BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18231
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 134 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 178
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 179 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 210
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 271 NLQTKEIVQKLQGH 284
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 112
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 113 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 151
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 272 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 134 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 178
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 179 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 210
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 271 NLQTKEIVQKLQGH 284
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 112
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 113 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 151
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 272 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 134 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 178
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 179 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 210
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 211 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 271 NLQTKEIVQKLQGH 284
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 77
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 112
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 113 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 151
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 211
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 212 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 271
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 272 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 265 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 124 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 168
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 169 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 200
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 201 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 261 NLQTKEIVQKLQGH 274
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 67
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 102
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 103 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 141
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 201
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 202 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 261
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 262 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 307
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 255 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 84
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 145 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 189
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 190 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 221
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 222 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 282 NLQTKEIVQKLQGH 295
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 88
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 123
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 124 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 162
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 222
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 223 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 282
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 283 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 328
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 276 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 68
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 129 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 173
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 174 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 205
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 206 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 266 NLQTKEIVQKLQGH 279
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 72
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 107
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 108 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 146
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 206
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 207 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 266
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 267 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 312
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 260 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 72
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 133 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 177
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 178 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 209
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 210 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 270 NLQTKEIVQKLQGH 283
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 76
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 111
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 112 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 150
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 210
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 211 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 270
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 271 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 316
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 264 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 66
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 127 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 171
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 172 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 203
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 204 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 264 NLQTKEIVQKLQGH 277
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 70
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 105
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 106 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 144
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 204
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 205 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 264
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 265 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 310
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 258 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 91
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 152 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 196
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 197 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 228
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 229 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 289 NLQTKEIVQKLQGH 302
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 95
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 130
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 131 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVK----TGKCLKTL 169
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 229
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 230 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 289
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 290 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 335
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 283 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 150 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 194
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 195 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 226
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 227 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 287 NLQTKEIVQKLQGH 300
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 93
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 128
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 129 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVK----TGKCLKTL 167
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 227
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 228 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 287
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 288 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 333
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 281 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 128 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 172
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 173 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 204
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 265 NLQTKEIVQKLQGH 278
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 106
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 107 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 145
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 266 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 140/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ +CL + L D +++VH + L+ +
Sbjct: 128 DESVRIWDVKTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 172
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 173 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 204
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 205 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 265 NLQTKEIVQKLQGH 278
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 71
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 106
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 107 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 145
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 206 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 265
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 266 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 259 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ CL + L D +++VH + L+ +
Sbjct: 131 DESVRIWDVKTG-------MCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 175
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 176 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 207
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 208 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 268 NLQTKEIVQKLQGH 281
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 57/345 (16%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
L+ T GH V+ + + +AS ++DK + +W G+ + H ++ V ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
DS++++S S D T+ +WDV S +CL K+ K H SN
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH-SN 111
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
+ F C + +L+V F S +I DV C + L
Sbjct: 112 -------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GMCLKTLPAH 151
Query: 378 RDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQCIL 432
D +++VH + I+++S D R +D +G + + + P+ F+ + + IL
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVD 491
+ D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L
Sbjct: 212 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-Q 270
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
+ +I + V+++ C HPT I SA N +KLW ++
Sbjct: 271 TKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 52/305 (17%)
Query: 162 FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 217
F L+G + +F +G + + +DK IK+W Y KT GH ++D + D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
S+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V +WDV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337
K+ +CL + L D +++VH + L+ + C+ +
Sbjct: 140 KTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGLCRIWD---- 180
Query: 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD 397
S Q L L+D D P+ S + IL A+LD
Sbjct: 181 --TASGQCLKTLID-------DDNPPV---------------SFVKFSPNGKYILAATLD 216
Query: 398 CRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLFDKATGELLE 452
++ +D G + Y G C + + I++ S D + +++ T E+++
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 453 EYKGH 457
+ +GH
Sbjct: 277 KLQGH 281
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 55/340 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 109
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 110 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 148
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 528
L + +I + V+++ C HPT I SA N K
Sbjct: 269 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDK 306
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270
V +W + T + V++ + H V + +++ S + +N
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 52/305 (17%)
Query: 162 FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 217
F L+G + +F +G + + +DK IK+W Y KT GH ++D + D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
S+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V +WDV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337
K+ +CL + L D +++VH + L+ + C+ +
Sbjct: 140 KTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGLCRIWD---- 180
Query: 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD 397
S Q L L+D D P+ S + IL A+LD
Sbjct: 181 --TASGQCLKTLID-------DDNPPV---------------SFVKFSPNGKYILAATLD 216
Query: 398 CRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLFDKATGELLE 452
++ +D G + Y G C + + I++ S D + +++ T E+++
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 453 EYKGH 457
+ +GH
Sbjct: 277 KLQGH 281
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 55/340 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +AS ++DK + +W G+ + H ++ V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 109
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 110 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 148
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 528
L + +I + V+++ C HPT I SA N K
Sbjct: 269 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDK 306
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 270
V +W + T + V++ + H V + +++ S + +N
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 53/314 (16%)
Query: 154 PLTVNREL-FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE 208
P+ N L F L+G + +F +G + + +DK IK+W Y KT GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 209 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 268
++D + DS+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 269 DNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFR 328
D +V +WDVK+ CL + L D +++VH + L+ +
Sbjct: 131 DESVRIWDVKTG-------MCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGL 175
Query: 329 CKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSD 388
C+ + S Q L L+D D P+ S +
Sbjct: 176 CRIWD------TASGQCLKTLID-------DDNPPV---------------SFVKFSPNG 207
Query: 389 HEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLF 443
IL A+LD ++ +D G + Y G C + + I++ S D + ++
Sbjct: 208 KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 444 DKATGELLEEYKGH 457
+ T E++++ +GH
Sbjct: 268 NLQTKEIVQKLQGH 281
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 57/345 (16%)
Query: 198 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 257
L+ T GH V+ + + +AS ++DK + +W G+ + H ++ V ++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 258 EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSN 317
DS++++S S D T+ +WDV S +CL K+ K H SN
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH-SN 111
Query: 318 GLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEA 377
+ F C + +L+V F S +I DV C + L
Sbjct: 112 -------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GMCLKTLPAH 151
Query: 378 RDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQCIL 432
D +++VH + I+++S D R +D +G + + + P+ F+ + + IL
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVD 491
+ D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L
Sbjct: 212 AATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-Q 270
Query: 492 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
+ +I + V+++ C HPT I SA N +KLW ++
Sbjct: 271 TKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 262 NMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 135/305 (44%), Gaps = 52/305 (17%)
Query: 162 FVLSG----LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 217
F L+G + +F +G + +DK IK+W Y KT GH ++D + D
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 218 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
S+ + S + DK++ +W+V++G+ ++ + H++ V C FN S++++SGS D +V +WDV
