Query psy18227
Match_columns 211
No_of_seqs 136 out of 374
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 16:57:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2czq_A Cutinase-like protein; 15.8 61 0.0021 26.1 1.7 42 145-189 154-202 (205)
2 1pk1_B Sex COMB on midleg CG94 15.0 49 0.0017 23.2 0.8 20 168-187 10-29 (89)
3 3lui_A Sorting nexin-17, SNX17 11.9 95 0.0032 22.2 1.7 28 160-187 81-108 (115)
4 2i4k_A Sorting nexin-1, SNX1; 9.8 75 0.0026 22.8 0.5 25 160-184 100-124 (128)
5 3hpc_X SNX5 protein; sprting n 9.3 1.7E+02 0.0058 22.6 2.4 26 160-185 123-148 (161)
6 3qpa_A Cutinase; alpha-beta hy 8.3 1.2E+02 0.0042 24.3 1.2 42 145-189 149-193 (197)
7 3iq2_A Sorting nexin-7; SNX7, 7.9 2.3E+02 0.0077 20.9 2.5 26 161-186 98-123 (138)
8 1xte_A Serine/threonine-protei 6.9 1.7E+02 0.0057 22.1 1.3 27 160-186 87-113 (154)
9 1qoz_A AXE, acetyl xylan ester 6.8 1.3E+02 0.0045 23.9 0.7 41 145-188 164-206 (207)
10 2gle_A Neurabin-1; SAM domain, 6.5 2.2E+02 0.0075 18.4 1.6 15 171-185 3-17 (74)
No 1
>2czq_A Cutinase-like protein; alpha/beta hydrolase fold, hydrolase; HET: CIT; 1.05A {Cryptococcus SP}
Probab=15.85 E-value=61 Score=26.14 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=28.7
Q ss_pred CCCceeEEeecCCCchHHHHH---HHhhhhhhcccc----hhhHHHHHHHhc
Q psy18227 145 LEHRLDYALKDTYGGTTRGYL---SAMTSHTAYWNN----YDCAYFILTRLF 189 (211)
Q Consensus 145 ~~~RIDY~Lqe~~~~~~e~yl---sal~sH~sYW~s----~D~a~FIL~el~ 189 (211)
..+.+||+..- .++=+-- .-+.+|.+|..+ .+.|.||+.+|-
T Consensus 154 ~~r~~~~C~~g---D~iC~~~~~~~~~~~H~~Y~~~~~~~~~Aa~Fv~~~l~ 202 (205)
T 2czq_A 154 VSKTLDVCAYG---DGVCDTAHGFGINAQHLSYPSDQGVQTMGYKFAVNKLG 202 (205)
T ss_dssp GGGEEEECCTT---CTTTCTTTCCSSCHHHHCGGGCHHHHHHHHHHHHHHTT
T ss_pred ccceeEecCCC---CcccCCCCCCCCCccccCcccCcccHHHHHHHHHHHhc
Confidence 45678888764 3222111 246899999877 579999999883
No 2
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=14.97 E-value=49 Score=23.21 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=16.2
Q ss_pred hhhhhhcccchhhHHHHHHH
Q psy18227 168 MTSHTAYWNNYDCAYFILTR 187 (211)
Q Consensus 168 l~sH~sYW~s~D~a~FIL~e 187 (211)
+.+....|+-+||+.||-+.
T Consensus 10 ~~~~v~~WsvedV~~wl~~~ 29 (89)
T 1pk1_B 10 LRSQPIDWTIEEVIQYIESN 29 (89)
T ss_dssp -CCCGGGCCHHHHHHHHHHH
T ss_pred CCCCchhCCHHHHHHHHHHH
Confidence 46788999999999998543
No 3
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=11.91 E-value=95 Score=22.21 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=23.9
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFILTR 187 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FIL~e 187 (211)
.+|.||..|..|-..+.++.+-.|+-..
T Consensus 81 ~Le~yL~~l~~~p~l~~s~~~~~FL~~~ 108 (115)
T 3lui_A 81 QLEKYMQAVRQDPLLGSSETFNSFLRRA 108 (115)
T ss_dssp HHHHHHHHHHHSHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhhcChHHHHHHCcC
Confidence 3448999999999999999999998653
No 4
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=9.81 E-value=75 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.5
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFI 184 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FI 184 (211)
.+|.||..|.+|-....++.+..||
T Consensus 100 ~Le~fL~~l~~~p~l~~s~~~~~FL 124 (128)
T 2i4k_A 100 ALERYLQRIVNHPTMLQDPDVREFL 124 (128)
T ss_dssp HHHHHHHHHHHCHHHHCSHHHHTTT
T ss_pred HHHHHHHHHHcCcccccChHHHHhh
Confidence 3458999999999999999888876
No 5
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=9.27 E-value=1.7e+02 Score=22.60 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.5
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFIL 185 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FIL 185 (211)
.+|.||..|.+|-.-+.+.++-.||=
T Consensus 123 ~Le~FL~ri~~HP~L~~d~~~~~FL~ 148 (161)
T 3hpc_X 123 SHEVFLQRLSSHPVLSKDRNFHVFLE 148 (161)
T ss_dssp HHHHHHHHHHHSTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCcHHHhhcC
Confidence 46789999999999999999999984
No 6
>3qpa_A Cutinase; alpha-beta hydrolase fold, esterase, hydrolase, mono- phosphorylated serine residue, secreted; HET: MIR; 0.85A {Nectria haematococca} PDB: 3qpc_A* 1cex_A 1oxm_A* 1cui_A 1cus_A 2cut_A 1cuj_A 1cuy_A 1xzl_A* 1xzk_A* 1xzm_A* 1cuh_A 1cuu_A 3esc_A* 1cua_A* 3esa_A* 3esb_A* 3ef3_A* 3esd_A* 1cux_A ...
