Query psy18229
Match_columns 111
No_of_seqs 194 out of 597
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:00:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oed_B Acetylcholine receptor 99.3 3.9E-14 1.3E-18 108.2 -4.5 51 1-51 72-122 (250)
2 1oed_C Acetylcholine receptor 99.3 4.1E-14 1.4E-18 108.6 -5.1 51 1-51 72-122 (260)
3 4aq5_E Acetylcholine receptor 99.2 1.7E-13 5.8E-18 112.5 -3.7 51 1-51 290-340 (488)
4 1oed_E Acetylcholine receptor 99.2 8.6E-14 2.9E-18 106.8 -5.1 51 1-51 73-124 (260)
5 4aq5_C Acetylcholine receptor 99.2 3E-13 1E-17 111.8 -3.9 51 1-51 317-368 (522)
6 4aq5_B Acetylcholine receptor 99.2 3.8E-13 1.3E-17 110.5 -4.1 51 1-51 312-362 (493)
7 4aq5_A Acetylcholine receptor 99.1 7.3E-13 2.5E-17 108.1 -4.1 51 1-51 306-359 (461)
8 1oed_A Acetylcholine receptor 99.1 4.9E-13 1.7E-17 100.9 -5.1 50 1-50 72-124 (227)
9 3rqw_A ELIC pentameric ligand 97.7 2.6E-07 8.9E-12 71.3 -6.6 42 1-42 270-311 (322)
10 2lly_A Neuronal acetylcholine 97.4 5.1E-06 1.8E-10 58.0 -2.9 40 1-40 78-118 (137)
11 3tlw_A GLR4197 protein, GLIC; 96.2 5.9E-05 2E-09 57.9 -6.4 37 1-37 267-305 (321)
12 3rhw_A Avermectin-sensitive gl 95.5 7.3E-05 2.5E-09 58.1 -8.6 45 1-45 284-329 (347)
13 2ksr_A Neuronal acetylcholine 92.2 0.0056 1.9E-07 43.7 -3.5 26 1-26 99-124 (164)
14 2bg9_E Acetylcholine receptor 87.8 0.023 7.9E-07 44.4 -3.7 26 1-26 283-308 (370)
15 2bg9_C Acetylcholine receptor 87.4 0.022 7.6E-07 44.6 -4.0 26 1-26 281-306 (369)
16 2bg9_B Acetylcholine receptor 86.9 0.025 8.7E-07 44.2 -4.0 26 1-26 279-304 (370)
17 2bg9_A Acetylcholine receptor 84.4 0.035 1.2E-06 43.4 -4.3 25 1-25 282-306 (370)
No 1
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.29 E-value=3.9e-14 Score=108.24 Aligned_cols=51 Identities=51% Similarity=0.925 Sum_probs=19.6
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~ 51 (111)
|++|++|++.|++|+|+|||++.+|+||+|+|++|++|+|++|||++|+++
T Consensus 72 m~~v~~sl~~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~~ 122 (250)
T 1oed_B 72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT 122 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCcc
Confidence 567899999999999999999999999999999999999999999999864
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.28 E-value=4.1e-14 Score=108.63 Aligned_cols=51 Identities=33% Similarity=0.588 Sum_probs=19.7
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~ 51 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++|++|+|++|||++|+++
T Consensus 72 m~~v~~s~~~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~ 122 (260)
T 1oed_C 72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADES 122 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred HHHHHHHHHHHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCccc
Confidence 568899999999999999999999999999999999999999999999864
No 3
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.24 E-value=1.7e-13 Score=112.47 Aligned_cols=51 Identities=33% Similarity=0.525 Sum_probs=24.7
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~ 51 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||++|+++
T Consensus 290 m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~ 340 (488)
T 4aq5_E 290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSE 340 (488)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSTTTCC-------------------------
T ss_pred HHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCccc
Confidence 568899999999999999999999999999999999999999999999764
No 4
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.24 E-value=8.6e-14 Score=106.84 Aligned_cols=51 Identities=37% Similarity=0.606 Sum_probs=19.5
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee-CCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ-RPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~-~p~~~ 51 (111)
|++|++|++.|++|+|+|||++.+|+||+|+|++|++|+|++|||+ +|+++
T Consensus 73 m~~v~~sl~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~ 124 (260)
T 1oed_E 73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEE 124 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCccc
Confidence 5678999999999999999999999999999999999999999999 99764
No 5
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.20 E-value=3e-13 Score=111.83 Aligned_cols=51 Identities=33% Similarity=0.525 Sum_probs=23.7