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 278 KSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLS 337
K+ +CL + L D +++VH + L+ + C+ +
Sbjct: 140 KTG-------KCL-KTLPAHSDPVSAVHF-------NRDGSLIVSSSYDGLCRIWD---- 180
Query: 338 GVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLD 397
S Q L L+D D P+ S + IL A+LD
Sbjct: 181 --TASGQCLKTLID-------DDNPPV---------------SFVKFSPNGKYILAATLD 216
Query: 398 CRIRRYDIRTGNLVTDYVGEPIVDACFTRD-----CQCILTCSTDECLRLFDKATGELLE 452
++ +D G + Y G C + + I++ S D + +++ T E+++
Sbjct: 217 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Query: 453 EYKGH 457
+ +GH
Sbjct: 277 KLQGH 281
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 150/348 (43%), Gaps = 58/348 (16%)
Query: 196 NLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
N LK T GH V+ + + +A+ ++DK + +W G+ + H ++ V
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 255 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNH 314
++ DS++++S S D T+ +WDV S +CL K+ K H
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-------KCL------------------KTLKGH 109
Query: 315 LSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQAL 374
SN + F C + +L+V F S +I DV C + L
Sbjct: 110 -SN-------YVFCCNF---------NPQSNLIVSGSFDESVRIWDVKT----GKCLKTL 148
Query: 375 KEARDSITSVHVSDHE--ILTASLDCRIRRYDIRTGNLVTDYVGE---PIVDACFTRDCQ 429
D +++VH + I+++S D R +D +G + + + P+ F+ + +
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 208
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
IL + D L+L+D + G+ L+ Y GHK+ + I + I GS D +Y W
Sbjct: 209 YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWN 268
Query: 489 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 533
L + +I + V+++ C HPT I SA N +KLW ++
Sbjct: 269 L-QTKEIVQKLQGHTDVVISTAC-HPTENIIASAALENDKTIKLWKSD 314
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE---VNDATAACDSSQIASGASD 227
+F +G Y L D +KLW+ + LKTY GH +E + + I SG+ D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS--QDNTVMMW 275
V +W + T + V++ + H V + +++ S + D T+ +W
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN LL+T GH+ V + D IAS + DK+V
Sbjct: 147 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPI 285
LW GQ ++ H+S V V F+ D + S S D TV +W+ +++ + H
Sbjct: 205 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 263
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
V + A + +I S S K+ K NG L + + GV S
Sbjct: 264 SVNGV--AFRPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVW-----GVAFSPDG 315
Query: 346 LMVLLDFLGSTQIGDVTPISIHN---SCFQALKEARDSITSVHVS--DHEILTASLDCRI 400
+ D + + N Q L S+ V S I +AS D +
Sbjct: 316 QTI-------ASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 401 RRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458
+ ++ R G L+ G + F+ D Q I + S D+ ++L+++ G+LL+ GH
Sbjct: 369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 426
Query: 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRK 517
S + + S D Q +SD K K + + TL HS + V + P +
Sbjct: 427 SSVWGVAF---SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQ 480
Query: 518 HIMSACGN-NVKLW 530
I SA + VKLW
Sbjct: 481 TIASASDDKTVKLW 494
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 154/374 (41%), Gaps = 41/374 (10%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN LL+T GH+ V + D IAS + DK+V
Sbjct: 24 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 81
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPI 285
LW GQ ++ H+S V V F+ D + S S D TV +W+ +++ + H
Sbjct: 82 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 140
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
V + A +I S S K+ K NG L + + GV S
Sbjct: 141 SVWGV--AFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSSVW-----GVAFSPDG 192
Query: 346 LMVLLDFLGSTQIGDVTPISIHN---SCFQALKEARDSITSVHVS--DHEILTASLDCRI 400
+ D + + N Q L S+ V S I +AS D +
Sbjct: 193 QTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 401 RRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458
+ ++ R G L+ G + F D Q I + S D+ ++L+++ G+LL+ GH
Sbjct: 246 KLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 303
Query: 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRK 517
S + + S D Q +SD K K + + TL HS + V + P +
Sbjct: 304 SSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS---SSVWGVAFSPDGQ 357
Query: 518 HIMSACGN-NVKLW 530
I SA + VKLW
Sbjct: 358 TIASASDDKTVKLW 371
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 152/374 (40%), Gaps = 41/374 (10%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN LL+T GH+ V + D IAS + DK+V
Sbjct: 188 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPI 285
LW GQ ++ H+S V V F D + S S D TV +W+ +++ + H
Sbjct: 246 KLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 304
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
V + A +I S S K+ K NG + + GV S
Sbjct: 305 SVWGV--AFSPDGQTIASA-SDDKTVKLWNRNGQHLQTLTGHSSSVW-----GVAFSPDG 356
Query: 346 LMVLLDFLGSTQIGDVTPISIHN---SCFQALKEARDSITSVHVS--DHEILTASLDCRI 400
+ D + + N Q L S+ V S I +AS D +
Sbjct: 357 QTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 401 RRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458
+ ++ R G L+ G + F+ D Q I + S D+ ++L+++ G+LL+ GH
Sbjct: 410 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHS 467
Query: 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRK 517
S + S D Q +SD K K + + TL HS + V + P +
Sbjct: 468 S---SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQ 521
Query: 518 HIMSACGN-NVKLW 530
I SA + VKLW
Sbjct: 522 TIASASDDKTVKLW 535
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 156/374 (41%), Gaps = 41/374 (10%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN LL+T GH+ V + D IAS + DK+V
Sbjct: 65 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPI 285
LW GQ ++ H+S V V F+ D + S S D TV +W+ +++ + H
Sbjct: 123 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
V + A +I S S K+ K NG L + + + GV S
Sbjct: 182 SVWGV--AFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDG 233
Query: 346 LMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH-----VSDHEILTASLDCRI 400
+ D + + N Q L+ +SV+ I +AS D +
Sbjct: 234 QTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 401 RRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458
+ ++ R G L+ G + F+ D Q I + S D+ ++L+++ G+ L+ GH
Sbjct: 287 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHS 344
Query: 459 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRK 517
S + + S D Q +SD K K + + TL HS + V + P +
Sbjct: 345 SSVWGVAF---SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQ 398
Query: 518 HIMSACGN-NVKLW 530
I SA + VKLW
Sbjct: 399 TIASASDDKTVKLW 412
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN LL+T GH+ V + D IAS + DK+V
Sbjct: 475 FSPDGQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
LW GQ ++ H+S V V F+ D + S S D TV +W+
Sbjct: 533 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 118/286 (41%), Gaps = 32/286 (11%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLL-LKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
F DG + DK +KLWN RN L+T GH+ V + D IAS + DK+V
Sbjct: 311 FSPDGQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 231 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPI 285
LW GQ ++ H+S V V F+ D + S S D TV +W+ +++ + H
Sbjct: 369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 286 QVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQH 345
V + A +I S S K+ K NG L + + + GV S
Sbjct: 428 SVWGV--AFSPDDQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDG 479
Query: 346 LMVLLDFLGSTQIGDVTPISIHN---SCFQALKEARDSITSVHVS--DHEILTASLDCRI 400
+ D + + N Q L S+ V S I +AS D +
Sbjct: 480 QTI-------ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 401 RRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLFD 444
+ ++ R G L+ G + F+ D Q I + S+D+ ++L++
Sbjct: 533 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/340 (25%), Positives = 136/340 (40%), Gaps = 38/340 (11%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264
H+ V + D IAS + DK+V LW GQ ++ H+S V V F+ D +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 265 SGSQDNTVMMWD-----VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGL 319
S S D TV +W+ +++ + H VR + A +I S S K+ K NG
Sbjct: 74 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGV--AFSPDGQTIASA-SDDKTVKLWNRNGQ 130
Query: 320 LTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHN---SCFQALKE 376
L + + GV S + D + + N Q L
Sbjct: 131 LLQTLTGHSSSVW-----GVAFSPDGQTI-------ASASDDKTVKLWNRNGQLLQTLTG 178
Query: 377 ARDSITSVHVS--DHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCIL 432
S+ V S I +AS D ++ ++ R G L+ G + F+ D Q I
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 433 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 492
+ S D+ ++L+++ G+LL+ GH S + D Q +SD K K +
Sbjct: 238 SASDDKTVKLWNR-NGQLLQTLTGHSS---SVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Query: 493 SQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVKLW 530
+ TL HS + V + P + I SA + VKLW
Sbjct: 294 QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 120/302 (39%), Gaps = 37/302 (12%)
Query: 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-----VKSRSHHPIQVRCLNEALKEA 297
R H+S V V F+ D + S S D TV +W+ +++ + H V + A
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV--AFSPD 68
Query: 298 RDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQ 357
+I S S K+ K NG L + + + GV S +
Sbjct: 69 GQTIASA-SDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTI-------AS 115
Query: 358 IGDVTPISIHN---SCFQALKEARDSITSVHVS--DHEILTASLDCRIRRYDIRTGNLVT 412
D + + N Q L S+ V S I +AS D ++ ++ R G L+
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 174
Query: 413 DYVG--EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 470
G + F+ D Q I + S D+ ++L+++ G+LL+ GH S + S
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS---SVRGVAFS 230
Query: 471 KDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGN-NVK 528
D Q +SD K K + + TL HS + VN + P + I SA + VK
Sbjct: 231 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVK 287
Query: 529 LW 530
LW
Sbjct: 288 LW 289
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 135/326 (41%), Gaps = 57/326 (17%)
Query: 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235
G+ ++ D +K+W+ L+T GH V ++ + I SG++D+++ +W
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 236 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALK 295
TG+ + H S V C+ +E V+SGS+D T+ +WD+++ +CL+
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETG-------QCLH---- 233
Query: 296 EARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNG--LLSGVLMSTQHLMVLLDFL 353
+L V A RC +G ++SG DF+
Sbjct: 234 -----------------------VLMGHVAAVRCVQYDGRRVVSGAY----------DFM 260
Query: 354 GSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTD 413
++ D +C L+ + + S+ +++ SLD IR +D+ TGN +
Sbjct: 261 --VKVWDPET----ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHT 314
Query: 414 YVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473
G + + +++ + D ++++D TG+ L+ +G + CL +
Sbjct: 315 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-TCLQFNKN 373
Query: 474 QIFCGSSDGKIYKWQLVDSSQISTLI 499
+ S DG + W L I L+
Sbjct: 374 FVITSSDDGTVKLWDLKTGEFIRNLV 399
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 110/274 (40%), Gaps = 51/274 (18%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D +I SG D ++ +W+ T + R H V C++++E V+I+GS D+TV +WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWD 199
Query: 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLL 336
V + + N L+ ++ NG++
Sbjct: 200 VNT---------------------------------GEMLNTLIHHCEAVLHLRFNNGMM 226
Query: 337 SGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASL 396
V S + + D T I + + L R ++ V D I++AS
Sbjct: 227 --VTCSKDRSIAVWDMASPTDI----------TLRRVLVGHRAAVNVVDFDDKYIVSASG 274
Query: 397 DCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 456
D I+ ++ T V G AC + +++ S+D +RL+D G L +G
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 457 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
H+ + C+ + +I G+ DGKI W LV
Sbjct: 335 HEE----LVRCIRFDNKRIVSGAYDGKIKVWDLV 364
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D Y ++ D+ IK+WN ++T GH + A + SG+SD ++ LW+
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWD 322
Query: 235 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ G +R H V C++F D+ ++SG+ D + +WD+
Sbjct: 323 IECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 176 GSYCLTCGS--------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
G YCL D IK+W+ + GH V D I +G+SD
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSD 192
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
+V +W+V TG+ + H V ++FN + ++++ S+D ++ +WD+ S
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMAS 242
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
R V GS SD I+LW+ L+ GH V D+ +I SGA D +
Sbjct: 307 RLVVSGS------SDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKI 358
Query: 231 ILWEVTTG-QP--------VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+W++ P +R EH+ +V ++F+E ++S S D+T+++WD
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 482
C D Q I++ D ++++DK T E GH CL + I GSSD
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL----CLQYDERVIITGSSDS 193
Query: 483 KIYKWQLVDSSQISTLIH 500
+ W + ++TLIH
Sbjct: 194 TVRVWDVNTGEMLNTLIH 211
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
F G +C +D IKLW+ ++T GH H V+ + + I S + DK++
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------HHPI 285
+WEV TG V+ + H V V+ N+D +++ S S D TV +W V ++ H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 286 QVRCLNEALKEARDSIT 302
V C++ A + + SI+
Sbjct: 278 VVECISWAPESSYSSIS 294
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/362 (21%), Positives = 139/362 (38%), Gaps = 61/362 (16%)
Query: 144 PKEWSIRVYRPLTVNRELFVLSG--------LMHTRFPVDGSYCLTCGSDKKIKLWNPYR 195
PKEW + RP E + LSG + H F V ++ D IK+W+
Sbjct: 91 PKEW---IPRP----PEKYALSGHRSPVTRVIFHPVFSV----MVSASEDATIKVWDYET 139
Query: 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255
+T GH V D + +AS ++D ++ LW+ + +R H V+ V
Sbjct: 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199
Query: 256 FNEDSSVVISGSQDNTVMMWD------VKSRSHHPIQVRCLNEALKEARDSITSVHSLVK 309
+ ++S S+D T+ MW+ VK+ + H VR ++ +D +L+
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM----VRPNQDG-----TLIA 250
Query: 310 STKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNS 369
S N + +V CK L +H++ + + S
Sbjct: 251 SCSN--DQTVRVWVVATKECK-------AELREHRHVVECISWAP-------------ES 288
Query: 370 CFQALKEARDSITSVHVSDHE-ILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTR 426
+ ++ EA S T +L+ S D I+ +D+ TG + VG + F
Sbjct: 289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 348
Query: 427 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 486
+ IL+C+ D+ LR++D ++ H+ F + GS D +
Sbjct: 349 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 487 WQ 488
W+
Sbjct: 407 WE 408
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 110 AIKEGYGCALLSKQRTHPLLFSLPRTITRILYELPKEWSIRVYRPLTVNRELFVLSGLMH 169
+I E G + P L S R T ++++ S + V + +V L H
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV----STGMCLMTLVGHDNWVRGVLFH 347
Query: 170 TRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 229
+ G + L+C DK +++W+ +KT H H V + + +G+ D++
Sbjct: 348 S----GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Query: 230 VILWE 234
V +WE
Sbjct: 404 VKVWE 408
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 373 ALKEARDSITSV--HVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDC 428
AL R +T V H +++AS D I+ +D TG+ G + + D F
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 429 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 488
+ + +CS D ++L+D E + GH + + I S D I W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG--DHIVSASRDKTIKMWE 220
Query: 489 L 489
+
Sbjct: 221 V 221
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 418 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477
P+ F +++ S D ++++D TG+ KGH D + D +
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLAS 167
Query: 478 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEEDY 536
S+D I W I T+ H V+S+ P HI+SA + +K+W + Y
Sbjct: 168 CSADMTIKLWDFQGFECIRTM-HGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 73/330 (22%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHHPI--QVR 288
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+ QVR
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 289 CL-NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ NE K DS+T + S N K+V A+
Sbjct: 156 VVPNE--KADDDSVT-----IISAGND-------KMVKAWNL--------------NQFQ 187
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIR 406
+ DF+G HNS L + D ++ + D EI+ +L + Y +
Sbjct: 188 IEADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLF----DKATGELLEEYKGH-KSGD 461
+ V P + L +T +++F +L E+ G+ K+ +
Sbjct: 236 AQDEVFSLAFSP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 462 FRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490
S D Q +F G +D I WQ++
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 135 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 235 V 235
+
Sbjct: 225 L 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVAT 96
