RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18223
(264 letters)
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 75.3 bits (186), Expect = 5e-18
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEK 75
D YE+L V + A+ E+I+KA+ KL+L HPD+ A EKFK + + +LSD EK
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNP--GDPAAEEKFKEINEAYEVLSDPEK 58
Query: 76 RKVYD 80
R +YD
Sbjct: 59 RAIYD 63
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 78.4 bits (194), Expect = 1e-16
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSD 72
+D YE+L V K A+ E+I+KA+ KL+ HPDR + A EKFK + + +LSD
Sbjct: 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDR--NPGDKEAEEKFKEINEAYEVLSD 59
Query: 73 VEKRKVYDQTG 83
EKR YDQ G
Sbjct: 60 PEKRAAYDQFG 70
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 72.6 bits (179), Expect = 9e-15
Identities = 32/68 (47%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEK 75
D YE+L V K A+ E+I+KA+ KL+ HPDR +++ A EKFK + + +LSD EK
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE---AEEKFKEINEAYEVLSDPEK 57
Query: 76 RKVYDQTG 83
R YDQ G
Sbjct: 58 RAQYDQFG 65
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 66.0 bits (162), Expect = 1e-14
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSD 72
D Y++L V A+ E+I+KA+ KL+L HPD+ D A EKFK + + +LSD
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DDPEAEEKFKEINEAYEVLSD 55
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 71.3 bits (176), Expect = 2e-14
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL V + A+ ++I+KA+ KL++ HPDR DKE A EKFK + + +LSD +
Sbjct: 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDR-NPGDKE-AEEKFKEIKEAYEVLSDPQ 61
Query: 75 KRKVYDQTG 83
KR YDQ G
Sbjct: 62 KRAAYDQYG 70
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 70.0 bits (171), Expect = 7e-14
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD Y++L VD+ A+ E I+KAF +L+ HPD + +K A EKFK + + +LSD +
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPD-LHPGNKAEAEEKFKEISEAYEVLSDPQ 61
Query: 75 KRKVYDQTGTLE 86
KR+ YDQTGT++
Sbjct: 62 KRRQYDQTGTVD 73
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 64.2 bits (157), Expect = 8e-14
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
D YE+L V + A+ ++I+KA+ KL+L HPD+ DKE A EKFK + + +LSD E
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP-GDKEEAEEKFKEINEAYEVLSDPE 59
Query: 75 K 75
K
Sbjct: 60 K 60
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 69.1 bits (169), Expect = 2e-13
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL VD+ A ++I+KA+ KL+ HPD EE A EKFK + +++LSD E
Sbjct: 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG---AEEKFKEISEAYAVLSDDE 61
Query: 75 KRKVYDQTG 83
KR+ YDQ G
Sbjct: 62 KRQRYDQFG 70
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 67.5 bits (165), Expect = 6e-13
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD YEVL ++K A+ ++I+KAF KL++ HPD+ + +KE A EKFK + + +LSD +
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDK-NKGNKE-AEEKFKEINEAYQVLSDPQ 61
Query: 75 KRKVYDQTGT 84
K+ YDQ GT
Sbjct: 62 KKAQYDQFGT 71
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 67.1 bits (164), Expect = 8e-13
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD Y+ L V A+ E+I+KA+ KL+ +HPD A E+FK + H +LSD
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDA--NPGDPAAEERFKAVSEAHDVLSDPA 66
Query: 75 KRKVYDQTGTL 85
KRK YD+T L
Sbjct: 67 KRKEYDETRRL 77
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 66.8 bits (163), Expect = 1e-12
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEK 75
D YE+L V +TA+ ++I+ A+ KL+L HPDR E+ A EKF + +++LSD EK
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKG---AAEKFAQINEAYAVLSDAEK 59
Query: 76 RKVYDQTGTLE 86
R YD+ GT
Sbjct: 60 RAHYDRFGTAP 70
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 66.7 bits (163), Expect = 1e-12
