RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18226
(499 letters)
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
heart isoform t1 [TaxId: 9913]}
Length = 292
Score = 100 bits (249), Expect = 3e-24
Identities = 61/306 (19%), Positives = 108/306 (35%), Gaps = 30/306 (9%)
Query: 20 EELPLSMKVAAAGSAACFADFITFPLDTAKVRLQLQGEANTKGPVKKIVLSQASNVANNA 79
+ L A G AA + P++ K+ LQ+Q + K+
Sbjct: 2 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQ------------- 48
Query: 80 KKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKCLYHQL 139
YKG+I ++ I K++G S + G A + R ++ D K ++
Sbjct: 49 --------YKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG 100
Query: 140 IDGNTSHISIMA-RVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSSNNR-YSNTLQAYA 197
+D + A + +G G ++ P D + R A + + R ++
Sbjct: 101 VDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCIT 160
Query: 198 KIAREEGAKGLWKGTASNASRNAIVNVSEIVCYDIIKEFFVSRKILEDAMPCHFTSAVIA 257
KI + +G +GL++G + I + + + A
Sbjct: 161 KIFKSDGLRGLYQGFNVSVQGIIIYRA--AYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV 218
Query: 258 GFCATLVASPVDVVKTRYMNS-----KPGTYSGAANCAAQMFSQEGFNAFYKGIMARVGA 312
A LV+ P D V+ R M Y+G +C ++ EG AF+KG + V
Sbjct: 219 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 278
Query: 313 GMTTGC 318
GM
Sbjct: 279 GMGGAF 284
Score = 88.2 bits (217), Expect = 4e-20
Identities = 47/287 (16%), Positives = 90/287 (31%), Gaps = 55/287 (19%)
Query: 250 HFTSAVIAGFCATLVASPVDVVKTRYMN-------SKPGTYSGAANCAAQMFSQEGF--- 299
F + +A + +P++ VK S Y G +C ++ ++GF
Sbjct: 9 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68
Query: 300 ------------------------------------NAFYKGIMARVGAGMTTGCLAVLI 323
F++ + +G G ++
Sbjct: 69 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 128
Query: 324 AQPTDVVKVRFQAQLRGSSNNR-YSNTLQAYAKIAREEGAKGLWKGTASNASRNAIVNVS 382
P D + R A + + R ++ KI + +G +GL++G + I
Sbjct: 129 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA- 187
Query: 383 EIVCYDIIKEFFVSRKILEDAMPCHFTSAVIAGFCATLVASPVDVVKTRYMNS-----KP 437
+ + + A A LV+ P D V+ R M
Sbjct: 188 -AYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGAD 246
Query: 438 GTYSGAANCAAQMFSQEGFNAFYKGFTPSFCRLVTWNIVLWLSYEQI 484
Y+G +C ++ EG AF+KG + R + + Y++I
Sbjct: 247 IMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR-GMGGAFVLVLYDEI 292
Score = 42.0 bits (97), Expect = 9e-05
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 407 HFTSAVIAGFCATLVASPVDVVKTRYMN-------SKPGTYSGAANCAAQMFSQEGFNAF 459
F + +A + +P++ VK S Y G +C ++ ++GF +F
Sbjct: 9 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68
Query: 460 YKGFTPSFCRLVTWNIVLWLSYEQIKLAINSH 491
++G + R + + ++ K
Sbjct: 69 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGG 100
Score = 39.7 bits (91), Expect = 5e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 77 NNAKKAVKQVEYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSV 132
+ + + Y G + IAK EGPK+ F G + + R + A V L +YD +
Sbjct: 238 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV-LVLYDEI 292
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646
{Thermotoga maritima [TaxId: 2336]}
Length = 119
Score = 26.9 bits (60), Expect = 2.7
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 87 EYKGLIGTLMTIAKKEGPKSLFNGLSAGLQRQLCFASVRLGMYDSVKC-------LYHQL 139
YK I + + +K+ K L S R ++ V+ L ++
Sbjct: 43 RYKNAIKEFLKLIEKKIYK---------LAGSFDMNSGRARLHLVVEEVNEKLMDLTEKI 93
Query: 140 IDGNTSHISIMARVG 154
+ I++ AR+
Sbjct: 94 MKNEWQTINLAARIE 108
>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460
{Methanococcus jannaschii [TaxId: 2190]}
Length = 152
Score = 27.2 bits (60), Expect = 2.8
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 249 CHFTSAVIAGFCATLVASPVDVVKTR 274
F + ++AG + V +
Sbjct: 112 HDFIAGILAGCLEEIFYYYFVVNEVE 137
Score = 27.2 bits (60), Expect = 2.8
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 406 CHFTSAVIAGFCATLVASPVDVVKTR 431
F + ++AG + V +
Sbjct: 112 HDFIAGILAGCLEEIFYYYFVVNEVE 137
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Clostridium cellulolyticum, atcc
35319 [TaxId: 1521]}
Length = 454
Score = 27.7 bits (61), Expect = 3.5
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 126 LGMYDSVKCLYHQLIDGNTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQLRGSS 185
+ + Y+Q+ DG H M V ++P V A L ++
Sbjct: 103 IKCNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAA 162
Query: 186 ------NNRYSNTLQAYAKIAREEGAKGLWKGTASNAS 217
+ Y+ ++AK + K + AS
Sbjct: 163 VVFKSSDPTYAEKCISHAKNLFDMADKAKSDAGYTAAS 200
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase
UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Length = 240
Score = 27.3 bits (59), Expect = 4.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 182 RGSSNNRYSNTLQAYAKIAREEGAKGLW 209
RG++ NT A A ++GA +
Sbjct: 8 RGANRFAPENTFAAADL-ALQQGADYIE 34
Score = 27.3 bits (59), Expect = 4.3
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 339 RGSSNNRYSNTLQAYAKIAREEGAKGLW 366
RG++ NT A A ++GA +
Sbjct: 8 RGANRFAPENTFAAADL-ALQQGADYIE 34
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase
GlpQ {Escherichia coli [TaxId: 562]}
Length = 328
Score = 27.4 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 182 RGSSNNRYSNTLQAYAKIAREEGAKGLW 209
RG+S +TL A A A +GA L
Sbjct: 9 RGASGYLPEHTLPAKAM-AYAQGADYLE 35
Score = 27.4 bits (59), Expect = 4.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 339 RGSSNNRYSNTLQAYAKIAREEGAKGLW 366
RG+S +TL A A A +GA L
Sbjct: 9 RGASGYLPEHTLPAKAM-AYAQGADYLE 35
>d1j7na2 d.92.1.14 (A:551-773) Anthrax toxin lethal factor, N- and
C-terminal domains {Bacillus anthracis [TaxId: 1392]}
Length = 223
Score = 26.4 bits (58), Expect = 6.7
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 474 NIVLWLSYEQIKLAINSHILVHE 496
+I+L + ++L +S +HE
Sbjct: 115 SILLHGPSKGVELRNDSEGFIHE 137
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 25.2 bits (55), Expect = 7.3
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 125 RLGMYDSVKCLYHQLIDGNTSHISIMARVGAGMTTGCLAVLIAQPTDVVKVRFQAQL--- 181
RL +Y S K +Y Q+ID + A A + A + + +
Sbjct: 21 RLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKSGNKTDTAAAVGKALAAAAAEKGIKQV 80
Query: 182 ---RGSSNNRYSNTLQAYAKIAREEG 204
RGS +Y ++A A ARE G
Sbjct: 81 VFDRGS--YKYHGRVKALADAAREGG 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,736,482
Number of extensions: 76603
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 15
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)