Query psy18226
Match_columns 499
No_of_seqs 240 out of 2426
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 16:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3.7E-55 1.3E-59 425.4 22.2 283 152-494 4-292 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1E-52 3.5E-57 407.4 28.3 282 146-488 4-297 (297)
3 2lck_A Mitochondrial uncouplin 100.0 8.9E-52 3.1E-56 401.6 20.8 286 26-396 3-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 8.1E-51 2.8E-55 394.0 24.3 292 20-393 3-296 (297)
5 3tgu_G UQCRQ, mitochondrial ub 22.2 52 0.0018 23.7 2.4 38 361-398 33-70 (81)
6 3vjj_A P9-1; 3.00A {Rice black 20.7 46 0.0016 29.9 2.2 35 417-456 274-308 (368)
7 3tgu_G UQCRQ, mitochondrial ub 17.4 1.3E+02 0.0043 21.7 3.5 39 455-493 33-71 (81)
8 1pp9_G Ubiquinol-cytochrome C 15.7 95 0.0033 22.3 2.5 40 361-400 33-72 (81)
9 1pp9_G Ubiquinol-cytochrome C 15.1 1.8E+02 0.0062 20.9 3.9 41 455-495 33-73 (81)
10 3cx5_H Cytochrome B-C1 complex 11.8 2.5E+02 0.0086 20.7 3.9 38 360-397 42-79 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.7e-55 Score=425.35 Aligned_cols=283 Identities=42% Similarity=0.725 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHHhHhcchHHHHHHHhhccccCC------CCCCCCcHHHHHHHHHHhhcccccccccchhhHHHHHHHHH
Q psy18226 152 RVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGS------SNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVS 225 (499)
Q Consensus 152 ~~~~g~~ag~~~~~~~~Pld~ik~r~q~~~~~~------~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~ 225 (499)
.+++|++||+++.++++|+|++|+|+|++.... ...+|++.++++++|+++||+++||||+.+++++.+|+.++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 688999999999999999999999999986521 13578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCchhhhHHHHHHHhHHHHhhcccHHHHHHHHhcCCCCCCCCHHHHHHHHHhhhchhhhHhh
Q psy18226 226 EIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKG 305 (499)
Q Consensus 226 ~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~~P~d~iktr~q~~~~~~~~~~~~~~~~i~~~eG~~g~~~G 305 (499)
+|.+||.+|+.+.+..+ ..+....+++|++||+++.++++|+|+||+|+|.+...
T Consensus 84 ~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------------------ 138 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------------------ 138 (303)
T ss_dssp TTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC------------------------
T ss_pred HHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc------------------------
Confidence 99999999998865422 34567789999999999999999999999999986521
Q ss_pred HHHHHhhhhhHhHhHHHhcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCcccccccchhhHhhHHHhhhhHHH
Q psy18226 306 IMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIV 385 (499)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~P~~~~~~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~~~ 385 (499)
....+|++.++++++|+++||++|||||+.+++++.+|..+++|.
T Consensus 139 -----------------------------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 183 (303)
T 2lck_A 139 -----------------------------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183 (303)
T ss_dssp -----------------------------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHH
Confidence 133468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhhhcchHHHHHHhhhcCCCCCCCCHHHHHHHHHhhhchhhhccchhh
Q psy18226 386 CYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGFTP 465 (499)
Q Consensus 386 ~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pldvvktr~q~~~~~~~~~~~~~~~~i~~~eG~~~lyrG~~~ 465 (499)
+||.+|+.+.+....+++....+++|++||++++++++|+||||||||.+....|.++++|+++++++||++|||||+.+
T Consensus 184 ~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~ 263 (303)
T 2lck_A 184 TYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMP 263 (303)
T ss_dssp HHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHH
T ss_pred HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHH
Confidence 99999998876554455667889999999999999999999999999998777899999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhccccC
Q psy18226 466 SFCRLVTWNIVLWLSYEQIKLAINSHILV 494 (499)
Q Consensus 466 ~~~~~~~~~~i~~~~ye~~~~~l~~~~~~ 494 (499)
+++|.+|.++++|.+||.+|+.+.....+
T Consensus 264 ~~~r~~p~~~i~f~~ye~~k~~l~~~~~~ 292 (303)
T 2lck_A 264 SFLRLGSWNVVMFVTYEQLKRALMAAYQS 292 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999888765443
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1e-52 Score=407.36 Aligned_cols=282 Identities=21% Similarity=0.324 Sum_probs=242.3
Q ss_pred cchhHHHHHHHHHHHHHHhHhcchHHHHHHHhhccccCC---CCCCCCcHHHHHHHHHHhhcccccccccchhhHHHHHH
Q psy18226 146 HISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGS---SNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIV 222 (499)
Q Consensus 146 ~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~q~~~~~~---~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~ 222 (499)
..+....+++|++||+++.++++|+|++|+|+|++.... ....|+++++++++|+++||++|||||+.+++++.+|+
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456778999999999999999999999999999986421 23478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccC----chhhhHHHHHHHhHHHHhhcccHHHHHHHHhcCCCCCCCCHHHHHHHHHhhhc
Q psy18226 223 NVSEIVCYDIIKEFFVSRKILED----AMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEG 298 (499)
Q Consensus 223 ~~~~~~~y~~lk~~~~~~~~~~~----~~~~~~~~g~~ag~~~~~i~~P~d~iktr~q~~~~~~~~~~~~~~~~i~~~eG 298 (499)
.+++|.+||.+|+.+......+. .....+++|++||++++++++|+|+||+|+|.+...
