BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18232
(486 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242015536|ref|XP_002428409.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
humanus corporis]
gi|212513021|gb|EEB15671.1| ATP-dependent Clp protease proteolytic subunit, putative [Pediculus
humanus corporis]
Length = 252
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 152/250 (60%), Positives = 167/250 (66%), Gaps = 59/250 (23%)
Query: 19 CPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPI 78
C +F G + K FH PL+P+VIEQTGRGERAYDIYSRLL+ERIICVMG I
Sbjct: 16 CKTLFSKAHQGFIVK-FHSGVKHGVPLIPVVIEQTGRGERAYDIYSRLLKERIICVMGQI 74
Query: 79 DDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQA 138
D LSSVV+AQLLFLQSE+SKKP+HMYINSPGGSVT+GLGIYDTMQY+LPP+ATWCVGQA
Sbjct: 75 HDELSSVVIAQLLFLQSENSKKPVHMYINSPGGSVTAGLGIYDTMQYILPPVATWCVGQA 134
Query: 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198
CSMASLLLAAG GMRH+LPN+RIMIHQPSGGVQ GQA
Sbjct: 135 CSMASLLLAAGASGMRHALPNARIMIHQPSGGVQ---------------------GQA-- 171
Query: 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDIQIQAEEI+ LKKQIN LYVKHT
Sbjct: 172 -----------------------------------TDIQIQAEEILKLKKQINHLYVKHT 196
Query: 259 GLSIEKIGKS 268
GLSIEKI +S
Sbjct: 197 GLSIEKIEQS 206
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 355 CPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
C +F G + K FH PL+P+VIEQTGRGERAYDIYSRLL+ERIICVMG +
Sbjct: 16 CKTLFSKAHQGFIVK-FHSGVKHGVPLIPVVIEQTGRGERAYDIYSRLLKERIICVMGQI 74
>gi|321468091|gb|EFX79078.1| hypothetical protein DAPPUDRAFT_231060 [Daphnia pulex]
Length = 235
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 150/233 (64%), Positives = 161/233 (69%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ FH SA L+ PLVPIVIEQTGRGERAYDIYSRLL+ERIICVMGPI D LSS+VVAQLLF
Sbjct: 15 RLFHASAQLTYPLVPIVIEQTGRGERAYDIYSRLLKERIICVMGPITDDLSSLVVAQLLF 74
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKP+HMYINSPGGSVT+GLGIYDTMQYVLPPIATWCVGQACSMASLLLA+G G
Sbjct: 75 LQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYVLPPIATWCVGQACSMASLLLASGSPG 134
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MR+SLPNSRIMIHQPSGGVQ GQA
Sbjct: 135 MRYSLPNSRIMIHQPSGGVQ---------------------GQA---------------- 157
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDIQIQAEEI+ LKKQIN LY KHTGL + I
Sbjct: 158 ---------------------TDIQIQAEEIMKLKKQINQLYGKHTGLQLSVI 189
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 43/47 (91%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ FH SA L+ PLVPIVIEQTGRGERAYDIYSRLL+ERIICVMGP++
Sbjct: 15 RLFHASAQLTYPLVPIVIEQTGRGERAYDIYSRLLKERIICVMGPIT 61
>gi|115634688|ref|XP_786892.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Strongylocentrotus purpuratus]
Length = 239
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/236 (60%), Positives = 162/236 (68%), Gaps = 58/236 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
++ H+ A L PLVPIVIEQTGRGERAYDIYSRLL+ERIIC+MGP++D++SSVV+AQLLF
Sbjct: 21 RSLHNGAKLHTPLVPIVIEQTGRGERAYDIYSRLLKERIICLMGPVNDTVSSVVIAQLLF 80
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGGSVT+GLGIYD+MQYVLPPIATWCVGQACSM SLLL AG G
Sbjct: 81 LQSESNKKPIHMYINSPGGSVTAGLGIYDSMQYVLPPIATWCVGQACSMGSLLLTAGAPG 140
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIM+HQPSG VGQ
Sbjct: 141 MRHSLPNSRIMVHQPSG---------------------QAVGQ----------------- 162
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
ATDIQIQAEEII LKKQIN LYVKHTG +++ I ++
Sbjct: 163 --------------------ATDIQIQAEEIIKLKKQINKLYVKHTGQTLDVIEQA 198
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ H+ A L PLVPIVIEQTGRGERAYDIYSRLL+ERIIC+MGPV+
Sbjct: 21 RSLHNGAKLHTPLVPIVIEQTGRGERAYDIYSRLLKERIICLMGPVN 67
>gi|156541196|ref|XP_001599209.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Nasonia vitripennis]
Length = 234
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 144/239 (60%), Positives = 160/239 (66%), Gaps = 58/239 (24%)
Query: 27 SLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVV 86
+L L + S T S LVPIV+EQTGRGERAYDIYSRLL+ERIIC+MGPI D +SS+V
Sbjct: 7 NLVQLNSSIKKSCTRSLNLVPIVVEQTGRGERAYDIYSRLLKERIICLMGPITDDISSLV 66
Query: 87 VAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLL 146
VAQLLFLQSESSKKPIH+YINSPGG VT+GLGIYDTMQYVLPP+ATWCVGQACSMASLLL
Sbjct: 67 VAQLLFLQSESSKKPIHLYINSPGGVVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLL 126
Query: 147 AAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAA 206
AAG GMRH+LPN+RIMIHQPSGGVQ GQA
Sbjct: 127 AAGAPGMRHALPNARIMIHQPSGGVQ---------------------GQA---------- 155
Query: 207 GEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQAEEI+ LK QIN LY KHTGL I++I
Sbjct: 156 ---------------------------TDIRIQAEEILKLKGQINALYAKHTGLDIQRI 187
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 363 SLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+L L + S T S LVPIV+EQTGRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 7 NLVQLNSSIKKSCTRSLNLVPIVVEQTGRGERAYDIYSRLLKERIICLMGPIT 59
>gi|307204646|gb|EFN83268.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Harpegnathos saltator]
Length = 237
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 163/243 (67%), Gaps = 61/243 (25%)
Query: 28 LGHLAKTFHHSATLSRPL--VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
L + +T+ H T R L VP+V+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D++SSV
Sbjct: 9 LPSITQTYAHK-TSKRYLNFVPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSV 67
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
V+AQLLFLQSESSK PIHMYINSPGGSVT+GLGIYDTMQYVLPP+ATWCVGQACSMASLL
Sbjct: 68 VIAQLLFLQSESSKNPIHMYINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLL 127
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
LAAG KGMRHSLPN+RIM HQPSGGVQ GQA
Sbjct: 128 LAAGAKGMRHSLPNARIMTHQPSGGVQ---------------------GQA--------- 157
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDIQIQA EI+ LKKQIN LYVKHTG +EKI
Sbjct: 158 ----------------------------TDIQIQALEILKLKKQINELYVKHTGQELEKI 189
Query: 266 GKS 268
S
Sbjct: 190 ESS 192
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 43/54 (79%), Gaps = 3/54 (5%)
Query: 364 LGHLAKTFHHSATLSRPL--VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + +T+ H T R L VP+V+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 9 LPSITQTYAHK-TSKRYLNFVPVVVEQSGRGERAYDIYSRLLKERIICLMGPIT 61
>gi|357629245|gb|EHJ78139.1| hypothetical protein KGM_01435 [Danaus plexippus]
Length = 211
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 156/224 (69%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++PIV+EQTGRGERAYDIYSRLLRERIIC+MGPI+D +SS+VVAQLLFLQSESSKKP+H+
Sbjct: 1 MIPIVVEQTGRGERAYDIYSRLLRERIICLMGPINDEISSLVVAQLLFLQSESSKKPVHL 60
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GLGIYDTMQY+ PP+ATWCVGQACSMASLLLAAG GMRH+LPNSRIMI
Sbjct: 61 YINSPGGNVTAGLGIYDTMQYITPPVATWCVGQACSMASLLLAAGAPGMRHALPNSRIMI 120
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGV+ GQA
Sbjct: 121 HQPSGGVR---------------------GQA---------------------------- 131
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDIQIQAEEI+ LK QIN LYV+HTGL IE+I S
Sbjct: 132 ---------TDIQIQAEEILKLKSQINNLYVRHTGLPIERIQTS 166
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 35/35 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++PIV+EQTGRGERAYDIYSRLLRERIIC+MGP++
Sbjct: 1 MIPIVVEQTGRGERAYDIYSRLLRERIICLMGPIN 35
>gi|91076194|ref|XP_971998.1| PREDICTED: similar to caseinolytic protease, ATP-dependent,
proteolytic subunit homolog [Tribolium castaneum]
gi|270014730|gb|EFA11178.1| hypothetical protein TcasGA2_TC004785 [Tribolium castaneum]
Length = 234
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 139/224 (62%), Positives = 156/224 (69%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGER+YDIYSRLL+ERIIC+MGPI+D +SS++VAQLLFLQSES+ KPIHM
Sbjct: 24 LVPIVIEQTGRGERSYDIYSRLLKERIICLMGPINDPMSSLIVAQLLFLQSESTNKPIHM 83
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY+LPPIATWCVGQA SMASLLLAAG GMRHSLP++RIMI
Sbjct: 84 YINSPGGSVTAGLGIYDTMQYILPPIATWCVGQAASMASLLLAAGSPGMRHSLPHARIMI 143
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 144 HQPSGGAQ---------------------GQA---------------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQAEEI+ LK QIN LYVKHTGL++EKI +S
Sbjct: 155 ---------TDIKIQAEEILKLKSQINNLYVKHTGLALEKIERS 189
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 35/35 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQTGRGER+YDIYSRLL+ERIIC+MGP++
Sbjct: 24 LVPIVIEQTGRGERSYDIYSRLLKERIICLMGPIN 58
>gi|307177704|gb|EFN66732.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Camponotus floridanus]
Length = 234
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/223 (63%), Positives = 152/223 (68%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIV+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D +SS VVAQLLFLQSESSK PIH+
