RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18226
(499 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 325 bits (834), Expect = e-109
Identities = 152/287 (52%), Positives = 194/287 (67%), Gaps = 22/287 (7%)
Query: 24 LSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKKAV 83
+++K AG+AAC AD ITFPLDTAKVRLQ+QGE+ +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQG------------------LVRTA 42
Query: 84 KQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQLIDGN 143
+Y+G++GT++T+ + EGP+SL+NGL AGLQRQ+ FASVR+G+YDSVK Q
Sbjct: 43 ASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK----QFYTKG 98
Query: 144 TSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREE 203
+ H I +R+ AG TTG LAV +AQPTDVVKVRFQAQ R RY +T++AY IAREE
Sbjct: 99 SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158
Query: 204 GAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATL 263
G +GLWKGT+ N +RNAIVN +E+V YD+IK+ + ++ D +PCHFTSA AGFC T+
Sbjct: 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTV 218
Query: 264 VASPVDVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARV 310
+ASPVDVVKTRYMNS G Y A +CA M +EG AFYKG M
Sbjct: 219 IASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSF 265
Score = 287 bits (736), Expect = 3e-94
Identities = 138/348 (39%), Positives = 178/348 (51%), Gaps = 66/348 (18%)
Query: 155 AGMTTGCLAVLIAQPTDVVKVRFQAQ------LRGSSNNRYSNTLQAYAKIAREEGAKGL 208
T C+A LI P D KVR Q Q +R +++ +Y L + R EG + L
Sbjct: 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSL 66
Query: 209 WKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPV 268
+ G + R I Y
Sbjct: 67 YNGLVAGLQRQMSFASVRIGLY-------------------------------------- 88
Query: 269 DVVKTRYMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCLAVLIAQPTD 328
D VK Y GI +R+ AG TTG LAV +AQPTD
Sbjct: 89 DSVKQFYTKGSEHA----------------------GIGSRLLAGSTTGALAVAVAQPTD 126
Query: 329 VVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVSEIVCYD 388
VVKVRFQAQ R RY +T++AY IAREEG +GLWKGT+ N +RNAIVN +E+V YD
Sbjct: 127 VVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYD 186
Query: 389 IIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNSKPGTYSGAANCAA 448
+IK+ + ++ D +PCHFTSA AGFC T++ASPVDVVKTRYMNS G Y A +CA
Sbjct: 187 LIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCAL 246
Query: 449 QMFSQEGFNAFYKGFTPSFCRLVTWNIVLWLSYEQIKLAINSHILVHE 496
M +EG AFYKGF PSF RL +WN+V++++YEQ+K A+ + E
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294
Score = 129 bits (326), Expect = 4e-34
Identities = 50/232 (21%), Positives = 82/232 (35%), Gaps = 31/232 (13%)
Query: 19 PEELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANN 78
E + ++ A + A + P D KVR Q Q
Sbjct: 99 SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA---------------------- 136
Query: 79 AKKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQ 138
+A Y+ + TIA++EG + L+ G S + R L YD +K
Sbjct: 137 --RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK---DT 191
Query: 139 LIDGNTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAK 198
L+ N + + G +IA P DVVK R+ + +Y +
Sbjct: 192 LLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS----ALGQYHSAGHCALT 247
Query: 199 IAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCH 250
+ R+EG + +KG + R NV V Y+ +K ++ +A H
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFHH 299
Score = 65.8 bits (161), Expect = 4e-12
Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 404 MPCHFTSAVIAGFCATLVASPVDVVKTR----------YMNSKPGTYSGAANCAAQMFSQ 453
M F A A A L+ P+D K R + Y G M
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 454 EGFNAFYKGFTPSFCRLVTWNIVLWLSYEQIK 485
EG + Y G R +++ V Y+ +K
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 146 bits (371), Expect = 2e-40
Identities = 62/298 (20%), Positives = 109/298 (36%), Gaps = 30/298 (10%)
Query: 20 EELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNA 79
+ L A G AA + P++ K+ LQ+Q + K+
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ------------- 49
Query: 80 KKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQL 139
YKG+I ++ I K++G S + G A + R ++ D K ++
Sbjct: 50 --------YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG 101
Query: 140 IDGNTS-HISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNR-YSNTLQAYA 197
+D + + +G G ++ P D + R A + + R ++
Sbjct: 102 VDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT 161
Query: 198 KIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIA 257
KI + +G +GL++G + I + YD K K + + A
