RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18222
(130 letters)
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Length = 98
Score = 133 bits (335), Expect = 7e-42
Identities = 71/92 (77%), Positives = 79/92 (85%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
GQ+QLWQFLLELL + +N I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63
Query: 77 LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
LRYYYDKNIMTKVHGKRYAY+FDF G+ A Q
Sbjct: 64 LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex;
3.15A {Homo sapiens} SCOP: a.4.5.21
Length = 157
Score = 131 bits (330), Expect = 2e-40
Identities = 52/109 (47%), Positives = 72/109 (66%)
Query: 14 GSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKL 73
GS + LWQFLL+LL +P N +I W + G+F+L+ +EVAR WG+RK+KPNMNYDKL
Sbjct: 1 GSDSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKL 60
Query: 74 SRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTL 122
SRALRYYY KNI+ KV+G+++ Y+F +L ++L
Sbjct: 61 SRALRYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESL 109
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged
helix-turn-helix, DNA-binding specificity,
transcription/DNA complex; HET: DNA; 1.93A {Homo
sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Length = 93
Score = 123 bits (309), Expect = 4e-38
Identities = 48/83 (57%), Positives = 65/83 (78%)
Query: 16 GGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSR 75
+ LWQFLL+LL +P N +I W + G+F+L+ +EVAR WG+RK+KPNMNYDKLSR
Sbjct: 2 DSAITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSR 61
Query: 76 ALRYYYDKNIMTKVHGKRYAYRF 98
ALRYYY KNI+ KV+G+++ Y+F
Sbjct: 62 ALRYYYVKNIIKKVNGQKFVYKF 84
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA
complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Length = 171
Score = 124 bits (312), Expect = 1e-37
Identities = 57/96 (59%), Positives = 66/96 (68%)
Query: 3 ELACAVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLR 62
+ A + G +QLWQFLLELL + S+ I W G EF+L DPDEVARRWG R
Sbjct: 49 PVIPAAALAGYTGSGPIQLWQFLLELLTDKSSQSFISWTGDGWEFKLSDPDEVARRWGKR 108
Query: 63 KSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
K+KP MNY+KLSR LRYYYDKNI+ K GKRY YRF
Sbjct: 109 KNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRF 144
>2dao_A Transcription factor ETV6; ETS domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 118
Score = 122 bits (306), Expect = 2e-37
Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 11 GLSGSGGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMN 69
G SGS G LW ++ +LL + I WE FR+VDP+ +AR WG K++ NM
Sbjct: 1 GSSGSSGCRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMT 60
Query: 70 YDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
Y+K+SRALR+YY NI+ K G+R +RF
Sbjct: 61 YEKMSRALRHYYKLNIIRKEPGQRLLFRF 89
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain;
1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A
1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Length = 146
Score = 121 bits (304), Expect = 1e-36
Identities = 60/100 (60%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 7 AVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKP 66
A + G +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK+KP
Sbjct: 28 AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 87
Query: 67 NMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 88 KMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
>2lf8_A Transcription factor ETV6; auto-inhibition; NMR {Mus musculus}
Length = 128
Score = 120 bits (302), Expect = 2e-36
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 16 GGQVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLS 74
LW ++ +LL + I WE FR+VDP+ +AR WG K++ NM Y+K+S
Sbjct: 2 SHMRLLWDYVYQLLSDSRYENFIRWEDKESKIFRIVDPNGLARLWGNHKNRTNMTYEKMS 61
Query: 75 RALRYYYDKNIMTKVHGKRYAYRF 98
RALR+YY NI+ K G+R +RF
Sbjct: 62 RALRHYYKLNIIRKEPGQRLLFRF 85
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation
and repression, structural genomics; NMR {Homo sapiens}
SCOP: a.4.5.21
Length = 107
Score = 116 bits (291), Expect = 4e-35
Identities = 42/107 (39%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 11 GLSGSGGQVQLWQFLLELLGEPS-NGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNM 68
G SGS G LW+F+ +LL P N G++ WE QG FR+V + +A+ WG RK M
Sbjct: 1 GSSGSSGSSHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRM 60
Query: 69 NYDKLSRALRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDA 115
Y+KLSRALRYYY I+ +V +R Y+F + +