Sbjct: 25 FVPIVVEQSGRGERAYDIYSRLLKERIICLMGPITDDVSSAVVAQLLFLQSESSKNPIHL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPP++TWCVGQACSMASLLLAAG KGMRHSLPN+RIM
Sbjct: 85 YINSPGGSVTAGLGIYDTMQYVLPPVSTWCVGQACSMASLLLAAGTKGMRHSLPNARIMT 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGVQ GQA
Sbjct: 145 HQPSGGVQ---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDIQIQA EII LKKQIN LYVKHTG +EKI K
Sbjct: 156 ---------TDIQIQALEIIKLKKQINELYVKHTGQDLEKIEK 189
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 25 FVPIVVEQSGRGERAYDIYSRLLKERIICLMGPIT 59
>gi|380012458|ref|XP_003690300.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Apis florea]
Length = 236
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 154/223 (69%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D++SSVV+AQLLFLQSE+SK PIHM
Sbjct: 25 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSENSKNPIHM 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPP+ATWCVGQACSMASLLLAAG KGMRHSLPN+RIM
Sbjct: 85 YINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLPNARIMT 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGV GQA
Sbjct: 145 HQPSGGVS---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDIQIQA EI+ LKKQIN LYVKHTGL +EKI +
Sbjct: 156 ---------TDIQIQALEILKLKKQINNLYVKHTGLDLEKIER 189
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 25 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPIT 59
>gi|66515781|ref|XP_392540.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Apis mellifera]
Length = 237
Score = 267 bits (683), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 154/223 (69%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D++SSVV+AQLLFLQSE+SK PIHM
Sbjct: 25 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSENSKNPIHM 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPP+ATWCVGQACSMASLLLAAG KGMRHSLPN+RIM
Sbjct: 85 YINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLPNARIMT 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGV GQA
Sbjct: 145 HQPSGGVS---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDIQIQA EI+ LKKQIN LYVKHTGL +EKI +
Sbjct: 156 ---------TDIQIQALEILKLKKQINNLYVKHTGLDLEKIER 189
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 25 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPIT 59
>gi|332016545|gb|EGI57426.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Acromyrmex echinatior]
Length = 224
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/224 (61%), Positives = 155/224 (69%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIV+EQ+GRGERAYDIYSRLL+ERIIC+MGP+ D ++S V+AQLLFLQSESSK PIH+
Sbjct: 14 FVPIVVEQSGRGERAYDIYSRLLKERIICLMGPVTDVVASAVIAQLLFLQSESSKNPIHL 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPPI+TWCVGQACSMASLLLAAG KGMRHSLPN+RIMI
Sbjct: 74 YINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSMASLLLAAGTKGMRHSLPNARIMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGVQ GQA
Sbjct: 134 HQPSGGVQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDIQIQA EI+ LK+QIN LYVKHTG ++E+I KS
Sbjct: 145 ---------TDIQIQATEILKLKQQINELYVKHTGQNLEEIAKS 179
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+GRGERAYDIYSRLL+ERIIC+MGPV+
Sbjct: 14 FVPIVVEQSGRGERAYDIYSRLLKERIICLMGPVT 48
>gi|47216266|emb|CAG05962.1| unnamed protein product [Tetraodon nigroviridis]
Length = 249
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 138/243 (56%), Positives = 159/243 (65%), Gaps = 59/243 (24%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
F GL+L H ++ HHS PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDS+
Sbjct: 9 FGGLTLKH-SRLIHHSPVWRSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSV 67
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+S+++AQLLFLQSES+ KPIHMYINSPGG VT+GL IYDTMQY+L PI+TWCVGQA SM
Sbjct: 68 ASLIIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMG 127
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASL 202
SLLLAAG GMRHSLPN+R+MIHQPSGG + GQA
Sbjct: 128 SLLLAAGTAGMRHSLPNARVMIHQPSGGAR---------------------GQA------ 160
Query: 203 LLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI IQAEEI+ LK+QIN +Y KHTG +
Sbjct: 161 -------------------------------TDIAIQAEEILKLKRQINTIYAKHTGQPL 189
Query: 263 EKI 265
E I
Sbjct: 190 ETI 192
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 46/57 (80%), Gaps = 1/57 (1%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
F GL+L H ++ HHS PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 9 FGGLTLKH-SRLIHHSPVWRSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 64
>gi|348517837|ref|XP_003446439.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Oreochromis niloticus]
Length = 270
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 138/240 (57%), Positives = 160/240 (66%), Gaps = 59/240 (24%)
Query: 26 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
L+L H +++ HHS+ PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDS++S+
Sbjct: 12 LTLKH-SRSIHHSSICRTPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSIASL 70
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
V+AQLLFLQSES+ KPIHMYINSPGG VT+GL IYDTMQY+L PI+TWCVGQA SM SLL
Sbjct: 71 VIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMGSLL 130
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
LAAG GMRHSLPN+RIM+HQPSGG + GQA
Sbjct: 131 LAAGTTGMRHSLPNARIMVHQPSGGAR---------------------GQA--------- 160
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LK+QIN +Y KHTG S+E I
Sbjct: 161 ----------------------------TDIAIQAEEILKLKRQINNIYAKHTGQSLETI 192
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 362 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+L H +++ HHS+ PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 12 LTLKH-SRSIHHSSICRTPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 64
>gi|410901755|ref|XP_003964361.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Takifugu rubripes]
Length = 270
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 138/241 (57%), Positives = 158/241 (65%), Gaps = 59/241 (24%)
Query: 25 GLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSS 84
GL+L H ++ HHS PLVPIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S
Sbjct: 15 GLTLKH-SRLIHHSPVWRSPLVPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVAS 73
Query: 85 VVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASL 144
+V+AQLLFLQSES+ KPIHMYINSPGG VT+GL IYDTMQY+L PI+TWCVGQA SM SL
Sbjct: 74 LVIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMGSL 133
Query: 145 LLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLL 204
LLAAG GMRHSLPN+R+MIHQPSGG + GQA
Sbjct: 134 LLAAGTAGMRHSLPNARVMIHQPSGGAR---------------------GQA-------- 164
Query: 205 AAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEK 264
TDI IQAEEI+ LK+QIN +Y KHTG +E
Sbjct: 165 -----------------------------TDIAIQAEEILKLKRQINNIYAKHTGQPLET 195
Query: 265 I 265
I
Sbjct: 196 I 196
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Query: 361 GLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
GL+L H ++ HHS PLVPIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 15 GLTLKH-SRLIHHSPVWRSPLVPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 68
>gi|383848841|ref|XP_003700056.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Megachile rotundata]
Length = 241
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/221 (61%), Positives = 151/221 (68%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VP+V+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D++SSVV+AQLLFLQSESSK PIHM
Sbjct: 26 FVPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSESSKNPIHM 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPP+ATWCVGQACSMASLLLAAG KGMRHSLPN+RIM
Sbjct: 86 YINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLPNARIMT 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGV GQA +
Sbjct: 146 HQPSGGVS---------------------GQATDI------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
QIQA EI+ LKKQIN LYVKHTG+ +EKI
Sbjct: 160 ------------QIQALEILKLKKQINQLYVKHTGMELEKI 188
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 26 FVPVVVEQSGRGERAYDIYSRLLKERIICLMGPIT 60
>gi|332372582|gb|AEE61433.1| unknown [Dendroctonus ponderosae]
Length = 244
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 153/224 (68%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL+ERIIC+MGPI D++SS++VAQLLFLQ+E++ KPIHM
Sbjct: 29 LVPIVVEQTGRGERSYDIYSRLLKERIICLMGPIHDTMSSLIVAQLLFLQAENTNKPIHM 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY PPIATWCVGQACSMASLLLA+G GMRHSLPN+RIMI
Sbjct: 89 YINSPGGSVTAGLGIYDTMQYCAPPIATWCVGQACSMASLLLASGSPGMRHSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDIQIQAEEII LK QIN LYV+HTGL +E I K+
Sbjct: 160 ---------TDIQIQAEEIIKLKNQINQLYVRHTGLELETIEKN 194
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 34/34 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVPIV+EQTGRGER+YDIYSRLL+ERIIC+MGP+
