Query psy18230
Match_columns 112
No_of_seqs 107 out of 248
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:02:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2308|consensus 99.9 2E-27 4.4E-32 205.8 7.0 112 1-112 270-386 (741)
2 KOG2308|consensus 91.3 0.017 3.6E-07 51.7 -3.4 94 18-111 333-455 (741)
3 PF03959 FSH1: Serine hydrolas 72.9 3.2 7E-05 30.9 2.5 27 26-54 7-33 (212)
4 PF12146 Hydrolase_4: Putative 68.8 8.7 0.00019 24.6 3.5 39 22-76 15-53 (79)
5 PF05057 DUF676: Putative seri 66.9 4.3 9.3E-05 30.5 2.0 15 21-35 2-16 (217)
6 KOG2551|consensus 56.9 12 0.00026 29.5 2.9 35 26-62 8-42 (230)
7 KOG1455|consensus 53.8 32 0.00069 28.3 5.0 47 20-81 51-97 (313)
8 PRK13562 acetolactate synthase 46.8 36 0.00078 22.7 3.6 26 5-30 24-51 (84)
9 PF10137 TIR-like: Predicted n 35.7 63 0.0014 22.7 3.7 14 68-81 24-37 (125)
10 COG2840 Uncharacterized protei 35.3 34 0.00073 26.0 2.3 19 25-43 127-145 (184)
11 PF01713 Smr: Smr domain; Int 35.2 53 0.0011 20.6 3.0 15 24-38 28-42 (83)
12 PRK11152 ilvM acetolactate syn 35.2 47 0.001 21.5 2.7 25 6-30 26-52 (76)
13 PRK04946 hypothetical protein; 35.1 22 0.00047 26.8 1.3 11 24-34 125-135 (181)
14 COG2087 CobU Adenosyl cobinami 32.5 5.6 0.00012 30.1 -2.3 34 4-37 139-174 (175)
15 COG1219 ClpX ATP-dependent pro 32.1 28 0.00061 29.4 1.5 19 92-110 352-370 (408)
16 PF07521 RMMBL: RNA-metabolisi 31.4 27 0.00059 19.8 1.0 8 24-31 33-40 (43)
17 PF12697 Abhydrolase_6: Alpha/ 28.3 1.2E+02 0.0027 20.3 4.1 35 26-77 1-35 (228)
18 PF02230 Abhydrolase_2: Phosph 28.2 47 0.001 24.2 2.1 18 19-36 10-27 (216)
19 PF01674 Lipase_2: Lipase (cla 26.6 60 0.0013 24.9 2.5 67 25-104 3-70 (219)
20 PRK12418 cysteinyl-tRNA synthe 24.3 67 0.0015 26.8 2.5 46 33-86 259-306 (384)
21 PF11798 IMS_HHH: IMS family H 23.6 9.2 0.0002 20.7 -1.9 10 29-38 16-25 (32)
22 PF03944 Endotoxin_C: delta en 23.5 36 0.00078 24.0 0.7 8 66-73 136-143 (143)
23 PRK06737 acetolactate synthase 23.3 75 0.0016 20.6 2.1 27 5-31 24-52 (76)
24 PRK00409 recombination and DNA 22.2 83 0.0018 28.6 2.8 24 24-58 734-757 (782)
25 PRK11460 putative hydrolase; P 22.1 80 0.0017 23.6 2.4 17 21-37 14-30 (232)
26 PF00975 Thioesterase: Thioest 21.9 51 0.0011 23.6 1.2 10 26-35 3-12 (229)
27 PF10503 Esterase_phd: Esteras 21.5 61 0.0013 24.8 1.6 12 25-36 18-29 (220)
28 smart00463 SMR Small MutS-rela 21.2 70 0.0015 19.9 1.6 14 24-37 32-45 (80)
29 KOG2541|consensus 21.2 1.1E+02 0.0024 25.0 3.1 13 26-38 26-38 (296)
30 PF09600 Cyd_oper_YbgE: Cyd op 21.1 27 0.0006 23.1 -0.3 10 27-36 46-55 (82)
31 TIGR01738 bioH putative pimelo 20.4 68 0.0015 22.1 1.6 13 25-37 6-18 (245)