Sbjct: 162 KIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK--NVHIIVSWMIAQTV 219
Query: 258 GFCATLVASPVDVVKTRYM-----NSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARV 310
A LV+ P D V+ R M Y+G +C ++ EG AF+KG + V
Sbjct: 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277
Score = 143 bits (364), Expect = 2e-39
Identities = 67/304 (22%), Positives = 112/304 (36%), Gaps = 61/304 (20%)
Query: 143 NTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQ---LRGSSNNRYSNTLQAYAKI 199
+ +S + AG ++ P + VK+ Q Q + S+ +Y + +I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 200 AREEGAKGLWKGTASNASR----NAIVNVSEIVCYDIIKEFFVS----RKILEDAMPCHF 251
+E+G W+G +N R A+ D K+ F+ K +
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQAL----NFAFKDKYKQIFLGGVDRHKQFWRYFAGNL 116
Query: 252 TSAVIAGFCATLVASPVDVVKTR-----YMNSKPGTYSGAANCAAQMFSQEGFNAFYKG- 305
S AG + P+D +TR + ++G NC ++F +G Y+G
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGF 176
Query: 306 --------------------------------IMARVGAGMTTGCLAVLIAQPTDVVKVR 333
I+ T +A L++ P D V+ R
Sbjct: 177 NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236
Query: 334 FQAQ-LRGSSNNRYSNTLQAYAKIAREEGAKGLWKGTASNASR---NAIVNVSEIVCYDI 389
Q R ++ Y+ T+ + KIA++EG K +KG SN R A V +V YD
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV----LVLYDE 292
Query: 390 IKEF 393
IK+F
Sbjct: 293 IKKF 296
Score = 133 bits (338), Expect = 9e-36
Identities = 54/288 (18%), Positives = 99/288 (34%), Gaps = 55/288 (19%)
Query: 250 HFTSAVIAGFCATLVASPVDVVKTRYMNSKPGT-------YSGAANCAAQMFSQEGFNAF 302
F + +A + +P++ VK Y G +C ++ ++GF +F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 303 YKGIMA---------------------------------------RVGAGMTTGCLAVLI 323
++G +A + +G G ++
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 129
Query: 324 AQPTDVVKVRFQAQLRGSSNNR-YSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVS 382
P D + R A + + R ++ KI + +G +GL++G + I +
Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189
Query: 383 EIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYM-----NSKP 437
YD K K + + A A LV+ P D V+ R M
Sbjct: 190 YFGVYDTAKGMLPDPK--NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGAD 247
Query: 438 GTYSGAANCAAQMFSQEGFNAFYKGFTPSFCRLVTWNIVLWLSYEQIK 485
Y+G +C ++ EG AF+KG + R + V + Y++IK
Sbjct: 248 IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEIK 294
Score = 125 bits (315), Expect = 1e-32
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 36/222 (16%)
Query: 19 PEELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANN 78
+ +A+ G+A + +PLD A+ RL
Sbjct: 107 QFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAAD----------------------- 143
Query: 79 AKKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQ 138
K Q E+ GL + I K +G + L+ G + +Q + + + G+YD+ K +
Sbjct: 144 VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP- 202
Query: 139 LIDGNTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQ-LRGSSNNRYSNTLQAYA 197
+ ++ I+ T +A L++ P D V+ R Q R ++ Y+ T+ +
Sbjct: 203 ----DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWR 258
Query: 198 KIAREEGAKGLWKGTASNASR---NAIVNVSEIVCYDIIKEF 236
KIA++EG K +KG SN R A V +V YD IK+F
Sbjct: 259 KIAKDEGPKAFFKGAWSNVLRGMGGAFV----LVLYDEIKKF 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 33/142 (23%)
Query: 1 MFISPDAVIN------------GHIIYKMVPEELPLSMKVAAAG------SA-ACFADFI 41
F S +++ ++ + + + AG +A A AD +
Sbjct: 1718 TFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 42 TFPLDTAKV---RLQLQGEANTKGPVKKIVLSQASNVANNAKKAVKQVEYKGLIGTLMTI 98
+ +V R A + + + S +A N + + L + +
Sbjct: 1778 SIE-SLVEVVFYRGMTMQVAVPRDELGR---SNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 99 AKKEGPKSL----FNGLSAGLQ 116
K+ G + +N Q
Sbjct: 1834 GKRTG-WLVEIVNYN--VENQQ 1852
Score = 41.6 bits (97), Expect = 7e-04
Identities = 68/503 (13%), Positives = 132/503 (26%), Gaps = 201/503 (39%)
Query: 27 KVAAAGSAACFADF-----ITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNAKK 81
+ G+A A F + +L+ T + ++ ++ + +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFE------ELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 82 AVKQVEY---KGL-IGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVK--CL 135
E +GL I + P + L + S +
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNT-PDKDY----------LLSIPI------SCPLIGV 243
Query: 136 YHQLIDGNTSHISIMARVGAGMT-----------TGCL-----AVLIAQPTD-------- 171
QL +H + A++ G T TG AV IA+
Sbjct: 244 I-QL-----AHYVVTAKL-LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV 296
Query: 172 --VVKVRFQAQLRGSSNNRYSNTLQAY------AKIAREEGAKGLWKGTAS------NAS 217