Sbjct: 29 LVPIVVEQTGRGERSYDIYSRLLKERIICLMGPI 62
>gi|350409849|ref|XP_003488865.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Bombus impatiens]
Length = 242
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 152/223 (68%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGPI D++SSVV+AQLLFLQSE+SK PIHM
Sbjct: 26 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPITDNVSSVVIAQLLFLQSENSKNPIHM 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYVLPP+ATWCVGQACSMASLLLAAG KGMRHSLPN+RIM
Sbjct: 86 YINSPGGSVTAGLGIYDTMQYVLPPVATWCVGQACSMASLLLAAGTKGMRHSLPNARIMT 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGGV GQA +
Sbjct: 146 HQPSGGVS---------------------GQATDI------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
QIQA EI+ LKKQIN LYVKHTGL +EKI +
Sbjct: 160 ------------QIQALEILKLKKQINHLYVKHTGLDLEKIER 190
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 26 FIPVVVEQSGRGERAYDIYSRLLKERIICLMGPIT 60
>gi|391342988|ref|XP_003745797.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Metaseiulus occidentalis]
Length = 231
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/233 (58%), Positives = 154/233 (66%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H S P+VPIVIEQTGRGERAYDIYSRLL+ERIIC+MGPI+D ++S+VVAQLLF
Sbjct: 15 RNLHRSVPALNPMVPIVIEQTGRGERAYDIYSRLLKERIICLMGPINDDIASLVVAQLLF 74
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSESSKKPIH+YINSPGGSVT+GLGIYDTMQYVLPPI+TWCVGQACS ASLLLAAGE+G
Sbjct: 75 LQSESSKKPIHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSAASLLLAAGEQG 134
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIM+HQPSGGV GQA
Sbjct: 135 MRHSLPNSRIMVHQPSGGVS---------------------GQATD-------------- 159
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
IQI AEEI+ LKK++N +Y KHT IE I
Sbjct: 160 -----------------------IQIHAEEILYLKKKVNRIYAKHTKQPIEAI 189
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H S P+VPIVIEQTGRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 15 RNLHRSVPALNPMVPIVIEQTGRGERAYDIYSRLLKERIICLMGPIN 61
>gi|66472380|ref|NP_001018520.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Danio rerio]
gi|63102525|gb|AAH95769.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [Danio rerio]
Length = 266
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/241 (56%), Positives = 158/241 (65%), Gaps = 58/241 (24%)
Query: 25 GLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSS 84
G+S ++++ H S+ S PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDS++S
Sbjct: 9 GVSTLRVSRSVHQSSPWSSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSVAS 68
Query: 85 VVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASL 144
+V+AQLLFLQSES+ KPIHMYINSPGG VTSG IYDTMQY+L PI+TWCVGQA SM SL
Sbjct: 69 LVIAQLLFLQSESNNKPIHMYINSPGGVVTSGPAIYDTMQYILNPISTWCVGQAASMGSL 128
Query: 145 LLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLL 204
LLAAG GMRHSLPN+RIM+HQPSGG + GQA
Sbjct: 129 LLAAGTAGMRHSLPNARIMVHQPSGGAR---------------------GQA-------- 159
Query: 205 AAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEK 264
TDI IQAEEI+ LK+QIN +Y KHTG +E
Sbjct: 160 -----------------------------TDIAIQAEEILKLKRQINNIYSKHTGQLLET 190
Query: 265 I 265
I
Sbjct: 191 I 191
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 361 GLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
G+S ++++ H S+ S PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 9 GVSTLRVSRSVHQSSPWSSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 63
>gi|346470813|gb|AEO35251.1| hypothetical protein [Amblyomma maculatum]
Length = 236
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/247 (56%), Positives = 158/247 (63%), Gaps = 65/247 (26%)
Query: 26 LSLGHLAKTFHHSA-------TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPI 78
L LGH+A+ HHS L PLVPIVIEQTGRGERAYDIYSRLL+ERI+CVMGPI
Sbjct: 10 LCLGHIARRHHHSRRSLHSSRPLCLPLVPIVIEQTGRGERAYDIYSRLLKERIVCVMGPI 69
Query: 79 DDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQA 138
D +SS+VVAQLLFLQSES+KKP+HMYINSPGGSVT+GLGI+DTMQY++PPI+TWC+GQA
Sbjct: 70 TDEMSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIFDTMQYIMPPISTWCIGQA 129
Query: 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198
CSMASLLL AG GMR SLPNSRIM+HQPSG VGQA
Sbjct: 130 CSMASLLLCAGTPGMRQSLPNSRIMVHQPSG---------------------QAVGQA-- 166
Query: 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDIQI AEEII LK+ IN +Y KHT
Sbjct: 167 -----------------------------------TDIQIHAEEIIKLKRTINTIYAKHT 191
Query: 259 GLSIEKI 265
+E I
Sbjct: 192 KQPLEVI 198
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 47/61 (77%), Gaps = 7/61 (11%)
Query: 362 LSLGHLAKTFHHSA-------TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L LGH+A+ HHS L PLVPIVIEQTGRGERAYDIYSRLL+ERI+CVMGP+
Sbjct: 10 LCLGHIARRHHHSRRSLHSSRPLCLPLVPIVIEQTGRGERAYDIYSRLLKERIVCVMGPI 69
Query: 415 S 415
+
Sbjct: 70 T 70
>gi|56269518|gb|AAH87510.1| LOC496087 protein, partial [Xenopus laevis]
Length = 243
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/226 (61%), Positives = 149/226 (65%), Gaps = 58/226 (25%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H S + PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF
Sbjct: 18 RNVHCSPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 77
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGGSVT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 78 LQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSG 137
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 138 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 160
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDI IQAEEI+ LKKQIN +Y KHT
Sbjct: 161 ---------------------TDIAIQAEEILKLKKQINEIYAKHT 185
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H S + PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 18 RNVHCSPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 64
>gi|148223587|ref|NP_001088816.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Xenopus laevis]
gi|76779451|gb|AAI06237.1| LOC496087 protein [Xenopus laevis]
Length = 247
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/226 (61%), Positives = 149/226 (65%), Gaps = 58/226 (25%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H S + PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF
Sbjct: 22 RNVHCSPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 81
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGGSVT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 82 LQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSG 141
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 142 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 164
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDI IQAEEI+ LKKQIN +Y KHT
Sbjct: 165 ---------------------TDIAIQAEEILKLKKQINEIYAKHT 189
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 39/47 (82%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H S + PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 22 RNVHCSPPILSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 68
>gi|260821306|ref|XP_002605974.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
gi|229291311|gb|EEN61984.1| hypothetical protein BRAFLDRAFT_92198 [Branchiostoma floridae]
Length = 236
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 160/256 (62%), Gaps = 58/256 (22%)
Query: 13 VQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERII 72
++S+ P LS + F SA RP+VPIV+EQTGRGERAYDIYSRLL+ERII
Sbjct: 2 IRSLTRLPRCLVVLSPAQSCRGFQSSAQTLRPMVPIVVEQTGRGERAYDIYSRLLKERII 61
Query: 73 CVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIAT 132
CVMGPI D +SS+VVAQLLFLQSES+KKP+HMYINSPGGSVT+GLGIYDTMQY+LPP+ T
Sbjct: 62 CVMGPISDEMSSLVVAQLLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYILPPVNT 121
Query: 133 WCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWC 192
WCVGQACSMASLLLAAG G RHSLPNSRIM+HQP G
Sbjct: 122 WCVGQACSMASLLLAAGTPGCRHSLPNSRIMVHQPHG---------------------QA 160
Query: 193 VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQING 252
GQA +DI IQAEEI LK+Q+N
Sbjct: 161 AGQA-------------------------------------SDILIQAEEISKLKQQMNK 183
Query: 253 LYVKHTGLSIEKIGKS 268
LYVKHTG + I +S
Sbjct: 184 LYVKHTGQELSVIEES 199
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 349 VQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERII 408
++S+ P LS + F SA RP+VPIV+EQTGRGERAYDIYSRLL+ERII
Sbjct: 2 IRSLTRLPRCLVVLSPAQSCRGFQSSAQTLRPMVPIVVEQTGRGERAYDIYSRLLKERII 61
Query: 409 CVMGPVS 415
CVMGP+S
Sbjct: 62 CVMGPIS 68
>gi|165971139|gb|AAI58370.1| clpp protein [Xenopus (Silurana) tropicalis]
Length = 228
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 148/226 (65%), Gaps = 58/226 (25%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H + PLVPIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSLSS+VVAQLLF