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDS 218
S +M S ++ DK IK+W + L T GH V+ + A DS
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
I S +DK V W + Q + H S + + + D +++ S +D +M+W++
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 279 SR 280
++
Sbjct: 227 AK 228
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG ++ + I++ S D+ ++++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQ 139
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHN 196
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 73/330 (22%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHHPI--QVR 288
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+ QVR
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 289 CL-NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ NE K DS+T + S N K+V A+
Sbjct: 156 VVPNE--KADDDSVT-----IISAGND-------KMVKAWNL--------------NQFQ 187
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIR 406
+ DF+G HNS L + D ++ + D EI+ +L + Y +
Sbjct: 188 IEADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLF----DKATGELLEEYKGH-KSGD 461
+ V P + L +T +++F +L E+ G+ K+ +
Sbjct: 236 AQDEVFSLAFSP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 462 FRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490
S D Q +F G +D I WQ++
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 135 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 235 V 235
+
Sbjct: 225 L 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVAT 96
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDS 218
S +M S ++ DK IK+W + L T GH V+ + A DS
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
I S +DK V W + Q + H S + + + D +++ S +D +M+W++
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 279 SR 280
++
Sbjct: 227 AK 228
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG ++ + I++ S D+ ++++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQ 139
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHN 196
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 73/330 (22%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 38 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 89
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHHPI--QVR 288
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+ QVR
Sbjct: 90 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 149
Query: 289 CL-NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ NE K DS+T + S N K+V A+
Sbjct: 150 VVPNE--KADDDSVT-----IISAGND-------KMVKAWNL--------------NQFQ 181
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIR 406
+ DF+G HNS L + D ++ + D EI+ +L + Y +
Sbjct: 182 IEADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLF----DKATGELLEEYKGH-KSGD 461
+ V P + L +T +++F +L E+ G+ K+ +
Sbjct: 230 AQDEVFSLAFSP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 280
Query: 462 FRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 490
S D Q +F G +D I WQ++
Sbjct: 281 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 129 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 235 V 235
+
Sbjct: 219 L 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVAT 90
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDS 218
S +M S ++ DK IK+W + L T GH V+ + A DS
Sbjct: 102 SDVMSVDIDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
I S +DK V W + Q + H S + + + D +++ S +D +M+W++
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 220
Query: 279 SR 280
++
Sbjct: 221 AK 222
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG ++ + I++ S D+ ++++ G+
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQ 133
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 134 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHN 190
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 191 SNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 135/330 (40%), Gaps = 73/330 (22%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHHPI--QVR 288
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+ QVR
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 289 CL-NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ NE K DS+T + S N K+V A+
Sbjct: 156 VVPNE--KADDDSVT-----IISAGND-------KMVKAWNL--------------NQFQ 187
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIR 406
+ DF+G HNS L + D ++ + D EI+ +L + Y +
Sbjct: 188 IEADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLF----DKATGELLEEYKGHKSG-- 460
+ V P + L +T +++F +L E+ G+ +
Sbjct: 236 AQDEVFSLAFSP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE 286
Query: 461 DFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
+ + +F G +D I WQ++
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 135 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 235 V 235
+
Sbjct: 225 L 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVAT 96
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDS 218
S +M S ++ DK IK+W + L T GH V+ + A DS
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
I S +DK V W + Q + H S + + + D +++ S +D +M+W++
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 279 SR 280
++
Sbjct: 227 AK 228
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG ++ + I++ S D+ ++++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQ 139
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHN 196
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/328 (25%), Positives = 136/328 (41%), Gaps = 73/328 (22%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR------SHHPI--QVR 288
TG+ +R+ H S V V ++ +S++ISGS+D T+ +W +K + H+ QVR
Sbjct: 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR 155
Query: 289 CL-NEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLM 347
+ NE K DS+T + S N K+V A+
Sbjct: 156 VVPNE--KADDDSVT-----IISAGND-------KMVKAWNL--------------NQFQ 187
Query: 348 VLLDFLGSTQIGDVTPISIHNSCFQALKEARD-SITSVHVSDHEILTASLDCRIRRYDIR 406
+ DF+G HNS L + D ++ + D EI+ +L + Y +
Sbjct: 188 IEADFIG------------HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 407 TGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLF----DKATGELLEEYKGH-KSGD 461
+ V P + L +T +++F +L E+ G+ K+ +
Sbjct: 236 AQDEVFSLAFSP---------NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Query: 462 FRIECCLDSKDSQ-IFCGSSDGKIYKWQ 488
S D Q +F G +D I WQ
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQ 314
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D T D L+ S D+ LRL+D ATGE + + GHKS ++ +D K S I G
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG 125
Query: 479 SSDGKIYKWQL 489
S D I W +
Sbjct: 126 SRDKTIKVWTI 136
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 135 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D ++LW
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 235 V 235
+
Sbjct: 225 L 225
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVAT 96
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 165 SGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDS 218
S +M S ++ DK IK+W + L T GH V+ + A DS
Sbjct: 108 SDVMSVDIDKKASMIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
I S +DK V W + Q + H S + + + D +++ S +D +M+W++
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA 226
Query: 279 SR 280
++
Sbjct: 227 AK 228
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG ++ + I++ S D+ ++++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQ 139
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQIEADFIGHN 196
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGA 225
+FP L+ DK I +W R+ + + GH+H V+D + D SG+
Sbjct: 49 QFP---DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285
D ++ LW++TTG RR+ H V V F+ D+ ++SGS+D T+ +W+ + +
Sbjct: 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 165
Query: 286 QVRCLNEALKEARDSITSVHSLVKS 310
Q +E + R S S + ++ S
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVS 190
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
DG + L+ D ++LW+ + + GH +V + D+ QI SG+ DK++ LW
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Query: 235 VTTG--QPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDV---KSRSHHPIQV 287
T G + + H+ V+CV+F+ +SS +++S D V +W++ K +++H
Sbjct: 157 -TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 215
Query: 288 RCLN 291
LN
Sbjct: 216 GYLN 219
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTC 253
LK + G ++ AT I S + DK++I+W++T G P R R H+ V+
Sbjct: 34 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 254 VKFNEDSSVVISGSQDNTVMMWDVKS 279
V + D +SGS D T+ +WD+ +
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTT 117
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 180 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239
++CG DK +K+WN L + GH +N T + D S ASG D +LW++ G+
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 431 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
I++C D+ +++++ A +L + GH + + S G DG+ W L
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 491 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533
+ + TL G ++N+LC P R + +A G ++K+W E
Sbjct: 246 EGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLE 285
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D + D Q L+ S D LRL+D TG + GH + S + QI G
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIVSG 146
Query: 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN--VKLW 530
S D I W + + + S + V S + I+ +CG + VK+W
Sbjct: 147 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACDSSQ-- 220
++ F D ++ DK IKLWN L + Y H+ V+ + +SS
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
I S DK V +W + + H + V + D S+ SG +D M+WD+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 281 SH 282
H
Sbjct: 248 KH 249
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGA 225
+FP L+ DK I +W R+ + + GH+H V+D + D SG+
Sbjct: 26 QFP---DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 82
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285
D ++ LW++TTG RR+ H V V F+ D+ ++SGS+D T+ +W+ + +
Sbjct: 83 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV 142
Query: 286 QVRCLNEALKEARDSITSVHSLVKS 310
Q +E + R S S + ++ S
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVS 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
DG + L+ D ++LW+ + + GH +V + D+ QI SG+ DK++ LW
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Query: 235 VTTG--QPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDV---KSRSHHPIQV 287
T G + + H+ V+CV+F+ +SS +++S D V +W++ K +++H
Sbjct: 134 -TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT 192
Query: 288 RCLN 291
LN
Sbjct: 193 GYLN 196
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTC 253
LK + G ++ AT I S + DK++I+W++T G P R R H+ V+
Sbjct: 11 LKGHNGWVTQI--ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 254 VKFNEDSSVVISGSQDNTVMMWDVKS 279
V + D +SGS D T+ +WD+ +
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTT 94
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 431 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
I++C D+ +++++ A +L + GH + + S G DG+ W L
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 491 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533
+ + TL G ++N+LC P R + +A G ++K+W E
Sbjct: 223 EGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLE 262
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 180 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239
++CG DK +K+WN L + GH +N T + D S ASG D +LW++ G+
Sbjct: 166 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D + D Q L+ S D LRL+D TG + GH + S + QI G
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIVSG 123
Query: 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN--VKLW 530
S D I W + + + S + V S + I+ +CG + VK+W
Sbjct: 124 SRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACDSSQ-- 220
++ F D ++ DK IKLWN L + Y H+ V+ + +SS
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWN---TLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
I S DK V +W + + H + V + D S+ SG +D M+WD+
Sbjct: 165 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 281 SH 282
H
Sbjct: 225 KH 226
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 46/340 (13%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 229
F D SY TC +DKK+K+W+ L+ TY H+ +VN T + +A+G++D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-IQVR 288
+ LW++ + H + V +F+ D ++ S S D T+ +WDV+S + I V+
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL------NGLLSGVLMS 342
+ D V +VK + ++G K++ A + K L +GLL+ +
Sbjct: 792 ---RFFLSSEDPPEDVEVIVKCC-SWSADG--DKIIVAAKNKVLLFDIHTSGLLAEIHTG 845
Query: 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQ--------ALKEARDSITSVH-----VSDH 389
+ DF + + I++ C + + + R ++ VH
Sbjct: 846 HHSTIQYCDF---SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 902
Query: 390 EILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449
LTAS D IR ++ + + V + +D F + +L L+L TG+
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 962
Query: 450 LLEEYKGHKSGDFRIE-----CCLDSKDSQIFCGSSDGKI 484
+ D+ E CCL + G DG I
Sbjct: 963 I----------DYLPEAQVSCCCLSPHLEYVAFGDEDGAI 992
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ H F DG +CG+DK ++++ L H EV + D S IA+ +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 683
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSR 280
+DK V +W+ TG+ V + EH+ +V C F S+ ++ +GS D + +WD+ +
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476
+ + ACF++D Q I +C D+ L++F TGE L + K H+ D + C S DS I
Sbjct: 623 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIA 680
Query: 477 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNN---VKLW 530
S+D K+ W S L+H+ + C H T K H++ A G+N +KLW
Sbjct: 681 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264
H V A + D +IAS +DK++ +++ TG+ + + H +V C F+ D S +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 265 SGSQDNTVMMWD------VKSRSHHPIQVRC 289
+ S D V +WD V + H QV C
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNC 711
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S L+ D +K+WN + + + H V + D+++ +S ++DK+ +W
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
P+ + H V C F+ D ++ +G + + +W+V
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228
H +F DG ++ D I++WN ++ H V D D S++ S + D
Sbjct: 1015 HIQFTADGKTLISSSEDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQD-SRLLSWSFDG 1072
Query: 229 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
+V +W V TG+ R + H V + D++ S S D T +W
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
Y D IK+ N + + GH V D + S + D + +W T
Sbjct: 982 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
G V + H V + +DS ++S S D TV +W+V
Sbjct: 1042 GDYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1079
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
+A G D ++ + E+ + H V ++F D +IS S+D+ + +W+ ++
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 281 SHHPIQVRCLNEALKEAR 298
+ +Q E +K+ R
Sbjct: 1043 DYVFLQAH--QETVKDFR 1058
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/349 (18%), Positives = 137/349 (39%), Gaps = 50/349 (14%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLW-----NPYRNLLLKTYGGHAHE--------VNDATAA 215
H RF D +C +D ++LW N +++ +K + + + V + +
Sbjct: 755 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 814
Query: 216 CDSSQIASGASDKSVILWEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
D +I A +K V+L+++ T+G H S + F+ + + V +
Sbjct: 815 ADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVH---------SLVKSTKNHLSNGLLTKLVF 325
W++ SR + + R ++ VH S + ++ + TK V
Sbjct: 874 WNIDSRL-----------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 922
Query: 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385
L + V + +++ +D + Q+ I+ L EA+ S +
Sbjct: 923 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL-----IAGKTGQIDYLPEAQVSCCCLS 977
Query: 386 VSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLF 443
+ D I+ ++ + + VG + + FT D + +++ S D ++++
Sbjct: 978 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 444 DKATGELLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
+ TG+ + + H+ DFR+ +DS++ S DG + W ++
Sbjct: 1038 NWQTGDYV-FLQAHQETVKDFRL-----LQDSRLLSWSFDGTVKVWNVI 1080
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 46/340 (13%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 229
F D SY TC +DKK+K+W+ L+ TY H+ +VN T + +A+G++D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-IQVR 288
+ LW++ + H + V +F+ D ++ S S D T+ +WDV+S + I V+
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 289 CLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYL------NGLLSGVLMS 342
+ D V +VK + ++G K++ A + K L +GLL+ +
Sbjct: 785 ---RFFLSSEDPPEDVEVIVKCC-SWSADG--DKIIVAAKNKVLLFDIHTSGLLAEIHTG 838
Query: 343 TQHLMVLLDFLGSTQIGDVTPISIHNSCFQ--------ALKEARDSITSVH-----VSDH 389
+ DF + + I++ C + + + R ++ VH
Sbjct: 839 HHSTIQYCDF---SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS 895
Query: 390 EILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 449
LTAS D IR ++ + + V + +D F + +L L+L TG+
Sbjct: 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955
Query: 450 LLEEYKGHKSGDFRIE-----CCLDSKDSQIFCGSSDGKI 484
+ D+ E CCL + G DG I
Sbjct: 956 I----------DYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ H F DG +CG+DK ++++ L H EV + D S IA+ +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS 676