32 COG2088 SpoVG Uncharacterized 20.4 51 0.0011 22.5 0.9 29 26-54 28-74 (95)
No 1
>KOG2308|consensus
Probab=99.94 E-value=2e-27 Score=205.80 Aligned_cols=112 Identities=37% Similarity=0.599 Sum_probs=103.4
Q ss_pred CCceeccccCccCCCCCCCCCCCeEEEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccC---CCCceEEEeeeec--
Q psy18230 1 TGYRLARGYKDQALETDRPEDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFAS---SKLRAEFFPVEWR-- 75 (112)
Q Consensus 1 ~g~~l~RG~~~~~~~~d~~~~idHLVfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~---~~~rvefLPI~Wr-- 75 (112)
.|+.|+|+|.+++.+.+++.+++||||+||||||++..+++++|++.||....++.++|+.+ +..||+||||+||
T Consensus 270 ~~~~l~~~~~ee~~~~~k~~~v~hllf~vhgig~~~~~~~i~~n~~~~r~~~~~~~~sh~~~~~~r~v~v~fLpv~w~~~ 349 (741)
T KOG2308|consen 270 VGRGLRRFLEEENDLASKPVPVDHLLFVVHGIGQKMKDNSIIENVDSFRELPKALGESHLKNSSDRPVRVLFLPVEWRKG 349 (741)
T ss_pred cccccchhhhhhccccCCCccchheeeeeeccccCccccchhhcchhHHHHHHHHHHhhhccccCCccceeEEEeeeeEc
Confidence 37789999999999999999999999999999999999999999999999999999999987 4557999999999
Q ss_pred cccccCCCccccccccchHHHHHHHhhhhhhhccccC
Q psy18230 76 SSLALDGDIVESITQLNVLNLRHMLNASAMDIMYYTD 112 (112)
Q Consensus 76 ~~l~~d~~~l~~ITl~~i~~lR~~~nd~~lDvl~Y~S 112 (112)
+....+...+++||+++|+.+|.|+|+|+||||||||
T Consensus 350 ~~~~~~~~~v~~Itl~~i~~~R~~lnst~lDilyY~S 386 (741)
T KOG2308|consen 350 GEKTEDVNFVDDITLDSIPRKRIFLNSTALDILYYMS 386 (741)
T ss_pred cchhccccchhhcccccchhHHhhccchhhhhcccCC
Confidence 5555566789999999999999999999999999998
No 2
>KOG2308|consensus
Probab=91.33 E-value=0.017 Score=51.69 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=55.6
Q ss_pred CCCCCCeEEEEEeCC--CccCCchhHHHHhHHHHHHH-----HHH-HHhcccC-----CCCceEEEeeeeccccccCC--
Q psy18230 18 RPEDISHLVFVVHGM--GQKMDSGRIIKNATQFRESV-----MWL-KKKYFAS-----SKLRAEFFPVEWRSSLALDG-- 82 (112)
Q Consensus 18 ~~~~idHLVfvVHGI--Gq~~~~~~iv~~~~~~r~~~-----~~l-~~~~~~~-----~~~rvefLPI~Wr~~l~~d~-- 82 (112)
..+++++|+|+|||+ |...+..+++++++.++... ..- .+--|.. ......+.+.-||.-+.|.+
T Consensus 333 ~~r~v~v~fLpv~w~~~~~~~~~~~~v~~Itl~~i~~~R~~lnst~lDilyY~Splyrq~Iv~~V~~elNr~y~lf~~rn 412 (741)
T KOG2308|consen 333 SDRPVRVLFLPVEWRKGGEKTEDVNFVDDITLDSIPRKRIFLNSTALDILYYMSPLYRQEIVKGVARELNRLYALFKDRN 412 (741)
T ss_pred cCCccceeEEEeeeeEccchhccccchhhcccccchhHHhhccchhhhhcccCChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356899999999999 67666666666654333332 211 1100111 23344555555665555532
Q ss_pred -----------Ccc-ccccccchHHH--HHHHhhhhhhhcccc
Q psy18230 83 -----------DIV-ESITQLNVLNL--RHMLNASAMDIMYYT 111 (112)
Q Consensus 83 -----------~~l-~~ITl~~i~~l--R~~~nd~~lDvl~Y~ 111 (112)
.++ .-||.+.+... +.|+-|.++|+++|.
