RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18223
(264 letters)
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 57.8 bits (139), Expect = 9e-12
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 7 LCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR----VTEEDKEVATEKFKI 62
+ + KD Y +L D +A +++ + KL L+ HPD+ V E +KF
Sbjct: 8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE 67
Query: 63 LGLVHSILSDVEKRKVYDQTG 83
+ IL + E +K YD
Sbjct: 68 IDQAWKILGNEETKKKYDLQR 88
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 55.8 bits (134), Expect = 4e-11
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
+D YE+L V KTA +IRKA+ +L++ HPDR + + A KFK + + +L+D +
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR--NQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 75 KRKVYDQTG 83
KR YDQ G
Sbjct: 61 KRAAYDQYG 69
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 56.0 bits (134), Expect = 7e-11
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSIL 70
++ L ++L ++++A +RKA+ K HPD+ +E+K K + ++ +
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK------MKKMNTLYKKM 59
Query: 71 SDVEKRKVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAE 128
D K G D + + +D W+ + EE++ E E
Sbjct: 60 EDGVKYAHQPDFGGFWDATEIPTYGTD-----EWEQWWNAFNEENLFCSEEMPSSDDE 112
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 54.7 bits (131), Expect = 9e-11
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
KD Y+ L + + A+ E+I++A+ + +L HPD+ + A EKFK + + +LSD
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDK---NKEPGAEEKFKEIAEAYDVLSDPR 59
Query: 75 KRKVYDQTG 83
KR+++D+ G
Sbjct: 60 KREIFDRYG 68
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 51.2 bits (122), Expect = 1e-09
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 16 DLYEVLNVDKTAT--PEQIRKAFYKLSLVVHPDRVT---EEDKEVATEKFKILGLVHSIL 70
D + + + + + F L HPD+ + ++ A ++ + L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 71 SDVEKRKVYD 80
R Y
Sbjct: 62 RHPLMRAEYL 71
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 49.6 bits (118), Expect = 9e-09
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEE-DKEVATEKFKILGLVHSILSDV 73
+ ++ + + TPEQ++K + K LVVHPD+ T + ++ A F L S +
Sbjct: 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 92
Query: 74 EKRKVY 79
++ +Y
Sbjct: 93 GQKPLY 98
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 46.2 bits (109), Expect = 1e-07
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSILSDVE 74
K++ V+ + +K +L L HPD+ E E FK L + L E
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIA-NEVFKHLQNEINRL---E 71
Query: 75 KRKVYDQTG 83
K+ DQ
Sbjct: 72 KQAFLDQNA 80
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 43.5 bits (102), Expect = 9e-07
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEEDKEVATEKFKILGLVHSIL 70
+ L E+L + + ++++A+ + SL++HPD+ + + L +
Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG------SHALMQELNSLWGTF 62
Query: 71 SDVEKRKVYDQTGT 84
+ GT
Sbjct: 63 KTEVYNLRMNLGGT 76
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 35.3 bits (81), Expect = 0.005
Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 11/146 (7%)
Query: 109 KDVTEEDIINYETKYKGSAEEINDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQD 168
D+ + + E + ++ + P T P+ +Y D
Sbjct: 46 NDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDD 105
Query: 169 LIDKEEVPAFDKFLNEAKSKRNRRKRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSSMD 228
++ K + A R+ + + +E++ + K A +D
Sbjct: 106 MVKK-----SNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKID---DHASYIVD 157
Query: 229 LIAAIQSKNATRESGFI---GGIANL 251
L AI R + G IAN
Sbjct: 158 LARAIAYNTGERMLLIVENNGAIANF 183
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 94
Score = 25.5 bits (56), Expect = 3.2
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 48 VTEEDKEVATEKFKILGLVHSILSDVEKRKVYDQTGTLED 87
V+ E+ +KF V+SIL V + Y + LE
Sbjct: 1 VSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLES 40
>d2gica1 a.260.1.1 (A:2-422) Nucleoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 421
Score = 25.9 bits (57), Expect = 6.1
Identities = 5/61 (8%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 61 KILGLVHSILSDVEKR-----KVYDQTGTLEDEDDEAIFKSD--IDWTMYWKSLYKDVTE 113
+ +D+ ++ Y + A + ++W +++ + T
Sbjct: 331 LLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTP 390
Query: 114 E 114
+
Sbjct: 391 D 391
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.8 bits (56), Expect = 6.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 197 EKEEKLFEK------EKAKDERRKKSGVRNSGADSSMDLIAA 232
E+ E L ++ EKA+ +R K V + S I +
Sbjct: 4 EEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIIS 45
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 25.4 bits (55), Expect = 7.6
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 131 NDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVPAFDKF 181
DF + + + E VPF + + K+ F KF
Sbjct: 238 IDFGHILGNYKSFLGINKERVPFVLTPDF----LFVMGTSGKKTSLHFQKF 284
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 23.4 bits (51), Expect = 8.0
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 1 MKGLLQLCEKYYKTKDLYEVLNVDKTATPEQIRKAF 36
+KGLL + K V N+ K TPE+IRK F
Sbjct: 27 IKGLLDVTCKT--------VANMIKGKTPEEIRKTF 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.364
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 982,206
Number of extensions: 48507
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 43
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)