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSR 280
+DK V +W+ TG+ V + EH+ +V C F S+ ++ +GS D + +WD+ +
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476
+ + ACF++D Q I +C D+ L++F TGE L + K H+ D + C S DS I
Sbjct: 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIA 673
Query: 477 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNN---VKLW 530
S+D K+ W S L+H+ + C H T K H++ A G+N +KLW
Sbjct: 674 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264
H V A + D +IAS +DK++ +++ TG+ + + H +V C F+ D S +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 265 SGSQDNTVMMWD------VKSRSHHPIQVRC 289
+ S D V +WD V + H QV C
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNC 704
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S L+ D +K+WN + + + H V + D+++ +S ++DK+ +W
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
P+ + H V C F+ D ++ +G + + +W+V
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ H +F DG ++ D I++WN ++ H V D D S++ S +
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWN-WQTGDYVFLQAHQETVKDFRLLQD-SRLLSWS 1062
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
D +V +W V TG+ R + H V + D++ S S D T +W
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
Y D IK+ N + + GH V D + S + D + +W T
Sbjct: 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
G V + H V + +DS ++S S D TV +W+V
Sbjct: 1035 GDYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV 1072
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 221 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
+A G D ++ + E+ + H V ++F D +IS S+D+ + +W+ ++
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 281 SHHPIQVRCLNEALKEAR 298
+ +Q E +K+ R
Sbjct: 1036 DYVFLQAH--QETVKDFR 1051
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/349 (18%), Positives = 137/349 (39%), Gaps = 50/349 (14%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLW-----NPYRNLLLKTYGGHAHE--------VNDATAA 215
H RF D +C +D ++LW N +++ +K + + + V + +
Sbjct: 748 HCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807
Query: 216 CDSSQIASGASDKSVILWEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
D +I A +K V+L+++ T+G H S + F+ + + V +
Sbjct: 808 ADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 275 WDVKSRSHHPIQVRCLNEALKEARDSITSVH---------SLVKSTKNHLSNGLLTKLVF 325
W++ SR + + R ++ VH S + ++ + TK V
Sbjct: 867 WNIDSRL-----------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915
Query: 326 AFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVH 385
L + V + +++ +D + Q+ I+ L EA+ S +
Sbjct: 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL-----IAGKTGQIDYLPEAQVSCCCLS 970
Query: 386 VSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLRLF 443
+ D I+ ++ + + VG + + FT D + +++ S D ++++
Sbjct: 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 444 DKATGELLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 490
+ TG+ + + H+ DFR+ +DS++ S DG + W ++
Sbjct: 1031 NWQTGDYV-FLQAHQETVKDFRL-----LQDSRLLSWSFDGTVKVWNVI 1073
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S+ LT G D+K + P R ++ GH+H V D T D + S + DK++ LW+V
Sbjct: 44 SWKLT-GDDQKFGV--PVR-----SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
TG+ +R+ H S V V ++ +S +ISGS+D T+ +W +K +
Sbjct: 96 TGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ 139
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D T D L+ S D+ LRL+D ATGE + + GHKS ++ +D K S I G
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG 125
Query: 479 SSDGKIYKWQL 489
S D I W +
Sbjct: 126 SRDKTIKVWTI 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
DG+Y L+ DK ++LW+ + + GH +V +S I SG+ DK++ +W
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 234 EVTTGQPV------RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ GQ + W V K ++DS +IS D V W++
Sbjct: 135 TI-KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 197 LLLKTYGGHAHEVND-ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASK 250
+L T GH V AT+A + + S + DK++I W++T G PVR ++ H+
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
V D + +S S D T+ +WDV +
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVAT 96
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D ++ G+DK +K WN + + + GH +N TA+ D + IAS D + LW
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 235 V 235
+
Sbjct: 225 L 225
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN------DATAACDSSQIASGASDKS 229
S ++ DK IK+W + L T GH V+ + A DS I S +DK
Sbjct: 119 ASXIISGSRDKTIKVWT-IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 280
V W + Q + H S + + + D +++ S +D + +W++ ++
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 392 LTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
L+AS D +R +D+ TG +VG + + I++ S D+ ++++ G+
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQ 139
Query: 450 LLEEYKGHKSGDFRIECCLDSK---DS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG-K 504
L GH ++ + K DS I +D + W L +Q +G
Sbjct: 140 CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL---NQFQIEADFIGHN 196
Query: 505 AVVNSLCSHPTRKHIMSACGNN-VKLW 530
+ +N+L + P I SA + + LW
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 138/340 (40%), Gaps = 65/340 (19%)
Query: 173 PVDGSYCLTCGSDKKIKLW--NPYRNLLLKTYG-------GHAHEVNDATAACDSSQIAS 223
P + ++ DK + W NP R+ +YG GH+ V+D + + + S
Sbjct: 25 PETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVS 84
Query: 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 283
+ D S+ LW + GQ ++ H V V F+ D+ ++SG +DN + +W+VK H
Sbjct: 85 ASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMH 144
Query: 284 PIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMST 343
LS G T V R + L + V++S
Sbjct: 145 T------------------------------LSRGAHTDWVSCVR--FSPSLDAPVIVSG 172
Query: 344 --QHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTAS--LDCR 399
+L+ + D + D LK + +TSV VS L AS D
Sbjct: 173 GWDNLVKVWDLATGRLVTD-------------LKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 400 IRRYDIRTGNLVTDY-VGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 458
R +D+ G +++ G PI CF+ + + + +T++ +R+FD +++ E
Sbjct: 220 ARLWDLTKGEALSEMAAGAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEH 278
Query: 459 SGDFRI--EC---CLDSKDSQIFCGSSDGKIYKWQLVDSS 493
G +I EC + S ++ G +D I W + +++
Sbjct: 279 QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLL-LKTYGGHAHEVN--DATAACDSSQIAS 223
++ F D ++ G D +++WN + + G H V+ + + D+ I S
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
G D V +W++ TG+ V + H + VT V + D S+ S +D +WD+
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 111/291 (38%), Gaps = 39/291 (13%)
Query: 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSV 304
R + + C + E ++ V+S S+D T++ W P R +E D
Sbjct: 13 RGWVTSLACPQTPETATKVVSTSRDKTLLSWG-------PNPDRHSSECSYGLPDRRLEG 65
Query: 305 HSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPI 364
HS S +NG FA + + L L + Q+ FLG T+ DV +
Sbjct: 66 HSAFVSDVALSNNG-----NFAVSASWDHSLR---LWNLQNGQCQYKFLGHTK--DVLSV 115
Query: 365 SIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVGEPIVDACF 424
+ Q + RD+ V E + + + G TD+V V
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNVKGECM----------HTLSRGAH-TDWVS--CVRFSP 162
Query: 425 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS--DG 482
+ D I++ D ++++D ATG L+ + KGH + + D C SS DG
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS----LCASSDKDG 218
Query: 483 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533
W L +S + A +N +C P R + +A ++++ E
Sbjct: 219 VARLWDLTKGEALSEM---AAGAPINQICFSPNRYWMCAATEKGIRIFDLE 266
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSSQIASGASDKS 229
F D + TC DKK+K+WN L+ TY H+ +VN T + +A+G+SD
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 230 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
+ LW++ + H + V +F+ D ++ S S D T+ +WD S
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 166 GLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA 225
+ H F DG +CG+DK ++++ L H EV + D IA+ +
Sbjct: 623 AVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCS 682
Query: 226 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSR 280
DK V +W TG+ V + EH+ +V C F S ++ +GS D + +WD+ +
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 476
+ + ACF+ D Q I +C D+ L++F TGE L E K H+ + CC S D +
Sbjct: 622 DAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED---EVLCCAFSTDDRFI 678
Query: 477 CG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNN---VKLW 530
S D K+ W +S L+H+ + C H T H++ A G++ +KLW
Sbjct: 679 ATCSVDKKVKIW----NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 177 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
S L+ D +K+WN K + H V + D+++ +S ++DK+ +W
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFD 1121
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
P+ R H V C F+ DS+++ +G + + +W+V
Sbjct: 1122 LLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 264
H V A + D +IAS +DK++ +++ TG+ + + H +V C F+ D +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 265 SGSQDNTVMMWD------VKSRSHHPIQVRC 289
+ S D V +W+ V + H QV C
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNC 710
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 89/420 (21%), Positives = 150/420 (35%), Gaps = 84/420 (20%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
+ DG+ + +K LL + + GH + + + S V
Sbjct: 812 WSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVE 871
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291
LW + V R H S V V F+ D S ++ S D T+ +W+ K C N
Sbjct: 872 LWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK--------VCKN 923
Query: 292 EA--LKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ----- 344
A LK+ D + + ++ +H+ R + +NG + T+
Sbjct: 924 SAVMLKQEVDVVFQENEVMVLAVDHIR-----------RLQLINGRTGQIDYLTEAQVSC 972
Query: 345 -----HLMVLL--DFLGSTQIGDVTPISIHNSCFQALKEA------RDSITSVHVSD--- 388
HL + D G+ +I ++ I S FQ K D T + SD
Sbjct: 973 CCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAE 1032
Query: 389 ----------------HE-------------ILTASLDCRIRRYDIRTGNLVTDYV-GEP 418
H+ +L+ S D ++ ++I TGN D+V +
Sbjct: 1033 IQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQG 1092
Query: 419 IVDAC-FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 477
V +C + D + S D+ +++ L E +GH + C S DS +
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGC---VRCSAFSVDSTLLA 1149
Query: 478 -GSSDGKIYKWQLVDSS--QISTLIHSVGKAV----VNSLCSHPTRKHIMSACGNNVKLW 530
G +G+I W + + + + G A V LC P K ++SA G +K W
Sbjct: 1150 TGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISA-GGYIKWW 1208
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGAS 226
H +F D ++ D +I++WN + + L+ GH V D +S++ S +
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRL-LKNSRLLSWSF 1069
Query: 227 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
D +V +W + TG + + H V + D++ S S D T +W
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 13/141 (9%)
Query: 148 SIRVYRPLTVNREL-FV--LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG 204
+++V+ +T N+E FV ++ D + + +DK K+W+ L L G
Sbjct: 1072 TVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRG 1131
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ------PVRR--WREHASKVTCVKF 256
H V + + DS+ +A+G + + +W V+ G+ P+ H VT + F
Sbjct: 1132 HNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCF 1191
Query: 257 NEDSSVVISGSQDNTVMMWDV 277
+ D ++IS + W+V
Sbjct: 1192 SPDGKMLISAG--GYIKWWNV 1210
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 162 FVLSGLM--HTRF------PVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYG-------GH 205
VL G M HT P+D + + S DK I LW ++ K YG GH
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD--KAYGVAQRRLTGH 429
Query: 206 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVIS 265
+H V D + D SG+ D + LW++ G RR+ H V V F+ D+ ++S
Sbjct: 430 SHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS 489
Query: 266 GSQDNTVMMWD 276
S+D T+ +W+
Sbjct: 490 ASRDRTIKLWN 500
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
DG + L+ D +++LW+ + + + GH +V + D+ QI S + D+++ LW
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Query: 235 V---------TTGQPVRRWREHASKVTCVKFNEDS--SVVISGSQDNTVMMWDV 277
G+ R W V+CV+F+ ++ ++S S D TV +W++
Sbjct: 501 TLGECKYTISEGGEGHRDW------VSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 185 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 244
DK +K+WN L T GH V+ + D S ASG D V+LW++ G+ +
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS- 598
Query: 245 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281
E S + + F+ + + + ++ + + +WD++S+S
Sbjct: 599 LEANSVIHALCFSPNRYWLCAATE-HGIKIWDLESKS 634
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 212 ATAACDSSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTCVKFNEDSSVVISG 266
AT ++ I S + DKS+ILW++T G RR H+ V V + D +SG
Sbjct: 389 ATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448
Query: 267 SQDNTVMMWDVKS 279
S D + +WD+ +
Sbjct: 449 SWDGELRLWDLAA 461
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 430 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 489
I++ S D+ +++++ + +L GH + + S G DG + W L
Sbjct: 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Query: 490 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 533
+ ++ +L +V+++LC P R + +A + +K+W E
Sbjct: 591 AEGKKLYSL---EANSVIHALCFSPNRYWLCAATEHGIKIWDLE 631
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D + D Q L+ S D LRL+D A G + GH + LD++ QI
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR--QIVSA 490
Query: 479 SSDGKIYKW 487
S D I W
Sbjct: 491 SRDRTIKLW 499
>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With
Flavin
Length = 318
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 31 FRQLVRSHNVDLCFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRATQ 90
FR L D F+ + A F+ +S+ + E P + + VQ + ++ A +
Sbjct: 20 FRTLAFEWGADFAFSEXVSAKGFLXNSQ-KTEELLPQPHERNVAVQIFGSEPNELSEAAR 78
Query: 91 YVAPHCNGVDLNCGCPQRWAIKEGYGCALLSKQR 124
++ +DLN GCP R +KEG G ALL R
Sbjct: 79 ILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLR 112
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 44/281 (15%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
+ +Y +T DK I++++ L GH V A + SG++D++V +W+
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD 189
Query: 235 VTTGQPVRRWREHASKVTCVKFNEDSSV--VISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292
+ G + H S V C+ E ++ +++GS+DNT+ +W + S P
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH------ 243
Query: 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ------HL 346
E D H+ ++ Y G+L G + S + ++
Sbjct: 244 --GEEHDYPLVFHTPEEN-------------------PYFVGVLRGHMASVRTVSGHGNI 282
Query: 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE---ILTASLDCRIRRY 403
+V + + + DV + C L D I S + DHE ++AS+D IR +
Sbjct: 283 VVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYST-IYDHERKRCISASMDTTIRIW 337
Query: 404 DIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFD 444
D+ G L+ G + + +++ + D +R +D
Sbjct: 338 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 115/314 (36%), Gaps = 60/314 (19%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+ + + +GA DK + +++ + + + H V +K+ +++SGS D TV +WD
Sbjct: 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWD 189
Query: 277 VKSR------SHHPIQVRCLN--------EALKEARDSITSVHSLVK--STKNHLSNGLL 320
+K H VRCL+ + +RD+ V L K S +H G
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH---GEE 246
Query: 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380
F N GVL + V +S H +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRG--------------HMASVRTVSGHGNI---------- 282
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDE 438
+++ S D + +D+ + G + I + + + ++ S D
Sbjct: 283 ----------VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 439 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 498
+R++D GEL+ +GH + + L D + ++DG I W D S+ +
Sbjct: 333 TIRIWDLENGELMYTLQGHTA----LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388
Query: 499 IHSVGKAVVNSLCS 512
H+ A+ S
Sbjct: 389 HHTNLSAITTFYVS 402
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDEC 439
IT + D+ ++T + D IR YD + G + V A +++ STD
Sbjct: 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 440 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ----IFCGSSDGKIYKWQLVDSSQI 495
+R++D G ++GH S CLD + + I GS D ++ W+L S +
Sbjct: 185 VRVWDIKKGCCTHVFEGHNS----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228
H V GSY D + +W+ + L GH + + + S + D
Sbjct: 279 HGNIVVSGSY------DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 229 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281
++ +W++ G+ + + H + V ++ ++ ++S + D ++ WD S
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 8/120 (6%)
Query: 168 MHTRFPVDGSYC------LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN--DATAACDSS 219
MHT + S+ LT D LW+ LL+++ GH +V D + +
Sbjct: 152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 279
SG DK ++W++ +GQ V+ + H S V V++ SGS D T ++D+++
Sbjct: 212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA 271
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 235
G+ ++ G DKK +W+ ++ + H +VN ASG+ D + L+++
