RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18225
         (166 letters)



>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
           antarctica), form b [TaxId: 34362]}
          Length = 317

 Score = 28.9 bits (64), Expect = 0.25
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 95  NLRHMLNASAMDIMYYTSPIYGSEIQQGLTDELNRLYSMFVARNPNHNAKISIIAHSLGC 154
           N   +         + + P +     Q  T+ +    +   A +   N K+ ++  S G 
Sbjct: 51  NWIPLSTQLGYTPCWISPPPFMLNDTQVNTEYMVNAITALYAGS--GNNKLPVLTWSQGG 108

Query: 155 VIVYDVITGW 164
           ++    +T +
Sbjct: 109 LVAQWGLTFF 118


>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 66

 Score = 24.3 bits (53), Expect = 3.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 116 GSEIQQGLTDELNRLYSMF 134
           G E QQ L  EL +L  M+
Sbjct: 29  GPEYQQDLDRELFKLKQMY 47


>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
           {Alcaligenes faecalis [TaxId: 511]}
          Length = 679

 Score = 24.7 bits (52), Expect = 7.0
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 66  RAEFFPVEWR 75
           +A F P  W 
Sbjct: 669 KAHFKPAPWN 678


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 625,621
Number of extensions: 25767
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)