
++..|-.+|++.++++.+. -+.|+| ....|+|- + ...+=+.|..++|+ ..-+..+..+.+|
T Consensus 4 ~r~rlrpWL~~qi~sg~yp-GL~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~~~g~d~~dp~~WK~nfR 82 (113)
T 2irf_G 4 ERMRMRPWLEEQINSNTIP-GLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGIDKPDPKTWKANFR 82 (113)
T ss_dssp -CCCHHHHHHHHHHTTCST-TCEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSCCTTTSCCCHHHHHHHHH
T ss_pred cccchHHHHHHHhccCCCC-CceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCCCCCCCCCChhHHHHHHH
Confidence 5678899999999999997 688998 57999994 1 23677999999886 2357777777777
Q ss_pred Hhhh
Q psy18222 79 YYYD 82 (130)
Q Consensus 79 ~yY~ 82 (130)
.=-.
T Consensus 83 cALn 86 (113)
T 2irf_G 83 CAMN 86 (113)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 19
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=66.74 E-value=8.8 Score=27.19 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEeC-----------hHHHHHHhhcccCC-----CCCcHHHHHHHH
Q psy18222 15 SGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVD-----------PDEVARRWGLRKSK-----PNMNYDKLSRAL 77 (130)
Q Consensus 15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~d-----------~~~vArlWG~~Knk-----~~M~YeklsRsL 77 (130)
+..+.+|-.+|++.++++.+. -+.|+| ....|+|-= ...+=+.|+.++++ ..-+..+..+.+
T Consensus 5 ~~~k~rlr~WL~~qidsg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~~~g~d~~dp~~WKtnf 83 (116)
T 3qu6_A 5 GTPKPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNF 83 (116)
T ss_dssp ----CCHHHHHHHHHHHTCST-TCEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSCCBTTBCCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHhccCCcC-CcEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcccCCCCCCCHHHHHHHH
Confidence 445678999999999999997 688999 468999851 23577899999886 245677777777
Q ss_pred HHhh
Q psy18222 78 RYYY 81 (130)
Q Consensus 78 R~yY 81 (130)
|.=-
T Consensus 84 RcAL 87 (116)
T 3qu6_A 84 RSAM 87 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
No 20
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=66.27 E-value=9.2 Score=33.58 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=52.8
Q ss_pred cccccCCCcC---cC--CCCCceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe-------C----hHHHHHHhhcccC
Q psy18222 2 YELACAVSRG---LS--GSGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV-------D----PDEVARRWGLRKS 64 (130)
Q Consensus 2 ~~~~~p~~r~---~~--~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~-------d----~~~vArlWG~~Kn 64 (130)
|++..+.+-. ++ .+..+..|-.+|++.++.+.+. -+.|+| ....|+|- | ...+=+.|..++|
T Consensus 404 Y~~~~~~~~~~~~~~~~~~~~k~rlrpWL~~qi~sg~yp-Gl~W~d~~kt~FrIPWkH~~r~~~~~~d~~IFkaWA~~tG 482 (540)
T 2o61_A 404 YALSGSLSSDSSLSSPSALSPKPRILPWLVSQLDLGQLE-GVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATG 482 (540)
T ss_dssp EEESSSSCCCC--------------CHHHHHHHHHCCST-TCEESCTTSSCEEEECCCTTCTTCCTGGGHHHHHHHHTTT
T ss_pred EEecCCCCCcccccccccCCCccchHHHHHHHhccCCcC-cceEECCCCCEEEecCccCCcCCcchhhhHHHHHHHHHhC
Confidence 5555555222 22 3556789999999999999997 688999 46899985 1 3478899999998
Q ss_pred C-----CCCcHHHHHHHHHHhh
Q psy18222 65 K-----PNMNYDKLSRALRYYY 81 (130)
Q Consensus 65 k-----~~M~YeklsRsLR~yY 81 (130)
+ ..-++.+..+.||.=-
T Consensus 483 k~~~g~d~~dp~~WKtnfRcAL 504 (540)
T 2o61_A 483 AYVPGRDKPDLPTWKRNFRSAL 504 (540)
T ss_dssp SCCSSSSCCCHHHHHHHHHHHH
T ss_pred CCcCCCCCCCHHHHHHHHHHhh
Confidence 6 2567888888888765
No 21
