RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18227
         (211 letters)



>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 31.0 bits (70), Expect = 0.042
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 86  EFIIPSPSPSETSPPPLLENPPPPQEKSWKKW 117
           E I+  PS      P    + P  ++ S ++ 
Sbjct: 18  EVILKPPSFDGV--PEFNASLPRRRDPSLEEI 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,068
Number of extensions: 38787
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 211
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,295,466
Effective search space: 168410580
Effective search space used: 168410580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)