T Consensus 413 Pef~G~Vsi~gHSLGSvit~Dil~~q~~P~~l~D~~ld~~~~~ 455 (741)
T KOG2308|consen 413 PEFNGKVSIAGHSLGSVITYDILSHQRSPTFLLDELLDKLLYE 455 (741)
T ss_pred hhhcCceeeccCCCCceEEEeecccccCcchhHHHHHhhhhcc
Confidence 223 44566665555 679999999999884
No 3
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=72.88 E-value=3.2 Score=30.86 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=13.8
Q ss_pred EEEEeCCCccCCchhHHHHhHHHHHHHHH
Q psy18230 26 VFVVHGMGQKMDSGRIIKNATQFRESVMW 54 (112)
Q Consensus 26 VfvVHGIGq~~~~~~iv~~~~~~r~~~~~ 54 (112)
|||.||-||+-. -|-..+..+|+.+.+
T Consensus 7 iLcLHG~~~na~--if~~q~~~l~~~l~~ 33 (212)
T PF03959_consen 7 ILCLHGYGQNAE--IFRQQTSALRKALKK 33 (212)
T ss_dssp EEEE--TT--HH--HHHHHTHHHHHHHHH
T ss_pred EEEeCCCCcCHH--HHHHHHHHHHHHHhh
Confidence 899999999753 233344556655544
No 4
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=68.84 E-value=8.7 Score=24.61 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=26.1
Q ss_pred CCeEEEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccCCCCceEEEeeeecc
Q psy18230 22 ISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRS 76 (112)
Q Consensus 22 idHLVfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~~~~rvefLPI~Wr~ 76 (112)
+.-.|+++||.|.+.+ .+...++.|++ .+..+.-..+|-
T Consensus 15 ~k~~v~i~HG~~eh~~---------ry~~~a~~L~~-------~G~~V~~~D~rG 53 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSG---------RYAHLAEFLAE-------QGYAVFAYDHRG 53 (79)
T ss_pred CCEEEEEeCCcHHHHH---------HHHHHHHHHHh-------CCCEEEEECCCc
Confidence 8999999999986543 45666666664 335555555543
No 5
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=66.87 E-value=4.3 Score=30.46 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.0
Q ss_pred CCCeEEEEEeCCCcc
Q psy18230 21 DISHLVFVVHGMGQK 35 (112)
Q Consensus 21 ~idHLVfvVHGIGq~ 35 (112)
+-.|||.+|||++-.
T Consensus 2 ~~~hLvV~vHGL~G~ 16 (217)
T PF05057_consen 2 KPVHLVVFVHGLWGN 16 (217)
T ss_pred CCCEEEEEeCCCCCC
Confidence 458999999999866
No 6
>KOG2551|consensus
Probab=56.91 E-value=12 Score=29.48 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=27.2
Q ss_pred EEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccC
Q psy18230 26 VFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFAS 62 (112)
Q Consensus 26 VfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~ 62 (112)
|||.||-=|... .|-.....+|+.++++.+-+|++
T Consensus 8 vLcLHGfrQsg~--~F~~Ktg~~rK~l~k~~el~f~~ 42 (230)
T KOG2551|consen 8 VLCLHGFRQSGK--VFSEKTGSLRKLLKKLAELVFPD 42 (230)
T ss_pred EEEecchhhccH--HHHHHhhhHHHHHHhhheEEecC
Confidence 899999988764 45566688999999887766654
No 7
>KOG1455|consensus
Probab=53.81 E-value=32 Score=28.28 Aligned_cols=47 Identities=19% Similarity=0.380 Sum_probs=34.6
Q ss_pred CCCCeEEEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccCCCCceEEEeeeeccccccC
Q psy18230 20 EDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALD 81 (112)
Q Consensus 20 ~~idHLVfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~~~~rvefLPI~Wr~~l~~d 81 (112)
.++.-|||++||-|..++ ..|.+.+..+++ .+..+-.+.|+-.=..|
T Consensus 51 ~~pr~lv~~~HG~g~~~s--------~~~~~~a~~l~~-------~g~~v~a~D~~GhG~Sd 97 (313)
T KOG1455|consen 51 TEPRGLVFLCHGYGEHSS--------WRYQSTAKRLAK-------SGFAVYAIDYEGHGRSD 97 (313)
T ss_pred CCCceEEEEEcCCcccch--------hhHHHHHHHHHh-------CCCeEEEeeccCCCcCC
Confidence 488999999999998664 457777777775 44677788887654443
No 8
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=46.76 E-value=36 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.8
Q ss_pred eccccCccC--CCCCCCCCCCeEEEEEe
Q psy18230 5 LARGYKDQA--LETDRPEDISHLVFVVH 30 (112)
Q Consensus 5 l~RG~~~~~--~~~d~~~~idHLVfvVH 30 (112)
-+|||.-.. ..+.+.+.|..+.+|++
T Consensus 24 sRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 24 VRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred hccCcCeeeEEecccCCCCceEEEEEEe
Confidence 479999765 56778899999999998
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=35.72 E-value=63 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.525 Sum_probs=10.0
Q ss_pred EEEeeeeccccccC
Q psy18230 68 EFFPVEWRSSLALD 81 (112)
Q Consensus 68 efLPI~Wr~~l~~d 81 (112)
.+=|+.|+......