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~----------------- 146 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK----------------- 146 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-----------------
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC-----------------
Confidence 99999999999996543322111 234678999999999999999999999999986421
Q ss_pred hhhhHhhHHHHHhhhhhHhHhHHHhcccHHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCcccccccchhhHhhHHH
Q psy18226 299 FNAFYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAI 378 (499)
Q Consensus 299 ~~g~~~G~~~~~~~~~~~~~~~~~~~~P~~~~~~r~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~ 378 (499)
.+....|++.++++++++++||++|||||+.+++++.+|
T Consensus 147 -----------------------------------------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 185 (297)
T 1okc_A 147 -----------------------------------------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 185 (297)
T ss_dssp -----------------------------------------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHH
T ss_pred -----------------------------------------CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHH
Confidence 012456889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhhhcchHHHHHHhhhcCCC-----CCCCCHHHHHHHHHhh
Q psy18226 379 VNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKP-----GTYSGAANCAAQMFSQ 453 (499)
Q Consensus 379 ~~~i~~~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pldvvktr~q~~~~-----~~~~~~~~~~~~i~~~ 453 (499)
..+++|.+||.+|+.+.+.. +.+....+++|++||++++++++|+||||||||.+.. ..|.++++|+++|+++
T Consensus 186 ~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~ 263 (297)
T 1okc_A 186 YRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKD 263 (297)
T ss_dssp HHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999999765432 3445678999999999999999999999999998743 3689999999999999
Q ss_pred hchhhhccchhhhhHhHHHHHHHHHHHHHHHHHHH
Q psy18226 454 EGFNAFYKGFTPSFCRLVTWNIVLWLSYEQIKLAI 488 (499)
Q Consensus 454 eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l 488 (499)
||++|||||+.++++|. +.++++|.+||.+++.+
T Consensus 264 eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 264 EGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred cCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999999995 57899999999998764
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.9e-52 Score=401.55 Aligned_cols=286 Identities=52% Similarity=0.861 Sum_probs=250.4
Q ss_pred HHHHHHhHHHHHHHHhhCchHHHHHHHHHccCcCCCCCchhhhhhhhhhhhhhhhhhhcccccCChHHHHHHHHhhcChh
Q psy18226 26 MKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKKAVKQVEYKGLIGTLMTIAKKEGPK 105 (499)
Q Consensus 26 ~~~~ag~~~~~~~~~~~~Pld~ik~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~ 105 (499)
.++++|+++++++.+++||||+||+|+|++...... ........|+++++++++++++||++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~i~~~eG~~ 64 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGL------------------VRTAASAQYRGVLGTILTMVRTEGPR 64 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSH------------------HHHCSCSSCSCHHHHHHHHHHHHCHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccc------------------cccccCCCCCCHHHHHHHHHHhhCHH
Confidence 468999999999999999999999999998543210 00112236899999999999999999
Q ss_pred hhcccchhhhHhHhhhccccccccHHHHHHHhhhhcCCCCcchhHHHHHHHHHHHHHHhHhcchHHHHHHHhhccccCCC
Q psy18226 106 SLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSS 185 (499)
Q Consensus 106 ~lyrG~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~q~~~~~~~ 185 (499)
+||||+.+++++.++..+++|.+||.+|+.+... ....+....+++|++||+++.++++|+|++|+|+|++.....