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD YE+L V + AT E+I+KA+ +L+ HPD ++ E A EKFK + + +LSD E
Sbjct: 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPD--FNKNPE-AEEKFKEINEAYQVLSDPE 59
Query: 75 KRKVYDQTG 83
KRK+YDQ G
Sbjct: 60 KRKLYDQFG 68
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 66.4 bits (162), Expect = 2e-12
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD YE+L VD+ AT E+I+KA+ +L+ HPD + DKE A +KFK + + ILSD +
Sbjct: 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPD-LNPGDKE-AEQKFKEINEAYEILSDPQ 62
Query: 75 KRKVYDQTG 83
KR YDQ G
Sbjct: 63 KRAQYDQFG 71
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 65.9 bits (161), Expect = 2e-12
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL V K+A+ ++I+KA+ KLS HPD EE A EKFK + + +LSD +
Sbjct: 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG---ADEKFKEISEAYEVLSDDQ 60
Query: 75 KRKVYDQTG 83
KR YDQ G
Sbjct: 61 KRAQYDQFG 69
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 64.9 bits (158), Expect = 4e-12
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL V KTAT ++I+KA+ K ++ HPD+ DKE A EKFK + +LSD +
Sbjct: 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDK-NPGDKE-AEEKFKEAAEAYDVLSDPD 62
Query: 75 KRKVYDQTG 83
KR YDQ G
Sbjct: 63 KRSRYDQFG 71
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 64.9 bits (158), Expect = 5e-12
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDV 73
T+D YE+L + K A+ E I+KA+ KL++ HPD+ E D E EKFK + +++LSD
Sbjct: 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAE---EKFKEISEAYAVLSDA 60
Query: 74 EKRKVYDQTG 83
EKR YD+ G
Sbjct: 61 EKRAQYDRFG 70
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 63.7 bits (155), Expect = 1e-11
Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEK 75
D Y +L V KTA+PE+I+KA+ KL++ HPD+ D E A ++FK + + +LSD +K
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDK-NPGDAE-AEKRFKEVSEAYEVLSDAQK 59
Query: 76 RKVYDQTG 83
R+ YD+ G
Sbjct: 60 RESYDRYG 67
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 63.3 bits (154), Expect = 2e-11
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD YE+L V + AT E+I++A+ +L HPDR E KE A +KFK + + +LSD +
Sbjct: 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKE-AEQKFKEIQEAYEVLSDPQ 62
Query: 75 KRKVYDQTG 83
KR +YD+ G
Sbjct: 63 KRAMYDRFG 71
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 62.9 bits (153), Expect = 2e-11
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 10 KYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSI 69
K Y KD Y+VL V K AT +I+KA+ KL+ HPD + A E+FK + + +
Sbjct: 4 KDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPD--ANKGDAKAEERFKEISEAYDV 61
Query: 70 LSDVEKRKVYDQTGTL 85
LSD +KRK YD+ +L
Sbjct: 62 LSDEKKRKEYDEARSL 77
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 62.5 bits (152), Expect = 2e-11
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YE+L V + A+ E+I+K++ KL++ HPDR DKE A E FK + +LSD +
Sbjct: 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDR-NPGDKE-AEELFKEAAEAYEVLSDPK 61
Query: 75 KRKVYDQTG 83
KR +YDQ G
Sbjct: 62 KRGIYDQYG 70
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 62.4 bits (152), Expect = 3e-11
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D Y +L V + A+ +I++A+ KL+ +HPD V +++ A EKFK + + + +LSD E
Sbjct: 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPD-VNPDEE--AQEKFKEISVAYEVLSDPE 59
Query: 75 KRKVYDQTG 83
KR++ D G
Sbjct: 60 KRRIVDLGG 68
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 62.1 bits (151), Expect = 4e-11
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL V ++A ++I+KA+ KL+L HPD+ ++KE A E FK + + +LS+ +
Sbjct: 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDK-NPDNKE-AEEHFKEVNEAYEVLSNDD 60
Query: 75 KRKVYDQTG 83
KR+ YDQ G
Sbjct: 61 KRRRYDQFG 69
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 60.9 bits (148), Expect = 1e-10
