RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18225
(166 letters)
>gnl|CDD|138553 PRK11391, etp, phosphotyrosine-protein phosphatase; Provisional.
Length = 144
Score = 30.0 bits (67), Expect = 0.37
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 96 LRHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIA 149
++H +A+A D+ + LT E+ R Y + +A H A+++ IA
Sbjct: 41 VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIA 94
>gnl|CDD|214876 smart00873, B3_4, B3/4 domain. This domain is found in tRNA
synthetase beta subunits as well as in some non tRNA
synthetase proteins.
Length = 174
Score = 28.0 bits (63), Expect = 1.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 39 GRIIKNATQFRESVMWLKKK 58
GR+I+ R S WL+++
Sbjct: 6 GRVIRGVKNTRPSPEWLQER 25
>gnl|CDD|218405 pfam05057, DUF676, Putative serine esterase (DUF676). This family
of proteins are probably serine esterase type enzymes
with an alpha/beta hydrolase fold.
Length = 214
Score = 27.1 bits (60), Expect = 4.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 135 VARNPNHNAKISIIAHSLGCVIV 157
++ + KIS + HSLG +I
Sbjct: 67 FVQDGSDGKKISFVGHSLGGLIA 89
>gnl|CDD|219190 pfam06821, Ser_hydrolase, Serine hydrolase. Members of this family
have serine hydrolase activity. They contain a conserved
serine hydrolase motif, GXSXG/A, where the serine is a
putative nucleophile. This family has an alpha-beta
hydrolase fold. Eukaryotic members of this family have a
conserved LXCXE motif, which binds to retinoblastomas.
This motif is absent from prokaryotic members of this
family.
Length = 171
Score = 26.5 bits (59), Expect = 6.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 147 IIAHSLGCVIV 157
++AHSLGC+ V
Sbjct: 59 LVAHSLGCLAV 69
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 26.7 bits (59), Expect = 6.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 20 EDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSS 77
+ L V+ G D R+ A R SV WL +FA +++ A + P+ WR S
Sbjct: 30 ALVGRLAAVLRRRGCV-DGERL---AVLARNSV-WLVALHFACARVGAIYVPLNWRLS 82
>gnl|CDD|218589 pfam05431, Toxin_10, Insecticidal Crystal Toxin, P42. Family of
Bacillus insecticidal crystal toxins. Strains of
Bacillus that have this insecticidal activity use a
binary toxin comprised of two proteins, P51 and P42
(this family). Members of this family are highly
conserved between strains of different serotypes and
phage groups.
Length = 199
Score = 26.7 bits (59), Expect = 6.4
Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 42 IKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDG--DIVESITQLNVLNLRHM 99
I T+ + + ++ KKY + + P + + + + + + +N LN +
Sbjct: 48 ISLNTRIKTTPYYILKKYQYWHRAWSSILPAHSKKTYREEWGIEENQQTSMINTLNFQ-- 105
Query: 100 LNASAMDIMYYTSPIYGSEIQQGLTDELNRLYS 132
+ A + + + I+ +T+EL YS
Sbjct: 106 IGADFG--LKFVVGGGTTGIKTQITEELKTEYS 136
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 27.0 bits (59), Expect = 6.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 103 SAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC--VIVY 158
+A+DI + + + IQ LTD ++ +M +IAH LGC V VY
Sbjct: 1550 TALDIHWLDHILAQANIQMWLTDSASKTINMINEATVEDVKAAYLIAHFLGCKGVTVY 1607
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 26.5 bits (59), Expect = 7.2
Identities = 16/87 (18%), Positives = 30/87 (34%)
Query: 74 WRSSLALDGDIVESITQLNVLNLRHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSM 133
R L+ D+ + T L H L S ++ Y S + +EL +
Sbjct: 199 LRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDSQTTEKLNLLQIINELFNNDNS 258
Query: 134 FVARNPNHNAKISIIAHSLGCVIVYDV 160
F + +P ++ G V ++
Sbjct: 259 FFSCDPTKGRYLAAALIFRGDVFQSEI 285
>gnl|CDD|193454 pfam12981, DUF3865, Domain of Unknown Function with PDB structure
(DUF3865). Family based of PDB:3B5P encoded by
ZP_00108531 from nitrogen-fixing cyanobacterium Nostoc
punctiforme pcc 73102 is a CADD-like protein of unknown
function. Superposition between protein structures
encoded by CT610 from Chlamydia trachomatis (PDB code
1rwc), pyrroloquinolinquinone synthase C (PqqC, PDB code
1otv) and ZP_00108531 revealed that putative active
sites in CT610 and ZP_00108531 are identical. ( REF:
http://www.topsan.org/Proteins/JCSG/3B5P).
Length = 231
Score = 26.1 bits (57), Expect = 8.8
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 54 WLKKKYFASSKLRAEFFPVEWRSSLALDGDIVESITQLNVL--NLRHMLNASAMDIMYYT 111
L + Y A S ++S A I I Q ++ L + +
Sbjct: 11 LLAQDYVAFSINNNPVVSHISQASFA---QIAYVIQQYSIFPKELVGFTELARRKALGAG 67
Query: 112 SPIYGSEIQQGLTDELN 128
E+ + + +E+
Sbjct: 68 WNGVAEELLENINEEMG 84
>gnl|CDD|216642 pfam01674, Lipase_2, Lipase (class 2). This family consists of
hypothetical C. elegans proteins and lipases. Lipases or
triacylglycerol acylhydrolases hydrolyse ester bonds in
triacylglycerol giving diacylglycerol, monoacylglycerol,
glycerol and free fatty acids. Lipase estA is a
extracellular lipase from B. subtilis 168.
Length = 218
Score = 26.1 bits (58), Expect = 9.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 142 NAKISIIAHSLGCVIVYDVITG 163
AK+ I+AHS+G I I G
Sbjct: 74 GAKVDIVAHSMGVPIARKAILG 95
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.404
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,520,409
Number of extensions: 748692
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 18
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)