Query psy18227
Match_columns 211
No_of_seqs 136 out of 374
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 16:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02862 DDHD: DDHD domain; I 100.0 2.1E-48 4.6E-53 331.3 10.8 186 2-190 4-227 (227)
2 KOG2308|consensus 100.0 1.8E-39 3.9E-44 311.7 7.7 191 2-196 513-735 (741)
3 cd06885 PX_SNX17_31 The phosph 42.3 21 0.00046 26.8 2.2 29 159-187 75-103 (104)
4 cd07284 PX_SNX7 The phosphoino 25.2 54 0.0012 25.2 2.0 24 161-184 90-113 (116)
5 cd06865 PX_SNX_like The phosph 23.1 57 0.0012 25.0 1.8 24 161-184 94-117 (120)
6 cd06860 PX_SNX7_30_like The ph 22.3 66 0.0014 24.5 2.0 25 160-184 89-113 (116)
7 cd06864 PX_SNX4 The phosphoino 21.8 61 0.0013 25.3 1.7 26 160-185 102-127 (129)
8 cd06859 PX_SNX1_2_like The pho 21.7 58 0.0012 24.3 1.5 26 159-184 86-111 (114)
9 cd07281 PX_SNX1 The phosphoino 20.9 54 0.0012 25.2 1.2 28 159-186 96-123 (124)
10 cd06897 PX_SNARE The phosphoin 18.5 90 0.002 23.0 2.0 26 159-184 78-105 (108)
No 1
>PF02862 DDHD: DDHD domain; InterPro: IPR004177 The DDHD domain is 180 residues long and contains four conserved residues that may form a metal binding site. The domain is named after these four residues. This pattern of conservation of metal binding residues is often seen in phosphoesterase domains. This domain is found in retinal degeneration B proteins, as well as a family of probable phospholipases.; GO: 0046872 metal ion binding
Probab=100.00 E-value=2.1e-48 Score=331.30 Aligned_cols=186 Identities=33% Similarity=0.525 Sum_probs=117.5
Q ss_pred CCceEEEecChHHHHHHhcCCCCCC---------CCCCCCccccccccccccCCCcccccccccccccccCcCceeeccc
Q psy18227 2 WLDNLFCLGSPLAVFLALRVPRGHH---------GNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSY 72 (211)
Q Consensus 2 ~V~~lF~~GSPlg~fl~~r~~~~~~---------~~~~~~~~~c~~~yNIfhp~DPvAyRlEPli~~~~~~~~p~~ip~~ 72 (211)
+|++|||||||||+||++|+..... ....++.+.|.++||||||+|||||||||||+++|+.++|+.||++
T Consensus 4 ~v~~lF~~GSPlg~fl~lr~~~~~~~~~~~~~~~~~~~~~~p~~~~~yNifhp~DPvAyRlEPli~~~~~~~~P~~ip~~ 83 (227)
T PF02862_consen 4 KVDNLFLVGSPLGLFLTLRGAQIGARSASEYVTDEGSFYPCPACRRIYNIFHPYDPVAYRLEPLIDPRYADIKPVSIPRF 83 (227)
T ss_pred CcCeEEEeCCCHHHHHHHhCccccccccccccccccccccCCccccceeeeecCChHHHhHHHHHhhhhccCCCeecccc
Confidence 6999999999999999999987542 2345667789999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCC--cccccCCCCCCC--CCCCCC-CCCCCCCCcccccc---cccccC-CcCC--------CCCCCC---
Q psy18227 73 NASSKPLYCDMP--LEFIIPSPSPSE--TSPPPL-LENPPPPQEKSWKK---WSLSFV-KPAV--------GPGSKS--- 132 (211)
Q Consensus 73 ~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~---~~~~~~-~~~~--------~~s~~~--- 132 (211)
+++...++.... ..+......... ..+... ..+..........- ...... .... ......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~as~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (227)
T PF02862_consen 84 KGGKLGHYESKKSISNIGSAISQNLSSTTSSLKNGFASSLRNSSSSLSSNDSESSDSSDSSQSSSSSDSSASSNSESSTS 163 (227)
T ss_pred cccCcccccccchhhHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 997654432111 011100000000 000000 00000000000000 000000 0000 000000
Q ss_pred ---CCCCC---C--CCCCCCCCCceeEEeecCCCchHH-HHHHHhhhhhhcccchhhHHHHHHHhcC
Q psy18227 133 ---NAQTQ---P--ESPYEGLEHRLDYALKDTYGGTTR-GYLSAMTSHTAYWNNYDCAYFILTRLFP 190 (211)
