RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18227
(211 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.012
Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 57/220 (25%)
Query: 25 HHGN--HLF--PPSL---CSRLYNVFH-----PSDPIAYRLEP-----LVMKNYF----- 62
HG+ H+ P + S+L F+ P++ A EP LV K F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--FLGYVS 69
Query: 63 -RIAPVSIHSYNASSKPLYCDMPLEFI----IPSPSPSETSPPPLLENPPPPQEKSWKKW 117
+ P + ++ + ++ I + + LL+ K+ K+
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK------LLQENDTTLVKT-KEL 122
Query: 118 SLSFVKPAVGPGSKSNAQTQP---ESPYEGLEHRLDYALKDTYGG--TTRGYLSAMTS-H 171
+++ + + ++ + EG +L A+ +GG T Y + +
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQL-VAI---FGGQGNTDDYFEELRDLY 177
Query: 172 TAYWNNYDCAYFI---LTRLFPTL-ELSSTPPDSSAYLPD 207
Y + + TL EL T D+
Sbjct: 178 QTY------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 29.6 bits (67), Expect = 0.70
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 74 ASSKPLYCDM-PLE--FIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSF 121
A+ Y P++ + + PP LE +E KK+ SF
Sbjct: 221 ATGAAPYHKYPPMKVLMLTL------QNDPPSLETGVQDKEML-KKYGKSF 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 1.2
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 18/83 (21%)
Query: 1 NWLDNLF-------CLGSPLAVFL---ALRVPRGHHGNHLFPPSLCSRLYNVFHPSDPIA 50
+LD +P + + ++R N + C +L + S +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESS--LN 364
Query: 51 YRLEPLVMKNYFR---IAPVSIH 70
LEP + F + P S H
Sbjct: 365 V-LEPAEYRKMFDRLSVFPPSAH 386
Score = 28.3 bits (62), Expect = 2.2
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 22/87 (25%)
Query: 20 RVPRGHHGNHLFPPSLCSRLYNVFHPSDPIAYRLEPLVMKNYFRIAPVSIHSYNASSKPL 79
+P+ + L PP L Y+ H I + L+ + + + +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYS--H----IGHHLKNIEHPERMTLFRM-----------V 496
Query: 80 YCDMPLEFI---IPSPSPSETSPPPLL 103
+ D F+ I S + + +L
Sbjct: 497 FLD--FRFLEQKIRHDSTAWNASGSIL 521
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle,
CAIR-1, BIS, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Length = 111
Score = 27.0 bits (59), Expect = 2.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 90 PSPSPSETSPPPLLENPPPPQEKSWKK 116
S +P+E + P E PP+ K
Sbjct: 5 SSGAPAEPAAPKSGEAETPPKHPGVLK 31
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human
spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 3s3m_A* 3l2q_A
3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A*
3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A*
3oyb_A* 3oyg_A* ...
Length = 395
Score = 27.4 bits (61), Expect = 4.4
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 95 SETSPPPLLENPPPPQEKSWKKWSLSFVKP 124
+ + P PQ+ + K+ + ++ P
Sbjct: 107 ASNKASGPILRPDRPQKP-FDKFFIDYIGP 135
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine
syntase, RNA binding, lyase; 2.00A {Escherichia coli}
SCOP: d.265.1.3 PDB: 1xpi_A
Length = 228
Score = 26.7 bits (60), Expect = 5.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 138 PESPYEGLEHRLDYALKDTYG 158
PE+ + L HRLD +DT G
Sbjct: 41 PEARFLELVHRLD---RDTSG 58
>2f4l_A Acetamidase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP:
b.23.3.1
Length = 297
Score = 26.9 bits (59), Expect = 5.1
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 25 HHGNHLFPPSLCSRLYNVFHPSDPIAYRLEP 55
HH +H R F + + P
Sbjct: 7 HHHHHHMKVVPAQRCVYSFSANMAPVEEVYP 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.1
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 110 QEKSWKKW--SLSFVKPAVGPGSKSNAQTQ 137
++++ KK SL P A +
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 26.5 bits (59), Expect = 7.3
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 17/51 (33%)
Query: 74 ASSKPLYCDM-PLE--FIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSF 121
A +P + ++ P+ I S PP L + KWS+ F
Sbjct: 216 AQIEPPHHELNPMRVLLKIA------KSDPPTL--------LTPSKWSVEF 252
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 26.2 bits (58), Expect = 7.6
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 74 ASSKPLYCDM-PLE--FIIPSPSPSETSPPPLLENPPPPQEKSWKKWSLSF 121
A KP Y D+ P+ F+IP T+PPP + WS +F
Sbjct: 219 AEGKPPYADIHPMRAIFMIP------TNPPPTFRK--------PELWSDNF 255
>2kl5_A Uncharacterized protein YUTD; structural genomics, protein
northeast structural genom consortium (NESG), target
SR232, PSI-2; NMR {Bacillus subtilis}
Length = 110
Score = 25.4 bits (56), Expect = 8.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 177 NYDCAYFILTRLFP 190
N+ CAYF+L R+
Sbjct: 89 NFGCAYFVLKRIRK 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.442
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,354,319
Number of extensions: 183694
Number of successful extensions: 620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 592
Number of HSP's successfully gapped: 27
Length of query: 211
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 122
Effective length of database: 4,216,824
Effective search space: 514452528
Effective search space used: 514452528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.1 bits)