T Consensus 24 ~~ep~i~~~~~~~g 37 (125)
T PF10137_consen 24 GLEPIIWHEQPNLG 37 (125)
T ss_pred CCceEEeecCCCCC
Confidence 35689999888543
No 10
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.29 E-value=34 Score=25.99 Aligned_cols=19 Identities=37% Similarity=0.663 Sum_probs=13.4
Q ss_pred EEEEEeCCCccCCchhHHH
Q psy18230 25 LVFVVHGMGQKMDSGRIIK 43 (112)
Q Consensus 25 LVfvVHGIGq~~~~~~iv~ 43 (112)
=|+||||-|-..+...+++
T Consensus 127 cv~VihGkG~s~g~~~vLK 145 (184)
T COG2840 127 CVLVIHGKGRSKGSKPVLK 145 (184)
T ss_pred EEEEEeCCCcCCCCchhHH
Confidence 3789999998555445444
No 11
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=35.23 E-value=53 Score=20.64 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=9.0
Q ss_pred eEEEEEeCCCccCCc
Q psy18230 24 HLVFVVHGMGQKMDS 38 (112)
Q Consensus 24 HLVfvVHGIGq~~~~ 38 (112)
.-+.||||.|.+-..
T Consensus 28 ~~~~II~G~G~hS~~ 42 (83)
T PF01713_consen 28 RELRIITGKGNHSKG 42 (83)
T ss_dssp SEEEEE--STCTCCT
T ss_pred CEEEEEeccCCCCCC
Confidence 346799999966544
No 12
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=35.22 E-value=47 Score=21.46 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=19.3
Q ss_pred ccccCccC--CCCCCCCCCCeEEEEEe
Q psy18230 6 ARGYKDQA--LETDRPEDISHLVFVVH 30 (112)
Q Consensus 6 ~RG~~~~~--~~~d~~~~idHLVfvVH 30 (112)
+|||.-.+ ..+.+.+.+.++.++|.
T Consensus 26 rRGfnI~sl~v~~t~~~~~sriti~v~ 52 (76)
T PRK11152 26 HRGFQVCSMNMTQNTDAQNINIELTVA 52 (76)
T ss_pred cCCeeeeeEEeeecCCCCEEEEEEEEC
Confidence 69998665 34555788999999994
No 13
>PRK04946 hypothetical protein; Provisional
Probab=35.06 E-value=22 Score=26.77 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=9.1
Q ss_pred eEEEEEeCCCc
Q psy18230 24 HLVFVVHGMGQ 34 (112)
Q Consensus 24 HLVfvVHGIGq 34 (112)
.-|+||||.|.
T Consensus 125 r~v~IIHGkG~ 135 (181)
T PRK04946 125 FCACVMHGHGK 135 (181)
T ss_pred CEEEEEcCCCH
Confidence 35799999995
No 14
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=32.50 E-value=5.6 Score=30.08 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=19.0
Q ss_pred eeccccCccCC--CCCCCCCCCeEEEEEeCCCccCC
Q psy18230 4 RLARGYKDQAL--ETDRPEDISHLVFVVHGMGQKMD 37 (112)
Q Consensus 4 ~l~RG~~~~~~--~~d~~~~idHLVfvVHGIGq~~~ 37 (112)
++.|=|.|.+- ...-....|...|||+||..++.