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 236 TTGQPVRRWREHA--SKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
+ V + + + + V F+ ++ +G D T+ +WDV
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 242 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-VKSRSHHPIQVRC 289
R + H +KV C+ + +D ++S SQD V++WD + H + + C
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC 106
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 223 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
+G +D ++ +W+V G V H ++V+ ++ + D + SGS D+T+ +W
Sbjct: 301 AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 420 VDAC-FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ AC FT ILT S D L+D +G+LL+ + GH + ++ + G
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSG 216
Query: 479 SSDGKIYKWQL 489
D K W +
Sbjct: 217 GCDKKAMVWDM 227
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 147 WSIRVYRPLTVNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA 206
+ +R R + + + ++ G F + G +D I +W+ + + GH
Sbjct: 267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE 326
Query: 207 HEVNDATAACDSSQIASGASDKSVILW 233
+ V+ + D + SG+ D ++ +W
Sbjct: 327 NRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 387 SDHEILTASLDCRIRRYDIRTGNLVTDYVGEPI----VDACFTRDCQCILTCSTDECLRL 442
SD +ILTAS D +D+ +G L+ + G +D + ++ D+ +
Sbjct: 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV 224
Query: 443 FDKATGELLEEYKGHKS 459
+D +G+ ++ ++ H+S
Sbjct: 225 WDMRSGQCVQAFETHES 241
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 175 DGSYCLTCGSDKKIKLW-------NPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD 227
D ++ DK + +W N Y + K GH H V+D + ++ S + D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 228 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
K++ LW++ TG +R+ H S+V V F+ D+ ++S + + +W++
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 236
Y + G D ++K+WN N ++ T+ H VN + + + IA+G DK +++W++
Sbjct: 186 YFASVGWDGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Query: 237 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI 285
+R + S + + FN V G+ D V ++++ ++S P+
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPV 291
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 255 KFNEDSSVVISGSQDNTVMMWDV 277
K NEDS V+ISGS+D TVM+W +
Sbjct: 34 KENEDSPVLISGSRDKTVMIWKL 56
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 217 DSSQIASGASDKSVILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQD 269
DS + SG+ DK+V++W++ G P + H V+ + ++++ IS S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 270 NTVMMWDVKS 279
T+ +WD+++
Sbjct: 98 KTLRLWDLRT 107
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
+ D +++ ++ S D+ LRL+D TG + + GH+S + + D++ QI
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR--QILSA 136
Query: 479 SSDGKIYKWQLVDSSQIST 497
++ +I W ++ + S+
Sbjct: 137 GAEREIKLWNILGECKFSS 155
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 110/281 (39%), Gaps = 44/281 (15%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
+ +Y +T DK I++++ L GH V A + SG++D++V +W+
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD 189
Query: 235 VTTGQPVRRWREHASKVTCVKFNEDSSV--VISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292
+ G + H S V C+ E ++ +++GS+DNT+ +W + S P
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH------ 243
Query: 293 ALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQ------HL 346
E D H+ ++ Y G+L G S + ++
Sbjct: 244 --GEEHDYPLVFHTPEEN-------------------PYFVGVLRGHXASVRTVSGHGNI 282
Query: 347 MVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHE---ILTASLDCRIRRY 403
+V + + + DV C L D I S + DHE ++AS D IR +
Sbjct: 283 VVSGSYDNTLIVWDVA----QXKCLYILSGHTDRIYST-IYDHERKRCISASXDTTIRIW 337
Query: 404 DIRTGNLVTDYVGEPIVDACFTRDCQCILTCSTDECLRLFD 444
D+ G L G + + +++ + D +R +D
Sbjct: 338 DLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 60/314 (19%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+ + + +GA DK + +++ + + + H V +K+ +++SGS D TV +WD
Sbjct: 131 EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWD 189
Query: 277 VKSR------SHHPIQVRCLN--------EALKEARDSITSVHSLVK--STKNHLSNGLL 320
+K H VRCL+ + +RD+ V L K S +H G
Sbjct: 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH---GEE 246
Query: 321 TKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDS 380
F N GVL V +S H +
Sbjct: 247 HDYPLVFHTPEENPYFVGVLRG--------------HXASVRTVSGHGNI---------- 282
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDE 438
+++ S D + +D+ + G + I + + + ++ S D
Sbjct: 283 ----------VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 439 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 498
+R++D GEL +GH + + L D + ++DG I W D S+ +
Sbjct: 333 TIRIWDLENGELXYTLQGHTA----LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSY 388
Query: 499 IHSVGKAVVNSLCS 512
H+ A+ S
Sbjct: 389 HHTNLSAITTFYVS 402
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 381 ITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG-EPIVDACFTRDCQCILTCSTDEC 439
IT + D+ ++T + D IR YD + G + V A +++ STD
Sbjct: 125 ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
Query: 440 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ----IFCGSSDGKIYKWQLVDSSQI 495
+R++D G ++GH S CLD + + I GS D ++ W+L S +
Sbjct: 185 VRVWDIKKGCCTHVFEGHNS----TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV 240
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 8/113 (7%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 228
H V GSY D + +W+ + L GH + + + S + D
Sbjct: 279 HGNIVVSGSY------DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 229 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 281
++ +W++ G+ + H + V ++ ++ ++S + D ++ WD S
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
F DG + T D+ I++W+ ++ GH ++ ++ SG+ D++V
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLN 291
+W++ TGQ T D + +GS D V +WD ++ ++ N
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSEN 249
Query: 292 EALKEARDSITSV 304
E+ +DS+ SV
Sbjct: 250 ESGTGHKDSVYSV 262
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 173 PVDGSYCLTCGSDKKIKLWNPYRNLLLK-------TYGGHAHEVNDATAACDSSQIASGA 225
P DG Y D+ +++W+ L++ + GH V D + SG+
Sbjct: 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 226 SDKSVILWEV------------TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 273
D+SV LW + +G + H V V ++ ++SGS+D V+
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 274 MWDVKS 279
WD KS
Sbjct: 336 FWDKKS 341
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 55/290 (18%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D +A+GA D+ + +W++ + V + H + + + ++SGS D TV +WD
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 193
Query: 277 VKSRSHHPIQVRCLNEALKEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLL 336
+++ +C D +T+V ++ +++ G L + V + +
Sbjct: 194 LRTG-------QC--SLTLSIEDGVTTV-AVSPGDGKYIAAGSLDRAVRVWDSE------ 237
Query: 337 SGVLMSTQHLMVLLDFLGSTQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASL 396
T L+ LD + G H ++ RD +++ SL
Sbjct: 238 ------TGFLVERLDSENESGTG-------HKDSVYSVVFTRDG--------QSVVSGSL 276
Query: 397 DCRIRRYDIRTGNLVTD------------YVGEP--IVDACFTRDCQCILTCSTDECLRL 442
D ++ ++++ N +D Y+G ++ T++ + IL+ S D +
Sbjct: 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 336
Query: 443 FDKATGELLEEYKGHKSGDFRIECCLDSK---DSQIFC-GSSDGKIYKWQ 488
+DK +G L +GH++ + S + +F GS D K W+
Sbjct: 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 172 FPVDGSYCLTCGSDKKIKLWN------------PYRNLLLKTYGGHAHEVNDATAACDSS 219
F DG ++ D+ +KLWN P TY GH V +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS------VVISGSQDNTVM 273
I SG+ D+ V+ W+ +G P+ + H + V V SS V +GS D
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 274 MWDVK 278
+W K
Sbjct: 384 IWKYK 388
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 419 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 478
I CF+ D + + T + D +R++D +++ +GH+ + ++ S D ++ G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD-YFPSGD-KLVSG 183
Query: 479 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEEDY 536
S D + W L + +L S+ V S K+I + + V++W +E +
Sbjct: 184 SGDRTVRIWDL--RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 180 LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 239
LT +DK IKLW + ++KT+ G ++V A D S ++D + L + TG
Sbjct: 159 LTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGD 216
Query: 240 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
+R + H S V C+K + +V G +D TV +W
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 384 VHVSDHEILTASLDCRIRRYDIRTGNLVTDYVG--EPIVDACFTRDCQCILTCSTDECLR 441
V S+++ LTAS D I+ + + ++ + G +V D ++CS D ++
Sbjct: 151 VSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208
Query: 442 LFDKATGELLEEYKGHKS 459
L D TG++L Y+GH+S
Sbjct: 209 LVDXHTGDVLRTYEGHES 226
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 90/248 (36%), Gaps = 54/248 (21%)
Query: 236 TTGQ-PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEAL 294
T+G+ P+ H V + F + VVISGS D T +W
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVW------------------- 129
Query: 295 KEARDSITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG 354
KE SLV + + H ++ K+V K+L + Q+ V+ F G
Sbjct: 130 KEG--------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG 181
Query: 355 STQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDY 414
IHN + L V D ++ S D I+ D TG+++ Y
Sbjct: 182 -----------IHNDVVRHLAV---------VDDGHFISCSNDGLIKLVDXHTGDVLRTY 221
Query: 415 VG-EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 473
G E V I++C D +R++ K G L + + ++C +
Sbjct: 222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC---XSNG 278
Query: 474 QIFCGSSD 481
I GSSD
Sbjct: 279 DIIVGSSD 286
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 174 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
VD + ++C +D IKL + + +L+TY GH V + I S D++V +W
Sbjct: 193 VDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVY-CIKLLPNGDIVSCGEDRTVRIW 251
Query: 234 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
G + A + V + +++ GS DN V +
Sbjct: 252 SKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNLVRI 291
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216
V+REL +G + +D + +T D LW+ T+ GH +V + A
Sbjct: 146 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 205
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D+ SGA D S LW+V G + + H S + + F + + +GS D T ++D
Sbjct: 206 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Query: 277 VKS 279
+++
Sbjct: 266 LRA 268
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
++ LS TR V G+ D KLW+ + +T+ GH ++N + +
Sbjct: 197 DVMSLSLAPDTRLFVSGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 250
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
A+G+ D + L+++ Q + + +T V F++ ++++G D +WD
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 260 SSVVISGSQDNTVMMWDVKSR 280
+ V G DN ++++K+R
Sbjct: 120 GNYVACGGLDNICSIYNLKTR 140
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216
V+REL +G + +D + +T D LW+ T+ GH +V + A
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D+ SGA D S LW+V G + + H S + + F + + +GS D T ++D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 277 VKS 279
+++
Sbjct: 255 LRA 257
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
++ LS TR V G+ D KLW+ + +T+ GH ++N + +
Sbjct: 186 DVMSLSLAPDTRLFVSGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
A+G+ D + L+++ Q + + +T V F++ ++++G D +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 260 SSVVISGSQDNTVMMWDVKSR 280
+ V G DN ++++K+R
Sbjct: 109 GNYVACGGLDNICSIYNLKTR 129
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216
V+REL +G + +D + +T D LW+ T+ GH +V + A
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D+ SGA D S LW+V G + + H S + + F + + +GS D T ++D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 277 VKS 279
+++
Sbjct: 255 LRA 257
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
++ LS TR V G+ D KLW+ + +T+ GH ++N + +
Sbjct: 186 DVMSLSLAPDTRLFVSGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
A+G+ D + L+++ Q + + +T V F++ ++++G D +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 260 SSVVISGSQDNTVMMWDVKSR 280
+ V G DN ++++K+R
Sbjct: 109 GNYVACGGLDNICSIYNLKTR 129
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216
V+REL +G + +D + +T D LW+ T+ GH +V + A
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D+ SGA D S LW+V G + + H S + + F + + +GS D T ++D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 277 VKS 279
+++
Sbjct: 255 LRA 257
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
++ LS TR V G+ D KLW+ + +T+ GH ++N + +
Sbjct: 186 DVMSLSLAPDTRLFVSGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
A+G+ D + L+++ Q + + +T V F++ ++++G D +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 260 SSVVISGSQDNTVMMWDVKSR 280
+ V G DN ++++K+R
Sbjct: 109 GNYVACGGLDNICSIYNLKTR 129
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%)
Query: 157 VNRELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 216
V+REL +G + +D + +T D LW+ T+ GH +V + A
Sbjct: 135 VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP 194
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D+ SGA D S LW+V G + + H S + + F + + +GS D T ++D
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Query: 277 VKS 279
+++
Sbjct: 255 LRA 257
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 160 ELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
++ LS TR V G+ D KLW+ + +T+ GH ++N + +
Sbjct: 186 DVMSLSLAPDTRLFVSGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN 239
Query: 220 QIASGASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
A+G+ D + L+++ Q + + +T V F++ ++++G D +WD
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%)
Query: 200 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 259
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 260 SSVVISGSQDNTVMMWDVKSR 280
+ V G DN ++++K+R
Sbjct: 109 GNYVACGGLDNICSIYNLKTR 129
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 180 LTCGSDKKIKLWNPYRN--LLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEV 235
L ++LW N L++ + + H+ V+ + +Q SG+ D + +W++
Sbjct: 97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156
Query: 236 TTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK 278
+ +R HA++VTCV + SV +S S+DN +++WD +
Sbjct: 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 176 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWE 234
G+ ++ D IK+W+ + ++L +Y HA +V A+ S S + D ++LW+
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 235 VTTGQPVRRWREHASKVTCVKFN----------EDSSVVISGSQDNTVMMWDVKSRS 281
+P AS++ C + S V + G ++ TV + D KS S
Sbjct: 199 TRCPKP-------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVND-ATAACDSSQIASGASDKS 229
Y L+ D I LW+ P + ++ + GH V D A S S A D+
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+++W+ T +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVND-ATAACDSSQIASGASDKS 229
Y L+ D I LW+ P + ++ + GH V D A S S A D+
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+++W+ T +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVND-ATAACDSSQIASGASDKS 229
Y L+ D I LW+ P + ++ + GH V D A S S A D+
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+++W+ T +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 30 NFRQLVRSHNVDL-CFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88
+FR LVR ++ + +T M + + ++ ++ R F PE+ P+ +Q A ++ A
Sbjct: 18 HFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFR--PEEHPIALQLAGSDPKSLAEA 75
Query: 89 TQY-VAPHCNGVDLNCGCPQRWAIKEGYG-CALLSKQRTHPLLFSL 132
+ A + ++LN GCP A + GYG C LL R +L ++
Sbjct: 76 ARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAM 121
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVR 288
W H +KV CV ++ D+ + +GS DN+V++W++ S HPI ++
Sbjct: 532 WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 576
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNP--------YRNLLLKTYGGHAHEVNDATAACDSSQIA 222
R+ DGS + G D I L+N + + LK H+ V T + D ++IA
Sbjct: 197 RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWSPDGTKIA 255
Query: 223 SGASDKSVILWEVTT 237
S ++DK++ +W V T
Sbjct: 256 SASADKTIKIWNVAT 270
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 193 PYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE------ 246
P++ T+G H V+ D S AS D +++L+ G + +
Sbjct: 179 PFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV 236
Query: 247 -HASKVTCVKFNEDSSVVISGSQDNTVMMWDV---KSRSHHPIQVRCLNEAL 294
H+ V + ++ D + + S S D T+ +W+V K P+ R ++ L
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYGGHAHEVNDATAACDSSQIASGASDK 228
F +G++ + +K+ ++ N L ++ H +V + + D+ ++A+G+ D
Sbjct: 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558
Query: 229 SVILWEVT--TGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDV 277
SVI+W + + P+ HA S V V + ++++V +G QD+ + W+V
Sbjct: 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG-QDSNIKFWNV 609
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 220 QIASGASDKSVILWEVTTGQPVR---RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+I SG+ D +V ++E G P + + EH V V++N D S+ S D T+++++
Sbjct: 162 RIISGSDDNTVAIFE---GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVND-ATAACDSSQIASGASDKS 229