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+ Y+ L V K A+ ++I+KA+ KLS HPD E E EK+K + + LSD +
Sbjct: 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAE---EKYKEVQEAYETLSDPQ 60
Query: 75 KRKVYDQTGT 84
KR YDQ G
Sbjct: 61 KRAAYDQYGA 70
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 60.3 bits (146), Expect = 1e-10
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD Y +L V K A+ ++I+KAF KL+ HPD E EKFK + +++LSD E
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAE---EKFKEINEAYTVLSDPE 60
Query: 75 KRKVYDQTGT 84
KR++YD GT
Sbjct: 61 KRRIYDTYGT 70
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 59.8 bits (144), Expect = 1e-10
Identities = 47/232 (20%), Positives = 80/232 (34%), Gaps = 23/232 (9%)
Query: 12 YKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILS 71
D YE+L V A+ E+I+KA+ KL+L HPDR D +VA EKFK + + ILS
Sbjct: 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDR-NPGDPKVAEEKFKEINEAYEILS 61
Query: 72 DVEKRKVYDQ--------------TGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDII 117
D E+R YD+ + E + +W + + D++
Sbjct: 62 DPERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLL 121
Query: 118 NYETKYKGSAEEINDFKRAY---VQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEE 174
+ +A + + A D+ + + + K
Sbjct: 122 SRGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEALAGVKKAVARLLGKALKST 181
Query: 175 VPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSS 226
+ A + K R K + K + K+ ++ G D
Sbjct: 182 IKA-----GALEGKALRLKGLLKSARGALGKARLKELSKRHPPFALEGDDKY 228
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 59.4 bits (144), Expect = 3e-10
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL V + A+ ++I+KA+ KL+L HPDR D A +KFK + +L D E
Sbjct: 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDR--NPDNPEAEQKFKEAAEAYEVLRDAE 61
Query: 75 KRKVYDQTG 83
KR YD+ G
Sbjct: 62 KRARYDRFG 70
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 59.1 bits (143), Expect = 5e-10
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 6/70 (8%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDV 73
+ LYEVLN+ K T +I+KA+ KL++ HPD+ + EKFK + + +LSD
Sbjct: 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDP------EKFKEISRAYEVLSDP 80
Query: 74 EKRKVYDQTG 83
EKRK+YD+ G
Sbjct: 81 EKRKIYDEYG 90
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 58.0 bits (140), Expect = 9e-10
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSD 72
K KD YEVL V KTA+ ++IR+A+ KL+ HPD D A +K + +L D
Sbjct: 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPD---AHDKMVEINEAADVLLD 58
Query: 73 VEKRKVYDQTG 83
+KRK YDQ G
Sbjct: 59 KDKRKQYDQFG 69
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 55.4 bits (133), Expect = 6e-09
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL VD+ A+ ++++KA+ KL+ HPD D E +KFK + + LSD +
Sbjct: 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAE---DKFKEVKEAYDTLSDPQ 60
Query: 75 KRKVYDQTG 83
K+ YDQ G
Sbjct: 61 KKAHYDQFG 69
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 55.0 bits (133), Expect = 9e-09
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEV-ATEKFKILGLVHSILSDVE 74
D YE+L V + A +++++A+ +L+ HPD +KE A ++FK + + +LSD E
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPD----VNKEPGAEDRFKEINRAYEVLSDPE 59
Query: 75 KRKVYDQTG 83
R YDQ G
Sbjct: 60 TRARYDQFG 68
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 54.3 bits (130), Expect = 2e-08
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDV 73
++D Y++L V KTA+ ++KA+ KL+ HPD +D E +KFK + + +L D
Sbjct: 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE---KKFKEINAAYDVLKDE 58
Query: 74 EKRKVYDQTG 83
+KR YD+ G
Sbjct: 59 QKRAAYDRFG 68
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 53.8 bits (129), Expect = 2e-08
Identities = 28/66 (42%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEKRK 77
