RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18230
         (112 letters)



>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
           {Alcaligenes faecalis [TaxId: 511]}
          Length = 679

 Score = 24.7 bits (52), Expect = 3.2
 Identities = 4/10 (40%), Positives = 5/10 (50%)

Query: 66  RAEFFPVEWR 75
           +A F P  W 
Sbjct: 669 KAHFKPAPWN 678


>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3
          (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 24.0 bits (51), Expect = 4.6
 Identities = 9/52 (17%), Positives = 23/52 (44%)

Query: 42 IKNATQFRESVMWLKKKYFASSKLRAEFFPVEWRSSLALDGDIVESITQLNV 93
          I++  + ++  +  K     S      +F  +  + + L+GD +   T L++
Sbjct: 9  IRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSL 60


>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 83

 Score = 23.0 bits (49), Expect = 6.2
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 11 DQALETDRPEDISHLVFVVHGMGQKMDSGR-IIKNATQFRESVMWLKKKYFA 61
          ++  E  +       + V+ G G     G   IK A        +L    F 
Sbjct: 23 EKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVI-----KYLISHSFR 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0539    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,364
Number of extensions: 16130
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 5
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)