RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18222
(130 letters)
>d1flia_ a.4.5.21 (A:) Fli-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 146 bits (370), Expect = 1e-47
Identities = 71/92 (77%), Positives = 79/92 (85%)
Query: 17 GQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
GQ+QLWQFLLELL + +N I WEG+ GEF++ DPDEVARRWG RKSKPNMNYDKLSRA
Sbjct: 4 GQIQLWQFLLELLSDSANASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRA 63
Query: 77 LRYYYDKNIMTKVHGKRYAYRFDFQGLMLACQ 108
LRYYYDKNIMTKVHGKRYAY+FDF G+ A Q
Sbjct: 64 LRYYYDKNIMTKVHGKRYAYKFDFHGIAQALQ 95
>d1gvja_ a.4.5.21 (A:) ETS-1 transcription factor, residues 331-440
{Human (Homo sapiens) [TaxId: 9606]}
Length = 142
Score = 138 bits (348), Expect = 1e-43
Identities = 60/100 (60%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
Query: 7 AVSRGLSGSGGQVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKP 66
A + G +QLWQFLLELL + S I W G EF+L DPDEVARRWG RK+KP
Sbjct: 28 AAALAGYTGSGPIQLWQFLLELLTDKSCQSFISWTGDGWEFKLSDPDEVARRWGKRKNKP 87
Query: 67 NMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF--DFQGLM 104
MNY+KLSR LRYYYDKNI+ K GKRY YRF D Q L+
Sbjct: 88 KMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQSLL 127
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 135 bits (342), Expect = 1e-42
Identities = 50/105 (47%), Positives = 70/105 (66%)
Query: 18 QVQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
+ LWQFLL+LL +P N +I W + G+F+L+ +EVAR WG+RK+KPNMNYDKLSRAL
Sbjct: 3 AITLWQFLLQLLQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRAL 62
Query: 78 RYYYDKNIMTKVHGKRYAYRFDFQGLMLACQASNTSDAYKLHQTL 122
RYYY KNI+ KV+G+++ Y+F +L ++L
Sbjct: 63 RYYYVKNIIKKVNGQKFVYKFVSYPEILNMDPMTVGRIEGDCESL 107
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 110
Score = 131 bits (330), Expect = 2e-41
Identities = 47/80 (58%), Positives = 61/80 (76%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALR 78
+QLWQFLLELL + I W G +GEF+L P+ VA++WG RK+KP MNY+KLSRALR
Sbjct: 1 IQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALR 60
Query: 79 YYYDKNIMTKVHGKRYAYRF 98
YYYD +++ KV GKR+ Y+F
Sbjct: 61 YYYDGDMICKVQGKRFVYKF 80
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 128 bits (324), Expect = 7e-41
Identities = 54/81 (66%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 19 VQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
V LWQFLL+LL E NG +I W GEF+LVD +EVAR WGLRK+K NMNYDKLSRAL
Sbjct: 1 VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL 60
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
RYYYDKNI+ KV G+++ Y+F
Sbjct: 61 RYYYDKNIIRKVSGQKFVYKF 81
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets
transcription SPDEF {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 118 bits (298), Expect = 9e-37
Identities = 41/83 (49%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 19 VQLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRA 76
+ LWQFL ELL +P S G I W +G F++ D +VAR WG+RK++P MNYDKLSR+
Sbjct: 3 IHLWQFLKELLLKPHSYGRFIRWLNKEKGIFKIEDSAQVARLWGIRKNRPAMNYDKLSRS 62
Query: 77 LRYYYDKNIMTKVH-GKRYAYRF 98
+R YY K I+ K +R Y+F
Sbjct: 63 IRQYYKKGIIRKPDISQRLVYQF 85
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 117 bits (296), Expect = 2e-36
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 20 QLWQFLLELLGEP-SNGGVIVWEG-SQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRAL 77
LW+F+ +LL P N G++ WE QG FR+V + +A+ WG RK M Y+KLSRAL