Sbjct: 3 RNVHRGPPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLF 62
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGGSVT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 63 LQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSG 122
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 123 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 145
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDI IQAEEI+ LKKQIN +Y KHT
Sbjct: 146 ---------------------TDIAIQAEEILKLKKQINEIYAKHT 170
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H + PLVPIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 3 RNVHRGPPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 49
>gi|301622698|ref|XP_002940664.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Xenopus (Silurana) tropicalis]
Length = 247
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/226 (61%), Positives = 148/226 (65%), Gaps = 58/226 (25%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H + PLVPIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSLSS+VVAQLLF
Sbjct: 22 RNVHRGPPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSLVVAQLLF 81
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGGSVT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 82 LQSESNKKPIHMYINSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSG 141
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 142 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 164
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDI IQAEEI+ LKKQIN +Y KHT
Sbjct: 165 ---------------------TDIAIQAEEILKLKKQINEIYAKHT 189
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 38/47 (80%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H + PLVPIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 22 RNVHRGPPVLSPLVPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 68
>gi|91083021|ref|XP_974664.1| PREDICTED: similar to ClpP caseinolytic peptidase, ATP-dependent,
proteolytic subunit homolog (E. coli) [Tribolium
castaneum]
gi|270007650|gb|EFA04098.1| hypothetical protein TcasGA2_TC014333 [Tribolium castaneum]
Length = 258
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 131/223 (58%), Positives = 152/223 (68%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+PIV+EQ+GRG+RAYDIYSRLLRERIIC+MGPI D SSV++AQLLFLQ+ES+ KPIHMY
Sbjct: 39 IPIVVEQSGRGDRAYDIYSRLLRERIICLMGPITDYTSSVIIAQLLFLQAESASKPIHMY 98
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSGLGIYDTMQY+LPP+ATWCVGQACSMASL+LAAG KGMRHSLPNSRIMIH
Sbjct: 99 INSPGGVITSGLGIYDTMQYILPPVATWCVGQACSMASLILAAGAKGMRHSLPNSRIMIH 158
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG GQA
Sbjct: 159 QPSGGAS---------------------GQA----------------------------- 168
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQAEEI+ +KKQIN LYVKHT ++E++ +S
Sbjct: 169 --------TDIKIQAEEILKMKKQINCLYVKHTETALERVEQS 203
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/36 (77%), Positives = 35/36 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+PIV+EQ+GRG+RAYDIYSRLLRERIIC+MGP++ Y
Sbjct: 39 IPIVVEQSGRGDRAYDIYSRLLRERIICLMGPITDY 74
>gi|354479226|ref|XP_003501814.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Cricetulus griseus]
gi|344237637|gb|EGV93740.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Cricetulus griseus]
Length = 272
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 155/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 43/49 (87%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|73987256|ref|XP_854538.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Canis lupus familiaris]
Length = 273
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 155/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ G+Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYGIYAKHTKQSLQVI 216
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|427797853|gb|JAA64378.1| Putative atp-dependent clp protease proteolytic subunit, partial
[Rhipicephalus pulchellus]
Length = 278
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/251 (54%), Positives = 169/251 (67%), Gaps = 16/251 (6%)
Query: 15 SIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 74
+I LCP + G ++ ++ H S +L PL+PIVIEQTGRGERAYDIYSRLL+ERI+CV
Sbjct: 7 AIKLCPSLAAGRTVS-ACRSVHSSRSLCYPLIPIVIEQTGRGERAYDIYSRLLKERIVCV 65
Query: 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWC 134
MGPI D +SS+VVAQLLFLQSES+KKP + S L + + + V+ PI+
Sbjct: 66 MGPISDEMSSLVVAQLLFLQSESNKKPXX--------DIYSRL-LKERIVCVMGPISDEM 116
Query: 135 VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVG 194
+ L + K H + I+ P G V GLGIYDTMQY++PPIATWC+G
Sbjct: 117 SSLVVAQLLFLQSESNKKPVH------MYINSPGGSVTAGLGIYDTMQYIMPPIATWCIG 170
Query: 195 QACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLY 254
QACS ASLLL AG GMR SLPNSRIM+HQPSG GQATDIQI AEEI+ LK+ ING+Y
Sbjct: 171 QACSAASLLLCAGTPGMRQSLPNSRIMVHQPSGHAAGQATDIQIHAEEILKLKRVINGIY 230
Query: 255 VKHTGLSIEKI 265
KHT +E I
Sbjct: 231 AKHTKQPLEAI 241
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 351 SIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
+I LCP + G ++ ++ H S +L PL+PIVIEQTGRGERAYDIYSRLL+ERI+CV
Sbjct: 7 AIKLCPSLAAGRTVS-ACRSVHSSRSLCYPLIPIVIEQTGRGERAYDIYSRLLKERIVCV 65
Query: 411 MGPVS 415
MGP+S
Sbjct: 66 MGPIS 70
>gi|332376543|gb|AEE63411.1| unknown [Dendroctonus ponderosae]
Length = 232
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/224 (59%), Positives = 152/224 (67%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGER+YDIYSRLL+ERIIC+MGPI+D++SS++VAQLLFLQSES+ K IHM
Sbjct: 26 LVPIVIEQTGRGERSYDIYSRLLKERIICLMGPINDAMSSLIVAQLLFLQSESTNKAIHM 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY+LPP+ATWCVGQA SMASLLLA+G GMRHSLPN+RIMI
Sbjct: 86 YINSPGGSVTAGLGIYDTMQYILPPVATWCVGQAASMASLLLASGTPGMRHSLPNARIMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 146 HQPSGGAQ---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQAEEII LK QIN LY +HT +EKI ++
Sbjct: 157 ---------TDIKIQAEEIIKLKNQINALYARHTTQPLEKIERN 191
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 35/35 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQTGRGER+YDIYSRLL+ERIIC+MGP++
Sbjct: 26 LVPIVIEQTGRGERSYDIYSRLLKERIICLMGPIN 60
>gi|301784789|ref|XP_002927807.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 273
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ G+Y KHT S+ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVI 216
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|395512929|ref|XP_003760685.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Sarcophilus harrisii]
Length = 332
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/233 (58%), Positives = 155/233 (66%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
++ H + T +RPL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSL+S+V+AQLLF
Sbjct: 106 RSLHGTPTWARPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLASLVIAQLLF 165
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L P++TWCVGQA SM SLLLAAG G
Sbjct: 166 LQSESNKKPIHMYINSPGGIVTSGLAIYDTMQYILNPVSTWCVGQAASMGSLLLAAGCPG 225
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 226 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 248
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ G+Y KHT ++ I
Sbjct: 249 ---------------------TDIAIQAEEIMKLKKQLYGIYAKHTKQPLDVI 280
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ H + T +RPL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 106 RSLHGTPTWARPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 152
>gi|281339765|gb|EFB15349.1| hypothetical protein PANDA_017639 [Ailuropoda melanoleuca]
Length = 272
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ G+Y KHT S+ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYGIYAKHTKQSLRVI 216
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|332265220|ref|XP_003281626.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Nomascus leucogenys]
Length = 241
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/241 (56%), Positives = 156/241 (64%), Gaps = 58/241 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV 270
TDI IQAEEI+ LKKQ+ +Y KHT S++ IG
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIGPFCF 225
Query: 271 C 271
C
Sbjct: 226 C 226
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|74188717|dbj|BAE28093.1| unnamed protein product [Mus musculus]
Length = 269
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 158/243 (65%), Gaps = 58/243 (23%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
+ +S L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS+
Sbjct: 29 WTAVSCSPLRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSV 88
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+S+V+AQLLFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM
Sbjct: 89 ASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMG 148
