BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18229
(111 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48180|ACH1_CAEEL Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis
elegans GN=acr-16 PE=2 SV=1
Length = 498
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIA-- 58
M +V +S V TV VLN H+RT ++H+M W R L L WIPWIL M+RP +T ++
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
Query: 59 MSNKMRELELKERTSKSLMANV 80
S K R S+SL+ N+
Sbjct: 360 FSTK------PNRHSESLIRNI 375
>sp|A8WQK3|ACH1_CAEBR Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis
briggsae GN=acr-16 PE=3 SV=2
Length = 499
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V +S V TV VLN H+RT ++H+M W R L L WIPWIL M+RP +T ++
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359
Query: 61 NKMRELELKERTSKSLMANV 80
+ R S+SL+ N+
Sbjct: 360 FASK----PNRHSESLIRNI 375
>sp|Q494W8|CRFM7_HUMAN CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1
Length = 412
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R A
Sbjct: 211 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 268
Query: 61 NKMRELEL 68
+K R L
Sbjct: 269 HKQRRCSL 276
>sp|P36544|ACHA7_HUMAN Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens
GN=CHRNA7 PE=1 SV=5
Length = 502
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R A
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358
Query: 61 NKMRELEL 68
+K R L
Sbjct: 359 HKQRRCSL 366
>sp|Q866A2|ACHA7_MACMU Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta
GN=CHRNA7 PE=2 SV=1
Length = 502
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R A
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358
Query: 61 NKMRELEL 68
+K R L
Sbjct: 359 HKQRRCSL 366
>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus
norvegicus GN=Chrna7 PE=1 SV=2
Length = 502
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR 54
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVR 354
>sp|P02712|ACHB_TORCA Acetylcholine receptor subunit beta OS=Torpedo californica
GN=CHRNB1 PE=1 SV=1
Length = 493
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 38/48 (79%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P L +QRP
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRP 359
>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus
GN=CHRNA7 PE=1 SV=1
Length = 502
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R A
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358
Query: 61 NKMRELEL 68
+K R L
Sbjct: 359 HKQRRCSL 366
>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus
GN=Chrna7 PE=2 SV=1
Length = 502
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR 54
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVR 354
>sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens
GN=CHRNA4 PE=1 SV=2
Length = 627
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH--KKITRKTIA 58
M V S+V+TV VLN HHR+ +H MP W+R +FL +P +L M+RP K R+ I
Sbjct: 314 MIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLDIVPRLLLMKRPSVVKDNCRRLIE 373
Query: 59 MSNKM 63
+KM
Sbjct: 374 SMHKM 378
>sp|P54131|ACHA7_BOVIN Neuronal acetylcholine receptor subunit alpha-7 OS=Bos taurus
GN=CHRNA7 PE=2 SV=1
Length = 499
