RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18226
(499 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 86.5 bits (215), Expect = 1e-20
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 145 SHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEG 204
S +S +A + AG G +A + P DVVK R Q+ G S +Y L + KI +EEG
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSR-KYKGILDCFKKIYKEEG 59
Query: 205 AKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRK 241
+GL+KG N R A Y+ +K+ + +
Sbjct: 60 IRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 83.5 bits (207), Expect = 1e-19
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 305 GIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKG 364
+A + AG G +A + P DVVK R Q+ G S +Y L + KI +EEG +G
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSR-KYKGILDCFKKIYKEEGIRG 62
Query: 365 LWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRK 398
L+KG N R A Y+ +K+ + +
Sbjct: 63 LYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 79.2 bits (196), Expect = 3e-18
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 404 MPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGT---YSGAANCAAQMFSQEGFNAFY 460
+ IAG A V P+DVVKTR +S G Y G +C +++ +EG Y
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 461 KGFTPSFCRLVTWNIVLWLSYEQIKLAINSH 491
KG P+ R+ + + +YE +K +
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLKKLLLKK 95
Score = 71.1 bits (175), Expect = 3e-15
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 20 EELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNA 79
L + A G A A +T+PLD K RLQ
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSA----------------------- 37
Query: 80 KKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVK 133
A +YKG++ I K+EG + L+ GL L R A++ G Y+++K
Sbjct: 38 --AGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLK 89
Score = 63.4 bits (155), Expect = 1e-12
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 247 MPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGT---YSGAANCAAQMFSQEGFNAFY 303
+ IAG A V P+DVVKTR +S G Y G +C +++ +EG Y
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 304 KGIMARV 310
KG++ +
Sbjct: 65 KGLLPNL 71
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 79.0 bits (195), Expect = 3e-16
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 28 VAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKKAVKQVE 87
+ + G A + I +PLD A+ RL AS++ + E
Sbjct: 117 ILSGGLAGASSLLIVYPLDFARTRL-------------------ASDIGKGGDR-----E 152
Query: 88 YKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSHI 147
+ GL LM I+K+ G SL+ G +Q + + G+YDS K L GN +
Sbjct: 153 FTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLF----GNDKNT 208
Query: 148 SIMARVGAGMTTGCLAVLIAQPTDVVKVR--FQAQLRGSSNNRYSNTLQAYAKIAREEGA 205
+I+ + T LA LI+ P D V+ R + + S +Y+ TL + KI + EG
Sbjct: 209 NILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGL 268
Query: 206 KGLWKGTASNASR---NAIVNVSEIVCYDIIKEF 236
G +KG +N R A+V +V YD +++
Sbjct: 269 GGFFKGAWANVLRGAGGALV----LVFYDELQKL 298
Score = 57.5 bits (139), Expect = 5e-09
Identities = 68/296 (22%), Positives = 116/296 (39%), Gaps = 60/296 (20%)
Query: 149 IMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQ-----LRGSSNNRYSNTLQAYAKIAREE 203
+M + A ++ +A P + VK+ Q Q ++ RYS + + ++++E+
Sbjct: 12 LMGGISAAISKTAVA-----PIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQ 66
Query: 204 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILED---AMPCHFTSAVIAGFC 260
G LW+G +N R D K F D + S +AG
Sbjct: 67 GVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGAS 126
Query: 261 ATLVASPVDVVKTRYMN----SKPGTYSGAANCAAQMFSQEGFNAFYKGIMARV------ 310
+ L+ P+D +TR + ++G +C ++ Q GF + Y+G V
Sbjct: 127 SLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVY 186
Query: 311 -GA--GM-------------------------TTGCLAVLIAQPTDVVKVR--FQAQLRG 340
GA G+ T LA LI+ P D V+ R + +
Sbjct: 187 RGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKA 246
Query: 341 SSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASR---NAIVNVSEIVCYDIIKEF 393
S +Y+ TL + KI + EG G +KG +N R A+V +V YD +++
Sbjct: 247 KSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALV----LVFYDELQKL 298
Score = 54.8 bits (132), Expect = 3e-08
Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 13/236 (5%)
Query: 88 YKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGNTSHI 147
Y G++ ++K++G SL+ G +A + R + D K ++ + + T
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKY-NQKTDFW 110
Query: 148 SIM-ARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAK 206
+ +G G ++LI P D + R + + + ++ KI+++ G