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.68 E-value=4.9 Score=28.55 Aligned_cols=84 Identities=23% Similarity=0.366 Sum_probs=57.1
Q ss_pred CCceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEeC------------hHHHHHHhhcccCC-----CCCcHHHHHHHH
Q psy18222 16 GGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVD------------PDEVARRWGLRKSK-----PNMNYDKLSRAL 77 (130)
Q Consensus 16 ~g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~d------------~~~vArlWG~~Knk-----~~M~YeklsRsL 77 (130)
.+...|-.+|++.++.+.+++ +.|.| ....|+|-= ...+=+.|..++|+ ..-+.-+..+.|
T Consensus 4 ~~~~~lr~WL~~qidsg~ypG-L~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~~~g~d~~d~~~wK~nf 82 (121)
T 2dll_A 4 GSSGKLRQWLIDQIDSGKYPG-LVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRL 82 (121)
T ss_dssp CSSCCHHHHHHHHHHHTCSSS-CEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSCCCBTTBCCCHHHHHHHH
T ss_pred CCccchHHHHHHHhccCCCCC-ceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCCCcCCCCCCCHHHHHHHH
Confidence 345789999999999999986 89999 578999851 14677899999886 245666666666
Q ss_pred HHhhhc--ccEEe-------cCceeeEEEecc
Q psy18222 78 RYYYDK--NIMTK-------VHGKRYAYRFDF 100 (130)
Q Consensus 78 R~yY~k--gIl~K-------v~g~rl~Y~F~~ 100 (130)
|.=-.+ +|.+- ..+.--||+|.+
T Consensus 83 RcALn~~~~f~ev~~~~~~~~~~p~kVYrl~~ 114 (121)
T 2dll_A 83 RCALNKSNDFEELVERSQLDISDPYKVYRIVP 114 (121)
T ss_dssp HHHHHHCTTEEECTTTCBSSSSSCEEEEEECC
T ss_pred HHHhccCCCeEEecCCCcCCCCCCeEEEEECC
Confidence 554432 23222 123346788854
No 22
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=46.25 E-value=19 Score=26.13 Aligned_cols=65 Identities=14% Similarity=0.314 Sum_probs=48.6
Q ss_pred CCCceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe-----------ChHHHHHHhhcccCC--CC-----C-------
Q psy18222 15 SGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV-----------DPDEVARRWGLRKSK--PN-----M------- 68 (130)
Q Consensus 15 ~~g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~-----------d~~~vArlWG~~Knk--~~-----M------- 68 (130)
+..+.+|-.+|++.++++.+. -+.|+| ....|+|- +...+=+.|+.++++ +. -
T Consensus 9 ~~~r~rlrpWL~~qidSg~yp-GL~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~~~g~~~~~~~~~~~~~ 87 (137)
T 3qu3_A 9 GVQRVLFGDWLLGEVSSGQYE-GLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRWPPSGVNLPPPEAEAAE 87 (137)
T ss_dssp ---CCCHHHHHHHHHHHTCST-TCEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSSCTTCCCSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHhccCCcC-CceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCcCCCcccCCCccccccc
Confidence 344579999999999999997 688999 57899996 235788999999996 32 1
Q ss_pred --cHHHHHHHHHHh
Q psy18222 69 --NYDKLSRALRYY 80 (130)
Q Consensus 69 --~YeklsRsLR~y 80 (130)
+..+..+.||-=
T Consensus 88 ~~dp~~WKtnfRcA 101 (137)
T 3qu3_A 88 RRERRGWKTNFRCA 101 (137)
T ss_dssp HTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 556777777764
No 23
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=38.02 E-value=50 Score=28.91 Aligned_cols=90 Identities=11% Similarity=0.203 Sum_probs=60.0
Q ss_pred cCCCCCceehHHHHHHhhCCCCCCCCeeEec-CCCeEEEe-----------ChHHHHHHhhcccCCC--C----------
Q psy18222 12 LSGSGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLV-----------DPDEVARRWGLRKSKP--N---------- 67 (130)
Q Consensus 12 ~~~~~g~~~LW~FLl~LL~d~~~~~~I~Wt~-~~~eFri~-----------d~~~vArlWG~~Knk~--~---------- 67 (130)
+..+..+..|-.+|++.++++.+. -+.|+| ....|+|- +...+=+.|..++|+- .