Y++L V K+A E+I+ A+ KL++ HPD+ + +KE + EKFK + IL D +KR+
Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDK-NKGNKE-SEEKFKEATEAYEILRDPKKRQ 64
Query: 78 VYDQTG 83
YDQ G
Sbjct: 65 AYDQFG 70
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 52.8 bits (126), Expect = 6e-08
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVEKRK 77
YE+L V+K + E I+K++ KL+L HPDR DKE A EKFK++ + +LSD +KR
Sbjct: 6 YEILEVEKHSNQETIKKSYRKLALKYHPDR-NAGDKE-AEEKFKLINEAYGVLSDEKKRA 63
Query: 78 VYDQTG 83
+YD+ G
Sbjct: 64 LYDRYG 69
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 47.9 bits (114), Expect = 2e-06
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD Y ++ V T + I+ A+ +L+ HPD E D E +FK + +LSD +
Sbjct: 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAE---ARFKEVAEAWEVLSDEQ 60
Query: 75 KRKVYDQ 81
+R YDQ
Sbjct: 61 RRAEYDQ 67
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 47.3 bits (112), Expect = 3e-06
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YE+L + K A+ ++I+KA+ K+++ HPD+ + + A FK + +L D
Sbjct: 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDK--NKGNKEAESIFKEATEAYEVLIDDN 60
Query: 75 KRKVYDQTG 83
KR YD+ G
Sbjct: 61 KRAQYDRFG 69
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 44.4 bits (104), Expect = 4e-05
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YEVL +D+ A ++I+KAF KL+ HPDR D A F + + +LS+ +
Sbjct: 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD---AASIFAEINEANDVLSNPK 58
Query: 75 KRKVYDQTG--TLEDEDDEAIFKSDI 98
KR YD+ G ++ EDD F++D+
Sbjct: 59 KRANYDKYGHDGVDREDDFD-FQADV 83
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 43.0 bits (101), Expect = 1e-04
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 11 YYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRV---TEEDKEVATEKFKILGLVH 67
Y + D YE+L +D+ + I+K + LS+ HPD+ E + EK+K + +
Sbjct: 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAY 153
Query: 68 SILSDVEKRKVYDQTGTLE 86
+L+D ++R+ Y GT +
Sbjct: 154 GLLTDKKRRENYLNYGTPD 172
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 38.1 bits (88), Expect = 0.003
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 10 KYYKTKDLYEVLNVDK---TATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLV 66
K +K DLY +L + K A P QI KA K HPD+ + E FK++
Sbjct: 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKA 97
Query: 67 HSILSDVEKRKVYDQTGTLED 87
+L D + R YD D
Sbjct: 98 REVLGDRKLRLQYDSNDFDAD 118
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 32.1 bits (73), Expect = 0.093
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPD 46
Y++LN+ TA+ E+IR+A +L L HPD
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 32.1 bits (74), Expect = 0.23
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-----VTEEDKEVATEK 59
+D Y+VL V ++ ++I++A+ KL HPD+ + E E+A EK
Sbjct: 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEK 249
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 32.7 bits (74), Expect = 0.23
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 186 KSKRNRRKRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSS 226
K+KR ++ E+ E+ EKEK ++ R++ R + A SS
Sbjct: 587 KAKREAEQKAREEREREKEKEKEREREREREAERAAKASSS 627
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 29.6 bits (67), Expect = 1.1
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 185 AKSKRNRRKRKFEKEEKLFEKEKAKDERRKKSGVR 219
A+ K + +F EE ++E +
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKE 191
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 1.1
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 171 DKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKK 215
DK + P+ K ++ + +R + +++ KE+K K K ++E++KK
Sbjct: 537 DKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKK 581
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that stevor
and rif are members of a larger superfamily that code
for variant surface antigens.