Probab=8.27 E-value=1.2e+02 Score=24.32 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCCceeEEeecCCCchHH-HHHHHhhhhhhcccch--hhHHHHHHHhc
Q psy18227 145 LEHRLDYALKDTYGGTTR-GYLSAMTSHTAYWNNY--DCAYFILTRLF 189 (211)
Q Consensus 145 ~~~RIDY~Lqe~~~~~~e-~ylsal~sH~sYW~s~--D~a~FIL~el~ 189 (211)
..+-+||+... .++= .=..-+.+|.+|-.+. +.|.||..+|-
T Consensus 149 ~~k~~~~C~~g---D~vC~~g~~~~~aH~~Y~~~~~~~Aa~Fv~~~l~ 193 (197)
T 3qpa_A 149 ADRTKVFCNTG---DLVCTGSLIVAAPHLAYGPDARGPAPEFLIEKVR 193 (197)
T ss_dssp GGGEEEECCTT---CGGGGTCCCCCGGGGCCHHHHHTHHHHHHHHHHH
T ss_pred HhHeeeecCCc---CCcCCCCCCCchhhhChhhcHHHHHHHHHHHHHH
Confidence 46788888775 4332 1122357999999875 78999998874
No 7
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=7.94 E-value=2.3e+02 Score=20.93 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHhhhhhhcccchhhHHHHHH
Q psy18227 161 TRGYLSAMTSHTAYWNNYDCAYFILT 186 (211)
Q Consensus 161 ~e~ylsal~sH~sYW~s~D~a~FIL~ 186 (211)
+|.||..|..|-.-..++.+..||-.
T Consensus 98 Le~fL~~l~~~p~l~~s~~~~~FL~~ 123 (138)
T 3iq2_A 98 LHKFLNRIADHPTLTFNEDFKIFLTA 123 (138)
T ss_dssp HHHHHHHHHHSTTGGGCHHHHHHHHT
T ss_pred HHHHHHHHHcCHhhhcChHHHhhhCC
Confidence 44899999999999999999999854
No 8
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=6.86 E-value=1.7e+02 Score=22.06 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=22.9
Q ss_pred hHHHHHHHhhhhhhcccchhhHHHHHH
Q psy18227 160 TTRGYLSAMTSHTAYWNNYDCAYFILT 186 (211)
Q Consensus 160 ~~e~ylsal~sH~sYW~s~D~a~FIL~ 186 (211)
.+|.||..|..|-..+.+..+..||-.
T Consensus 87 ~Le~yL~~l~~~p~l~~s~~l~~FL~~ 113 (154)
T 1xte_A 87 GLNEFIQNLVRYPELYNHPDVRAFLQM 113 (154)
T ss_dssp HHHHHHHHHTTCHHHHTSHHHHHHTTT
T ss_pred HHHHHHHHHHcChhhccChHHHHHhCC
Confidence 344899999999999999999999844
No 9
>1qoz_A AXE, acetyl xylan esterase; hydrolase, xylan degradation; HET: NAG; 1.90A {Trichoderma reesei} SCOP: c.69.1.30
Probab=6.79 E-value=1.3e+02 Score=23.94 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=26.3
Q ss_pred CCCceeEEeecCCCchHHHHHHHhhhhhhcccc--hhhHHHHHHHh
Q psy18227 145 LEHRLDYALKDTYGGTTRGYLSAMTSHTAYWNN--YDCAYFILTRL 188 (211)
Q Consensus 145 ~~~RIDY~Lqe~~~~~~e~ylsal~sH~sYW~s--~D~a~FIL~el 188 (211)
..+.+||+..- .++=+-=..+.+|.+|.++ .+.|.||+.+|
T Consensus 164 ~~r~~~~C~~g---D~iC~~~~~~~~H~~Y~~~~~~~Aa~fv~~~l 206 (207)
T 1qoz_A 164 ASKIKSYCDAA---DPYCCTGNDPNVHQGYGQEYGQQALAFINSQL 206 (207)
T ss_dssp GGGEEEECCTT---CSSSSSCCCHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred ccceeEEcCCC---CCccCCCCCchhHhhhhhchHHHHHHHHHHHh
Confidence 45678888764 2221110125899999974 56889998875
No 10
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=6.50 E-value=2.2e+02 Score=18.39 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=12.7
Q ss_pred hhhcccchhhHHHHH
Q psy18227 171 HTAYWNNYDCAYFIL 185 (211)
Q Consensus 171 H~sYW~s~D~a~FIL 185 (211)
.+.-|+.+||+.||-
T Consensus 3 ~v~~Ws~~~V~~WL~ 17 (74)
T 2gle_A 3 MVHEWSVQQVSHWLV 17 (74)
T ss_dssp CGGGCCSGGGHHHHH
T ss_pred CcccCCHHHHHHHHH
Confidence 467899999999984
Done!