Sbjct: 111 KFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFL 170
Query: 207 GLWKGTASNASRNAIVNVSEIVCYDIIKE-FFVSRKILEDAMPCHFTSAVIAGFCATLVA 265
L++G + + + YD K F + K + + A A L++
Sbjct: 171 SLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDK--NTNILYKWAVAQTVTILAGLIS 228
Query: 266 SPVDVVKTRYM------NSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARV--GAG 313
P D V+ R M Y+G +C ++ EG F+KG A V GAG
Sbjct: 229 YPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAG 284
Score = 52.1 bits (125), Expect = 2e-07
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 10/194 (5%)
Query: 302 FYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEG 361
F+K + +G G ++LI P D + R + + + ++ KI+++ G
Sbjct: 109 FWKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTG 168
Query: 362 AKGLWKGTASNASRNAIVNVSEIVCYDIIKE-FFVSRKILEDAMPCHFTSAVIAGFCATL 420
L++G + + + YD K F + K + + A A L
Sbjct: 169 FLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDK--NTNILYKWAVAQTVTILAGL 226
Query: 421 VASPVDVVKTRYM------NSKPGTYSGAANCAAQMFSQEGFNAFYKGFTPSFCRLVTWN 474
++ P D V+ R M Y+G +C ++ EG F+KG + R
Sbjct: 227 ISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGA 286
Query: 475 IVLWLSYEQIKLAI 488
+VL Y++++ +
Sbjct: 287 LVLVF-YDELQKLL 299
Score = 40.5 bits (95), Expect = 0.001
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 306 IMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQ-----LRGSSNNRYSNTLQAYAKIAREE 360
+M + A ++ +A P + VK+ Q Q ++ RYS + + ++++E+
Sbjct: 12 LMGGISAAISKTAVA-----PIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQ 66
Query: 361 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILED---AMPCHFTSAVIAGFC 417
G LW+G +N R D K F D + S +AG
Sbjct: 67 GVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGAS 126
Query: 418 ATLVASPVDVVKTRYMN----SKPGTYSGAANCAAQMFSQEGFNAFYKGFTPS 466
+ L+ P+D +TR + ++G +C ++ Q GF + Y+GF S
Sbjct: 127 SLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVS 179
Score = 34.4 bits (79), Expect = 0.11
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 23/111 (20%)
Query: 27 KVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKKAVKQV 86
K A A + A I++P DT + R+ + +KA ++
Sbjct: 213 KWAVAQTVTILAGLISYPFDTVRRRMMMMS----------------------GRKAKSEI 250
Query: 87 EYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYH 137
+Y G + I K EG F G A + R A V L YD ++ L
Sbjct: 251 QYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALV-LVFYDELQKLLK 300
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 31.0 bits (70), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 252 TSAV---IAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMA 308
TSA+ +AG A + +PVDV+K+R + Y + ++EG+ FYKG
Sbjct: 181 TSAICGGLAGGIAGFLTTPVDVIKSRQI-----IYGKSYIETVTEIAEEGYLTFYKGCCF 235
Query: 309 R 309
R
Sbjct: 236 R 236
Score = 30.3 bits (68), Expect = 2.0
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 409 TSAV---IAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKG 462
TSA+ +AG A + +PVDV+K+R + Y + ++EG+ FYKG
Sbjct: 181 TSAICGGLAGGIAGFLTTPVDVIKSRQI-----IYGKSYIETVTEIAEEGYLTFYKG 232
>gnl|CDD|224641 COG1727, RPL18A, Ribosomal protein L18E [Translation, ribosomal
structure and biogenesis].
Length = 122
Score = 29.6 bits (67), Expect = 1.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 183 GSSNNRYSNTLQAYAKIAREEGAKGLWKGTA---SNASRN-AIVNVSEIVCY 230
GS+N ++ K AR A +WK A RN A VNVS+I Y
Sbjct: 7 GSTNVYLRKLIRFLRKAARRSSAP-IWKDVAERLEKPRRNRAEVNVSKINRY 57
Score = 29.6 bits (67), Expect = 1.4
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 340 GSSNNRYSNTLQAYAKIAREEGAKGLWKGTA---SNASRN-AIVNVSEIVCY 387
GS+N ++ K AR A +WK A RN A VNVS+I Y
Sbjct: 7 GSTNVYLRKLIRFLRKAARRSSAP-IWKDVAERLEKPRRNRAEVNVSKINRY 57
>gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase
family. E. coli has two sequence related isozymes of
glycerophosphoryl diester phosphodiesterase (GDPD) -
periplasmic and cytosolic. This family also includes
agrocinopine synthase, the similarity to GDPD has been
noted. This family appears to have weak but not
significant matches to mammalian phospholipase C
pfam00388, which suggests that this family may adopt a
TIM barrel fold.
Length = 238
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 182 RGSSNNRYSNTLQAYAKIAREEGAKGLW 209
RG+S + NTL A+ K A E GA +
Sbjct: 2 RGASGDYPENTLLAFRK-AAEAGADYIE 28
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 339 RGSSNNRYSNTLQAYAKIAREEGAKGLW 366
RG+S + NTL A+ K A E GA +
Sbjct: 2 RGASGDYPENTLLAFRK-AAEAGADYIE 28
>gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy
production and conversion].