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee-CCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ-RPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~-~p~~~ 51 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||+ +|+++
T Consensus 317 m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~ 368 (522)
T 4aq5_C 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIE 368 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCC---------------------------
T ss_pred HHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCcc
Confidence 5688999999999999999999999999999999999999999999 98654
No 6
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.19 E-value=3.8e-13 Score=110.49 Aligned_cols=51 Identities=51% Similarity=0.925 Sum_probs=23.5
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~ 51 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||++|+++
T Consensus 312 m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~ 362 (493)
T 4aq5_B 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT 362 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTC--------------------------
T ss_pred HHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCccc
Confidence 567899999999999999999999999999999999999999999999764
No 7
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.15 E-value=7.3e-13 Score=108.12 Aligned_cols=51 Identities=45% Similarity=0.883 Sum_probs=23.5
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceee---eeCCCCc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILC---MQRPHKK 51 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~---m~~p~~~ 51 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|| |++|+++
T Consensus 306 m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~~ 359 (461)
T 4aq5_A 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKE 359 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTTC-----------------------------
T ss_pred HHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCcc
Confidence 56789999999999999999999999999999999999999999 9998753
No 8
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.14 E-value=4.9e-13 Score=100.86 Aligned_cols=50 Identities=44% Similarity=0.874 Sum_probs=19.5
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee---CCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ---RPHK 50 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~---~p~~ 50 (111)
|++|++|++.|++|+|+|||+|.+|+||+|+|++|++|+|++|||+ +|++
T Consensus 72 m~~v~~sl~~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~ 124 (227)
T 1oed_A 72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK 124 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcc
Confidence 5678999999999999999999999999999999999999999995 7764
No 9
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=97.75 E-value=2.6e-07 Score=71.26 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=37.8
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccce
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWI 42 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~l 42 (111)
|+++++|++.+++|+++|||++.+|+||+|+|++|+..+..+
T Consensus 270 ~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~~fl~~~~~~ 311 (322)
T 3rqw_A 270 YGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAI 311 (322)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHccCccccCcchHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999887544
No 10
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=97.45 E-value=5.1e-06 Score=57.96 Aligned_cols=40 Identities=40% Similarity=0.542 Sum_probs=34.6
Q ss_pred CEeeheehheeeeEEEcccCCCCCCCC-ChhhHHhhhcccc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHEM-PDWIRFLFLQWIP 40 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~m-P~WvR~l~L~~lp 40 (111)
|+++++|++.|++|+|+|||+|++|+| |.|++++++-..+
T Consensus 78 ~~~v~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr~~lwif~ 118 (137)
T 2lly_A 78 MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFI 118 (137)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCSSCCSSCSSSHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhHHhcCCccCccchHHHHHHHHHHHH