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 32/54 (59%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR 54
M +V SVV+TV+VL YHH D +MP W R + L W W L M+RP + R
Sbjct: 298 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVVLLNWCAWFLRMKRPGEDKVR 351
>sp|Q19AE6|ACHA4_MUSPF Neuronal acetylcholine receptor subunit alpha-4 OS=Mustela putorius
furo GN=CHRNA4 PE=2 SV=1
Length = 627
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN HHR+ +H MP W+R +FL +P +L M+RP
Sbjct: 316 MVFVTLSIVITVFVLNVHHRSPRTHTMPAWVRRVFLDVVPRLLLMKRP 363
>sp|P26153|ACHB4_CHICK Neuronal acetylcholine receptor subunit beta-4 (Fragment) OS=Gallus
gallus GN=CHRNB4 PE=2 SV=1
Length = 470
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V S+V +V VLN HHR+ +H MP W++ +FL+ +P L M+RP R+ A
Sbjct: 283 MVLVTFSIVTSVCVLNVHHRSPSTHTMPPWVKLVFLERLPAYLFMKRPENNSPRQKPANC 342
Query: 61 NKMRELEL 68
K R L
Sbjct: 343 KKTRAENL 350
>sp|P49579|ACHB_XENLA Acetylcholine receptor subunit beta (Fragment) OS=Xenopus laevis
GN=chrnb1 PE=2 SV=1
Length = 489
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 37/51 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51
M +V SV+ +VVVLN HHR+ ++H MP W++ +F+ ++P LC++RP +
Sbjct: 307 MTLVTFSVIFSVVVLNLHHRSPNTHHMPQWVKQIFIHYLPKYLCIRRPKPE 357
>sp|P09480|ACHA2_CHICK Neuronal acetylcholine receptor subunit alpha-2 OS=Gallus gallus
GN=CHRNA2 PE=2 SV=1
Length = 528
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+++TV VLN HHR+ +H MP W+R FL +IP L M+RP
Sbjct: 311 MIFVTLSIIITVFVLNVHHRSPSTHTMPHWVRSFFLGFIPRWLFMKRP 358
>sp|Q23022|ACH5_CAEEL Acetylcholine receptor subunit alpha-type unc-38 OS=Caenorhabditis
elegans GN=unc-38 PE=2 SV=1
Length = 511
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M MV SVV+TV+ LN H RT +H MP+W++ +FL+W+P +L M+RP
Sbjct: 328 MVMVTLSVVVTVISLNLHFRTPTTHLMPNWVKKVFLKWLPKLLFMRRP 375
>sp|P11230|ACHB_HUMAN Acetylcholine receptor subunit beta OS=Homo sapiens GN=CHRNB1 PE=1
SV=3
Length = 501
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M +V SV+L+VVVLN HHR+ +H+MP W+R +F+ +P L ++RP
Sbjct: 316 MVLVTFSVILSVVVLNLHHRSPHTHQMPLWVRQIFIHKLPLYLRLKRP 363
>sp|P18845|ACHA3_CARAU Neuronal acetylcholine receptor subunit alpha-3 OS=Carassius
auratus GN=chrna3 PE=2 SV=1
Length = 512
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W+R +FL+ +P ++ M+RP
Sbjct: 304 MIFVTLSIVITVFVLNVHYRTPMTHTMPSWVRTVFLRALPRVMLMRRP 351
>sp|P25109|ACHB_RAT Acetylcholine receptor subunit beta OS=Rattus norvegicus GN=Chrnb1
PE=2 SV=1
Length = 501
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M +V SV+L+VVVLN HHR+ +H+MP W+R +F+ +P L ++RP
Sbjct: 316 MILVTFSVILSVVVLNLHHRSPHTHQMPFWVRQIFIHKLPPYLGLKRP 363
>sp|P04758|ACHB_BOVIN Acetylcholine receptor subunit beta OS=Bos taurus GN=CHRNB1 PE=2
SV=1
Length = 505
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M +V SV+L+VVVLN HHR+ +H+MP W+R +F+ +P L ++RP
Sbjct: 317 MVLVTFSVILSVVVLNLHHRSPHTHQMPLWVRQIFIHKLPLYLGLKRP 364
>sp|P09482|ACHA4_CHICK Neuronal acetylcholine receptor subunit alpha-4 OS=Gallus gallus
GN=CHRNA4 PE=1 SV=1
Length = 622
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+++TV VLN HHR+ +H MPDW+R +FL +P +L M+RP
Sbjct: 309 MIFVTLSIIITVFVLNVHHRSPRTHTMPDWVRRVFLDIVPRLLFMKRP 356