Sbjct: 3 HLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLSRAL 62
Query: 78 RYYYDKNIMTKVHGKRYAYRF 98
RYYY I+ +V +R Y+F
Sbjct: 63 RYYYKTGILERV-DRRLVYKF 82
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 115 bits (290), Expect = 2e-35
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 18 QVQLWQFLLELLGEPSNGGVIVWEG-SQGEFRLVD--PDEVARRWGLRK-SKPNMNYDKL 73
+++L+QFLL+LL I W +G F+ + +A RWG++K ++ M Y+K+
Sbjct: 1 KIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYEKM 60
Query: 74 SRALRYYYDKNIMTKVHGKRYAYRFD 99
+RALR Y + KV K+ Y+F
Sbjct: 61 ARALRNYGKTGEVKKVK-KKLTYQFS 85
>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast
(Kluyveromyces lactis) [TaxId: 28985]}
Length = 92
Score = 29.8 bits (67), Expect = 0.031
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 25 LLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY 80
L ++ + SN I W S + + + + + K + N+ R L Y
Sbjct: 9 LWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHS-NFASFVRQLNMY 63
>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila
melanogaster [TaxId: 7227]}
Length = 106
Score = 28.7 bits (64), Expect = 0.085
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 25 LLELLGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYY 80
L L+ + +I W F + + + A+ L + + N R L Y
Sbjct: 11 LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKEL-LPLNYKHNNMASFIRQLNMY 65
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 27.2 bits (60), Expect = 0.55
Identities = 15/60 (25%), Positives = 21/60 (35%)
Query: 39 VWEGSQGEFRLVDPDEVARRWGLRKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAYRF 98
+ GEF L + + G S NY L+ Y D GK Y+ R+
Sbjct: 193 TLDPLYGEFVLTQENLQIPKSGKIYSFNEGNYKLWDENLKKYIDDLKEPGPSGKPYSARY 252
>d1jrob2 d.133.1.1 (B:124-777) Xanthine dehydrogenase chain B,
C-terminal domain {Rhodobacter capsulatus [TaxId:
1061]}
Length = 654
Score = 26.0 bits (56), Expect = 1.8
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 29 LGEPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSK 65
L P+ GGV++ SQ +VA GL
Sbjct: 59 LALPAEGGVVIHCSSQHPSE--IQHKVAHALGLAFHD 93
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 414
Score = 24.9 bits (53), Expect = 3.6
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 12/43 (27%)
Query: 52 PDEVARRWGLRKSKPNMN-----YD-------KLSRALRYYYD 82
+++AR+ L+ P ++ YD L++ YY
Sbjct: 6 KEDIARKEQLKSLLPPLDNIINLYDFEYLASQTLTKQAWAYYS 48
>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula
marismortui [TaxId: 2238]}
Length = 128
Score = 24.1 bits (52), Expect = 4.8
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 101 QGLMLACQASNTSD 114
+ + L C S +D
Sbjct: 96 KNVRLTCIGSPDAD 109
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 261
Score = 24.4 bits (53), Expect = 4.9
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 59 WGLRKSKPNMNYDKLSRALRYYYDKNI 85
W R KP M ++ + D I
Sbjct: 233 WHTRTEKPKMKQEEQLQRQGRGSDPAI 259
>d1ffvb2 d.133.1.1 (B:147-803) Carbon monoxide (CO) dehydrogenase
molybdoprotein {Hydrogenophaga pseudoflava [TaxId:
47421]}
Length = 657
Score = 24.2 bits (51), Expect = 6.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 31 EPSNGGVIVWEGSQGEFRLVDPDEVARRWGLRKSK 65
+P G + + SQ V V+ G+ +SK
Sbjct: 78 DPIKGDLTTYITSQAPH--VVRTVVSMLSGIPESK 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 511,397
Number of extensions: 23363
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 19
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)