Length = 290
Score = 30.0 bits (68), Expect = 1.3
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 22/111 (19%)
Query: 165 IIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKE-EKLFEKEKA-------KDERRK-- 214
++ + F ++ K KR + K + +KE +K+ K+K K E+
Sbjct: 40 VMDKFNRQTS-QRFKEYDERMKDKRQKCKEQCDKEIQKIILKDKLEKKSLAEKVEKECLR 98
Query: 215 -----------KSGVRNSGADSSMDLIAAIQSKNATRESGFIGGIANLEAK 254
KSG+ + A + A + E+G G+ L+
Sbjct: 99 CGFGLGGGVAPKSGLYGAIAVNEWTKAALCAAIQKGIEAGIAAGLKKLKGL 149
>gnl|CDD|227839 COG5552, COG5552, Uncharacterized conserved protein [Function
unknown].
Length = 88
Score = 28.0 bits (62), Expect = 1.4
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 15 KDLYEVLNVDKTATPEQIRKA----FYKLSLVVHPDRVTEEDKEVATE 58
+++ E+ N D ATP ++R A KLS HP E E A
Sbjct: 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVA 50
>gnl|CDD|239172 cd02771, MopB_NDH-1_NuoG2-N7, MopB_NDH-1_NuoG2-N7: The second
domain of the NuoG subunit (with a [4Fe-4S] cluster, N7)
of the NADH-quinone oxidoreductase/NADH dehydrogenase-1
(NDH-1) found in various bacteria. The NDH-1 is the
first energy-transducting complex in the respiratory
chain and functions as a redox pump that uses the redox
energy to translocate H+ ions across the membrane,
resulting in a significant contribution to energy
production. In Escherichia coli NDH-1, the largest
subunit is encoded by the nuoG gene, and is part of the
14 distinct subunits constituting the functional enzyme.
The NuoG subunit is made of two domains: the first
contains three binding sites for FeS clusters (the fer2
domain), the second domain (this CD), is of unknown
function or, as postulated, has lost an ancestral
formate dehydrogenase activity that became redundant
during the evolution of the complex I enzyme. Unique to
this group, compared to the other prokaryotic and
eukaryotic groups in this domain protein family
(NADH-Q-OR-NuoG2), is an N-terminal [4Fe-4S] cluster
(N7/N1c) present in the second domain. Although only
vestigial sequence evidence remains of a molybdopterin
binding site, this protein domain belongs to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 472
Score = 29.7 bits (67), Expect = 1.8
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 210 DERRKKSGVRNSGA------DSSMDLIAAIQSKNATRESGFIGGIANLEAKYELTKFAR 262
+R + +R G + ++D+ AA + + G A+ E+ Y L K
Sbjct: 52 RDRLTQPLIRRGGTLVPVSWNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVG 110
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 28.6 bits (65), Expect = 1.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 159 EDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKK 215
+D + L+DK+E+ A++K ++K EK + EK+KAK E K
Sbjct: 52 KDLKESLEAALLDKKELKAWEK-----------AEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 29.2 bits (66), Expect = 2.3
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 29/138 (21%)
Query: 65 LVHSILSDVEKR---KVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYET 121
L S+ E+R K Y+ TL + A IDW Y ++L +E +I +
Sbjct: 164 LAKISWSEEERRDPEKTYNPM-TLAELQKLA---PGIDWKAYLEALGLPSEDEKVIVTQP 219
Query: 122 KY-KGSAEEINDFK----RAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVP 176
Y K + + + Y+ L+ L P+ + +R
Sbjct: 220 DYLKKLNKLLASTPLRTLKNYLI----WRLLDSLAPYLS----EEFRDANFF-------- 263
Query: 177 AFDKFLNEAKSKRNRRKR 194
+ K L+ K +R R KR
Sbjct: 264 -YGKTLSGTKEQRPRWKR 280
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 29.2 bits (65), Expect = 2.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 184 EAKSKRNRRKRKFEKEEKLFEKEKAK 209
E + N RK F KEE++FEKEK +
Sbjct: 459 EMERMINNRKELFRKEEEVFEKEKQR 484
>gnl|CDD|235888 PRK06928, PRK06928, pyrroline-5-carboxylate reductase; Reviewed.