>sp|P09484|ACHB2_CHICK Neuronal acetylcholine receptor subunit beta-2 OS=Gallus gallus
GN=CHRNB2 PE=1 SV=1
Length = 491
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 35/50 (70%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHK 50
M +V S+V +V VLN HHR+ +H MP W+R LFL+ +P +L M++P +
Sbjct: 298 MVLVTFSIVTSVCVLNVHHRSPTTHTMPPWVRTLFLRKLPALLFMKQPQQ 347
>sp|P09690|ACHB_MOUSE Acetylcholine receptor subunit beta OS=Mus musculus GN=Chrnb1 PE=2
SV=1
Length = 501
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M +V SV+L+VVVLN HHR+ +H+MP W+R +F+ +P L ++RP
Sbjct: 316 MVLVTFSVILSVVVLNLHHRSPHTHQMPFWVRQIFIHKLPPYLGLKRP 363
>sp|P19370|ACHB2_CARAU Neuronal acetylcholine receptor subunit beta-2 (Fragment)
OS=Carassius auratus GN=chrnb2 PE=2 SV=1
Length = 459
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRK 55
M +V S+V +V VLN HHR+ +H MP+W++ +FL +P L M+RP + R+
Sbjct: 275 MVLVTFSIVTSVCVLNVHHRSPSTHYMPEWVKCVFLHKLPAFLLMRRPGRSNVRE 329
>sp|P49581|ACHA6_CHICK Neuronal acetylcholine receptor subunit alpha-6 OS=Gallus gallus
GN=CHRNA6 PE=2 SV=1
Length = 494
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W++ +FL +P +L MQRP
Sbjct: 311 MIFVTLSIVITVFVLNIHYRTPTTHTMPKWVKTVFLSLLPKVLLMQRP 358
>sp|P43143|ACHA6_RAT Neuronal acetylcholine receptor subunit alpha-6 OS=Rattus
norvegicus GN=Chrna6 PE=2 SV=1
Length = 493
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51
M V S+V+TV VLN H+RT +H MP W++ +FLQ P IL M+RP K
Sbjct: 311 MIFVTLSIVVTVFVLNIHYRTPATHTMPKWVKTMFLQVFPSILMMRRPLDK 361
>sp|Q5IS77|ACHA4_PANTR Neuronal acetylcholine receptor subunit alpha-4 OS=Pan troglodytes
GN=CHRNA4 PE=2 SV=1
Length = 627
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH--KKITRKTIA 58
M V S+V+TV VLN HHR+ +H MP W+R +FL +P +L M+RP K R+ I
Sbjct: 314 MIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLDIVPRLLLMKRPSVVKDNCRRLIE 373
Query: 59 MSNKM 63
+KM
Sbjct: 374 SMHKM 378
>sp|O70174|ACHA4_MOUSE Neuronal acetylcholine receptor subunit alpha-4 OS=Mus musculus
GN=Chrna4 PE=2 SV=2
Length = 629
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH--KKITRKTIA 58
M V S+V+TV VLN HHR+ +H MP W+R +FL +P +L M+RP K R+ I
Sbjct: 316 MIFVTLSIVITVFVLNVHHRSPRTHTMPAWVRRVFLDIVPRLLFMKRPSVVKDNCRRLIE 375
Query: 59 MSNKMRELE---LKERTSKSLMANVLN 82
+KM + + ++ ++ N
Sbjct: 376 SMHKMANAPRFWPEPESEPGILGDICN 402
>sp|P09483|ACHA4_RAT Neuronal acetylcholine receptor subunit alpha-4 OS=Rattus
norvegicus GN=Chrna4 PE=1 SV=3
Length = 630
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH--KKITRKTIA 58
M V S+V+TV VLN HHR+ +H MP W+R +FL +P +L M+RP K R+ I
Sbjct: 317 MIFVTLSIVITVFVLNVHHRSPRTHTMPAWVRRVFLDIVPRLLFMKRPSVVKDNCRRLIE 376
Query: 59 MSNKM 63
+KM
Sbjct: 377 SMHKM 381
>sp|Q9R0W9|ACHA6_MOUSE Neuronal acetylcholine receptor subunit alpha-6 OS=Mus musculus
GN=Chrna6 PE=2 SV=2
Length = 494
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51
M V S+V+TV VLN H+RT +H MP W++ +FLQ P IL M++P K
Sbjct: 311 MIFVTLSIVVTVFVLNIHYRTPATHTMPKWVKTIFLQAFPSILMMRKPLDK 361
>sp|Q8R493|ACHB4_MOUSE Neuronal acetylcholine receptor subunit beta-4 OS=Mus musculus
GN=Chrnb4 PE=2 SV=1
Length = 495
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