Q Consensus 133 ---~~~~~---~--e~~~ln~~~RIDY~Lqe~~~~~~e-~ylsal~sH~sYW~s~D~a~FIL~el~~ 190 (211)
..... . ....+|+++||||+||+ +.+| +||+||+||+|||+|+|||+|||+|||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~RiDy~Lq~---~~~~~~yl~~l~sH~sYW~s~Dva~Fil~~l~~ 227 (227)
T PF02862_consen 164 NTESNEDSSSDAEKKLSKLNGNGRIDYVLQE---GVLENSYLSALTSHFSYWESKDVALFILKQLYR 227 (227)
T ss_pred ccccccccchhhHHHHHhhcCCCccceecCC---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 00000 0 11458999999999999 8999 9999999999999999999999999986
No 2
>KOG2308|consensus
Probab=100.00 E-value=1.8e-39 Score=311.70 Aligned_cols=191 Identities=31% Similarity=0.507 Sum_probs=123.2
Q ss_pred CCceEEEecChHHHHHHhcCCCCCCCC-CCCCccccccccccccCCCcccccccccccccccCcCceeecccCCCCCCcc
Q psy18227 2 WLDNLFCLGSPLAVFLALRVPRGHHGN-HLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPLY 80 (211)
Q Consensus 2 ~V~~lF~~GSPlg~fl~~r~~~~~~~~-~~~~~~~c~~~yNIfhp~DPvAyRlEPli~~~~~~~~p~~ip~~~~~~~~~~ 80 (211)
+|++||++|||||+||++||....+.. ...+.+.|++|||||||+|||||||||||+++|+.++|+.|||++++++.++
T Consensus 513 kV~~fFalGSPlgvFltlrG~d~~~~~~~~~~~p~C~~fyNIfHP~DPVAYRlEPlV~ke~~~i~Pv~Iph~r~~~~L~~ 592 (741)
T KOG2308|consen 513 KVDNFFALGSPLGVFLTLRGIDSYNELSRIVSRPACKRFYNIFHPTDPVAYRLEPLVVKEMAHIRPVKIPHHRGSKRLHS 592 (741)
T ss_pred chhheeeecCchhhhheecccccccccccccccccccchhhcCCCCCchheecccccchhhcccCceeccccCCccchhh
Confidence 699999999999999999998665322 2356678999999999999999999999999999999999999999987653
Q ss_pred CCCCc--ccccCCCCCCCCCCCCCCCCCC---CCCc--ccccccccccCCcCCC----CCCC--CCCCCCC---------
Q psy18227 81 CDMPL--EFIIPSPSPSETSPPPLLENPP---PPQE--KSWKKWSLSFVKPAVG----PGSK--SNAQTQP--------- 138 (211)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~----~s~~--~~~~~~~--------- 138 (211)
..... .+..-.+.. .++++.+..+.. .+.+ ...+.+...+.....| .+.. .+..+++
T Consensus 593 ~~~~~~~~~~a~~~~~-~~~~~ks~~~~~~~~~s~~~~~~e~e~~~es~~~~~g~~~~~~~~~~~k~~~~~~~~a~~~~~ 671 (741)
T KOG2308|consen 593 ELKEFLEDIGADLKQS-FNDGLKSLQSNKNSLESATVVSKENETTAESEDRSTGETADNSAVAAKKAVKKPDGTASDPRM 671 (741)
T ss_pred hhccchhhhhhhcccc-cccchhccccccccccccccccccchhhhhhhcccccccccchhhhhhhhhcCCcccccChhh
Confidence 22111 110000000 011111100000 0000 0000000000000000 0000 0000000
Q ss_pred -----CCCCCCCCCceeEEeecCCCchHH----HHHHHhhhhhhcccchhhHHHHHHHhcCCCCCCC
Q psy18227 139 -----ESPYEGLEHRLDYALKDTYGGTTR----GYLSAMTSHTAYWNNYDCAYFILTRLFPTLELSS 196 (211)
Q Consensus 139 -----e~~~ln~~~RIDY~Lqe~~~~~~e----~ylsal~sH~sYW~s~D~a~FIL~el~~~~~~s~ 196 (211)
....+|.++|+||++|+ +++| +||+|++||++||.++|+|.|||+|+|+..+++.
T Consensus 672 ~~~~~~lg~Ln~~~r~d~~~~e---~~~e~~~~eylsa~sshs~yW~s~d~a~fl~~e~y~~~~~s~ 735 (741)
T KOG2308|consen 672 TPSDLRLGFLNATSRLDYVFQE---APIESSNLEYLSALSSHSEYWSSEDLALFLLTELYRSFGISN 735 (741)
T ss_pred ccccchhhhhcccccccccccc---cchhhhhHHHHhhhcccccceecchhHHHHHHHHHHhccccc
Confidence 11348899999999999 5555 8999999999999999999999999999999776
No 3
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=42.25 E-value=21 Score=26.78 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=25.1
Q ss_pred chHHHHHHHhhhhhhcccchhhHHHHHHH
Q psy18227 159 GTTRGYLSAMTSHTAYWNNYDCAYFILTR 187 (211)
Q Consensus 159 ~~~e~ylsal~sH~sYW~s~D~a~FIL~e 187 (211)
..+|.||..|..|--.|.++++..||.+.