T Consensus 65 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~----~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~ 140 (303)
T 2lck_A 65 SLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG----SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG 140 (303)
T ss_dssp HHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCC----CSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCC
Confidence 9999999999999999999999999999987642 123667889999999999999999999999999999864333
Q ss_pred CCCCCcHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhccCchhhhHHHHHHHhHHHHhhc
Q psy18226 186 NNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVA 265 (499)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~ag~~~~~i~ 265 (499)
...|.+.++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+....+.+....+++|++||+++++++
T Consensus 141 ~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~ 220 (303)
T 2lck_A 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIA 220 (303)
T ss_dssp SSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999999999999999999887654334566778999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCCHHHHHHHHHhhhchhhhHhhHHHHHhhhhhHhHhHHHhcccHHHHHHHHHHhhcCCCCCC
Q psy18226 266 SPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNR 345 (499)
Q Consensus 266 ~P~d~iktr~q~~~~~~~~~~~~~~~~i~~~eG~~g~~~G~~~~~~~~~~~~~~~~~~~~P~~~~~~r~q~~~~~~~~~~ 345 (499)
+|+|+||+|+|.+.. ..
T Consensus 221 ~P~dvvktrlq~~~~---------------------------------------------------------------~~ 237 (303)
T 2lck_A 221 SPVDVVKTRYMNSAL---------------------------------------------------------------GQ 237 (303)
T ss_dssp HHHHHHHHHHTTCCS---------------------------------------------------------------SS
T ss_pred CHHHHHHHHHHhccc---------------------------------------------------------------cc
Confidence 999999999998642 24
Q ss_pred CCcHHHHHHHHHHHhCcccccccchhhHhhHHHhhhhHHHHHHHHHHHHHh
Q psy18226 346 YSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVS 396 (499)
Q Consensus 346 ~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~ 396 (499)
|+++++++++++++||++|||||+.++++|.+|..+++|.+||.+|+.+..
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999987654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.1e-51 Score=394.00 Aligned_cols=292 Identities=24% Similarity=0.368 Sum_probs=245.4
Q ss_pred CCcchHHHHHHHhHHHHHHHHhhCchHHHHHHHHHccCcCCCCCchhhhhhhhhhhhhhhhhhhcccccCChHHHHHHHH
Q psy18226 20 EELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKKAVKQVEYKGLIGTLMTIA 99 (499)
Q Consensus 20 ~~~~~~~~~~ag~~~~~~~~~~~~Pld~ik~~lQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (499)
++++...++++|+++++++.+++||||+||+|+|++..... ......|+++++++++++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~---------------------~~~~~~~~~~~~~~~~i~ 61 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ---------------------ISAEKQYKGIIDCVVRIP 61 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS---------------------CCGGGSCCSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc---------------------cccccccccHHHHHHHHH
Confidence 45667889999999999999999999999999999854211 011236899999999999
Q ss_pred hhcChhhhcccchhhhHhHhhhccccccccHHHHHHHhhhhcCCCC-cchhHHHHHHHHHHHHHHhHhcchHHHHHHHhh
Q psy18226 100 KKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTS-HISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQ 178 (499)
Q Consensus 100 ~~~G~~~lyrG~~~~l~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ag~~~~~~~~Pld~ik~r~q 178 (499)
++||++|||||+.+++++.++..+++|.+||.+|+.+....+.... ..+....+++|++||+++.++++|+|+||+|+|
T Consensus 62 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq 141 (297)
T 1okc_A 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLA 141 (297)
T ss_dssp HHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHh
Confidence 9999999999999999999999999999999999854332111111 134577899999999999999999999999999
Q ss_pred ccccCC-CCCCCCcHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhccCchhhhHHHHHHH
Q psy18226 179 AQLRGS-SNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIA 257 (499)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~y~~lk~~~~~~~~~~~~~~~~~~~g~~a 257 (499)
++.... ....|.+.++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+.. +.+....+++|++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~--~~~~~~~~~~g~~a 219 (297)
T 1okc_A 142 ADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTV 219 (297)
T ss_dssp HCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG--CSCHHHHHHHHHHH
T ss_pred ccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC--CccHHHHHHHHHHH
Confidence 985422 245789999999999999999999999999999999999999999999999764332 34566789999999
Q ss_pred hHHHHhhcccHHHHHHHHhcCCCCCCCCHHHHHHHHHhhhchhhhHhhHHHHHhhhhhHhHhHHHhcccHHHHHHHHHHh
Q psy18226 258 GFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQ 337 (499)
Q Consensus 258 g~~~~~i~~P~d~iktr~q~~~~~~~~~~~~~~~~i~~~eG~~g~~~G~~~~~~~~~~~~~~~~~~~~P~~~~~~r~q~~ 337 (499)
|++++++++|+|+||+|+|.+....
