RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy18230
         (112 letters)



>gnl|CDD|214876 smart00873, B3_4, B3/4 domain.  This domain is found in tRNA
          synthetase beta subunits as well as in some non tRNA
          synthetase proteins.
          Length = 174

 Score = 28.4 bits (64), Expect = 0.62
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 39 GRIIKNATQFRESVMWLKKK 58
          GR+I+     R S  WL+++
Sbjct: 6  GRVIRGVKNTRPSPEWLQER 25


>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
          Length = 488

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 20 EDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSS 77
            +  L  V+   G   D  R+   A   R SV WL   +FA +++ A + P+ WR S
Sbjct: 30 ALVGRLAAVLRRRGCV-DGERL---AVLARNSV-WLVALHFACARVGAIYVPLNWRLS 82


>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
          Length = 399

 Score = 25.5 bits (56), Expect = 7.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 69  FFPVEWRSSLALDGDIVESITQLNVLNLRH-MLNASA 104
           +F +  R  + L G  VE   Q+ V N RH +LN +A
Sbjct: 146 YFALLARRRMDLYGATVEDFAQVKVKNARHGLLNPNA 182


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,688,218
Number of extensions: 463424
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 14
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)