T Consensus 139 ~l~R~fRD~~G~lnQ~la~~~deV~lvvaGlplklK 174 (175)
T COG2087 139 RLGRLFRDIAGRLNQQLAALADEVYLVVAGLPLKLK 174 (175)
T ss_pred hhhHHHHHHHhHHHHHHHHhcCeEEEEEcCcccccC
Confidence 34444554431 22224556777888888877653
No 15
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.06 E-value=28 Score=29.37 Aligned_cols=19 Identities=21% Similarity=0.482 Sum_probs=17.0
Q ss_pred chHHHHHHHhhhhhhhccc
Q psy18230 92 NVLNLRHMLNASAMDIMYY 110 (112)
Q Consensus 92 ~i~~lR~~~nd~~lDvl~Y 110 (112)
+.+.||.++-+.++|+||=
T Consensus 352 GARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 352 GARGLRSIIEELLLDVMFE 370 (408)
T ss_pred chhHHHHHHHHHHHHHHhh
Confidence 5699999999999999983
No 16
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=31.35 E-value=27 Score=19.84 Aligned_cols=8 Identities=50% Similarity=0.862 Sum_probs=6.4
Q ss_pred eEEEEEeC
Q psy18230 24 HLVFVVHG 31 (112)
Q Consensus 24 HLVfvVHG 31 (112)
.-+|+|||
T Consensus 33 ~~vilVHG 40 (43)
T PF07521_consen 33 RKVILVHG 40 (43)
T ss_dssp SEEEEESS
T ss_pred CEEEEecC
Confidence 56788998
No 17
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=28.28 E-value=1.2e+02 Score=20.30 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=21.9
Q ss_pred EEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccCCCCceEEEeeeeccc
Q psy18230 26 VFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSS 77 (112)
Q Consensus 26 VfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~~~~rvefLPI~Wr~~ 77 (112)
|+++||.|..... |+...+.+. .+..++-++++..
T Consensus 1 vv~~hG~~~~~~~---------~~~~~~~l~--------~~~~v~~~d~~G~ 35 (228)
T PF12697_consen 1 VVFLHGFGGSSES---------WDPLAEALA--------RGYRVIAFDLPGH 35 (228)
T ss_dssp EEEE-STTTTGGG---------GHHHHHHHH--------TTSEEEEEECTTS
T ss_pred eEEECCCCCCHHH---------HHHHHHHHh--------CCCEEEEEecCCc
Confidence 6899999987632 333444443 2356888888863
No 18
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=28.25 E-value=47 Score=24.24 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=11.8
Q ss_pred CCCCCeEEEEEeCCCccC
Q psy18230 19 PEDISHLVFVVHGMGQKM 36 (112)
Q Consensus 19 ~~~idHLVfvVHGIGq~~ 36 (112)
..+-..||++.||-|+..
T Consensus 10 ~~~~~~lvi~LHG~G~~~ 27 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE 27 (216)
T ss_dssp SST-SEEEEEE--TTS-H
T ss_pred CCCCceEEEEECCCCCCc
Confidence 456778999999999976
No 19
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=26.60 E-value=60 Score=24.87 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=30.4
Q ss_pred EEEEEeCCCccCCchhHHHHhHHHHHHHHHHHHhcccCCCCceEEEeeeeccccccCC-CccccccccchHHHHHHHhhh
Q psy18230 25 LVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDG-DIVESITQLNVLNLRHMLNAS 103 (112)
Q Consensus 25 LVfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~~~~~~~~rvefLPI~Wr~~l~~d~-~~l~~ITl~~i~~lR~~~nd~ 103 (112)
-|..|||.+...... +......+++.-+ +.-|+....|-+.-.... .... -+-+++..||.|+..|
T Consensus 3 PVVlVHG~~~~~~~~--------w~~~~~~l~~~GY----~~~~vya~tyg~~~~~~~~~~~~-~~~~~~~~l~~fI~~V 69 (219)
T PF01674_consen 3 PVVLVHGTGGNAYSN--------WSTLAPYLKAAGY----CDSEVYALTYGSGNGSPSVQNAH-MSCESAKQLRAFIDAV 69 (219)
T ss_dssp -EEEE--TTTTTCGG--------CCHHHHHHHHTT------CCCEEEE--S-CCHHTHHHHHH-B-HHHHHHHHHHHHHH
T ss_pred CEEEECCCCcchhhC--------HHHHHHHHHHcCC----CcceeEeccCCCCCCCCcccccc-cchhhHHHHHHHHHHH
Confidence 488999999643321 2222233443322 334566777755443221 0111 2235678999999887
Q ss_pred h
Q psy18230 104 A 104 (112)
