BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18226
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 187/269 (69%), Gaps = 22/269 (8%)
Query: 39 DFITFPLDTAKVRLQLQGEANTKGPVKKIVLXXXXXXXXXXXXXXXXXEYKGLIGTLMTI 98
D ITFPLDTAKVRLQ+QGE ++G V+ +Y+G++GT++T+
Sbjct: 16 DLITFPLDTAKVRLQIQGE--SQGLVR----------------TAASAQYRGVLGTILTM 57
Query: 99 AKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSHISIMARVGAGMT 158
+ EGP+SL+NGL AGLQRQ+ FASVR+G+YDSVK Y + + H I +R+ AG T
Sbjct: 58 VRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK----GSEHAGIGSRLLAGST 113
Query: 159 TGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASR 218
TG LAV +AQPTDVVKVRFQAQ R RY +T++AY IAREEG +GLWKGT+ N +R
Sbjct: 114 TGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVAR 173
Query: 219 NAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNS 278
NAIVN +E+V YD+IK+ + ++ D +PCHFTSA AGFC T++ASPVDVVKTRYMNS
Sbjct: 174 NAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS 233
Query: 279 KPGTYSGAANCAAQMFSQEGFNAFYKGIM 307
G Y A +CA M +EG AFYKG M
Sbjct: 234 ALGQYHSAGHCALTMLRKEGPRAFYKGFM 262
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 187/336 (55%), Gaps = 55/336 (16%)
Query: 153 VGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGT 212
+GAG T C+A LI P D KVR Q Q G S +GL +
Sbjct: 6 LGAG-TAACIADLITFPLDTAKVRLQIQ--GES--------------------QGLVRTA 42
Query: 213 ASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVK 272
AS R + + +V P + ++AG + + V +
Sbjct: 43 ASAQYRGVLGTILTMV---------------RTEGPRSLYNGLVAGLQRQMSFASVRI-- 85
Query: 273 TRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCLAVLIAQPTDVVKV 332
G + Q +++ +A GI +R+ AG TTG LAV +AQPTDVVKV
Sbjct: 86 ------------GLYDSVKQFYTKGSEHA---GIGSRLLAGSTTGALAVAVAQPTDVVKV 130
Query: 333 RFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKE 392
RFQAQ R RY +T++AY IAREEG +GLWKGT+ N +RNAIVN +E+V YD+IK+
Sbjct: 131 RFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKD 190
Query: 393 FFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFS 452
+ ++ D +PCHFTSA AGFC T++ASPVDVVKTRYMNS G Y A +CA M
Sbjct: 191 TLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLR 250
Query: 453 QEGFNAFYKGFTPSFCRLVTWNIVLWLSYEQIKLAI 488
+EG AFYKGF PSF RL +WN+V++++YEQ+K A+
Sbjct: 251 KEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 69/192 (35%), Gaps = 31/192 (16%)
Query: 44 PLDTAKVRLQLQGEANTKGPVKKIVLXXXXXXXXXXXXXXXXXEYKGLIGTLMTIAKKEG 103
P D KVR Q Q A Y+ + TIA++EG
Sbjct: 124 PTDVVKVRFQAQARAG------------------------GGRRYQSTVEAYKTIAREEG 159
Query: 104 PKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSHISIMARVGAGMTTGCLA 163
+ L+ G S + R L YD +K L+ N + + G
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIK---DTLLKANLMTDDLPCHFTSAFGAGFCT 216
Query: 164 VLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVN 223
+IA P DVVK R+ S+ +Y + + R+EG + +KG + R N
Sbjct: 217 TVIASPVDVVKTRYM----NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWN 272
Query: 224 VSEIVCYDIIKE 235
V V Y+ +K
Sbjct: 273 VVMFVTYEQLKR 284
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 9/243 (3%)
Query: 87 EYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSH 146
+YKG+I ++ I K++G S + G A + R ++ D K ++ +D +
Sbjct: 49 QYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQF 108
Query: 147 ISIMA-RVGAGMTTGCLAVLIAQPTDVVKVRFQAQL-RGSSNNRYSNTLQAYAKIAREEG 204
A + +G G ++ P D + R A + +G++ ++ KI + +G
Sbjct: 109 WRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDG 168
Query: 205 AKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLV 264
+GL++G + I + YD K K + + V A A LV
Sbjct: 169 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTA--VAGLV 226
Query: 265 ASPVDVVKTRYM--NSKPGT---YSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCL 319
+ P D V+ R M + + G Y+G +C ++ EG AF+KG + V GM +
Sbjct: 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV 286
Query: 320 AVL 322
VL
Sbjct: 287 LVL 289
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 108/293 (36%), Gaps = 47/293 (16%)
Query: 147 ISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRG---SSNNRYSNTLQAYAKIAREE 203
+S + AG ++ P + VK+ Q Q S+ +Y + +I +E+
Sbjct: 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 64
Query: 204 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVS----RKILEDAMPCHFTSAVIAGF 259
G W+G +N R D K+ F+ K + S AG
Sbjct: 65 GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 124
Query: 260 CATLVASPVDVVKTRYM-----NSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARV---- 310