T Consensus 75 ~~Le~yL~~l~~~~~l~~s~~~~~FL~~~ 103 (104)
T cd06885 75 LQLEKYLQAVVQDPRIANSDIFNSFLLNA 103 (104)
T ss_pred HHHHHHHHHHhcChhhccCHHHHHHHHhc
Confidence 34458999999999999999999999764
No 4
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=25.24 E-value=54 Score=25.23 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.5
Q ss_pred HHHHHHHhhhhhhcccchhhHHHH
Q psy18227 161 TRGYLSAMTSHTAYWNNYDCAYFI 184 (211)
Q Consensus 161 ~e~ylsal~sH~sYW~s~D~a~FI 184 (211)
++.||..|..|-..|.++++-.||
T Consensus 90 Le~FL~ri~~hp~L~~s~~~~~FL 113 (116)
T cd07284 90 LHKFLNRIADHPTLTFNEDFKIFL 113 (116)
T ss_pred HHHHHHHHHcCcccccChHHHHhh
Confidence 347999999999999999999987
No 5
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=23.11 E-value=57 Score=25.01 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHhhhhhhcccchhhHHHH
Q psy18227 161 TRGYLSAMTSHTAYWNNYDCAYFI 184 (211)
Q Consensus 161 ~e~ylsal~sH~sYW~s~D~a~FI 184 (211)
++.||..|..|-..|.++++-.||
T Consensus 94 Le~fL~~i~~~p~l~~s~~~~~FL 117 (120)
T cd06865 94 LEKYLNRLAAHPVIGLSDELRVFL 117 (120)
T ss_pred HHHHHHHHHcCceeecCcHHHHhc
Confidence 447999999999999999999997
No 6
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=22.26 E-value=66 Score=24.47 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.1
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFI 184 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FI 184 (211)
.+|.||..|..|--.|.|.++-.||
T Consensus 89 ~Le~fL~~i~~hp~l~~s~~l~~FL 113 (116)
T cd06860 89 ALHKFLNRIVEHPVLSFNEHLKVFL 113 (116)
T ss_pred HHHHHHHHHHcCcccccCcHHHHhh
Confidence 3448999999999999999999987
No 7
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=21.79 E-value=61 Score=25.28 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=22.9
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFIL 185 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FIL 185 (211)
.+|.||..|..|--.+.|+++..||-
T Consensus 102 ~Le~fL~~i~~~p~l~~s~~l~~FL~ 127 (129)
T cd06864 102 GLENFLLRVAGHPELCQDKIFLEFLT 127 (129)
T ss_pred HHHHHHHHHHcChhhhcCcHHHHhcC
Confidence 44489999999999999999999974
No 8
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=21.67 E-value=58 Score=24.31 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=22.8
Q ss_pred chHHHHHHHhhhhhhcccchhhHHHH
Q psy18227 159 GTTRGYLSAMTSHTAYWNNYDCAYFI 184 (211)
Q Consensus 159 ~~~e~ylsal~sH~sYW~s~D~a~FI 184 (211)
..++.||..|.+|--.+.++.+..||
T Consensus 86 ~~L~~fL~~i~~~p~l~~s~~~~~Fl 111 (114)
T cd06859 86 AALERFLRRIAAHPVLRKDPDFRLFL 111 (114)
T ss_pred HHHHHHHHHHhcChhhccCcHHHhhc
Confidence 34558999999999999999999887
No 9
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=20.89 E-value=54 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.1
Q ss_pred chHHHHHHHhhhhhhcccchhhHHHHHH
Q psy18227 159 GTTRGYLSAMTSHTAYWNNYDCAYFILT 186 (211)
Q Consensus 159 ~~~e~ylsal~sH~sYW~s~D~a~FIL~ 186 (211)
..+|.||..|.+|-.-+.+.++..||-+
T Consensus 96 ~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 96 AALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred HHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 3455899999999999999999999854
No 10
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=18.48 E-value=90 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=22.7
Q ss_pred chHHHHHHHhhhhh--hcccchhhHHHH
Q psy18227 159 GTTRGYLSAMTSHT--AYWNNYDCAYFI 184 (211)
Q Consensus 159 ~~~e~ylsal~sH~--sYW~s~D~a~FI 184 (211)
..+|.||..|..|- .++.+..+..|+
T Consensus 78 ~~Le~yL~~l~~~~~~~l~~s~~~~~FL 105 (108)
T cd06897 78 VGLEAFLRALLNDEDSRWRNSPAVKEFL 105 (108)
T ss_pred HHHHHHHHHHHcCCccchhcCHHHHHHh
Confidence 34559999999999 999999999887
Done!