Sbjct: 61 TYEKLSRALRYYYKTGILERV-DRRLVYKFGKNAHGWQEDKLSGPSS 106
>4avp_A ETS translocation variant 1; transcription, transcriptional
activation and repression, DN binding protein, E
twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens}
Length = 106
Score = 114 bits (287), Expect = 2e-34
Identities = 52/86 (60%), Positives = 67/86 (77%)
Query: 13 SGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDK 72
S G +QLWQFL+ LL +PSN I W G EF+L++P+EVARRWG++K++P MNYDK
Sbjct: 6 SQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDK 65
Query: 73 LSRALRYYYDKNIMTKVHGKRYAYRF 98
LSR+LRYYY+K IM KV G+RY Y+F
Sbjct: 66 LSRSLRYYYEKGIMQKVAGERYVYKF 91
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA
complex, type II TGF-beta receptor, activa alternative
splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus}
Length = 103
Score = 114 bits (286), Expect = 2e-34
Identities = 34/86 (39%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 15 SGGQVQLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDK 72
+ LW+F+ ++L P N G++ WE +G F+ + + VA+ WG +K NM Y+K
Sbjct: 1 APRGTHLWEFIRDILIHPELNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEK 60
Query: 73 LSRALRYYYDKNIMTKVHGKRYAYRF 98
LSRA+RYYY + I+ +V G+R Y+F
Sbjct: 61 LSRAMRYYYKREILERVDGRRLVYKF 86
>1awc_A Protein (GA binding protein alpha); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: a.4.5.21
Length = 110
Score = 113 bits (284), Expect = 5e-34
Identities = 47/80 (58%), Positives = 61/80 (76%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
+QLWQFLLELL + I W G +GEF+L P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 79 YYYDKNIMTKVHGKRYAYRF 98
YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80
>1yo5_C SAM pointed domain containing ETS transcription factor;
protein-DNA complex, double helix, transcription/DNA
complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Length = 97
Score = 112 bits (281), Expect = 8e-34
Identities = 41/89 (46%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 13 SGSGGQVQLWQFLLELLGEP-SNGGVIVWE-GSQGEFRLVDPDEVARRWGLRKSKPNMNY 70
+ + LWQFL ELL +P S G I W +G F++ D +VAR WG+RK++P MNY
Sbjct: 5 ALGSQPIHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNY 64
Query: 71 DKLSRALRYYYDKNIMTKVH-GKRYAYRF 98
DKLSR++R YY K I+ K +R Y+F
Sbjct: 65 DKLSRSIRQYYKKGIIRKPDISQRLVYQF 93
>1pue_E Protein (transcription factor PU.1 (TF PU.1)); complex
(transcription regulating/DNA), oncogene, transforming
protein, DNA- binding, activator; HET: DNA; 2.10A {Mus
musculus} SCOP: a.4.5.21
Length = 89
Score = 103 bits (258), Expect = 2e-30
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 18 QVQLWQFLLELLGEPSNGGVIVWEGSQ---GEFRLVDPDEVARRWGLRKS-KPNMNYDKL 73
+++L+QFLL+LL I W +F + +A RWG++K + M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 74 SRALRYYYDKNIMTKVHGKRYAYRFDFQGL 103
+RALR Y + KV K+ Y+F + L
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQFSGEVL 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.052
Identities = 21/157 (13%), Positives = 36/157 (22%), Gaps = 78/157 (49%)
Query: 24 FLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL------ 77
L ++ E G+ W+ W ++N DKL+ +
Sbjct: 328 RRLSIIAESIRDGLATWD----------------NW------KHVNCDKLTTIIESSLNV 365
Query: 78 ------RYYY--------DKNIMTKV----------------------------HGKRYA 95
R + +I T + K
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 96 YRF-DFQGLMLACQASNTSDAYKLHQTL---YLTQKK 128
L L + N Y LH+++ Y K
Sbjct: 426 ISIPSIY-LELKVKLEN---EYALHRSIVDHYNIPKT 458
Score = 30.6 bits (68), Expect = 0.13
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 38/124 (30%)
Query: 37 VIVWEGSQGEFRLVDPDEV---------ARRWG-----------LRKSKPNMNYDKLSRA 76
++W D V + L N L R+
Sbjct: 393 SLIWFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 77 L--RY----YYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTLYL----TQ 126
+ Y +D + + + +Y Y + + + L + ++L +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSH----IGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 127 KKIK 130
+KI+
Sbjct: 505 QKIR 508
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 28.0 bits (63), Expect = 0.90
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 46 EFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
+ RL+D ++ P + DK+ A
Sbjct: 118 QMRLLDAEQACSIV------PVLRRDKVFGAT 143
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 27.2 bits (61), Expect = 1.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 49 LVDPDEVARRWGLRKSKPNMN 69
L+D + + + W LR+ M
Sbjct: 375 LLDEETLKKVWLLRRMLSAMT 395