T Consensus 287 ~~~~~~r~~lrpWL~~qi~sg~yp-Gl~W~d~~k~~FrIPWkH~~r~~~~e~d~~iFk~WA~~~Gk~~~g~~~~~~~p~~ 365 (540)
T 2o61_A 287 SAGAAPRVLFGEWLLGEISSGCYE-GLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPPPEA 365 (540)
T ss_dssp ---CCCCCCHHHHHHHHHHHTCST-TCEESSSSCCEEEEECCCTTCTTCCTGGGHHHHHHHHHTTSSCCCCC---CCCST
T ss_pred cccCCCcccHHHHHHHHHhcCCcC-CceEECCCCCEEEecceeCCcCCcccchhHHHHHHHHHhCCCCCCccccCCCccc
Confidence 444566788999999999999997 688998 57999994 1357789999999862 1
Q ss_pred --CcHHHHHHHHHHhhhc--ccEEecC------ceeeEEEecccc
Q psy18222 68 --MNYDKLSRALRYYYDK--NIMTKVH------GKRYAYRFDFQG 102 (130)
Q Consensus 68 --M~YeklsRsLR~yY~k--gIl~Kv~------g~rl~Y~F~~~~ 102 (130)
.+..+..+.+|.=-.+ ++.+-.. +...+|+|..+.
T Consensus 366 ~~~d~~~WK~nfRcALn~~~~~~~l~d~s~d~~~p~kVY~~~~~~ 410 (540)
T 2o61_A 366 ETAERAGWKTNFRCALRSTRRFVMLRDNSGDPADQHKVYALSGSL 410 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEESCSTTSCEEEEEESSSS
T ss_pred cccchHHHHHHHHHHhccCCCeEEcccccCCCCCCeeEEEecCCC
Confidence 1455666666655432 3222211 245789995543
No 24
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=34.81 E-value=80 Score=20.31 Aligned_cols=48 Identities=8% Similarity=0.235 Sum_probs=37.5
Q ss_pred ChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC-ceeeEEEeccc
Q psy18222 51 DPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH-GKRYAYRFDFQ 101 (130)
Q Consensus 51 d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~-g~rl~Y~F~~~ 101 (130)
...++|+.-|.. +.++.-+++|.|..--++|.+.+.. |++.+|-..++
T Consensus 26 t~~ela~~l~~~---~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~ 74 (123)
T 1okr_A 26 SANNIIEEIQMQ---KDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVE 74 (123)
T ss_dssp EHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSC
T ss_pred CHHHHHHHHhcc---CCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecC
Confidence 457788888764 4588999999999999999998765 67777766443
No 25
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.87 E-value=41 Score=20.59 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCc
Q psy18222 53 DEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHG 91 (130)
Q Consensus 53 ~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g 91 (130)
+++++.=. +..+.++-.++.|.|...-+.|++.++.+
T Consensus 37 ~el~~~l~--~~~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 37 EDLYKRLI--DMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHH--HTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHH--HhCCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 44444332 33578999999999999999999999875
No 26
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=32.22 E-value=77 Score=19.24 Aligned_cols=45 Identities=13% Similarity=0.246 Sum_probs=34.7
Q ss_pred ChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecC-ceeeEEEe
Q psy18222 51 DPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVH-GKRYAYRF 98 (130)
Q Consensus 51 d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~-g~rl~Y~F 98 (130)
...+|++.-+.. +.++.-++++.|..--++|++.+.. |+...|..