T Consensus 220 g~~a~~~t~P~dvvktr~q~~~~~~------------------------------------------------------- 244 (297)
T 1okc_A 220 TAVAGLVSYPFDTVRRRMMMQSGRK------------------------------------------------------- 244 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCC-------------------------------------------------------
T ss_pred HHHHHHhcChHHHHHHHHhhcCCCC-------------------------------------------------------
Confidence 9999999999999999999864210
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHhCcccccccchhhHhhHHHhhhhHHHHHHHHHHH
Q psy18226 338 LRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEF 393 (499)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~ 393 (499)
.....|++.++++++++++||++|||||+.++++|. +..+++|.+||.+|++
T Consensus 245 ---~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 245 ---GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp ---GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred ---CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 123468899999999999999999999999999995 5789999999999865
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=22.18 E-value=52 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=28.8
Q ss_pred CcccccccchhhHhhHHHhhhhHHHHHHHHHHHHHhhc
Q psy18226 361 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRK 398 (499)
Q Consensus 361 G~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~ 398 (499)
|+...||-+..+++..+|..++.+.+|++.++......
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666888899999999999999998776543
No 6
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=20.70 E-value=46 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.3
Q ss_pred HHhhhcchHHHHHHhhhcCCCCCCCCHHHHHHHHHhhhch
Q psy18226 417 CATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGF 456 (499)
Q Consensus 417 ~a~~~t~Pldvvktr~q~~~~~~~~~~~~~~~~i~~~eG~ 456 (499)
+|++--||||.+|-.++.. .++...+++.+.++|+
T Consensus 274 LaTFdnypfdllRfqL~Sl-----istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL-----ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC-----CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh-----ccChHHHHHHHHhcCc
Confidence 5677889999998887654 3456778999999884
No 7
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=17.40 E-value=1.3e+02 Score=21.70 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=28.3
Q ss_pred chhhhccchhhhhHhHHHHHHHHHHHHHHHHHHHhcccc
Q psy18226 455 GFNAFYKGFTPSFCRLVTWNIVLWLSYEQIKLAINSHIL 493 (499)
Q Consensus 455 G~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~~ 493 (499)
|+.-.+|-+...++..+|...+.+.+|+...+.-.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~r 71 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKR 71 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 344445555667888999999999999988776644433
No 8
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.68 E-value=95 Score=22.34 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=30.0
Q ss_pred CcccccccchhhHhhHHHhhhhHHHHHHHHHHHHHhhccc
Q psy18226 361 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKIL 400 (499)
Q Consensus 361 G~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~~~~ 400 (499)
|+...+|-+..+++..+|..++.+.+|++.++........
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rK 72 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRK 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCC
Confidence 3444555566778889999999999999999887654433
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.14 E-value=1.8e+02 Score=20.87 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=30.8
Q ss_pred chhhhccchhhhhHhHHHHHHHHHHHHHHHHHHHhccccCC
Q psy18226 455 GFNAFYKGFTPSFCRLVTWNIVLWLSYEQIKLAINSHILVH 495 (499)
Q Consensus 455 G~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~l~~~~~~~ 495 (499)
|+.-.+|-+.-.++.++|...+.+.+|+...+.......++
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666777888999999999999998887765444443
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=11.82 E-value=2.5e+02 Score=20.71 Aligned_cols=38 Identities=8% Similarity=-0.177 Sum_probs=31.7
Q ss_pred hCcccccccchhhHhhHHHhhhhHHHHHHHHHHHHHhh
Q psy18226 360 EGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSR 397 (499)
Q Consensus 360 ~G~~glyrG~~~~l~~~~~~~~i~~~~ye~~k~~~~~~ 397 (499)
+|+...+|-+..+++..+|..++.+.+|++.++.....
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 56777788888889999999999999999998876543
Done!