M +V S+V TV VLN HHR+ +H M W++ FL +P L M+RP +++ + S
Sbjct: 302 MVLVTFSIVTTVCVLNVHHRSPSTHTMASWVKECFLHKLPTFLFMKRPGLEVSPARVPHS 361
Query: 61 NKMRELELKERTSKSLMA 78
+++ L E TS S +
Sbjct: 362 SQL-HLTTAEATSTSALG 378
>sp|P09481|ACHA3_CHICK Neuronal acetylcholine receptor subunit alpha-3 OS=Gallus gallus
GN=CHRNA3 PE=2 SV=2
Length = 496
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W+R +FL +P I+ M RP
Sbjct: 303 MIFVTLSIVITVFVLNVHYRTPKTHTMPVWVRTIFLNLLPRIMFMTRP 350
>sp|Q5IS52|ACHA2_PANTR Neuronal acetylcholine receptor subunit alpha-2 OS=Pan troglodytes
GN=CHRNA2 PE=2 SV=1
Length = 529
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN HHR+ +H MP W+R L +P L M RP
Sbjct: 336 MIFVTLSIVITVFVLNVHHRSPSTHTMPHWVRGTLLGCVPRWLLMNRP 383
>sp|Q15822|ACHA2_HUMAN Neuronal acetylcholine receptor subunit alpha-2 OS=Homo sapiens
GN=CHRNA2 PE=1 SV=2
Length = 529
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN HHR+ +H MP W+R L +P L M RP
Sbjct: 336 MIFVTLSIVITVFVLNVHHRSPSTHTMPHWVRGALLGCVPRWLLMNRP 383
>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens
GN=CHRNA3 PE=1 SV=4
Length = 505
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W++ +FL +P ++ M RP
Sbjct: 312 MIFVTLSIVITVFVLNVHYRTPTTHTMPSWVKTVFLNLLPRVMFMTRP 359
>sp|P54247|ACHX_ONCVO Acetylcholine receptor non-alpha chain (Fragment) OS=Onchocerca
volvulus PE=2 SV=1
Length = 436
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M MV+ SV++TV+ LN H R +H MP W+++LFL+ +P IL M+RP
Sbjct: 266 MIMVSLSVLVTVISLNLHFRRPSTHRMPIWVKWLFLRILPKILFMRRP 313
>sp|Q07263|ACHA3_BOVIN Neuronal acetylcholine receptor subunit alpha-3 OS=Bos taurus
GN=CHRNA3 PE=2 SV=1
Length = 495
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W++ +FL +P ++ M RP
Sbjct: 302 MIFVTLSIVITVFVLNVHYRTPTTHTMPAWVKTIFLNLLPRVMFMTRP 349
>sp|P04757|ACHA3_RAT Neuronal acetylcholine receptor subunit alpha-3 OS=Rattus
norvegicus GN=Chrna3 PE=2 SV=1
Length = 499
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W++ +FL +P ++ M RP
Sbjct: 306 MIFVTLSIVITVFVLNVHYRTPTTHTMPTWVKAVFLNLLPRVMFMTRP 353
>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus
GN=Chrna3 PE=2 SV=1
Length = 499
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN H+RT +H MP W++ +FL +P ++ M RP
Sbjct: 306 MIFVTLSIVITVFVLNVHYRTPTTHTMPTWVKAVFLNLLPRVMFMTRP 353
>sp|P48182|ACR2_CAEEL Acetylcholine receptor subunit beta-type acr-2 OS=Caenorhabditis
elegans GN=acr-2 PE=2 SV=1
Length = 575
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 36/45 (80%)
Query: 6 SSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHK 50
++VV TVV++N + R+A SH+MP W+R +FL+++P +L M+RP +
Sbjct: 340 TAVVGTVVIVNIYFRSALSHKMPTWVRKVFLEFLPHLLVMKRPER 384
>sp|Q15825|ACHA6_HUMAN Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens
GN=CHRNA6 PE=2 SV=1
Length = 494
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKT 56
M V S+V+TV VLN H+RT +H MP W++ +FL+ +P +L M+ P K TR T
Sbjct: 311 MIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTVFLKLLPQVLLMRWPLDK-TRGT 365
>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1
PE=2 SV=1
Length = 516
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKI 52
M + S+ +TVVVLN H R+ +H M W+R +F+ +P +L M+RPH ++