Length = 257
Score = 29.4 bits (66), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 182 RGSSNNRYSNTLQAYAKIAREEGAKGLW 209
RG+S NTL A+ A E+GA +
Sbjct: 12 RGASGYAPENTLAAFEL-AAEQGADYIE 38
Score = 29.4 bits (66), Expect = 3.4
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 339 RGSSNNRYSNTLQAYAKIAREEGAKGLW 366
RG+S NTL A+ A E+GA +
Sbjct: 12 RGASGYAPENTLAAFEL-AAEQGADYIE 38
>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase.
Length = 477
Score = 29.1 bits (65), Expect = 6.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 163 AVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKG 211
AVLI T + A++R S N +S A A IAR+ A WKG
Sbjct: 60 AVLIETLTAL-----GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKG 103
Score = 29.1 bits (65), Expect = 6.7
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 320 AVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKG 368
AVLI T + A++R S N +S A A IAR+ A WKG
Sbjct: 60 AVLIETLTAL-----GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKG 103
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 28.1 bits (63), Expect = 7.3
Identities = 9/62 (14%), Positives = 17/62 (27%)
Query: 188 RYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAM 247
+ + + A R +VN+ + D K + + EDA
Sbjct: 29 QEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQDSSKIVLLEPRKYEDAQ 88
Query: 248 PC 249
Sbjct: 89 EI 90
Score = 28.1 bits (63), Expect = 7.3
Identities = 9/62 (14%), Positives = 17/62 (27%)
Query: 345 RYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAM 404
+ + + A R +VN+ + D K + + EDA
Sbjct: 29 QEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQDSSKIVLLEPRKYEDAQ 88
Query: 405 PC 406
Sbjct: 89 EI 90
>gnl|CDD|237694 PRK14374, PRK14374, hypothetical protein; Provisional.
Length = 118
Score = 27.3 bits (60), Expect = 7.6
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 454 EGFNAFYKGFTPSFCRL--VTWNIVLWLSYEQIKLAINSHILV 494
G+ F+ FT S CR N LWL + L+ I +
Sbjct: 18 RGYQRFFSAFTFSSCRFYPTCSNYALWLLCFENPLSAMGKIAI 60
>gnl|CDD|236557 PRK09542, manB, phosphomannomutase/phosphoglucomutase; Reviewed.
Length = 445
Score = 28.8 bits (65), Expect = 8.6
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 284 SGAANCAAQMFSQEGFNAFYKGI-MARVGA---GMTTGCLAVLIA 324
SG +C MF+ A Y GI + R GA G TG LA +
Sbjct: 81 SGLLDCPGAMFTASHNPAAYNGIKLCRAGAKPVGQDTG-LAAIRD 124
>gnl|CDD|183017 PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase;
Provisional.
Length = 575
Score = 28.8 bits (65), Expect = 8.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 140 IDGNTSHISIMAR 152
I G TSH SIMAR
Sbjct: 183 IGGRTSHTSIMAR 195
>gnl|CDD|240126 cd04822, PA_M28_1_3, PA_M28_1_3: Protease-associated (PA) domain,
peptidase family M28, subfamily-1, subgroup 3. A
subgroup of PA-domain containing proteins belonging to
the peptidase family M28. Family M28 contains
aminopeptidases and carboxypeptidases, and has
co-catalytic zinc ions. The PA domain is an insert
domain in a diverse fraction of proteases. The
significance of the PA domain to many of the proteins in
which it is inserted is undetermined. It may be a
protein-protein interaction domain. At peptidase active
sites, the PA domain may participate in substrate
binding and/or promoting conformational changes, which
influence the stability and accessibility of the site to
substrate. Proteins into which the PA domain is inserted
include the following members of the peptidase family
M28: i) prostate-specific membrane antigen (PSMA), ii)
yeast aminopeptidase Y, and ii) human TfR (transferrin
receptor)1 and human TfR2. The proteins listed above
belong to other subgroups; relatively little is known
about proteins in this subgroup.
Length = 151
Score = 27.8 bits (62), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 182 RGSSNNRYSNTLQAYAKIAREEGAKGL 208
G R++ L+ A AR GA +
Sbjct: 68 NGPGLTRHAG-LRYKATNARRHGAAAV 93
Score = 27.8 bits (62), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 339 RGSSNNRYSNTLQAYAKIAREEGAKGL 365
G R++ L+ A AR GA +
Sbjct: 68 NGPGLTRHAG-LRYKATNARRHGAAAV 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,408,791
Number of extensions: 2314665
Number of successful extensions: 2034
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2018
Number of HSP's successfully gapped: 38
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.3 bits)