+ L+ D + LW+ P ++ + GH+ V D A S S A D+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+++W+ TT +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 180 LTCGSDKKIKLWNPYRNLLLKTYG-----GHAHEV-NDATAACDSSQIASGASDKSVILW 233
+T D+ LW+ + +G GH +V + + + +++ SG+ D +V LW
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 234 EV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQV 287
++ T + VR + H + VKF D +GS D T ++D+ R+ H +QV
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM--RTGHQLQV 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWRE-----HASKVTCVKFNE-DSSVVISGSQDNTV 272
+++ +G+ D++ +LW+VTTGQ + + H + V + N ++++ ISGS D TV
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 273 MMWDVK 278
+WD++
Sbjct: 231 RLWDLR 236
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 113/310 (36%), Gaps = 48/310 (15%)
Query: 191 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK 250
+NP + +T GH+ +V + + I S + D +I+W T Q + H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310
V F + V G D+ ++++ S++ RD V ++
Sbjct: 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQAD---------------RDGNMPVSRVLTG 155
Query: 311 TKNHLSNGLLTKLVFAFRCKYL----NGLLSGVLMSTQHLMVLLDFLGSTQIGDVTPISI 366
K + S+ C+Y+ L++G S VL D +I SI
Sbjct: 156 HKGYASS-----------CQYVPDQETRLITG---SGDQTCVLWDVTTGQRI------SI 195
Query: 367 HNSCFQALKEARDSITSVH-VSDHEILTASLDCRIRRYDIR-TGNLVTDYVGEP--IVDA 422
S F + A S++ ++ + ++ S D +R +D+R T V Y G I
Sbjct: 196 FGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
Query: 423 CFTRDCQCILTCSTDECLRLFDKATGELLEEY-----KGHKSGDFRIECCLDSKDSQIFC 477
F D Q T S D RLFD TG L+ Y + +F
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA 315
Query: 478 GSSDGKIYKW 487
G S+G Y W
Sbjct: 316 GYSNGDCYVW 325
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 98/226 (43%), Gaps = 45/226 (19%)
Query: 263 VISGSQDNTVMMWDVKSRSH---------------HPIQVRCLNEALK--EARDSITSVH 305
++SG D ++++D+++ S HP R E ++ + +
Sbjct: 59 MLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118
Query: 306 SLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFLG-STQIGDVTPI 364
S K+ K +N L T VF F + +S V ST+H +V + G Q+ D+
Sbjct: 119 SFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV--STKHCLVAVGTRGPKVQLCDLKS- 175
Query: 365 SIHNSCFQALKEARDSITSVHVS---DHEILTASLDCRIRRYDIR--TGNLVT--DYVGE 417
SC L+ R I +V S D+ + TAS D R++ +D+R +G L+T + G+
Sbjct: 176 ---GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK 232
Query: 418 P--------------IVDACFTRDCQCILTCSTDECLRLFDKATGE 449
+ CFT D +LT TD +RL++ + GE
Sbjct: 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYG---GHAHEVNDATAACD-SSQIASGAS 226
F DG + LT G+D +++LWN L YG ++ + T +C SS+
Sbjct: 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312
Query: 227 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
++ ++ V +G+ + + H V C F + + SGS+D ++ W
Sbjct: 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVND-ATAACDSSQIASGASDKS 229
+ L+ D + LW+ P ++ + GH+ V D A S S A D+
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+ +W+ TT +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 167 LMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 226
L ++ +G +C D +W L T GH + C + +G++
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 227 DKSVILWEVTTGQPVRRWR 245
D S+ LW+V+ GQ V W+
Sbjct: 95 DYSIKLWDVSNGQCVATWK 113
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 204 GHAHEVND-ATAACDSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVK 255
GH V D A + + IASG+ D +V++WE+ G +PV H +V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 256 FNEDS-SVVISGSQDNTVMMWDVKS 279
++ + +V++S DN +++WDV +
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGT 163
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ--IASGASDKSVIL 232
DG+ ++ G D +K+W+ + +LK+Y H+ EVN AAC S D ++L
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILL 208
Query: 233 WEVTTGQPVRR 243
W+ +P R
Sbjct: 209 WDTRKPKPATR 219
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 180 LTCGSDKKIKLWN--PYRNLLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEV 235
L ++LW +LL+ + + H+ V + D +Q SG D SV +W++
Sbjct: 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 236 TTGQPVRRWREHASKVTCVKF-NEDSSVVISGSQDNTVMMWDVK 278
+ ++ + H+S+V CV ++ +S +D +++WD +
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 47/146 (32%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEV 235
Y L+ D +KLWN N L +T+ GH H V A D S ASG D++V +W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 236 ---------TTGQP-------------------------VRRW-----------REHASK 250
TTGQ ++ W H S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWD 276
V+ F+ ++ISGS+D T+ +W+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATG 448
I+ S D RIR ++ TG V D+ P I +L+ S D ++L++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 449 ELLEE-YKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAV 506
LE+ ++GH+ F + + KD F G D + W L S+ TL +
Sbjct: 130 WALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG- 186
Query: 507 VNSLCSH--PTRKHIMSACGN-NVKLW 530
VN + + P + ++++A + +K+W
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+F ++ + D +I+++N + + H + + SG+ D +V
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 231 ILWEVTTGQPVRRWRE-HASKVTCVKFN-EDSSVVISGSQDNTVMMW 275
LW + + E H V CV FN +D S SG D TV +W
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 42/99 (42%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
+ LT ++++WN + +++ V + I G+ D + ++ T
Sbjct: 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
G+ V + H + + + V+SGS D TV +W+
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 172 FPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+P+ D Y +T D IK+W+ + T GH V+ A I SG+ D ++
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 231 ILWEVTT 237
+W +T
Sbjct: 253 KIWNSST 259
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 474
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 55/189 (29%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEV 235
Y L+ D +KLWN N L +T+ GH H V A D S ASG D++V +W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 236 ---------TTGQP-------------------------VRRW-----------REHASK 250
TTGQ ++ W H S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSITSVHSLVKS 310
V+ F+ ++ISGS+D T+ +W+ S + ++ + LN L+ R + H +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWN---SSTYKVE-KTLNVGLE--RSWCIATHPTGR- 283
Query: 311 TKNHLSNGL 319
KN++++G
Sbjct: 284 -KNYIASGF 291
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATG 448
I+ S D RIR ++ TG V D+ P I +L+ S D ++L++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 449 ELLEE-YKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAV 506
LE+ ++GH+ F + + KD F G D + W L S+ TL +
Sbjct: 130 WALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG- 186
Query: 507 VNSLCSH--PTRKHIMSACGN-NVKLW 530
VN + + P + ++++A + +K+W
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
+ LT +++LWN + +++ V + I G+ D + ++ T
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
G+ V + H + + + V+SGS D TV +W+
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 2/107 (1%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+F ++ + D +I+++N + + H + + SG+ D +V
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 231 ILWEVTTGQPVRRWRE-HASKVTCVKFN-EDSSVVISGSQDNTVMMW 275
LW + + E H V CV FN +D S SG D TV +W
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 172 FPV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+P+ D Y +T D IK+W+ + T GH V+ A I SG+ D ++
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 231 ILWEVTT 237
+W +T
Sbjct: 253 KIWNSST 259
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 47/146 (32%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEV 235
Y L+ D +KLWN N L +T+ GH H V A D S ASG D++V +W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 236 ---------TTGQP-------------------------VRRW-----------REHASK 250
TTGQ ++ W H S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWD 276
V+ F+ ++ISGS+D T+ +W+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATG 448
I+ S D RIR ++ TG V D+ P I +L+ S D ++L++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 449 ELLEE-YKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAV 506
LE+ ++GH+ F + + KD F G D + W L S+ TL + V
Sbjct: 130 WALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 507 -VNSLCSHPTRKHIMSACGN-NVKLW 530
P + ++++A + +K+W
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+F ++ + D +I+++N + + H + + SG+ D +V
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 231 ILWEVTTGQPVRRWRE-HASKVTCVKFN-EDSSVVISGSQDNTVMMWDV 277
LW + + E H V CV FN +D S SG D TV +W +
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
+ LT +++LWN + +++ V + I G+ D + ++ T
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
G+ V + H + + + V+SGS D TV +W+
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D Y +T D IK+W+ + T GH V+ A I SG+ D ++ +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 235 VTT 237
+T
Sbjct: 257 SST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 57/146 (39%), Gaps = 47/146 (32%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEV 235
Y L+ D +KLWN N L +T+ GH H V A D S ASG D++V +W +
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Query: 236 ---------TTGQP-------------------------VRRW-----------REHASK 250
TTGQ ++ W H S
Sbjct: 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN 230
Query: 251 VTCVKFNEDSSVVISGSQDNTVMMWD 276
V+ F+ ++ISGS+D T+ +W+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGEP--IVDACFTRDCQCILTCSTDECLRLFDKATG 448
I+ S D RIR ++ TG V D+ P I +L+ S D ++L++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 449 ELLEE-YKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAV 506
LE+ ++GH+ F + + KD F G D + W L S+ TL + V
Sbjct: 130 WALEQTFEGHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 507 -VNSLCSHPTRKHIMSACGN-NVKLW 530
P + ++++A + +K+W
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Query: 171 RFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 230
+F ++ + D +I+++N + + H + + SG+ D +V
Sbjct: 62 KFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 231 ILWEVTTGQPVRRWRE-HASKVTCVKFN-EDSSVVISGSQDNTVMMWDV 277
LW + + E H V CV FN +D S SG D TV +W +
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 42/99 (42%)
Query: 178 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
+ LT +++LWN + +++ V + I G+ D + ++ T
Sbjct: 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86
Query: 238 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
G+ V + H + + + V+SGS D TV +W+
Sbjct: 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D Y +T D IK+W+ + T GH V+ A I SG+ D ++ +W
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 235 VTT 237
+T
Sbjct: 257 SST 259
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 391 ILTASLDCRIRRYDIRTGNLVTDYVGE--PIVDACFTRDCQCILTCSTDECLRLFDKATG 448
+ + ++D I +DI TG L+ G PI F+ D Q ++T S D ++++D
Sbjct: 179 LASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 449 ELLEEYKGHKSGDFRIECCLD 469
L GH S + C D
Sbjct: 239 NLAGTLSGHASWVLNVAFCPD 259
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 159 RELFVLSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 218
R F+LS + DG Y + D I +++ LL T GHA + T + DS
Sbjct: 163 RGKFILS----IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 219 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
+ + + D + +++V HAS V V F D + +S S D +V +WDV
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG 278
Query: 279 SRS 281
+R+
Sbjct: 279 TRT 281
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%)
Query: 172 FPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 231
F D +T D IK+++ L T GHA V + D + S +SDKSV
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273
Query: 232 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
+W+V T V + +H +V VK+N + S ++S D + ++D
Sbjct: 274 VWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 413 DYVGEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 472
D G+ I+ ++ D + + + + D + +FD ATG+LL +GH I S D
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPD 217
Query: 473 SQIFCGSSDG---KIYKWQ 488
SQ+ +SD KIY Q
Sbjct: 218 SQLLVTASDDGYIKIYDVQ 236
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 178 YCLTCGSDKKIKLWN----PYRNLLLKT---YGGHAHEVNDAT-AACDSSQIASGASDKS 229
+ L+ D I LW+ P ++ + GH V D + S S A D+
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 230 VILWEV---TTGQPVRRWREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKS 279
+++W+ T +P H ++V C+ FN S +++ GS D TV +WD+++
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 474
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
pdb|3B0V|D Chain D, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
Length = 363
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 30 NFRQLVRSHNVDL-CFTPMIIADSFIKSSKARNNEFSTSPEDTPLVVQFASNNHDDFVRA 88
+FR LVR ++ + +T + + ++ ++ R F PE+ P+ +Q A ++ A
Sbjct: 39 HFRFLVRQVSLGVRLYTEXTVDQAVLRGNRERLLAFR--PEEHPIALQLAGSDPKSLAEA 96
Query: 89 TQY-VAPHCNGVDLNCGCPQRWAIKEGYG-CALLSKQRTHPLL 129
+ A + ++LN GCP A + GYG C LL R +L
Sbjct: 97 ARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREIL 139
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 474
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 71
Query: 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 111
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 208 EVNDATAAC-------DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 260
E+ + AC DS S SD ++ +W++ VR+++ H +C+ + D
Sbjct: 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195
Query: 261 SVVISGSQDNTVMMWDVK 278
+ + +G DNTV WD++
Sbjct: 196 TKLWTGGLDNTVRSWDLR 213
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%)
Query: 175 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 234
D C +C SD I +W+ + L++ + GH + + D +++ +G D +V W+
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 235 VTTGQPVRR 243
+ G+ +++
Sbjct: 212 LREGRQLQQ 220
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 391 ILTASLDCRIRRYDIRTGN--LVTDYVGE--PIVDACFTRDC--QCILTCSTDECLRLF- 443
+ T S D ++ +D+R G L+ D G P+ + + +CS D + ++
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 444 -DKATGELLEEYKGHKSGDFRIECCLDSKDSQIF--CGSSDGKIY--------KWQLVDS 492
+ T E E+ GH S + C D + CGSSDG I +W++
Sbjct: 88 EENGTWEKSHEHAGHDSSVNSV--CWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI 145
Query: 493 SQISTL----IHSVGKAVVNSLCSHPT-------RKHIMSACGNNVKLWTAEED 535
+ T+ + V SL HP+ ++ C N +KLW EED
Sbjct: 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 9/85 (10%)
Query: 204 GHAHEVND-ATAACDSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVK 255
GH V D A + + IASG+ D +V++WE+ G +PV H +V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 256 FNEDS-SVVISGSQDNTVMMWDVKS 279
++ + +V++S DN +++WDV +
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGT 163
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 173 PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---DSSQIASGASDKS 229
P G + +T GSD+KI ++ LK V A DS + A+ +D +
Sbjct: 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275
Query: 230 VILWEVTTGQPVRRW 244
+ +W+VTT + V++W
Sbjct: 276 IRVWDVTTSKCVQKW 290
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 474
E I DA + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 EXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 173 PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC---DSSQIASGASDKS 229
P G + +T GSD+KI ++ LK V A DS + A+ +D +
Sbjct: 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275
Query: 230 VILWEVTTGQPVRRW 244
+ +W+VTT + V++W
Sbjct: 276 IRVWDVTTSKCVQKW 290
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 417 EPIVDACFTRDCQCILTCSTDECLRLFD--KATGELLEEYKGHKSGDFRIECCLDSKDSQ 474
E I DA + + TCS+D+ +++F+ T +L++ GH+ +R++ +
Sbjct: 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTI 69
Query: 475 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 514
+ S DGK+ W+ + +H+V A VNS+ P
Sbjct: 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP 109
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 205 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--NEDSSV 262
H V D + D S++ + + DK+ +W++++ Q ++ +H + V + + + S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI-AQHDAPVKTIHWIKAPNYSC 143
Query: 263 VISGSQDNTVMMWDVKSRSHHPIQVRCLNE 292
V++GS D T+ WD +RS +P+ V L E
Sbjct: 144 VMTGSWDKTLKFWD--TRSSNPMMVLQLPE 171
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 221 IASGASDKSVILWEVT-TGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 278
+ +G+ V WEV +GQ + + ++ H V V +++D S V + S D T MWD+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 279 S 279
S
Sbjct: 117 S 117
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 169 HTRFPVDGSYCLTCGSDKKIKLW-------NPYRNLLLKTYGGHAHEVNDATAACDSSQI 221
HT GS+ D + +W + LL GH +EV + D +
Sbjct: 69 HTSLLAAGSF------DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYL 122
Query: 222 ASGASDKSVILWEV-TTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
A+ + DKSV +WE +G+ + +EH+ V V ++ +++ S S D+TV +W
Sbjct: 123 ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 16/164 (9%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243
++ IK+ + NL + H E+ + S + D + +W V G R
Sbjct: 114 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT 173