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASL 202
SLLLAAG GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 149 SLLLAAGSPGMRHSLPNSRIMIHQPSGGAR---------------------GQA------ 181
Query: 203 LLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI IQAEEI+ LKKQ+ +Y KHT S+
Sbjct: 182 -------------------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSL 210
Query: 263 EKI 265
+ I
Sbjct: 211 QVI 213
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ +S L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 29 WTAVSCSPLRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 85
>gi|8393156|ref|NP_059089.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor [Mus musculus]
gi|5921799|sp|O88696.1|CLPP_MOUSE RecName: Full=Putative ATP-dependent Clp protease proteolytic
subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
Flags: Precursor
gi|3559935|emb|CAA06443.1| ClpP protease [Mus musculus]
gi|4454289|emb|CAA09966.1| ClpP protease [Mus musculus]
gi|12805083|gb|AAH01998.1| Caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
(E. coli) [Mus musculus]
gi|12835038|dbj|BAB23132.1| unnamed protein product [Mus musculus]
gi|74207567|dbj|BAE40033.1| unnamed protein product [Mus musculus]
gi|74217075|dbj|BAE26636.1| unnamed protein product [Mus musculus]
gi|148706268|gb|EDL38215.1| caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog
(E. coli) [Mus musculus]
Length = 272
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/243 (55%), Positives = 158/243 (65%), Gaps = 58/243 (23%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
+ +S L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS+
Sbjct: 32 WTAVSCSPLRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSV 91
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+S+V+AQLLFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM
Sbjct: 92 ASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMG 151
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASL 202
SLLLAAG GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 152 SLLLAAGSPGMRHSLPNSRIMIHQPSGGAR---------------------GQA------ 184
Query: 203 LLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI IQAEEI+ LKKQ+ +Y KHT S+
Sbjct: 185 -------------------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSL 213
Query: 263 EKI 265
+ I
Sbjct: 214 QVI 216
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ +S L ++ H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 32 WTAVSCSPLRRSLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|327264015|ref|XP_003216812.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Anolis carolinensis]
Length = 266
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
+++ H S PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDD ++S+V+AQL
Sbjct: 34 VSRCLHQSPRNHIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDGVASLVIAQL 93
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG+VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 94 LFLQSESNKKPIHMYINSPGGTVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 153
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 154 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 178
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQING+Y KHT ++E I
Sbjct: 179 -----------------------TDIAIQAEEILKLKKQINGIYAKHTKQNLEVI 210
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+++ H S PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 34 VSRCLHQSPRNHIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 82
>gi|189065189|dbj|BAG34912.1| unnamed protein product [Homo sapiens]
Length = 277
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSESSKKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESSKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|417398182|gb|JAA46124.1| Putative atp-dependent clp protease proteolytic subunit
mitochondrial [Desmodus rotundus]
Length = 273
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHVTAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHVTAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|348550684|ref|XP_003461161.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Cavia porcellus]
Length = 272
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LRRSLHATAARTIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LRRSLHATAARTIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|395850953|ref|XP_003798036.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Otolemur garnettii]
Length = 277
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H + + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LPRSLHATPAFALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H + + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LPRSLHATPAFALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|403295988|ref|XP_003938903.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 273
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|383410319|gb|AFH28373.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor [Macaca mulatta]
Length = 277
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|380789473|gb|AFE66612.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor [Macaca mulatta]
Length = 277
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|410950139|ref|XP_003981769.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Felis catus]
Length = 273
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|402903915|ref|XP_003914800.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Papio anubis]
Length = 277
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRSLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|296232651|ref|XP_002761668.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Callithrix jacchus]
Length = 273
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|196010065|ref|XP_002114897.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582280|gb|EDV22353.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 226
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 151/236 (63%), Gaps = 58/236 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+T H + PLVPIVIE+TGRGE+AYDIYSRLL++RI+CVMGP+ D L+S+VVAQLLF
Sbjct: 15 RTLHTTGPRISPLVPIVIEKTGRGEQAYDIYSRLLKDRIVCVMGPVTDDLASLVVAQLLF 74
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQ+ESSK PIHMYINSPGGSVTSGLGIYDTMQYV PPI TWCVGQA SM SLLLAAG+ G
Sbjct: 75 LQAESSKLPIHMYINSPGGSVTSGLGIYDTMQYVEPPIYTWCVGQAASMGSLLLAAGDNG 134
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
RHSLPNSRIMIHQPSG GQA
Sbjct: 135 KRHSLPNSRIMIHQPSG---------------------QAFGQA---------------- 157
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI IQAEEII LKK IN LY KHTG SIE I ++
Sbjct: 158 ---------------------TDIAIQAEEIIKLKKLINDLYKKHTGQSIENIEEA 192
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 40/47 (85%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+T H + PLVPIVIE+TGRGE+AYDIYSRLL++RI+CVMGPV+
Sbjct: 15 RTLHTTGPRISPLVPIVIEKTGRGEQAYDIYSRLLKDRIVCVMGPVT 61
>gi|5174419|ref|NP_006003.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor [Homo sapiens]
gi|3023512|sp|Q16740.1|CLPP_HUMAN RecName: Full=Putative ATP-dependent Clp protease proteolytic
subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
Flags: Precursor
gi|62738031|pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738032|pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738033|pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738034|pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738035|pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738036|pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|62738037|pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
gi|963048|emb|CAA90705.1| CLPP [Homo sapiens]
gi|12804197|gb|AAH02956.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [Homo sapiens]
gi|119589509|gb|EAW69103.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [Homo sapiens]
gi|123998295|gb|ABM86749.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [synthetic construct]
gi|157929068|gb|ABW03819.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [synthetic construct]
Length = 277
Score = 254 bits (648), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|351713501|gb|EHB16420.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Heterocephalus glaber]
Length = 272
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDD+++S+V+AQL
Sbjct: 40 LRRSLHATAVRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDTVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 216
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LRRSLHATAVRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|114051824|ref|NP_001039879.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Bos taurus]
gi|118572228|sp|Q2KHU4.1|CLPP_BOVIN RecName: Full=Putative ATP-dependent Clp protease proteolytic
