RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18229
         (111 letters)



>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V   +V   +VLN+H RT  +H +   ++ +FL+ +P IL M R  +          
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131

Query: 61  NKMRE------LELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSE 105
              R        + +E  +    + ++      RH     ++    F  + 
Sbjct: 132 KLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNN 182


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P  L +QRP    +  +    
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131

Query: 61  NKMRELELKERTSKS 75
                 E   R    
Sbjct: 132 ISRANDEYFIRKPAG 146


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 52.0 bits (124), Expect = 7e-10
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M  V SS+++TVVV+N HHR+  +H MP W+R +F+  IP ++      +    K     
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQ-ENK 130

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
               ++++ + + K +   V+      ++    S      +I 
Sbjct: 131 IFADDIDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIA 173


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKIT------- 53
           MF+    V+  V+VLN   RT ++H + + I+ LFL ++P  L MQ    + T       
Sbjct: 73  MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132

Query: 54  -RKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQ 110
            R +  +  K  E  LK+  S+ +     +     R    +S  +    +     L+ 
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLAN 190


>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 186

 Score = 23.3 bits (50), Expect = 6.7
 Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 54 RKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASS 94
          R  +  S K R L  + +++K + A ++ +  +     AS+
Sbjct: 23 RLRLLKSGKPR-LVAR-KSNKHVRAQLVTLGPNGDDTLASA 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,475
Number of extensions: 14905
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 9
Length of query: 111
Length of database: 2,407,596
Length adjustment: 70
Effective length of query: 41
Effective length of database: 1,446,496
Effective search space: 59306336
Effective search space used: 59306336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)