Length = 277
Score = 28.2 bits (63), Expect = 3.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 40 SLVVHPDRVTEEDKEVATEKFKILGLVHSI 69
SLV H + V E +K E V +I
Sbjct: 131 SLVAHAETVNEANKSRLEETLSHFSHVMTI 160
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 28.4 bits (64), Expect = 4.2
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 158 EEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKKSG 217
EE ++I +L K + P+ K +K +R K EKE++ K K K R
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKE---KPKVKKRHRDTKN 421
Query: 218 V 218
+
Sbjct: 422 I 422
>gnl|CDD|222724 pfam14385, DUF4416, Domain of unknown function (DUF4416). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 176 and 187 amino
acids in length. There is a conserved DPG sequence
motif.
Length = 163
Score = 27.5 bits (62), Expect = 4.2
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 26/81 (32%)
Query: 142 GDMDLIFELVPFTHPSE------EDRYRQII--QDLIDKEEVPAFDKFLNEAKSKRNRRK 193
G +D +PF + YR+ + + LI EE+ NE
Sbjct: 31 GPIDYESPPLPFDYTDYYEKEMGPGLYRRFVSFERLIHPEELADIKLETNE--------- 81
Query: 194 RKFEKEEKLFEKEKAKDERRK 214
E A+D +RK
Sbjct: 82 ---------IEDAFAEDGKRK 93
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 28.0 bits (62), Expect = 4.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 156 PSEEDRYRQIIQDLIDKEEVPA--FDKFLNEAKSKRNRRKRKFEKEEKLFE 204
+ DR +++ + L KE A +DK+L E N RKR +++E+L +
Sbjct: 36 VAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLK 86
>gnl|CDD|233480 TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This
clade of sequences is closely related to MiaB, a
modifier of isopentenylated adenosine-37 of certain
eukaryotic and bacterial tRNAs (see TIGR01574). Sequence
alignments suggest that this equivalog performs the same
chemical transformation as MiaB, perhaps on a different
(or differently modified) tRNA base substrate. This
clade is a member of a subfamily (TIGR00089) and spans
low GC Gram positive bacteria, alpha and epsilon
proteobacteria, Campylobacter, Porphyromonas, Aquifex,
Thermotoga, Chlamydia, Treponema and Fusobacterium
[Protein synthesis, tRNA and rRNA base modification].
Length = 414
Score = 28.1 bits (63), Expect = 5.0
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 152 PFTHPSEEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAK 209
P T S + + + I KE V + L E + +K ++ E L EKEKA
Sbjct: 331 PGTPAS---TMKDKVPETIKKERVKRLKE-LAEKNYQEFLKKNIGKELEVLVEKEKAG 384
>gnl|CDD|220232 pfam09421, FRQ, Frequency clock protein. The frequency clock
protein, is the central component of the frq-based
circadian negative feedback loop, regulates various
aspects of the circadian clock in Neurospora crassa.
This protein has been shown to interact with itself via
a coiled-coil.