subunit, mitochondrial; AltName: Full=Endopeptidase Clp;
Flags: Precursor
gi|86826474|gb|AAI12881.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog (E. coli) [Bos taurus]
gi|296485755|tpg|DAA27870.1| TPA: caseinolytic peptidase, ATP-dependent, proteolytic subunit
precursor [Bos taurus]
Length = 272
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 152/233 (65%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLF
Sbjct: 42 RNLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLF 101
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 102 LQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 161
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 162 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 184
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 ---------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 42 RNLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|426229089|ref|XP_004008625.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Ovis aries]
Length = 272
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 153/233 (65%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLF
Sbjct: 42 RSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLF 101
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 102 LQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 161
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 162 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 184
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 ---------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 42 RSLHVTAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|440901057|gb|ELR52057.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Bos grunniens mutus]
Length = 280
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/233 (57%), Positives = 152/233 (65%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLF
Sbjct: 50 RNLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLF 109
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG G
Sbjct: 110 LQSESNKKPIHMYINSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 169
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPNSRIMIHQPSGG + GQA
Sbjct: 170 MRHSLPNSRIMIHQPSGGAR---------------------GQA---------------- 192
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 193 ---------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 224
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 40/47 (85%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 50 RNLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 96
>gi|432871395|ref|XP_004071942.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Oryzias latipes]
Length = 265
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/243 (55%), Positives = 156/243 (64%), Gaps = 59/243 (24%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
F L+L H ++ HS PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDD++
Sbjct: 9 FGCLTLKH-SRCIQHSPAWRSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDTV 67
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+S+V+AQLLFLQSES+ KPIHMYINSPGG VT+GL IYDTMQY+L PI+TWCVGQA SM
Sbjct: 68 ASLVIAQLLFLQSESNNKPIHMYINSPGGVVTAGLAIYDTMQYILNPISTWCVGQAASMG 127
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASL 202
SLLLAAG GMRHSLPN+RIM+HQPSGG + GQA
Sbjct: 128 SLLLAAGTSGMRHSLPNARIMVHQPSGGAR---------------------GQA------ 160
Query: 203 LLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI IQAEEI+ LK+QIN +Y KHT +
Sbjct: 161 -------------------------------TDIAIQAEEILKLKRQINTIYAKHTRQPL 189
Query: 263 EKI 265
E I
Sbjct: 190 ETI 192
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
F L+L H ++ HS PL+PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 9 FGCLTLKH-SRCIQHSPAWRSPLIPIVVEQTGRGERAYDIYSRLLRERIICVMGPID 64
>gi|392342214|ref|XP_001055676.3| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Rattus norvegicus]
gi|392350502|ref|XP_217313.5| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Rattus norvegicus]
Length = 272
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 40 LRSNLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LK+Q+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LRSNLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|431922359|gb|ELK19450.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Pteropus alecto]
Length = 274
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDD ++S+V+AQL
Sbjct: 40 LQRSLHATAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDGVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGMVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L ++ H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRSLHATAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|443730787|gb|ELU16145.1| hypothetical protein CAPTEDRAFT_163852 [Capitella teleta]
Length = 233
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/224 (60%), Positives = 151/224 (67%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIV+EQTGRGER+YDIYSRLL+ERIIC+MGPI+D +SS+VVAQLLFLQSESSKKPIHM
Sbjct: 35 MVPIVVEQTGRGERSYDIYSRLLKERIICLMGPINDHVSSLVVAQLLFLQSESSKKPIHM 94
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GLGIYDTMQYVLPPIATWCVGQA SMASLLL AG GMRHSLPNSRIMI
Sbjct: 95 YINSPGGVVTAGLGIYDTMQYVLPPIATWCVGQASSMASLLLCAGAPGMRHSLPNSRIMI 154
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 155 HQPHGGAQ---------------------GQA---------------------------- 165
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDIQIQA+EI+ LK +IN LYVKH+ S+E I K+
Sbjct: 166 ---------TDIQIQAKEILTLKTKINNLYVKHSLQSLETIEKN 200
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 35/35 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIV+EQTGRGER+YDIYSRLL+ERIIC+MGP++
Sbjct: 35 MVPIVVEQTGRGERSYDIYSRLLKERIICLMGPIN 69
>gi|114674891|ref|XP_512312.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Pan troglodytes]
gi|410224542|gb|JAA09490.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Pan troglodytes]
gi|410267064|gb|JAA21498.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Pan troglodytes]
gi|410337167|gb|JAA37530.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Pan troglodytes]
Length = 277
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRCLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRCLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|397497151|ref|XP_003819379.1| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Pan paniscus]
Length = 277
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRCLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRCLHATAARALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>gi|432102000|gb|ELK29820.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Myotis davidii]
Length = 273
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 152/235 (64%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDD+++S+V+AQL
Sbjct: 40 LQRNLHTTAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDNVASLVIAQL 99
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLL AG
Sbjct: 100 LFLQSESNKKPIHMYINSPGGLVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLTAGT 159
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 160 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 184
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEII LKKQ+ +Y KHT S++ I
Sbjct: 185 -----------------------TDIAIQAEEIIKLKKQLYTIYAKHTKQSLQVI 216
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +A + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 40 LQRNLHTTAARAIPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 88
>gi|170049615|ref|XP_001857723.1| ATP-dependent Clp protease proteolytic subunit [Culex
quinquefasciatus]
gi|167871378|gb|EDS34761.1| ATP-dependent Clp protease proteolytic subunit [Culex
quinquefasciatus]
Length = 225
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 132/226 (58%), Positives = 147/226 (65%), Gaps = 58/226 (25%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
+ H SA+ LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGPI D LSS++VAQLLF
Sbjct: 15 RNLHTSASRLLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLF 74
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSE+ KPIHMYINSPGGSVT+GL IYDTMQYV PP+ATWCVGQACSM SLLLAAG G
Sbjct: 75 LQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPG 134
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MRHSLPN+RIMIHQPSGG Q GQA
Sbjct: 135 MRHSLPNARIMIHQPSGGAQ---------------------GQA---------------- 157
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDIQIQAEEI+ LKKQ+ +Y KHT
Sbjct: 158 ---------------------TDIQIQAEEILKLKKQLTEIYAKHT 182
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ H SA+ LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGP+
Sbjct: 15 RNLHTSASRLLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPI 60
