RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy18230
         (112 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 21/94 (22%)

Query: 12  QALETDRPEDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLKKKYFASSKLRAEF-F 70
           QAL   RP        ++ G+     SG   K          W+      S K++ +  F
Sbjct: 142 QALLELRPAKN----VLIDGVL---GSG---KT---------WVALDVCLSYKVQCKMDF 182

Query: 71  PVEWRSSLALDGDIVESITQLNVLNLRHMLNASA 104
            + W  +L         +  L  L  +   N ++
Sbjct: 183 KIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTS 215


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.5 bits (65), Expect = 0.17
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 11/39 (28%)

Query: 49 RESVMWLKKKYFASSKLRA-EFFPVEWRSSLALDGDIVE 86
          ++++    KK  AS KL A +  P     +LA+   + E
Sbjct: 19 KQAL----KKLQASLKLYADDSAP-----ALAIKATM-E 47


>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris}
          Length = 156

 Score = 24.8 bits (54), Expect = 7.0
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 16  TDRPEDISHLVFVVHGMGQKMDSGRIIKNATQFRESVMWLK 56
             + ED + LVF+V     K      IK A +    +   K
Sbjct: 87  MKKIEDNNTLVFIVDVKANKHQ----IKQAVKKLYDIDVAK 123


>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
           structural genomics, midwest center for STR genomics;
           2.30A {Vibrio parahaemolyticus}
          Length = 452

 Score = 24.9 bits (55), Expect = 7.6
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 28  VVHGMGQKMDSGRIIKNA 45
            +   G KM + RI+ N 
Sbjct: 382 RIRYFGDKMKTARILINI 399


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.0 bits (54), Expect = 8.6
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 9/38 (23%)

Query: 59 YFASSKLRAEFF-----PVEWRSSLALDGDIVESITQL 91
          +F +S+L+ +F      P E     A D D   +  +L
Sbjct: 27 FFIASQLQEQFNKILPEPTE---GFAAD-DEPTTPAEL 60


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0840    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,441
Number of extensions: 85641
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)