RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18227
         (211 letters)



>gnl|CDD|217255 pfam02862, DDHD, DDHD domain.  The DDHD domain is 180 residues long
           and contains four conserved residues that may form a
           metal binding site. The domain is named after these four
           residues. This pattern of conservation of metal binding
           residues is often seen in phosphoesterase domains. This
           domain is found in retinal degeneration B proteins, as
           well as a family of probable phospholipases. It has been
           shown that this domain is found in a longer C terminal
           region that binds to PYK2 tyrosine kinase. These
           proteins have been called N-terminal domain-interacting
           receptor (Nir1, Nir2 and Nir3). This suggests that this
           region is involved in functionally important
           interactions in other members of this family.
          Length = 219

 Score =  122 bits (307), Expect = 1e-34
 Identities = 58/216 (26%), Positives = 79/216 (36%), Gaps = 33/216 (15%)

Query: 4   DNLFCLGSPLAVFLALR----VPRG----HHGNHLFPPSLCSRLYNVFHPSDPIAYRLEP 55
           +N F +GSPL +FL LR      R        +  +    C  LYN+FHP+DP+AYRLEP
Sbjct: 6   ENFFAVGSPLGLFLLLRGTNLGARSLSYVAGEDGTYGCPACKNLYNIFHPTDPVAYRLEP 65

Query: 56  LVMKNYFRIAPVSIHSYNASSKPLYC--------------------DMPLEFIIPSPSPS 95
           LV   Y  + PV I     S                                I      S
Sbjct: 66  LVDPEYANLKPVLIPHAKKSKLGALELLESLTNIGKAVKQSVGSTTWGAGNEIASGLRNS 125

Query: 96  ETSPPPLLENPPPPQEKSWKKWSLSFVKPAVGPGSKSNAQTQPESPYEGL--EHRLDYAL 153
             S     E        S    S   ++ +     +     + E     L    R+DY L
Sbjct: 126 SASRSSTDEKSADSSTISRLSPSNVELETSEFT-REEKKSERAELRLGALNGNGRIDYVL 184

Query: 154 KDTYGGTTRGYLSAMTSHTAYWNNYDCAYFILTRLF 189
               G     YLSA++SH +YW + D A F+L  + 
Sbjct: 185 --QEGVLENQYLSALSSHVSYWESEDVALFLLKEIL 218


>gnl|CDD|224976 COG2065, PyrR, Pyrimidine operon attenuation protein/uracil
           phosphoribosyltransferase [Nucleotide transport and
           metabolism].
          Length = 179

 Score = 29.2 bits (66), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 3   LDNLFCLGSPLAVFLALRVPRGH 25
           LD L   G P  + LA+ V RGH
Sbjct: 116 LDALVDYGRPAKIQLAVLVDRGH 138


>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family. 
          Length = 850

 Score = 28.2 bits (63), Expect = 3.5
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)

Query: 91  SPSPSETSPPPLLENPPPPQEKS 113
            P P ET PPP    PPPP E  
Sbjct: 638 PPPPVETEPPP---RPPPPPETD 657


>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
           uracil phosphoribosyltransferase; Provisional.
          Length = 176

 Score = 27.0 bits (61), Expect = 6.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 3   LDNLFCLGSPLAVFLALRVPRGH 25
           LD LF  G P  V LA+ V RGH
Sbjct: 115 LDALFDYGRPARVQLAVLVDRGH 137


>gnl|CDD|215575 PLN03100, PLN03100, Permease subunit of ER-derived-lipid
           transporter; Provisional.
          Length = 292

 Score = 27.1 bits (60), Expect = 7.4
 Identities = 10/31 (32%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 90  PSPSPSETSPPPLLENPPPPQE--KSWKKWS 118
             PS S        EN  P  E      KWS
Sbjct: 15  GHPSMSALEEETSSENNEPSSEAELPLSKWS 45


>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
           myosin-like Protein Serine/Threonine Kinases.
           Serine/threonine kinases (STKs), Class III myosin-like
           subfamily, catalytic (c) domain. STKs catalyze the
           transfer of the gamma-phosphoryl group from ATP to
           serine/threonine residues on protein substrates. The
           class III myosin-like subfamily is part of a larger
           superfamily that includes the catalytic domains of other
           protein STKs, protein tyrosine kinases, RIO kinases,
           aminoglycoside phosphotransferase, choline kinase, and
           phosphoinositide 3-kinase. Class III myosins are motor
           proteins with an N-terminal kinase catalytic domain and
           a C-terminal actin-binding motor domain. Class III
           myosins are present in the photoreceptors of
           invertebrates and vertebrates and in the auditory hair
           cells of mammals. The kinase domain of myosin III can
           phosphorylate several cytoskeletal proteins,
           conventional myosin regulatory light chains, and can
           autophosphorylate the C-terminal motor domain. Myosin
           III may play an important role in maintaining the
           structural integrity of photoreceptor cell microvilli.
           It may also function as a cargo carrier during
           light-dependent translocation, in photoreceptor cells,
           of proteins such as transducin and arrestin. The
           Drosophila class III myosin, called NinaC (Neither
           inactivation nor afterpotential protein C), is critical
           in normal adaptation and termination of photoresponse.
           Vertebrates contain two isoforms of class III myosin,
           IIIA and IIIB. This subfamily also includes mammalian
           NIK-like embryo-specific kinase (NESK), Traf2- and
           Nck-interacting kinase (TNIK), mitogen-activated protein
           kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
           MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
           some MAPK signaling pathways by activating a MAPK kinase
           kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
           activated either by a small GTP-binding protein or by an
           adaptor protein, which transmits the signal either
           directly to a MAP3K to start the triple kinase core
           cascade or indirectly through a mediator kinase, a
           MAP4K. MAPK signaling cascades are important in
           mediating cellular responses to extracellular signals.
          Length = 275

 Score = 26.9 bits (60), Expect = 7.5
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 17/51 (33%)

Query: 74  ASSKPLYCDM-PLE--FIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSF 121
           A  KP  CDM P+   F IP       +PPP L        KS + WS  F
Sbjct: 212 ADGKPPLCDMHPMRALFKIPR------NPPPTL--------KSPENWSKKF 248


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,124,966
Number of extensions: 1009705
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1264
Number of HSP's successfully gapped: 37
Length of query: 211
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 118
Effective length of database: 6,812,680
Effective search space: 803896240
Effective search space used: 803896240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)