+ V F +R +AY I + +G S N +
Sbjct: 297 RKAITVLFFIGVRC---------YEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLT 345
Query: 218 RNAIVNVSEIVCYDIIKEFFVSRKI---LEDAMPCHFTSAVIAGFCATLVASPVDVVKTR 274
+ + + +++ L + + V++G +L
Sbjct: 346 QEQVQDYVNKTN----SHLPAGKQVEISLVNG-AKNL---VVSGPPQSL----------- 386
Query: 275 YMNSKPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGAGMTTGCLAVLIAQPTDVVKVRF 334
G N + A G D ++ F
Sbjct: 387 ----------------------YGLNLTLRKAKAPSG---------------LDQSRIPF 409
Query: 335 -QAQLRGSSNNRY--------SNTLQ-AYAKIAREEGAKGL-WKG-----------TASN 372
+ +L+ S NR+ S+ L A I ++ + + S+
Sbjct: 410 SERKLKFS--NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 373 ASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRY 432
R ++SE + II+ +P + + F AT + +D
Sbjct: 468 L-RVLSGSISERIVDCIIR------------LPVKWETTT--QFKATHI---LDF----- 504
Query: 433 MNSKPGTYSGAANCAAQMFSQEG 455
PG SG + ++G
Sbjct: 505 ---GPGGASGLGVLTHRN--KDG 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.35
Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 70/235 (29%)
Query: 41 ITFPLDTAKVRLQ-LQGEANTKGPVKKIVLSQASNVANNAKKAVKQVEYKGLIG--TLMT 97
I + + + L+ L + +VL NV N KA + L+T
Sbjct: 223 IKLRIHSIQAELRRLL--KSKPYENCLLVLL---NVQN--AKAWNAFN----LSCKILLT 271
Query: 98 IAKKEGPKSLFNGLSAGLQRQLC----------------FASVRLGMYDSVKCLYHQLID 141
K + + LSA + L + L +++
Sbjct: 272 TRFK----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDC--RPQDLPREVLT 324
Query: 142 GNTSHISIMA---RVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQA-YA 197
N +SI+A R G V + T +++ S N + +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--------SLNVLEPAEYRKMFD 376
Query: 198 KIAR-EEGAK-------GLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILE 244
+++ A +W +V + ++ + ++E
Sbjct: 377 RLSVFPPSAHIPTILLSLIWF------------DVIKSDVMVVVNK-LHKYSLVE 418
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 1.0
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 80 KKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQ 116
K+A+K+++ +L A P +L + A ++
Sbjct: 19 KQALKKLQ-----ASLKLYADDSAP-AL--AIKATME 47
Score = 28.4 bits (62), Expect = 3.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 20 EELPLSMKVAAAGSAACFA 38
++L S+K+ A SA A
Sbjct: 23 KKLQASLKLYADDSAPALA 41
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 29.5 bits (67), Expect = 2.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 58 ANTKGPVKKIVLSQASNVANNAKKAVKQVEYKGLIGTLMT 97
A G VKK LS+ + K A+ E L+G +T
Sbjct: 119 ATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 29.4 bits (67), Expect = 3.1
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 142 GNTSHISIMAR-------VGAGMTT------------GCLAVLIAQPTDVVKVRFQAQLR 182
G TS +IM+R VG T G +I PT+ + +Q +
Sbjct: 187 GRTSASAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRE 246
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 29.4 bits (67), Expect = 3.3
Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 142 GNTSHISIMAR-------VGAGMTT------------GCLAVLIAQPTDVVKVRFQAQLR 182
G TSH SIMAR VG G T + PT+ V + +A
Sbjct: 185 GRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQE 244
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP:
a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A
2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Length = 258
Score = 28.8 bits (65), Expect = 3.5
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 19/60 (31%)
Query: 142 GNTSHISIMAR-------VGAG-----MTTGCLAVL-------IAQPTDVVKVRFQAQLR 182
G TSH SIMAR VG G + +L PT+ V + +A
Sbjct: 185 GRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPTNEVIDKMRAVQE 244
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics,
PSI, protein structu initiative; 1.70A {Escherichia
coli} SCOP: c.1.18.3 PDB: 1t8q_A
Length = 356
Score = 28.0 bits (62), Expect = 7.7
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 155 AGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGL 208
A M + + A D + A RG+S +TL A A A +GA L
Sbjct: 11 AIMMSTIVMGSSAMAADSNEKIVIAH-RGASGYLPEHTLPAKAM-AYAQGADYL 62
Score = 28.0 bits (62), Expect = 7.7
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 312 AGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNRYSNTLQAYAKIAREEGAKGL 365
A M + + A D + A RG+S +TL A A A +GA L
Sbjct: 11 AIMMSTIVMGSSAMAADSNEKIVIAH-RGASGYLPEHTLPAKAM-AYAQGADYL 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,361,306
Number of extensions: 443970
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 27
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)