RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18225
         (166 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 28/155 (18%)

Query: 12  QALETDRPEDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEF-F 70
           QAL   RP        ++ G+     SG   K          W+      S K++ +  F
Sbjct: 142 QALLELRPAKN----VLIDGVL---GSG---KT---------WVALDVCLSYKVQCKMDF 182

Query: 71  PVEWRSSLALDGDIVESITQLNVLNLRHMLNASAMDIMYYTSPIYGSEIQQGLTDEL-NR 129
            + W  +L         +  L  L  +   N ++         +    IQ  L   L ++
Sbjct: 183 KIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 130 LY--SMFVARNPNHNAKISIIAHSLGCVIVYDVIT 162
            Y   + V  N   NAK    A +L C I+  + T
Sbjct: 242 PYENCLLVLLNVQ-NAKA-WNAFNLSCKIL--LTT 272


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.016
 Identities = 27/161 (16%), Positives = 49/161 (30%), Gaps = 42/161 (26%)

Query: 17  DRPEDISHLV-----FVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLR----- 66
           D P   + LV     +V       ++         QF + V+ L    F +  L      
Sbjct: 52  DEPTTPAELVGKFLGYVSS----LVEPS----KVGQFDQ-VLNLCLTEFENCYLEGNDIH 102

Query: 67  --AEFFPVEWRSSLALDGDIVESITQLNVLNLRHMLN---------ASAMDIMYYTSPIY 115
             A     E  ++L    +++++     ++  R                 +       I+
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA--IF 160

Query: 116 GSEIQQGLT----DELNRLYSMFVARNPNHNAKISIIAHSL 152
           G    QG T    +EL  LY  +   +      I   A +L
Sbjct: 161 G---GQGNTDDYFEELRDLYQTY---HVLVGDLIKFSAETL 195



 Score = 29.2 bits (65), Expect = 0.81
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 21/100 (21%)

Query: 59  YFASSKLRAEFF-----PVEWRSSLALDGDIVESITQLNVLNLRHMLNASAMDIMYYTSP 113
           +F +S+L+ +F      P E     A D D   +  +L    L +        +     P
Sbjct: 27  FFIASQLQEQFNKILPEPTE---GFAAD-DEPTTPAELVGKFLGY--------VSSLVEP 74

Query: 114 IYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLG 153
               +  Q L   L    + ++  N  H    ++ A  L 
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIH----ALAAKLLQ 110


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.52
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 11/39 (28%)

Query: 49 RESVMWLKKKYFASSKLRA-EFFPVEWRSSLALDGDIVE 86
          ++++    KK  AS KL A +  P     +LA+   + E
Sbjct: 19 KQAL----KKLQASLKLYADDSAP-----ALAIKATM-E 47


>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
           BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
           PSI-2; 1.72A {Homo sapiens}
          Length = 194

 Score = 27.0 bits (59), Expect = 2.7
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 133 MFVARNPNHNAKISIIAHSLGCVIV 157
            F+    + + K  II HS G +  
Sbjct: 57  PFMETELHCDEKTIIIGHSSGAIAA 81


>4fc2_A Poly(ADP-ribose) glycohydrolase; mouse, PArg; 1.91A {Mus musculus}
          Length = 521

 Score = 27.5 bits (60), Expect = 2.9
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 97  RHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC 154
           R      A+D +++   +     ++ +  ELN+ Y  F+          ++   + GC
Sbjct: 371 RRCTEIVAIDALHFRRYLDQFVPEK-VRRELNKAYCGFLRPGVPSENLSAVATGNWGC 427


>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
           residues, glycoprotein, hydrolase, lipid degradation,
           zymogen, disulf; HET: NAG BTB; 1.49A {Candida
           antarctica} PDB: 3icw_A*
          Length = 316

 Score = 26.7 bits (58), Expect = 3.7
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 95  NLRHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC 154
           N   +         + + P +     Q  T+ +    +   A +   N K+ ++  S G 
Sbjct: 85  NWIPLSAQLGYTPCWISPPPFMLNDTQVNTEYMVNAITTLYAGS--GNNKLPVLTWSQGG 142

Query: 155 VIVYDVITGW 164
           ++    +T +
Sbjct: 143 LVAQWGLTFF 152


>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
           {Rattus norvegicus} PDB: 3uel_A*
          Length = 588

 Score = 26.7 bits (58), Expect = 4.8
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 97  RHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC 154
           R      A+D +++   +     ++ +  ELN+ Y  F+          ++   + GC
Sbjct: 428 RCCTEIVAIDALHFRRYLDQFVPEK-VRRELNKAYCGFLRPGVPPENLSAVATGNWGC 484


>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
           antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
           1tcc_A*
          Length = 317

 Score = 26.3 bits (57), Expect = 5.6
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 95  NLRHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC 154
           N   +         + + P +     Q  T+ +    +   A + N   K+ ++  S G 
Sbjct: 51  NWIPLSTQLGYTPCWISPPPFMLNDTQVNTEYMVNAITALYAGSGN--NKLPVLTWSQGG 108

Query: 155 VIVYDVITGW 164
           ++    +T +
Sbjct: 109 LVAQWGLTFF 118


>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
           biodegradation, catal; HET: PG4; 1.20A {Paucimonas
           lemoignei} PDB: 2vtv_A* 2x76_A
          Length = 342

 Score = 26.0 bits (56), Expect = 6.3
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 143 AKISIIAHSLGCVIVYDVITG 163
           +++ I+AHS+G  +    +  
Sbjct: 128 SQVDIVAHSMGVSMSLATLQY 148


>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
           genomics, joint CEN structural genomics, JCSG; HET: PG4
           UNL; 1.85A {Sulfolobus solfataricus P2}
          Length = 354

 Score = 26.1 bits (56), Expect = 7.5
 Identities = 3/22 (13%), Positives = 8/22 (36%)

Query: 136 ARNPNHNAKISIIAHSLGCVIV 157
            +  +   +I +   S G +  
Sbjct: 137 IKRDSGQERIYLAGESFGGIAA 158


>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 156

 Score = 25.6 bits (56), Expect = 7.8
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 16  TDRPEDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLK 56
             + ED + LVF+V     K      IK A +    +   K
Sbjct: 87  MKKIEDNNTLVFIVDVKANKHQ----IKQAVKKLYDIDVAK 123


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,588,028
Number of extensions: 139017
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 16
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)