Query: 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT- 302
H + VT + + V+S S D T+ +W+ + + I E + +SI
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIAL 231
Query: 303 ------SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340
+H + S KN+L G K V A G +SGV+
Sbjct: 232 FVGTDRQLHEISTSKKNNLEFGTYGKYVIA-------GHVSGVI 268
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS 223
+S + +F G ++ D ++K+W+ +T GH V D + S
Sbjct: 136 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 195
Query: 224 GASDKSVILWEVTTGQPVRRW 244
+ D ++ LWE TG + +
Sbjct: 196 ASLDGTIRLWECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 16/164 (9%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 243
++ IK+ + NL + H E+ + S + D + +W V G R
Sbjct: 117 TEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT 176
Query: 244 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARDSIT- 302
H + VT + + V+S S D T+ +W+ + + I E + +SI
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIAL 234
Query: 303 ------SVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVL 340
+H + S KN+L G K V A G +SGV+
Sbjct: 235 FVGTDRQLHEISTSKKNNLEFGTYGKYVIA-------GHVSGVI 271
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 34/81 (41%)
Query: 164 LSGLMHTRFPVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS 223
+S + +F G ++ D ++K+W+ +T GH V D + S
Sbjct: 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS 198
Query: 224 GASDKSVILWEVTTGQPVRRW 244
+ D ++ LWE TG + +
Sbjct: 199 ASLDGTIRLWECGTGTTIHTF 219
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 254
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 255 KFNEDSSVVIS---GSQDNTVMMWDV 277
+ S V++ G+ D + +W+V
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 187 KIKLWNPYRNLLLKTYGG----HAHEVNDATAACDS-----SQIAS-------------- 223
K W P+++ +L T GG H N + AC S SQ+ S
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 350
Query: 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
G + +++W+ T V + H S+V + + D + V S + D T+ +W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 190 LWNPYRNLLLKTYG---------------------GHAHEVNDATAACDSSQIASGASDK 228
LW+P+ L+ +G GH V T + D + +AS A+D+
Sbjct: 338 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 229 SVILWEVTTGQPV-RRWREHAS 249
++ LW P RR RE AS
Sbjct: 398 TLRLWRCFELDPARRREREKAS 419
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 254
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 255 KFNEDSSVVIS---GSQDNTVMMWDV 277
+ S V++ G+ D + +W+V
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 187 KIKLWNPYRNLLLKTYGG----HAHEVNDATAACDS-----SQIAS-------------- 223
K W P+++ +L T GG H N + AC S SQ+ S
Sbjct: 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 339
Query: 224 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
G + +++W+ T V + H S+V + + D + V S + D T+ +W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 190 LWNPYRNLLLKTYG---------------------GHAHEVNDATAACDSSQIASGASDK 228
LW+P+ L+ +G GH V T + D + +AS A+D+
Sbjct: 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 229 SVILWEVTTGQPV-RRWREHAS 249
++ LW P RR RE AS
Sbjct: 387 TLRLWRCFELDPARRREREKAS 408
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 199 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----PVRRWREHASKVTCV 254
+ T GH+ EV A D +ASG +D V +W G+ P++ + +H V V
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 255 KFNEDSSVVIS---GSQDNTVMMWDV 277
+ S V++ G+ D + +W+V
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNV 228
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWEVTTGQPVR 242
SD+ I++WN L H+ + + I+ G + +++W+ T V
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278
Query: 243 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 275
+ H S+V + + D + V S + D T+ +W
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 149 IRVYRPLTVN-RELFVLSG--LMHTRF-PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203
IR+ P+T+ + +V G + +F P D + L+ D ++LWN + L+ +G
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 204 --GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246
GH EV A +I S D S+ LW + + + + +E
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 196
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 181 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDSSQIASGASDKSVILWEVTTGQ 239
GS I++ NP +K Y GH + +N+ D + + S + D ++ LW + T
Sbjct: 85 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 144
Query: 240 PVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296
V + H +V ++ ++S D+++ +W + S+ R +N A+KE
Sbjct: 145 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-------RMMN-AIKE 196
Query: 297 ARD 299
+ D
Sbjct: 197 SYD 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 149 IRVYRPLTVN-RELFVLSG--LMHTRF-PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203
IR+ P+T+ + +V G + +F P D + L+ D ++LWN + L+ +G
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 204 --GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246
GH EV A +I S D S+ LW + + + + +E
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 181 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDSSQIASGASDKSVILWEVTTGQ 239
GS I++ NP +K Y GH + +N+ D + + S + D ++ LW + T
Sbjct: 89 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 148
Query: 240 PVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296
V + H +V ++ ++S D+++ +W + S+ R +N A+KE
Sbjct: 149 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-------RMMN-AIKE 200
Query: 297 ARD 299
+ D
Sbjct: 201 SYD 203
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 149 IRVYRPLTVN-RELFVLSG--LMHTRF-PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203
IR+ P+T+ + +V G + +F P D + L+ D ++LWN + L+ +G
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 204 --GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246
GH EV A +I S D S+ LW + + + + +E
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 201
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 181 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDSSQIASGASDKSVILWEVTTGQ 239
GS I++ NP +K Y GH + +N+ D + + S + D ++ LW + T
Sbjct: 90 VAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149
Query: 240 PVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKE 296
V + H +V ++ ++S D+++ +W + S+ R +N A+KE
Sbjct: 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-------RMMN-AIKE 201
Query: 297 ARD 299
+ D
Sbjct: 202 SYD 204
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 149 IRVYRPLTVN-RELFVLSG--LMHTRF-PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203
IR+ P+T+ + +V G + +F P D + L+ D ++LWN + L+ +G
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 204 --GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 246
GH EV A +I S D S+ LW + + + + +E
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 183 GSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDSSQIASGASDKSVILWEVTTGQPV 241
GS I++ NP +K Y GH + +N+ D + + S + D ++ LW + T V
Sbjct: 91 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 150
Query: 242 RRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298
+ H +V ++ ++S D+++ +W + S+ R +N A+KE+
Sbjct: 151 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-------RMMN-AIKESY 202
Query: 299 D 299
D
Sbjct: 203 D 203
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 149 IRVYRPLTVN-RELFVLSG--LMHTRF-PVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG- 203
IR+ P+T+ + +V G + +F P D + L+ D ++LWN + L+ +G
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 204 --GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 237
GH EV A +I S D S+ LW + +
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 228
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 183 GSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-AACDSSQIASGASDKSVILWEVTTGQPV 241
GS I++ NP +K Y GH + +N+ D + + S + D ++ LW + T V
Sbjct: 128 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLV 187
Query: 242 RRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEAR 298
+ H +V ++ ++S D+++ +W + S+ R +N A+KE+
Sbjct: 188 AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK-------RMMN-AIKESY 239
Query: 299 D 299
D
Sbjct: 240 D 240
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 217 DSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
D +QIA ++ V ++E + + V +EH +VT V + DS+ +++ D +
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 275 WDVKSRSHHPIQV--------RCLNEALKEARDSITS 303
W +K R+ P V RC+ A E + ++ S
Sbjct: 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 217 DSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
D +QIA ++ V ++E + + V +EH +VT + + DS+ +++ D +
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 275 WDVKSRSHHPIQV--------RCLNEALKEARDSITS 303
W +K R+ P V RC+ A E + ++ S
Sbjct: 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 217 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 276
D + I +G + + LW TG + H + + VK+N+D + +IS +N ++W+
Sbjct: 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 277 VKS 279
V S
Sbjct: 178 VIS 180
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 167 LMHTRFPVDGSYCLTCGSDKKIKLWNP-----YRNLLLKTYGGHAHEVNDATAA------ 215
++ ++ DG++ ++ + LWN ++ LK GG + + +
Sbjct: 152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211
Query: 216 ---CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 272
D + ++ ++++T P + H ++ ++FN+ + +++S S D T+
Sbjct: 212 VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTL 271
Query: 273 MMW 275
+W
Sbjct: 272 RIW 274
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 176 GSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 233
G+Y + D +W ++ + T GH +EV A + +A+ + DKSV +W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 234 EVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 274
EV V H V V ++ ++ S S D+TV +
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 176 GSYCLTCGSDKKIKLWNPYRN-LLLKTY--GGHAHEVNDATAACDSSQIASGASDKSVIL 232
G+ +CG D++I++W + + K+ GH V + + +AS + D + +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 233 WEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 283
W+ + V H ++V V + +++ + S+D +V +W+V +
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|F Chain F, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|B Chain B, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|G Chain G, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|C Chain C, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|H Chain H, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|D Chain D, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|I Chain I, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|E Chain E, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
pdb|1SOS|J Chain J, Atomic Structures Of Wild-type And Thermostable Mutant
Recombinant Human Cu, Zn Superoxide Dismutase
Length = 154
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|2C9S|F Chain F, 1.24 Angstroms Resolution Structure Of Zn-Zn Human
Superoxide Dismutase
pdb|3T5W|A Chain A, 2me Modified Human Sod1
pdb|3T5W|B Chain B, 2me Modified Human Sod1
pdb|3T5W|D Chain D, 2me Modified Human Sod1
pdb|3T5W|E Chain E, 2me Modified Human Sod1
pdb|3T5W|F Chain F, 2me Modified Human Sod1
pdb|3T5W|G Chain G, 2me Modified Human Sod1
pdb|3T5W|H Chain H, 2me Modified Human Sod1
pdb|3T5W|I Chain I, 2me Modified Human Sod1
pdb|3T5W|J Chain J, 2me Modified Human Sod1
pdb|3T5W|K Chain K, 2me Modified Human Sod1
pdb|3T5W|L Chain L, 2me Modified Human Sod1
pdb|3T5W|M Chain M, 2me Modified Human Sod1
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
pdb|1OZU|B Chain B, Crystal Structure Of Familial Als Mutant S134n Of Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod:
The Structural Effects Of Dimerization
pdb|1L3N|B Chain B, The Solution Structure Of Reduced Dimeric Copper Zinc Sod:
The Structural Effects Of Dimerization
pdb|2AF2|A Chain A, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2AF2|B Chain B, Solution Structure Of Disulfide Reduced And Copper
Depleted Human Superoxide Dismutase
pdb|2LU5|A Chain A, Structure And Chemical Shifts Of Cu(I),Zn(Ii) Superoxide
Dismutase By Solid-State Nmr
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant
pdb|1N19|B Chain B, Structure Of The Hsod A4v Mutant
Length = 154
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form
pdb|3QQD|B Chain B, Human Sod1 H80r Variant, P212121 Crystal Form
Length = 154
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera
pdb|3GTV|B Chain B, Human-Mouse Sod1 Chimera
pdb|3GTV|C Chain C, Human-Mouse Sod1 Chimera
pdb|3GTV|D Chain D, Human-Mouse Sod1 Chimera
pdb|3GTV|E Chain E, Human-Mouse Sod1 Chimera
pdb|3GTV|F Chain F, Human-Mouse Sod1 Chimera
pdb|3GTV|G Chain G, Human-Mouse Sod1 Chimera
pdb|3GTV|H Chain H, Human-Mouse Sod1 Chimera
pdb|3GTV|I Chain I, Human-Mouse Sod1 Chimera
pdb|3GTV|J Chain J, Human-Mouse Sod1 Chimera
pdb|3GTV|K Chain K, Human-Mouse Sod1 Chimera
pdb|3GTV|L Chain L, Human-Mouse Sod1 Chimera
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
pdb|2R27|B Chain B, Constitutively Zinc-Deficient Mutant Of Human Superoxide
Dismutase (Sod), C6a, H80s, H83s, C111s
Length = 154
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|B Chain B, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|C Chain C, C6aC111A CUZN SUPEROXIDE DISMUTASE
pdb|2GBT|D Chain D, C6aC111A CUZN SUPEROXIDE DISMUTASE
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|B Chain B, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|C Chain C, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|D Chain D, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|E Chain E, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|F Chain F, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|G Chain G, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|H Chain H, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|I Chain I, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
pdb|1N18|J Chain J, Thermostable Mutant Of Human Superoxide Dismutase, C6a,
C111s
Length = 154
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|F Chain F, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|B Chain B, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|G Chain G, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|C Chain C, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|H Chain H, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|D Chain D, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|I Chain I, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|E Chain E, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
pdb|1FUN|J Chain J, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu,
Cys 6 Replaced By Ala And Cys 111 Replaced By Ser
(K136e, C6a, C111s)
Length = 153
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f
Length = 153
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLFGFHVHEEEDNTAGCTSA 60
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|B Chain B, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
pdb|1P1V|C Chain C, Crystal Structure Of Fals-Associated Human Copper-Zinc
Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a
Length = 153
Score = 32.0 bits (71), Expect = 0.89, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
pdb|2VR8|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.36 A Resolution
Length = 154
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|E Chain E, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|F Chain F, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|G Chain G, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|H Chain H, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|I Chain I, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
pdb|2ZKY|J Chain J, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G93a
Length = 159
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 31 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 66
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii
pdb|3CQQ|B Chain B, Human Sod1 G85r Variant, Structure Ii
Length = 153
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKW|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group P21
pdb|2ZKX|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|B Chain B, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|C Chain C, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
pdb|2ZKX|D Chain D, Crystal Structure Of Human Cu-Zn Superoxide Dismutase
Mutant G85r In Space Group I212121
Length = 159
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 31 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 66
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|B Chain B, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|C Chain C, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|D Chain D, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|E Chain E, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|F Chain F, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|G Chain G, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|H Chain H, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|I Chain I, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate.