>gi|149028159|gb|EDL83597.1| similar to Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor (Endopeptidase Clp) [Rattus
norvegicus]
Length = 333
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 153/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 101 LRSNLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 160
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 161 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGS 220
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 221 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 245
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LK+Q+ +Y KHT S++ I
Sbjct: 246 -----------------------TDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVI 277
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 41/49 (83%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 101 LRSNLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 149
>gi|118791462|ref|XP_319765.3| AGAP009019-PA [Anopheles gambiae str. PEST]
gi|116117612|gb|EAA14822.3| AGAP009019-PA [Anopheles gambiae str. PEST]
Length = 225
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/238 (56%), Positives = 152/238 (63%), Gaps = 60/238 (25%)
Query: 28 LGHLA--KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
L HLA + H + LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGPI D LSS+
Sbjct: 8 LPHLASVRKLHATNKSFLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSL 67
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
+VAQLLFLQSE+ KPIHMYINSPGGSVT+GL IYDTMQYV PP+ATWCVGQACSM SLL
Sbjct: 68 IVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLL 127
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
LAAG GMRHSLPN+RIMIHQPSGG Q GQA
Sbjct: 128 LAAGAPGMRHSLPNARIMIHQPSGGAQ---------------------GQA--------- 157
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIE 263
TDIQIQAEEI+ LKKQ+ +Y KHT S++
Sbjct: 158 ----------------------------TDIQIQAEEILKLKKQLTEIYGKHTKTSLD 187
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Query: 364 LGHLA--KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L HLA + H + LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGP+
Sbjct: 8 LPHLASVRKLHATNKSFLNLVPIVVEQTGRGERAYDIFSRLLKERIICLMGPI 60
>gi|157124223|ref|XP_001660372.1| endopeptidase clp, putative [Aedes aegypti]
gi|108882807|gb|EAT47032.1| AAEL001797-PA [Aedes aegypti]
Length = 225
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 145/219 (66%), Gaps = 58/219 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGPI D LSS++VAQLLFLQSE+ KPIHM
Sbjct: 27 LVPIVVEQTGRGERAYDIFSRLLKERIICLMGPIHDDLSSLIVAQLLFLQSENGTKPIHM 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQYV PP+ATWCVGQACSM SLLLAAG GMRHSLPN+RIMI
Sbjct: 87 YINSPGGSVTAGLAIYDTMQYVKPPVATWCVGQACSMGSLLLAAGAPGMRHSLPNARIMI 146
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 147 HQPSGGAQ---------------------GQA---------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIE 263
TDIQIQAEEI+ LKKQ+ +Y KHT S++
Sbjct: 158 ---------TDIQIQAEEILKLKKQLTEIYGKHTKTSVD 187
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/34 (85%), Positives = 34/34 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVPIV+EQTGRGERAYDI+SRLL+ERIIC+MGP+
Sbjct: 27 LVPIVVEQTGRGERAYDIFSRLLKERIICLMGPI 60
>gi|427798011|gb|JAA64457.1| Putative atp-dependent clp protease proteolytic subunit, partial
[Rhipicephalus pulchellus]
Length = 263
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/233 (56%), Positives = 151/233 (64%), Gaps = 58/233 (24%)
Query: 33 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
++ H S +L PL+PIVIEQTGRGERAYDIYSRLL+ERI+CVMGPI D +SS+VVAQLLF
Sbjct: 52 RSVHTSRSLCYPLIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPISDEMSSLVVAQLLF 111
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
LQSES+KKP+HMYINSPGGSVT+GLGIYDTMQY++PPIATWC+GQACS ASLLL AG G
Sbjct: 112 LQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYIMPPIATWCIGQACSAASLLLCAGTPG 171
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
MR SLPNSRIM+HQPSG GQA
Sbjct: 172 MRQSLPNSRIMVHQPSG---------------------HAAGQA---------------- 194
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+ I IH AEEI+ LK+ ING+Y KHT +E I
Sbjct: 195 -----TDIQIH----------------AEEILKLKRVINGIYAKHTKQPLEAI 226
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 42/47 (89%)
Query: 369 KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ H S +L PL+PIVIEQTGRGERAYDIYSRLL+ERI+CVMGP+S
Sbjct: 52 RSVHTSRSLCYPLIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPIS 98
>gi|156362486|ref|XP_001625808.1| predicted protein [Nematostella vectensis]
gi|156212658|gb|EDO33708.1| predicted protein [Nematostella vectensis]
Length = 228
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 128/232 (55%), Positives = 152/232 (65%), Gaps = 58/232 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
H++ + R LVP+VIE TGRGERAYDI+SRLL+ERI+CVMGP+ D SS+V+AQLLFLQSE
Sbjct: 19 HTSCVRRFLVPMVIESTGRGERAYDIFSRLLKERIVCVMGPVTDETSSLVIAQLLFLQSE 78
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
SSK PIHMYINSPGG+VTSGLGIYDTMQY+ PPI+TWCVGQACSM SLLLAAG G+RH+
Sbjct: 79 SSKLPIHMYINSPGGTVTSGLGIYDTMQYIQPPISTWCVGQACSMGSLLLAAGSPGLRHA 138
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LP+SRIM+HQP GG GQA
Sbjct: 139 LPHSRIMVHQPHGGAS---------------------GQA-------------------- 157
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI IQAEEI+ LK+ +NG+YVKHTG +E I ++
Sbjct: 158 -----------------TDIAIQAEEILKLKRVLNGIYVKHTGKDMETIEQA 192
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 39/43 (90%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H++ + R LVP+VIE TGRGERAYDI+SRLL+ERI+CVMGPV+
Sbjct: 19 HTSCVRRFLVPMVIESTGRGERAYDIFSRLLKERIVCVMGPVT 61
>gi|345314392|ref|XP_001515048.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like, partial [Ornithorhynchus anatinus]
Length = 161
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/219 (60%), Positives = 144/219 (65%), Gaps = 58/219 (26%)
Query: 47 PIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYI 106
PIV+EQTGRGERAYDIYSRLLRERIICVMGPIDDSL+S+V+AQLLFLQSES+KKPIHMYI
Sbjct: 1 PIVVEQTGRGERAYDIYSRLLRERIICVMGPIDDSLASLVIAQLLFLQSESNKKPIHMYI 60
Query: 107 NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 166
NSPGG VTSGL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIMIHQ
Sbjct: 61 NSPGGVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQ 120
Query: 167 PSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226
PSGG + GQA
Sbjct: 121 PSGGAR---------------------GQA------------------------------ 129
Query: 227 GGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ G+Y KHT ++ I
Sbjct: 130 -------TDIAIQAEEIMKLKKQLYGIYAKHTKQPLDVI 161
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/33 (90%), Positives = 32/33 (96%)
Query: 383 PIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
PIV+EQTGRGERAYDIYSRLLRERIICVMGP+
Sbjct: 1 PIVVEQTGRGERAYDIYSRLLRERIICVMGPID 33
>gi|241696180|ref|XP_002411835.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
gi|215504758|gb|EEC14252.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
gi|442758961|gb|JAA71639.1| Putative atp-dependent clp protease proteolytic subunit [Ixodes
ricinus]
Length = 235
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/236 (55%), Positives = 151/236 (63%), Gaps = 58/236 (24%)
Query: 30 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQ 89
H + H S+ PL+PIVIEQTGRGERAYDIYSRLL+ERI+CVMGPI D LSS+VVAQ
Sbjct: 20 HTPRCIHTSSRRLNPLIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPITDELSSLVVAQ 79
Query: 90 LLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 149
LLFLQSES+KKP+HMYINSPGGSVT+GLGIYDTMQY++PPI+TWC+GQACS SLLL AG
Sbjct: 80 LLFLQSESNKKPVHMYINSPGGSVTAGLGIYDTMQYIMPPISTWCIGQACSAGSLLLCAG 139
Query: 150 EKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209
GMRHSLP+SRIMIHQPSG GQA
Sbjct: 140 TAGMRHSLPHSRIMIHQPSG---------------------QASGQA------------- 165
Query: 210 GMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+ I IH AEEI++LK+ ING+Y KHT +E I
Sbjct: 166 --------TDIQIH----------------AEEILHLKRVINGMYAKHTKQPLETI 197
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 41/50 (82%)
Query: 366 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + H S+ PL+PIVIEQTGRGERAYDIYSRLL+ERI+CVMGP++
Sbjct: 20 HTPRCIHTSSRRLNPLIPIVIEQTGRGERAYDIYSRLLKERIVCVMGPIT 69
>gi|339253354|ref|XP_003371900.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella
spiralis]
gi|316967772|gb|EFV52155.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Trichinella
spiralis]
Length = 892
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/231 (54%), Positives = 145/231 (62%), Gaps = 60/231 (25%)
Query: 30 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQ 89
+ + FH P +PIV+EQTGRGERAYDI+SRLL ERIICVMGPI D LSS+V+AQ
Sbjct: 5 YFTRAFHACTLNKVPYIPIVVEQTGRGERAYDIFSRLLEERIICVMGPITDELSSLVIAQ 64