Q Consensus 104 ~ 104 (112)
+
T Consensus 70 l 70 (219)
T PF01674_consen 70 L 70 (219)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=24.34 E-value=67 Score=26.82 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=29.0
Q ss_pred CccCCch--hHHHHhHHHHHHHHHHHHhcccCCCCceEEEeeeeccccccCCCccc
Q psy18230 33 GQKMDSG--RIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDGDIVE 86 (112)
Q Consensus 33 Gq~~~~~--~iv~~~~~~r~~~~~l~~~~~~~~~~rvefLPI~Wr~~l~~d~~~l~ 86 (112)
|++|++. |++.-. ++.+..+....-|.-+|..+||+.+.|..+.++
T Consensus 259 G~KMSKSlGN~i~~~--------ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~ 306 (384)
T PRK12418 259 GEKMSKSRGNLVFVS--------RLRAAGVDPAAIRLALLAGHYRADREWTDAVLA 306 (384)
T ss_pred CCcccCcCCCcCCHH--------HHHhccCChhheeEEEeccCCCCCcccCHHHHH
Confidence 8888764 554321 122221222357899999999999999866443
No 21
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=23.59 E-value=9.2 Score=20.68 Aligned_cols=10 Identities=30% Similarity=0.631 Sum_probs=6.3
Q ss_pred EeCCCccCCc
Q psy18230 29 VHGMGQKMDS 38 (112)
Q Consensus 29 VHGIGq~~~~ 38 (112)
++|||.+..+
T Consensus 16 ~~GIG~kt~~ 25 (32)
T PF11798_consen 16 FWGIGKKTAK 25 (32)
T ss_dssp STTS-HHHHH
T ss_pred hCCccHHHHH
Confidence 5899987653
No 22
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=23.52 E-value=36 Score=23.99 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=6.4
Q ss_pred ceEEEeee
Q psy18230 66 RAEFFPVE 73 (112)
Q Consensus 66 rvefLPI~ 73 (112)
|+||+||+
T Consensus 136 kIEFIPv~ 143 (143)
T PF03944_consen 136 KIEFIPVN 143 (143)
T ss_dssp EEEEEECT
T ss_pred eEEEEeCC
Confidence 78899874
No 23
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=23.29 E-value=75 Score=20.58 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.5
Q ss_pred eccccCccC--CCCCCCCCCCeEEEEEeC
Q psy18230 5 LARGYKDQA--LETDRPEDISHLVFVVHG 31 (112)
Q Consensus 5 l~RG~~~~~--~~~d~~~~idHLVfvVHG 31 (112)
=+|||.-.+ ..+.+.+.+..+.+++.|
T Consensus 24 ~rRgfNI~Sl~vg~te~~~~sriti~~~~ 52 (76)
T PRK06737 24 ARRGYYISSLNLNERDTSGVSEMKLTAVC 52 (76)
T ss_pred hccCcceEEEEecccCCCCeeEEEEEEEC
Confidence 379999665 456678899999999986
No 24
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.18 E-value=83 Score=28.60 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=17.5
Q ss_pred eEEEEEeCCCccCCchhHHHHhHHHHHHHHHHHHh
Q psy18230 24 HLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKK 58 (112)
Q Consensus 24 HLVfvVHGIGq~~~~~~iv~~~~~~r~~~~~l~~~ 58 (112)
.-|.+|||.|. ..+|+.+.+..++
T Consensus 734 ~~v~IIHGkGt-----------G~Lr~~v~~~L~~ 757 (782)
T PRK00409 734 GEVLIIHGKGT-----------GKLRKGVQEFLKK 757 (782)
T ss_pred CEEEEEcCCCh-----------hHHHHHHHHHHcC
Confidence 35889999995 4688888765553
No 25
>PRK11460 putative hydrolase; Provisional
Probab=22.12 E-value=80 Score=23.60 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.5
Q ss_pred CCCeEEEEEeCCCccCC
Q psy18230 21 DISHLVFVVHGMGQKMD 37 (112)
Q Consensus 21 ~idHLVfvVHGIGq~~~ 37 (112)
+-..+|++.||-|....
T Consensus 14 ~~~~~vIlLHG~G~~~~ 30 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPV 30 (232)
T ss_pred CCCcEEEEEeCCCCChH
Confidence 34579999999998754
No 26
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=21.92 E-value=51 Score=23.64 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=8.0
Q ss_pred EEEEeCCCcc
Q psy18230 26 VFVVHGMGQK 35 (112)
Q Consensus 26 VfvVHGIGq~ 35 (112)
|||+||+|-.
