BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18225
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VBI|A Chain A, Crystal Structure Of Type 2 MalateLACTATE DEHYDROGENASE
FROM THERMUS Thermophilus Hb8
pdb|1X0A|A Chain A, Crystal Structure Of Type Ii MalateLACTATE DEHYDROGENASE
FROM THERMUS Thermophilus Hb8
Length = 344
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 1 TGYRLARGYKDQALETDRPEDISHLVFVVHGMGQKMDSGRII-KNATQFRESVMWLKKKY 59
TG +A G E DRP+D+ H + +D GR + K A R +W K
Sbjct: 238 TGAGVAHGIGRMYDEWDRPQDVGHFLLA-------LDPGRFVGKEAFLERMGALWQALKA 290
Query: 60 FASSKLRAEFF 70
+ E F
Sbjct: 291 TPPAPGHEEVF 301
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 36 MDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDGDIV 85
M SGR +++ +F + K KYF K FF +++ DG I+
Sbjct: 165 MTSGRTMESTKEF-----FTKHKYFGLKKENVIFFQQGMLPAMSFDGKII 209
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 36 MDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDGDIV 85
M SGR +++ +F + K KYF K FF +++ DG I+
Sbjct: 165 MTSGRTMESTKEF-----FTKHKYFGLKKENVIFFQQGMLPAMSFDGKII 209
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 202 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 234
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 202 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 234
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 201 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 233
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 202 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 234
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 211 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 243
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 210 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 242
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 219 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 251
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 47 QFRESVMWLKKKYFASSKLRAEFFPVEWRSSLA 79
+FR+ + W KK+ + R +F EWR +A
Sbjct: 201 EFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,643,670
Number of Sequences: 62578
Number of extensions: 158325
Number of successful extensions: 332
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 12
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)