Confidence 457889999999999999999999999 5899999984433
No 11
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=96.19 E-value=5.9e-05 Score=57.93 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.6
Q ss_pred CEeeheehheeeeEEEcccCCCCCC--CCChhhHHhhhc
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSH--EMPDWIRFLFLQ 37 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~--~mP~WvR~l~L~ 37 (111)
|++|++|++.+++|+++||+++..+ +||+|+|++|.-
T Consensus 267 ~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~ 305 (321)
T 3tlw_A 267 YLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPV 305 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehH
Confidence 4678899999999999999999775 899999998764
No 12
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=95.47 E-value=7.3e-05 Score=58.10 Aligned_cols=45 Identities=7% Similarity=0.191 Sum_probs=39.6
Q ss_pred CEeeheehheeeeEEEcccCCCCC-CCCChhhHHhhhccccceeee
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADS-HEMPDWIRFLFLQWIPWILCM 45 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~-~~mP~WvR~l~L~~lp~lL~m 45 (111)
|++|.+|++.+++|.+++++++.. ++||+|++.+++.++|.++++
T Consensus 284 ~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i 329 (347)
T 3rhw_A 284 MTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV 329 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 457789999999999999988755 689999999999999998876
No 13
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=92.19 E-value=0.0056 Score=43.70 Aligned_cols=26 Identities=46% Similarity=0.727 Sum_probs=23.6
Q ss_pred CEeeheehheeeeEEEcccCCCCCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHE 26 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~ 26 (111)
|+++++|++.|++|+|+|||++.+|+
T Consensus 99 m~~v~~sll~tv~Vl~~~~r~~~~~~ 124 (164)
T 2ksr_A 99 MVLVTFSIVTSVCVLNVHHRSPTTHT 124 (164)
T ss_dssp HHHHHHHHHTHHHHHHHHTSSCCCCS
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCC
Confidence 46788999999999999999999887
No 14
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=87.79 E-value=0.023 Score=44.42 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=23.3
Q ss_pred CEeeheehheeeeEEEcccCCCCCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHE 26 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~ 26 (111)
|++|++|++.+++|+|+|||+|.+|+
T Consensus 283 ~~~v~~sll~~v~v~~~~~r~~~~~~ 308 (370)
T 2bg9_E 283 MFVSLVIVTNCVIVLNVSLRTPNTHS 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSTTTCC
T ss_pred HHHHHHHHHHHhhheeeeccCCCCCc
Confidence 46788999999999999999999886
No 15
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=87.42 E-value=0.022 Score=44.55 Aligned_cols=26 Identities=42% Similarity=0.625 Sum_probs=23.4
Q ss_pred CEeeheehheeeeEEEcccCCCCCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHE 26 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~ 26 (111)
|++|++|++.+++|+|+|||+|.+|+
T Consensus 281 ~~~v~~sll~~v~v~~~~~r~~~~~~ 306 (369)
T 2bg9_C 281 MSLVTGVVVNCGIVLNFHFRTPSTHS 306 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTTCC
T ss_pred HHHHHHHHHHHhheeeeeccCCCCCc
Confidence 46788999999999999999999886
No 16
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=86.88 E-value=0.025 Score=44.24 Aligned_cols=26 Identities=62% Similarity=0.962 Sum_probs=23.3
Q ss_pred CEeeheehheeeeEEEcccCCCCCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSHE 26 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~ 26 (111)
|++|++|++.+++|+|+|||+|.+|+
T Consensus 279 ~~~v~~sll~~v~v~~~~~r~~~~~~ 304 (370)
T 2bg9_B 279 MILVAFSVILSVVVLNLHHRSPNTHE 304 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTCC
T ss_pred HHHHHHHHHHHHHhhhhhccCCCCCc
Confidence 46788999999999999999998886
No 17
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=84.35 E-value=0.035 Score=43.39 Aligned_cols=25 Identities=52% Similarity=0.877 Sum_probs=22.5
Q ss_pred CEeeheehheeeeEEEcccCCCCCC
Q psy18229 1 MFMVASSVVLTVVVLNYHHRTADSH 25 (111)
Q Consensus 1 Mvlv~lSlv~Tv~VLn~h~r~~~~~ 25 (111)
|++|++|++.+++|+|+|||++.+|
T Consensus 282 ~~~v~~sl~~~~~v~~~~~r~~~~~ 306 (370)
T 2bg9_A 282 MIFVISSIIVTVVVINTHHRSPSTH 306 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTTC
T ss_pred HHHHHHHHHHHHHHHhhhccCcccc
Confidence 4678899999999999999999887
Done!