T Consensus 3 lf~~p~~gG~ 12 (229)
T PF00975_consen 3 LFCFPPAGGS 12 (229)
T ss_dssp EEEESSTTCS
T ss_pred EEEEcCCccC
Confidence 7899998863
No 27
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=21.49 E-value=61 Score=24.84 Aligned_cols=12 Identities=58% Similarity=0.919 Sum_probs=11.1
Q ss_pred EEEEEeCCCccC
Q psy18230 25 LVFVVHGMGQKM 36 (112)
Q Consensus 25 LVfvVHGIGq~~ 36 (112)
||++.||-||.-
T Consensus 18 LVv~LHG~~~~a 29 (220)
T PF10503_consen 18 LVVVLHGCGQSA 29 (220)
T ss_pred EEEEeCCCCCCH
Confidence 999999999975
No 28
>smart00463 SMR Small MutS-related domain.
Probab=21.20 E-value=70 Score=19.90 Aligned_cols=14 Identities=14% Similarity=0.368 Sum_probs=11.6
Q ss_pred eEEEEEeCCCccCC
Q psy18230 24 HLVFVVHGMGQKMD 37 (112)
Q Consensus 24 HLVfvVHGIGq~~~ 37 (112)
..+.||||-|..-.
T Consensus 32 ~~~~II~G~G~~s~ 45 (80)
T smart00463 32 QKLVIITGKGKHSL 45 (80)
T ss_pred ceEEEEEcccCCCc
Confidence 67999999997643
No 29
>KOG2541|consensus
Probab=21.19 E-value=1.1e+02 Score=24.97 Aligned_cols=13 Identities=46% Similarity=0.761 Sum_probs=11.3
Q ss_pred EEEEeCCCccCCc
Q psy18230 26 VFVVHGMGQKMDS 38 (112)
Q Consensus 26 VfvVHGIGq~~~~ 38 (112)
+.+.||||-.|..
T Consensus 26 ~ii~HGigd~c~~ 38 (296)
T KOG2541|consen 26 VIVWHGIGDSCSS 38 (296)
T ss_pred EEEEeccCccccc
Confidence 6789999999875
No 30
>PF09600 Cyd_oper_YbgE: Cyd operon protein YbgE (Cyd_oper_YbgE); InterPro: IPR011846 This entry describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria [].
Probab=21.08 E-value=27 Score=23.10 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=7.3
Q ss_pred EEEeCCCccC
Q psy18230 27 FVVHGMGQKM 36 (112)
Q Consensus 27 fvVHGIGq~~ 36 (112)
.+|||+|=+-
T Consensus 46 ~~IhGvGF~P 55 (82)
T PF09600_consen 46 GWIHGVGFRP 55 (82)
T ss_pred HHhhccccch
Confidence 3689999654
No 31
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=20.39 E-value=68 Score=22.14 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=10.6
Q ss_pred EEEEEeCCCccCC
Q psy18230 25 LVFVVHGMGQKMD 37 (112)
Q Consensus 25 LVfvVHGIGq~~~ 37 (112)
.|+++||.|....
T Consensus 6 ~iv~~HG~~~~~~ 18 (245)
T TIGR01738 6 HLVLIHGWGMNAE 18 (245)
T ss_pred eEEEEcCCCCchh
Confidence 5899999988754
No 32
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.39 E-value=51 Score=22.50 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=17.7
Q ss_pred EEEEeCC----CccC-------------CchhHHH-HhHHHHHHHHH
Q psy18230 26 VFVVHGM----GQKM-------------DSGRIIK-NATQFRESVMW 54 (112)
Q Consensus 26 VfvVHGI----Gq~~-------------~~~~iv~-~~~~~r~~~~~ 54 (112)
.|||||| |++. +.+.|++ .+..+|+..+.
T Consensus 28 efVvhdirVi~G~~GlfVAMPSrrt~dgEFrDI~HPI~~~~R~kIq~ 74 (95)
T COG2088 28 EFVVHDIRVIEGNNGLFVAMPSRRTPDGEFRDIAHPINSDTREKIQD 74 (95)
T ss_pred eEEEeccEEEeCCcceEEEccCccCCCcchhhccCcCCHHHHHHHHH
Confidence 5999999 5541 1124555 34777777654
Done!