pdb|4B3E|J Chain J, Structure Of Copper-Zinc Superoxide Dismutase Complexed
With Bicarbonate
Length = 154
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|B Chain B, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|C Chain C, Human Sod1 H80r Variant, P21 Crystal Form
pdb|3H2Q|D Chain D, Human Sod1 H80r Variant, P21 Crystal Form
Length = 153
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant
pdb|3H2P|B Chain B, Human Sod1 D124v Variant
Length = 153
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|B Chain B, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|C Chain C, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL4|D Chain D, The Structure Of Apo Type Human Cu, Zn Superoxide
Dismutase
pdb|1SPD|A Chain A, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
pdb|1SPD|B Chain B, Amyotrophic Lateral Sclerosis And Structural Defects In
Cu,Zn Superoxide Dismutase
Length = 154
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1
pdb|1UXM|B Chain B, A4v Mutant Of Human Sod1
pdb|1UXM|C Chain C, A4v Mutant Of Human Sod1
pdb|1UXM|D Chain D, A4v Mutant Of Human Sod1
pdb|1UXM|E Chain E, A4v Mutant Of Human Sod1
pdb|1UXM|F Chain F, A4v Mutant Of Human Sod1
pdb|1UXM|G Chain G, A4v Mutant Of Human Sod1
pdb|1UXM|H Chain H, A4v Mutant Of Human Sod1
pdb|1UXM|I Chain I, A4v Mutant Of Human Sod1
pdb|1UXM|J Chain J, A4v Mutant Of Human Sod1
pdb|1UXM|K Chain K, A4v Mutant Of Human Sod1
pdb|1UXM|L Chain L, A4v Mutant Of Human Sod1
Length = 153
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant
pdb|3GZQ|B Chain B, Human Sod1 A4v Metal-Free Variant
Length = 154
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|B Chain B, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|C Chain C, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|D Chain D, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|E Chain E, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|F Chain F, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|G Chain G, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|H Chain H, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|I Chain I, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|J Chain J, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|K Chain K, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|L Chain L, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|M Chain M, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|N Chain N, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|O Chain O, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|P Chain P, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|Q Chain Q, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1HL5|S Chain S, The Structure Of Holo Type Human Cu, Zn Superoxide
Dismutase
pdb|1PU0|A Chain A, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|B Chain B, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|C Chain C, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|D Chain D, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|E Chain E, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|F Chain F, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|G Chain G, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|H Chain H, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|I Chain I, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|1PU0|J Chain J, Structure Of Human Cu,Zn Superoxide Dismutase
pdb|2C9U|A Chain A, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9U|F Chain F, 1.24 Angstroms Resolution Structure Of As-Isolated Cu-Zn
Human Superoxide Dismutase
pdb|2C9V|A Chain A, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2C9V|F Chain F, Atomic Resolution Structure Of Cu-Zn Human Superoxide
Dismutase
pdb|2V0A|A Chain A, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|2V0A|F Chain F, Atomic Resolution Crystal Structure Of Human Superoxide
Dismutase
pdb|3ECU|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1)
pdb|3ECU|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1)
pdb|3ECU|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1)
pdb|3ECU|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1)
pdb|3KH3|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|G Chain G, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|H Chain H, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|I Chain I, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|J Chain J, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|K Chain K, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH3|L Chain L, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P212121
Crystal Form Containing 12 Chains In The Asymmetric Unit
pdb|3KH4|A Chain A, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|B Chain B, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|C Chain C, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|D Chain D, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|E Chain E, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3KH4|F Chain F, Crystal Structure Of Human CuZN SUPEROXIDE DISMUTASE
RECOMBINANTLY Produced In Leishmania Tarantolae; P6522
Crystal Form Containing 6 Chains In The Asymmetric Unit
pdb|3RE0|A Chain A, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1) Complexed With Cisplatin
pdb|3RE0|B Chain B, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1) Complexed With Cisplatin
pdb|3RE0|C Chain C, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1) Complexed With Cisplatin
pdb|3RE0|D Chain D, Crystal Structure Of Human Apo Cu,Zn Superoxide Dismutase
(Sod1) Complexed With Cisplatin
Length = 153
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
pdb|2VR7|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.58 A Resolution
Length = 154
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1
pdb|1UXL|B Chain B, I113t Mutant Of Human Sod1
pdb|1UXL|C Chain C, I113t Mutant Of Human Sod1
pdb|1UXL|D Chain D, I113t Mutant Of Human Sod1
pdb|1UXL|E Chain E, I113t Mutant Of Human Sod1
pdb|1UXL|F Chain F, I113t Mutant Of Human Sod1
pdb|1UXL|G Chain G, I113t Mutant Of Human Sod1
pdb|1UXL|H Chain H, I113t Mutant Of Human Sod1
pdb|1UXL|I Chain I, I113t Mutant Of Human Sod1
pdb|1UXL|J Chain J, I113t Mutant Of Human Sod1
pdb|3ECV|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECV|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
I113t Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|4A7G|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space Group.
pdb|4A7Q|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4-(4-
Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21 Space
Group.
pdb|4A7Q|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 4-(4-
Methyl-1,4-Diazepan-1-Yl)quinazoline In The P21 Space
Group.
pdb|4A7S|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7S|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With 5-
Fluorouridine In The P21 Space Group
pdb|4A7T|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7T|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Isoproteranol In The P21 Space Group
pdb|4A7U|A Chain A, Structure Of Human I113t Sod1 Complexed With Adrenaline In
The P21 Space Group.
pdb|4A7U|F Chain F, Structure Of Human I113t Sod1 Complexed With Adrenaline In
The P21 Space Group.
pdb|4A7V|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
pdb|4A7V|F Chain F, Structure Of Human I113t Sod1 Mutant Complexed With
Dopamine In The P21 Space Group
Length = 153
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|B Chain B, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|C Chain C, Human Sod1 G93a Metal-Free Variant
pdb|3GZP|D Chain D, Human Sod1 G93a Metal-Free Variant
pdb|2WZ6|A Chain A, G93a Sod1 Mutant Complexed With Quinazoline.
pdb|2WZ6|F Chain F, G93a Sod1 Mutant Complexed With Quinazoline
Length = 153
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant
pdb|3GZO|B Chain B, Human Sod1 G93a Variant
pdb|3GZO|C Chain C, Human Sod1 G93a Variant
pdb|3GZO|D Chain D, Human Sod1 G93a Variant
pdb|3GZO|E Chain E, Human Sod1 G93a Variant
pdb|3GZO|F Chain F, Human Sod1 G93a Variant
pdb|3GZO|G Chain G, Human Sod1 G93a Variant
pdb|3GZO|H Chain H, Human Sod1 G93a Variant
pdb|3GZO|I Chain I, Human Sod1 G93a Variant
pdb|3GZO|J Chain J, Human Sod1 G93a Variant
pdb|2WKO|A Chain A, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a
Length = 154
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 26 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 61
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|2VR6|F Chain F, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn
Superoxide Dismutase (Cuznsod) At 1.3 A Resolution
pdb|3CQP|A Chain A, Human Sod1 G85r Variant, Structure I
pdb|3CQP|B Chain B, Human Sod1 G85r Variant, Structure I
pdb|3CQP|C Chain C, Human Sod1 G85r Variant, Structure I
pdb|3CQP|D Chain D, Human Sod1 G85r Variant, Structure I
Length = 153
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human)
pdb|1AZV|B Chain B, Familial Als Mutant G37r Cuznsod (Human)
Length = 153
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKRLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4-
Methylpiperazin-1-Yl)quinazoline In The P21 Space Group
Length = 153
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of
Human Copper, Zinc Superoxide Dismutase Bearing The Same
Charge As The Native Protein
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC
Resolution
pdb|1KMG|A Chain A, The Solution Structure Of Monomeric Copper-Free Superoxide
Dismutase
pdb|1RK7|A Chain A, Solution Structure Of Apo Cu,Zn Superoxide Dismutase: Role
Of Metal Ions In Protein Folding
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn
Ligands
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide
Dismutase, Nmr, 36 Structures
Length = 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEEEDNTAGCTSA 60
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 393 TASLDCRIRRYDIRTGNLVTDYVGEPIVD 421
+A+LDC ++ YD+R + Y+ P+VD
Sbjct: 168 SAALDCALKDYDVRVNTVHPGYIKTPLVD 196
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 393 TASLDCRIRRYDIRTGNLVTDYVGEPIVD 421
+A+LDC ++ YD+R + Y+ P+VD
Sbjct: 168 SAALDCALKDYDVRVNTVHPGYIKTPLVD 196
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 196 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 255
N + T GH+ EV D Q+ASG +D V +W+ + P H + V V
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266
Query: 256 FNEDSSVVIS---GSQDNTVMMWDVKS 279
+ S +++ G+ D + W+ +
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAAT 293
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump
pdb|2WYZ|F Chain F, L38v Sod1 Mutant Complexed With Ump
Length = 153
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + + +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals)
Mutant H43r
pdb|1PTZ|B Chain B, Crystal Structure Of The Human Cu, Zn Superoxide
Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals)
Mutant H43r
Length = 153
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLRGFHVHEFGDNTAGCTSA 60
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WYT|F Chain F, 1.0 A Resolution Structure Of L38v Sod1 Mutant
pdb|2WZ0|A Chain A, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ0|F Chain F, L38v Sod1 Mutant Complexed With Aniline.
pdb|2WZ5|A Chain A, L38v Sod1 Mutant Complexed With L-Methionine.
pdb|2WZ5|F Chain F, L38v Sod1 Mutant Complexed With L-Methionine
Length = 153
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + + +G H HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGVTEGLHGFHVHEFGDNTAGCTSA 60
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 31/250 (12%)
Query: 241 VRRWREHASKVTCVKFN-EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRCLNEALKEARD 299
+ R+ H+S V VKFN + +V+ SG + + +WD+ + P L
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG-----Q 160
Query: 300 SITSVHSLVKSTKNHLSNGLLTKLVFAFRCKYLNGLLSGVLMSTQHLMVLLDFL----GS 355
S++SV ++ N L F + S + + ++ L + G
Sbjct: 161 SMSSVDEVISLAWNQ-------SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213
Query: 356 TQIGDVTPISIHNSCFQALKEARDSITSVHVSDHEILTASLDCRIRRYDIRTGNLVTDYV 415
Q V NS A D+ S+ + D + A+ + + G L D+
Sbjct: 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWD--LRNANTPLQTLNQGHQKGILSLDW- 270
Query: 416 GEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 475
C +D +L+ D + L++ + E L ++ + F+ + ++ D +
Sbjct: 271 -------CH-QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD--L 320
Query: 476 F-CGSSDGKI 484
F C S D KI
Sbjct: 321 FACASFDNKI 330
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 466 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 524 GNNVKLWTAEEDYGQG 539
+++ +YG G
Sbjct: 121 DGLIEV-IDPRNYGDG 135
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 466 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 524 GNNVKLWTAEEDYGQG 539
+++ +YG G
Sbjct: 121 DGLIEV-IDPRNYGDG 135
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 466 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 524 GNNVKLWTAEEDYGQG 539
+++ +YG G
Sbjct: 121 DGLIEV-IDPRNYGDG 135
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 466 CC--LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 523
CC +D+ D QI+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120
Query: 524 GNNVKLWTAEEDYGQG 539
+++ +YG G
Sbjct: 121 DGLIEV-IDPRNYGDG 135
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|B Chain B, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|C Chain C, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
pdb|3ECW|D Chain D, Crystal Structure Of The Als-Related Pathological Mutant
T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1)
Length = 153
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G H HE D A C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFHVHEFGDNRAGCTSA 60
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 196 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 16 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 63
Query: 255 KFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+ E ++ S S D TV +W+ P Q C
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE-----EDPDQEEC 95
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 196 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 14 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 61
Query: 255 KFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+ E ++ S S D TV +W+ P Q C
Sbjct: 62 DWASPEYGRIIASASYDKTVKLWE-----EDPDQEEC 93
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 196 NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCV 254
+++ YG H A C S Q I DK WE++ WR H S + +
Sbjct: 16 DVVYDFYGRH-------VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAI 63
Query: 255 KFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQVRC 289
+ E ++ S S D TV +W+ P Q C
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWE-----EDPDQEEC 95
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|X Chain X, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Y Chain Y, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OEZ|Z Chain Z, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase
pdb|1OZT|M Chain M, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|N Chain N, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|G Chain G, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|H Chain H, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|K Chain K, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|L Chain L, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|I Chain I, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
pdb|1OZT|J Chain J, Crystal Structure Of Apo-H46r Familial Als Mutant Human
Cu, Zn Superoxide Dismutase (Cuznsod) To 2.5a Resolution
Length = 153
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 219
S+ +K+W + L +G HE D TA C S+
Sbjct: 25 SNGPVKVWGSIKGLTEGLHGFRVHEFGDNTAGCTSA 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,196,370
Number of Sequences: 62578
Number of extensions: 651204
Number of successful extensions: 2314
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1406
Number of HSP's gapped (non-prelim): 546
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)