T Consensus 25 t~~ei~~~l~~~---~~~s~~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~ 70 (82)
T 1p6r_A 25 NTNEVIKELSKT---STWSPKTIQTMLLRLIKKGALNHHKEGRVFVYTP 70 (82)
T ss_dssp EHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHhhc---CCccHHHHHHHHHHHHHCCCeEEEecCCEEEEEe
Confidence 456777777653 4688999999999999999998876 66566643
No 27
>1knv_A BSE634I restriction endonuclease; APO-enzyme, hydrolase; 2.17A {Geobacillus stearothermophilus} SCOP: c.52.1.7 PDB: 3v1z_A* 3v20_A* 3v21_A*
Probab=30.05 E-value=63 Score=26.25 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=39.2
Q ss_pred CCCCCeeEec--CCCeEEEeChHHHHHHhhcccCCCCCcHHHHHHHHHHhh
Q psy18222 33 SNGGVIVWEG--SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYY 81 (130)
Q Consensus 33 ~~~~~I~Wt~--~~~eFri~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY 81 (130)
.+++||.|-- ....|+|...+.++.+.|..- |.+++...--.+|.|-
T Consensus 6 ~~~~c~~~~~~n~~tk~ri~~~n~~~~~~~~~i--P~~~isd~l~~~~n~~ 54 (293)
T 1knv_A 6 TNSNCVEEYKENGKTKIRIKPFNALIELYHHQT--PTGSIKENLDKLENYV 54 (293)
T ss_dssp GGCSSEEEECCSSSCEEEECHHHHHHHHCSSSC--CCSBHHHHHHHHHHHH
T ss_pred ccchHHHHHHhcCCCcEEEchHHHHHHHHhccC--CCccHHHHHHHHHHHH
Confidence 4689999965 468999988899999999887 4468998888888884
No 28
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=27.76 E-value=64 Score=21.31 Aligned_cols=32 Identities=16% Similarity=0.405 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHHhhhcccEEecC-ceeeEEE
Q psy18222 66 PNMNYDKLSRALRYYYDKNIMTKVH-GKRYAYR 97 (130)
Q Consensus 66 ~~M~YeklsRsLR~yY~kgIl~Kv~-g~rl~Y~ 97 (130)
+.++.-++.|.|..--++|.+.+.. |+.++|.
T Consensus 63 ~~~s~sTVt~~L~rLe~KGlV~R~~~gR~~~Y~ 95 (99)
T 2k4b_A 63 LEWSLATVKTLLGRLVKKEMLSTEKEGRKFVYR 95 (99)
T ss_dssp GCCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred cCCCHhhHHHHHHHHHHCCCEEEEeCCCEEEEE
Confidence 3577899999999999999998876 6656654
No 29
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=26.30 E-value=90 Score=21.51 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=50.7
Q ss_pred eehHHHHHHhhCCCCCCCCeeEecCCCeEEE-eChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEE
Q psy18222 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRL-VDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYR 97 (130)
Q Consensus 19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri-~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~ 97 (130)
.+|-.||+.+-..... .+.+..+.+ +..+++|.+=| ++-++++|.|+..-+.|+|....++ ..=
T Consensus 121 ~Rl~~~L~~l~~~~~~------~~~~~~~~~~~t~~~lA~~lg-------~sr~tvsR~l~~L~~~g~I~~~~~~--i~i 185 (202)
T 2zcw_A 121 NRMAAALLELSETPLA------HEEEGKVVLKATHDELAAAVG-------SVRETVTKVIGELAREGYIRSGYGK--IQL 185 (202)
T ss_dssp HHHHHHHHHHTTSTTE------EEETTEEEEECCHHHHHHHHT-------CCHHHHHHHHHHHHHTTSEEEETTE--EEE
T ss_pred HHHHHHHHHHHHhcCC------CCCCcEEccCCCHHHHHHHhC-------CCHHHHHHHHHHHHHCCCEEeCCCE--EEE
Confidence 4667777776533211 222334443 35688998877 4789999999999999999865542 223
Q ss_pred ecccchhhhhccCC
Q psy18222 98 FDFQGLMLACQASN 111 (130)
Q Consensus 98 F~~~~~~~~~~~~~ 111 (130)
-+.+.|...+..+.