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 27 ELLGEPSNGGVIV------WEGSQGEFRLVDP----DEVARRWGLRKSKPNMNYDKLSRA 76
E+LG ++ W+ + + V +++A G+ + R
Sbjct: 415 EILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGVSVQEVYDEMLSRKRY 474
Query: 77 LRYYYDKNI 85
L + I
Sbjct: 475 LELMLKRGI 483
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 26.8 bits (60), Expect = 2.2
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 49 LVDPDEVARRWGLRKSKPNMN 69
L +E+ + W LRK M
Sbjct: 374 LTTQEELQKMWILRKIIHPMG 394
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 26.0 bits (58), Expect = 3.8
Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 37 VIVWEGSQGEFRLV---DPDEVARRWGLRKSKPNMNYDKLSRALRY 79
+++ +G + EF + +P+ V + + + +Y ++ A +
Sbjct: 101 LLIHDGVRSEFDQIDTSNPNCVV----IADAGESFSYQNMNNAFQV 142
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 25.8 bits (57), Expect = 5.6
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 6/28 (21%)
Query: 46 EFRLVDPDEVARRWGLRKSKPNMNYDKL 73
E RL+ P E + P ++ + +
Sbjct: 115 EGRLLSPAECQELY------PLLDGENI 136
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory
proteins, DNA-binding, DNA binding 3-helical bundle
fold; 1.80A {Novosphingobium aromaticivorans}
Length = 212
Score = 25.3 bits (55), Expect = 5.8
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 38 IVWEG-SQGEFRLVDPDEVAR 57
I+ E S G F ++ DE
Sbjct: 138 IIGEAMSDGAFSGLEVDETIS 158
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted
DNA-binding transcriptional regulator TETR/ACRR family;
2.10A {Clostridium acetobutylicum atcc 824}
Length = 203
Score = 25.1 bits (55), Expect = 6.5
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 44 QGEFRLVDPDEVAR------RWGLRKSKPNMNYDKLSRALRYYYD 82
+G F++ P E A + L + + +S L + +
Sbjct: 142 EGVFKVKYPLETAEIILTLSHFYLDEDLFKWKKEDMSLKLTAFKE 186
>3hts_B Heat shock transcription factor; transcription regulation,
DNA-binding protein, complex (WING helix_TURN_
helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22
PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A
1fbq_A
Length = 102
Score = 24.7 bits (54), Expect = 6.6
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 13 SGSGGQVQLWQFLL---ELLGEPSNGGVIVWEGSQGEFRLVDPDEVAR 57
S G + F+ ++ + SN I W S + + + +
Sbjct: 4 RASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQ 51
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2,
protein structure initiative; HET: MSE; 2.60A
{Haloarcula marismortui atcc 43049}
Length = 199
Score = 25.0 bits (55), Expect = 7.2
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 44 QGEFRLVDPDEVARR 58
+G F VD + V R
Sbjct: 148 EGVFTDVDAEHVTRS 162
>2ldu_A Heat shock factor protein 1; structural genomics, northeast
structural genomics consortiu DNA-binding, PSI-biology,
protein structure initiative; NMR {Homo sapiens}
Length = 125
Score = 24.7 bits (54), Expect = 8.4
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 25 LLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARR 58
L L+ +P +I W S F + D + A+
Sbjct: 24 LWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKE 57
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance,
TETR, malachite green, DNA- binding, plasmid, repressor;
HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B*
3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B*
1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B*
1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Length = 194
Score = 24.7 bits (54), Expect = 9.3
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 44 QGEFRLVDPDEVAR 57
GE+ + D + V++
Sbjct: 137 NGEWSINDVNAVSK 150
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 25.0 bits (55), Expect = 9.6
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 46 EFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
L++ DE+ +RW P + + A+
Sbjct: 114 TVDLLEGDEINKRW------PGITVPENYNAI 139
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 24.9 bits (55), Expect = 9.7
Identities = 3/14 (21%), Positives = 7/14 (50%)
Query: 66 PNMNYDKLSRALRY 79
+ ++ KL A +
Sbjct: 154 EHFSFAKLREACAH 167
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 24.9 bits (55), Expect = 9.9
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 46 EFRLVDPDEVARRWGLRKSKPNMNYDKLSR 75
+ +DP +V P +N R
Sbjct: 133 DAEWLDPSQVKEAC------PIINTSDDIR 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,073,554
Number of extensions: 118519
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 35
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)