Length = 989
Score = 28.4 bits (63), Expect = 5.0
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 154 THPSEEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERR 213
H S D YR +I DL + + L E + + ++EKLFE + +R
Sbjct: 125 AHSSSADDYRSVIDDLTVE------IQRLKEELKRYKQFGSDMMRKEKLFEIKVHGLPKR 178
Query: 214 KK 215
KK
Sbjct: 179 KK 180
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 27.8 bits (61), Expect = 6.7
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 158 EEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKKS 216
E R + I+D I KE + + + K + KEE++ +KEK +++R +K+
Sbjct: 1009 PECREKHEIKDRIVKERI-------KDQEEKERMESLQRAKEEEIGKKEKEREQRIRKT 1060
>gnl|CDD|204401 pfam10119, MethyTransf_Reg, Predicted methyltransferase regulatory
domain. Members of this family of domains are found in
various prokaryotic methyltransferases, where they
regulate the activity of the methyltransferase domain.
Length = 86
Score = 26.1 bits (58), Expect = 6.9
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 127 AEEINDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVPAFDKFLNEAK 186
A ++ Y+ GD D + + D +E+ D FL
Sbjct: 25 AADLARHGLQYL---GDADPHDSYDELYLEHVAEAALAALPDPRLREQ--YLD-FL---- 74
Query: 187 SKRNRRKRK 195
NR+ R+
Sbjct: 75 --VNRQFRR 81
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 27.5 bits (62), Expect = 7.4
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 47 RVTEEDKEVATEKFKILGLVHSI--LSDVEKRKVYDQTGTLEDEDDEAIF 94
+VTEED A EK +I+ L + L EK + L+ DE
Sbjct: 269 KVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTT 318
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase.
Length = 498
Score = 27.6 bits (61), Expect = 8.2
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 94 FKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEEINDF 133
++ ++ W W LYK E+ +NY KG ++ +N+F
Sbjct: 230 YQDELLWAAAW--LYKATGEKKYLNYVISNKGWSQAVNEF 267
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 26.6 bits (59), Expect = 8.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 186 KSKRNRRKRKFEKEEKLFEKEKAKDERRKK 215
K+K R+ K + +++ EKEK K+ER K
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEERFMK 96
>gnl|CDD|222469 pfam13949, ALIX_LYPXL_bnd, ALIX V-shaped domain binding to HIV.
The binding of the LYPxL motif of late HIV p6Gag and
EIAV p9Gag to this domain is necessary for viral
budding.This domain is generally central between an
N-terminal Bro1 domain, pfam03097 and a C-terminal
proline-rich domain. The retroviruses thus used this
domain to hijack the ESCRT system of the cell.
Length = 292
Score = 27.3 bits (61), Expect = 9.0
Identities = 12/65 (18%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 163 RQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDER-RKKSGVRNS 221
+ +++ + + ++ L++ R + ++ ++L ++E+++DE+ R K G R +
Sbjct: 12 LEKAEEIRSEGGIERLERSLDDLPELSQRNEEILDEIKELLDEEESEDEQLRAKYGERWT 71
Query: 222 GADSS 226
SS
Sbjct: 72 RPPSS 76
>gnl|CDD|225382 COG2826, Tra8, Transposase and inactivated derivatives, IS30 family
[DNA replication, recombination, and repair].
Length = 318
Score = 27.0 bits (60), Expect = 9.9
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 154 THPSEEDRYRQIIQDLID-KEEVPAFDKFLNEAKS------KRNRRKRKFEKEEKLFEKE 206
H + +RY I+ L+ K + K LN S KRNR + + +
Sbjct: 6 KHLTLFERYE--IERLLKAKMSIREIAKQLNRHHSTISRELKRNRTRDIYSAVKAQERYR 63
Query: 207 KAKDERRKKS 216
+ R +K
Sbjct: 64 MLRRRRIRKL 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.132 0.364
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,704,080
Number of extensions: 1361261
Number of successful extensions: 2123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2009
Number of HSP's successfully gapped: 208
Length of query: 264
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 169
Effective length of database: 6,723,972
Effective search space: 1136351268
Effective search space used: 1136351268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.0 bits)