T Consensus 186 ~d~~~L~~~~~~~~ 199 (202)
T 2zcw_A 186 LDLKGLKELAESRG 199 (202)
T ss_dssp SCHHHHHHHHTSCC
T ss_pred eCHHHHHHHhcccc
Confidence 36777776664443
No 30
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.79 E-value=82 Score=22.62 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=49.6
Q ss_pred eehHHHHHHhhCCCCCCCCeeEecCCCeEEE-eChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEE
Q psy18222 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRL-VDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYR 97 (130)
Q Consensus 19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFri-~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~ 97 (130)
.++-.||+.+-...... .+.+..+.+ +..+++|..=|. +-++++|.|+..-+.|+|....++ ..-
T Consensus 151 ~Rl~~~L~~l~~~~~~~-----~~~~~~i~~~~t~~~iA~~lG~-------sr~tvsR~l~~L~~~g~I~~~~~~--i~i 216 (250)
T 3e6c_C 151 IRILRLFYELCSSQGKR-----VGDTYEITMPLSQKSIGEITGV-------HHVTVSRVLASLKRENILDKKKNK--IIV 216 (250)
T ss_dssp HHHHHHHHHHHHHHCEE-----ETTEEEEECCCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEECSSE--EEE
T ss_pred HHHHHHHHHHHHHhCCC-----CCCCcEecCCCCHHHHHHHhCC-------cHHHHHHHHHHHHHCCCeEeCCCE--EEE
Confidence 35666666654331110 112223433 255788888764 779999999999999999987653 333
Q ss_pred ecccchhhhhccC
Q psy18222 98 FDFQGLMLACQAS 110 (130)
Q Consensus 98 F~~~~~~~~~~~~ 110 (130)
-+.+.|...+..+
T Consensus 217 ~d~~~L~~~a~~~ 229 (250)
T 3e6c_C 217 YNLGELKHLSEQT 229 (250)
T ss_dssp SCHHHHHHHHTSS
T ss_pred ecHHHHHHHHccC
Confidence 3777777776554
No 31
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.86 E-value=72 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=25.6
Q ss_pred cCCCCCcHHHHHHHHHHhhhcccEEecCc
Q psy18222 63 KSKPNMNYDKLSRALRYYYDKNIMTKVHG 91 (130)
Q Consensus 63 Knk~~M~YeklsRsLR~yY~kgIl~Kv~g 91 (130)
+..+.++-.++-|+|...-+.|++.++..
T Consensus 45 ~~~~~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 45 KTASGINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp TTCTTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred hhCCCCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 33578999999999999999999999864
No 32
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.99 E-value=1.1e+02 Score=20.83 Aligned_cols=35 Identities=6% Similarity=0.177 Sum_probs=28.5
Q ss_pred CCCCCcHHHHHHHHHHhhhcccEEecCc--eeeEEEe
Q psy18222 64 SKPNMNYDKLSRALRYYYDKNIMTKVHG--KRYAYRF 98 (130)
Q Consensus 64 nk~~M~YeklsRsLR~yY~kgIl~Kv~g--~rl~Y~F 98 (130)
..+.++-.++-|.|...-+.|++.++.. ....|..