Sbjct: 311 MILDTFSICVTVVVLNVHFRSPQTHTMSPWVRRVFIHVLPRLLVMRRPHYRL 362
>sp|Q5IS76|ACHA6_PANTR Neuronal acetylcholine receptor subunit alpha-6 OS=Pan troglodytes
GN=CHRNA6 PE=2 SV=1
Length = 494
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKT 56
M V S+V+TV VLN H+RT +H MP W++ +FL+ +P +L M+ P K TR T
Sbjct: 311 MIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTVFLKLLPQVLLMRWPLDK-TRGT 365
>sp|Q9U298|ACH8_CAEEL Neuronal acetylcholine receptor subunit eat-2 OS=Caenorhabditis
elegans GN=eat-2 PE=2 SV=1
Length = 474
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 3 MVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRK 55
++ S+ +++++N R +H M DW R++FL+W+PW L M RP R
Sbjct: 307 ILGLSICASLIIVNIFFRHPKTHRMGDWTRYVFLEWLPWFLLMSRPEHTFCRP 359
>sp|P02710|ACHA_TORCA Acetylcholine receptor subunit alpha OS=Torpedo californica
GN=CHRNA1 PE=1 SV=1
Length = 461
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWIL---CMQRPHK-KITRKT 56
M V SS+++TVVV+N HHR+ +H MP W+R +F+ IP ++ M+R K K K
Sbjct: 306 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKI 365
Query: 57 IAMSNKMRELELKERTSKSLMANVLNIDDDFR 88
A + ++ K+ T + + L + D +
Sbjct: 366 FADDIDISDISGKQVTGEVIFQTPLIKNPDVK 397
>sp|Q60S81|ACH8_CAEBR Neuronal acetylcholine receptor subunit eat-2 OS=Caenorhabditis
briggsae GN=eat-2 PE=3 SV=3
Length = 481
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 3 MVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
++ S+ ++++ +N +R H M DW R++FL+W+PW L M RP
Sbjct: 305 ILGVSICVSLITVNIFYRHPKMHRMGDWTRYIFLEWLPWFLLMSRP 350
>sp|P22456|ACHAA_XENLA Acetylcholine receptor subunit alpha-1-A OS=Xenopus laevis
GN=chrna1-a PE=2 SV=1
Length = 457
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWIL---CMQRPHKKITRKTI 57
M V +S+V+TV+V+N HHR+ +H MP W++ +F++ IP ++ M+RP + +K I
Sbjct: 302 MVFVIASIVITVIVINTHHRSPSTHIMPQWLKKIFIETIPRVMFFSTMKRPAQDQHKKKI 361
>sp|P02711|ACHA_TORMA Acetylcholine receptor subunit alpha OS=Torpedo marmorata GN=CHRNA1
PE=1 SV=1
Length = 461
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWIL---CMQRPHK-KITRKT 56
M V SS+++TVVV+N HHR+ +H MP W+R +F+ IP ++ M+R K K K
Sbjct: 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQENKI 365
Query: 57 IAMSNKMRELELKERTSKSLMANVLNIDDDFR 88
A + ++ K+ T + + L + D +
Sbjct: 366 FADDIDISDISGKQVTGEVIFQTPLIKNPDVK 397
>sp|P12389|ACHA2_RAT Neuronal acetylcholine receptor subunit alpha-2 OS=Rattus
norvegicus GN=Chrna2 PE=2 SV=2
Length = 511
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN HHR+ +H MP+W+R L +P L M RP
Sbjct: 313 MIFVTLSIVITVFVLNVHHRSPSTHNMPNWVRVALLGRVPRWLMMNRP 360
>sp|Q91X60|ACHA2_MOUSE Neuronal acetylcholine receptor subunit alpha-2 OS=Mus musculus
GN=Chrna2 PE=2 SV=1
Length = 512
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
M V S+V+TV VLN HHR+ +H MP+W+R L +P L M RP
Sbjct: 313 MIFVTLSIVITVFVLNVHHRSPSTHNMPNWVRVALLGRVPRWLMMNRP 360
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,449,025
Number of Sequences: 539616
Number of extensions: 1019507
Number of successful extensions: 4102
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3972
Number of HSP's gapped (non-prelim): 120
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)