+ P+D +TR + ++G NC ++F +G Y+G V
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 184
Query: 311 ------------GAGM-----------------TTGCLAVLIAQPTDVVKVRFQAQL-RG 340
GM T +A L++ P D V+ R Q R
Sbjct: 185 IYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRK 244
Query: 341 SSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEF 393
++ Y+ T+ + KIA++EG K +KG SN R + +V YD IK+F
Sbjct: 245 GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEIKKF 296
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 87 EYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSH 146
E+ GL + I K +G + L+ G + +Q + + + G+YD+ K + L D H
Sbjct: 152 EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGM---LPDPKNVH 208
Query: 147 ISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQL-RGSSNNRYSNTLQAYAKIAREEGA 205
I + + T +A L++ P D V+ R Q R ++ Y+ T+ + KIA++EG
Sbjct: 209 IIVSWMIA--QTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGP 266
Query: 206 KGLWKGTASNASRNAIVNVSEIVCYDIIKEF 236
K +KG SN R + +V YD IK+F
Sbjct: 267 KAFFKGAWSNVLR-GMGGAFVLVLYDEIKKF 296
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 302 FYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQL-RGSSNNRYSNTLQAYAKIAREE 360
F++ + +G G ++ P D + R A + +G++ ++ KI + +
Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 167
Query: 361 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATL 420
G +GL++G + I + YD K K + + V A A L
Sbjct: 168 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTA--VAGL 225
Query: 421 VASPVDVVKTRYM--NSKPGT---YSGAANCAAQMFSQEGFNAFYKGFTPSFCRLVTWNI 475
V+ P D V+ R M + + G Y+G +C ++ EG AF+KG + R +
Sbjct: 226 VSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAF 285
Query: 476 VLWLSYEQIK 485
VL L Y++IK
Sbjct: 286 VLVL-YDEIK 294
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 16/199 (8%)
Query: 312 AGMTTGCLAVLIAQPTDVVKVRFQAQLRG---SSNNRYSNTLQAYAKIAREEGAKGLWKG 368
AG ++ P + VK+ Q Q S+ +Y + +I +E+G W+G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 369 TASNASRNAIVNVSEIVCYDIIKEFFVS----RKILEDAMPCHFTSAVIAGFCATLVASP 424
+N R D K+ F+ K + S AG + P
Sbjct: 73 NLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYP 132
Query: 425 VDVVKTRYM-----NSKPGTYSGAANCAAQMFSQEGFNAFYKGFTPSFCRLVTWNIVLWL 479
+D +TR + ++G NC ++F +G Y+GF S ++ + +
Sbjct: 133 LDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFG 192
Query: 480 SYEQIKLAI----NSHILV 494
Y+ K + N HI+V
Sbjct: 193 VYDTAKGMLPDPKNVHIIV 211
>pdb|1OVW|A Chain A, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|B Chain B, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|C Chain C, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
pdb|1OVW|D Chain D, Endoglucanase I Complexed With Non-Hydrolysable Substrate
Analogue
Length = 398
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 245 DAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMF 294
+ +PC A+ L P D K+ NSK G Y GA C AQ +
Sbjct: 134 EKLPCGMNGALY------LSEMPQDGGKSTSRNSKAGAYYGAGYCDAQCY 177
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 402 DAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMF 451
+ +PC A+ L P D K+ NSK G Y GA C AQ +
Sbjct: 134 EKLPCGMNGALY------LSEMPQDGGKSTSRNSKAGAYYGAGYCDAQCY 177
>pdb|2OVW|A Chain A, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|B Chain B, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|C Chain C, Endoglucanase I Complexed With Cellobiose
pdb|2OVW|D Chain D, Endoglucanase I Complexed With Cellobiose
pdb|3OVW|A Chain A, Endoglucanase I Native Structure
pdb|3OVW|B Chain B, Endoglucanase I Native Structure
pdb|4OVW|A Chain A, Endoglucanase I Complexed With Epoxybutyl Cellobiose
pdb|4OVW|B Chain B, Endoglucanase I Complexed With Epoxybutyl Cellobiose
Length = 411
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 245 DAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMF 294
+ +PC A+ L P D K+ NSK G Y GA C AQ +
Sbjct: 134 EKLPCGMNGALY------LSEMPQDGGKSTSRNSKAGAYYGAGYCDAQCY 177
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 402 DAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMF 451
+ +PC A+ L P D K+ NSK G Y GA C AQ +
Sbjct: 134 EKLPCGMNGALY------LSEMPQDGGKSTSRNSKAGAYYGAGYCDAQCY 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,677,879
Number of Sequences: 62578
Number of extensions: 456613
Number of successful extensions: 1001
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 18
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)