T Consensus 47 ~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 47 AGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred hCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3578999999999999999999999973 3345554
No 33
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.95 E-value=78 Score=21.38 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=25.7
Q ss_pred cCCCCCcHHHHHHHHHHhhhcccEEecCc
Q psy18222 63 KSKPNMNYDKLSRALRYYYDKNIMTKVHG 91 (130)
Q Consensus 63 Knk~~M~YeklsRsLR~yY~kgIl~Kv~g 91 (130)
+..+.++-.++-|.|...-+.|++.++..
T Consensus 38 ~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 38 RRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 34688999999999999999999999864
No 34
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.86 E-value=82 Score=21.59 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=40.4
Q ss_pred eehHHHHHHhhCCCCCCCCeeEecCCCeEE-EeChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCc
Q psy18222 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFR-LVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHG 91 (130)
Q Consensus 19 ~~LW~FLl~LL~d~~~~~~I~Wt~~~~eFr-i~d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g 91 (130)
.++..||+.+...+... ...+ .+. -+..+++|..=| ++-+++||.|+..-++|+|..-.+
T Consensus 139 ~Rl~~~L~~l~~~~~~~-----~~~~-~~~~~~t~~~lA~~lg-------~sr~tvsR~l~~l~~~g~I~~~~~ 199 (207)
T 2oz6_A 139 GRVARTLLDLCQQPDAM-----THPD-GMQIKITRQEIGRIVG-------CSREMVGRVLKSLEEQGLVHVKGK 199 (207)
T ss_dssp HHHHHHHHHHTTSTTCE-----EETT-EEEEECCHHHHHHHHT-------SCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHhcCCC-----CCCC-ceecccCHHHHHHHhC-------CCHHHHHHHHHHHHHCCCEEecCC
Confidence 35777887765543211 1112 232 245688888877 477999999999999999987654
No 35
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=20.85 E-value=87 Score=21.59 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=33.5
Q ss_pred ChHHHHHHhhcccCCCCCcHHHHHHHHHHhhhcccEEecCceeeEEEecccchhhh
Q psy18222 51 DPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLA 106 (130)
Q Consensus 51 d~~~vArlWG~~Knk~~M~YeklsRsLR~yY~kgIl~Kv~g~rl~Y~F~~~~~~~~ 106 (130)
..+++|..=| ++-++++|.|+..-+.|++....|+ ..=-+.+.|...
T Consensus 165 t~~~lA~~lg-------~sr~tvsR~l~~l~~~g~I~~~~~~--i~i~d~~~L~~~ 211 (216)
T 4ev0_A 165 RHHELAALAG-------TSRETVSRVLHALAEEGVVRLGPGT--VEVREAALLEEI 211 (216)
T ss_dssp CHHHHHHHHT-------SCHHHHHHHHHHHHHTTSEEEETTE--EEESCHHHHHHH
T ss_pred CHHHHHHHhC-------CCHHHHHHHHHHHHHCCCEEecCCE--EEEeCHHHHHHH
Confidence 5677887776 5779999999999999999875542 222255555443
No 36
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.82 E-value=76 Score=21.88 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCCCCcHHHHHHHHHHhhhcccEEecCc--eeeEEEe
Q psy18222 64 SKPNMNYDKLSRALRYYYDKNIMTKVHG--KRYAYRF 98 (130)
Q Consensus 64 nk~~M~YeklsRsLR~yY~kgIl~Kv~g--~rl~Y~F 98 (130)
..+.++-.++.|.|...-+.|++.++.. ....|..
T Consensus 50 ~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 50 KFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp GCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred hCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 3578999999999999999999999863 2344543
No 37
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.15 E-value=90 Score=21.71 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCCCCcHHHHHHHHHHhhhcccEEecCc--eeeEEEe
Q psy18222 64 SKPNMNYDKLSRALRYYYDKNIMTKVHG--KRYAYRF 98 (130)
Q Consensus 64 nk~~M~YeklsRsLR~yY~kgIl~Kv~g--~rl~Y~F 98 (130)
..+.++-.++-|.|...-+.|++.++.. ....|..
T Consensus 46 ~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 46 LGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred hCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 4578999999999999999999999952 2344544
Done!