Query: 90 LLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPP--IATWCVGQACSMASLLLA 147
LLFLQS+S KP+HMYINSPGGSVT+GLGIYDTMQY+ P IATWC+GQACSMASLLLA
Sbjct: 65 LLFLQSKSLTKPVHMYINSPGGSVTAGLGIYDTMQYIKPRILIATWCIGQACSMASLLLA 124
Query: 148 AGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 207
+G +G R+ LPN+R+MIHQPSG VGQA
Sbjct: 125 SGTEGYRNCLPNARVMIHQPSGQA---------------------VGQA----------- 152
Query: 208 EKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
TDI IQAEEII LK+QIN LYVKHT
Sbjct: 153 --------------------------TDIMIQAEEIIKLKRQINKLYVKHT 177
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 366 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ + FH P +PIV+EQTGRGERAYDI+SRLL ERIICVMGP++
Sbjct: 5 YFTRAFHACTLNKVPYIPIVVEQTGRGERAYDIFSRLLEERIICVMGPIT 54
>gi|355703037|gb|EHH29528.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Macaca mulatta]
Length = 277
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 156/271 (57%), Gaps = 70/271 (25%)
Query: 4 KTTFCVYLEVQSIILCPFIFQ---------GLSLGHLAKTFHHSATLSRPLVPIVIEQTG 54
+ C Y + + PF Q GL+L ++ H +A + P G
Sbjct: 11 RVAACRYPALGPRLAAPFPAQRPPQRTPQNGLAL---QRSLHATAARALPSSHRXXXXXG 67
Query: 55 RGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT 114
RGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLFLQSES+KKPIHMYINSPGG VT
Sbjct: 68 RGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT 127
Query: 115 SGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVG 174
+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIMIHQPSGG +
Sbjct: 128 AGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGAR-- 185
Query: 175 LGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQAT 234
GQA T
Sbjct: 186 -------------------GQA-------------------------------------T 189
Query: 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
DI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 190 DIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 340 KTTFCVYLEVQSIILCPFIFQ---------GLSLGHLAKTFHHSATLSRPLVPIVIEQTG 390
+ C Y + + PF Q GL+L ++ H +A + P G
Sbjct: 11 RVAACRYPALGPRLAAPFPAQRPPQRTPQNGLAL---QRSLHATAARALPSSHRXXXXXG 67
Query: 391 RGERAYDIYSRLLRERIICVMGPVS 415
RGERAYDIYSRLLRERI+CVMGP+
Sbjct: 68 RGERAYDIYSRLLRERIVCVMGPID 92
>gi|198461900|ref|XP_001352265.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
gi|198142480|gb|EAL29303.2| GA18618 [Drosophila pseudoobscura pseudoobscura]
Length = 253
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 123/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH S E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTSIYVKHAKNSYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|195146760|ref|XP_002014352.1| GL19149 [Drosophila persimilis]
gi|194106305|gb|EDW28348.1| GL19149 [Drosophila persimilis]
Length = 253
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 123/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH S E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTSIYVKHAKNSYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|194761774|ref|XP_001963100.1| GF15771 [Drosophila ananassae]
gi|190616797|gb|EDV32321.1| GF15771 [Drosophila ananassae]
Length = 252
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH S +++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTSIYVKHAKNSYDEM 191
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|349804201|gb|AEQ17573.1| putative clpp protein [Hymenochirus curtipes]
Length = 194
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/123 (88%), Positives = 115/123 (93%)
Query: 47 PIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYI 106
PIV+EQTGRGE AYDIYSRLLRERIICVMGPIDDSLSS+V+AQLLFLQSES+KKPIHMYI
Sbjct: 1 PIVVEQTGRGESAYDIYSRLLRERIICVMGPIDDSLSSLVIAQLLFLQSESNKKPIHMYI 60
Query: 107 NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 166
NSPGGSVT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIMIHQ
Sbjct: 61 NSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIHQ 120
Query: 167 PSG 169
PSG
Sbjct: 121 PSG 123
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 73/95 (76%), Gaps = 6/95 (6%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIMIH
Sbjct: 60 INSPGGSVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSSGMRHSLPNSRIMIH 119
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
QPSG TDI IQAEEI+ LKKQIN +Y KHT
Sbjct: 120 QPSG------TDIAIQAEEILKLKKQINEIYAKHT 148
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/33 (87%), Positives = 31/33 (93%)
Query: 383 PIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
PIV+EQTGRGE AYDIYSRLLRERIICVMGP+
Sbjct: 1 PIVVEQTGRGESAYDIYSRLLRERIICVMGPID 33
>gi|195434156|ref|XP_002065069.1| GK15263 [Drosophila willistoni]
gi|194161154|gb|EDW76055.1| GK15263 [Drosophila willistoni]
Length = 255
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH S +++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTAIYVKHAKNSYDEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|195473623|ref|XP_002089092.1| GE18928 [Drosophila yakuba]
gi|194175193|gb|EDW88804.1| GE18928 [Drosophila yakuba]
Length = 253
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 127/261 (48%), Positives = 157/261 (60%), Gaps = 59/261 (22%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI-GKSTVCFYVLHDPYICFW 283
TDI I AEEII +K+Q+ +YVKH + E++ G+ ++ +
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMCGRMERDHFMTPEEAKVLG 210
Query: 284 INGLYVKHTGLSIEKIGKSTN 304
I ++H ++ + G +T+
Sbjct: 211 IIDHVLEHPPETVSETGPATD 231
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|20129427|ref|NP_609388.1| CG5045, isoform A [Drosophila melanogaster]
gi|442627236|ref|NP_001260332.1| CG5045, isoform B [Drosophila melanogaster]
gi|7297671|gb|AAF52923.1| CG5045, isoform A [Drosophila melanogaster]
gi|21428864|gb|AAM50151.1| GH10833p [Drosophila melanogaster]
gi|220944040|gb|ACL84563.1| CG5045-PA [synthetic construct]
gi|220954028|gb|ACL89557.1| CG5045-PA [synthetic construct]
gi|223966793|emb|CAR93133.1| CG5045-PA [Drosophila melanogaster]
gi|440213650|gb|AGB92867.1| CG5045, isoform B [Drosophila melanogaster]
Length = 253
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|194859835|ref|XP_001969460.1| GG10114 [Drosophila erecta]
gi|190661327|gb|EDV58519.1| GG10114 [Drosophila erecta]
Length = 253
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|195339773|ref|XP_002036491.1| GM18225 [Drosophila sechellia]
gi|116811667|emb|CAL26000.1| CG5045 [Drosophila simulans]
gi|194130371|gb|EDW52414.1| GM18225 [Drosophila sechellia]
Length = 253
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|195578155|ref|XP_002078931.1| GD23683 [Drosophila simulans]
gi|194190940|gb|EDX04516.1| GD23683 [Drosophila simulans]
Length = 253
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|116811645|emb|CAL25989.1| CG5045 [Drosophila melanogaster]
gi|116811649|emb|CAL25991.1| CG5045 [Drosophila melanogaster]
gi|116811651|emb|CAL25992.1| CG5045 [Drosophila melanogaster]
gi|116811653|emb|CAL25993.1| CG5045 [Drosophila melanogaster]
gi|116811655|emb|CAL25994.1| CG5045 [Drosophila melanogaster]
gi|116811657|emb|CAL25995.1| CG5045 [Drosophila melanogaster]
gi|116811659|emb|CAL25996.1| CG5045 [Drosophila melanogaster]
gi|116811661|emb|CAL25997.1| CG5045 [Drosophila melanogaster]
gi|116811663|emb|CAL25998.1| CG5045 [Drosophila melanogaster]
gi|116811665|emb|CAL25999.1| CG5045 [Drosophila melanogaster]
gi|223966785|emb|CAR93129.1| CG5045-PA [Drosophila melanogaster]
gi|223966787|emb|CAR93130.1| CG5045-PA [Drosophila melanogaster]
gi|223966789|emb|CAR93131.1| CG5045-PA [Drosophila melanogaster]
gi|223966791|emb|CAR93132.1| CG5045-PA [Drosophila melanogaster]
gi|223966795|emb|CAR93134.1| CG5045-PA [Drosophila melanogaster]
gi|223966797|emb|CAR93135.1| CG5045-PA [Drosophila melanogaster]
gi|223966799|emb|CAR93136.1| CG5045-PA [Drosophila melanogaster]
gi|223966801|emb|CAR93137.1| CG5045-PA [Drosophila melanogaster]
gi|223966803|emb|CAR93138.1| CG5045-PA [Drosophila melanogaster]
Length = 253
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|116811647|emb|CAL25990.1| CG5045 [Drosophila melanogaster]
Length = 253
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 122/221 (55%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH + E++
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKHAKNTYEEM 191
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|225714260|gb|ACO12976.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 222
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/232 (53%), Positives = 149/232 (64%), Gaps = 59/232 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
+ ++SR LVPIV+EQTGRGER+YDIYSRLL++RIIC+MG +DD +S ++VAQLLFLQ+E
Sbjct: 18 EARSMSR-LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAE 76
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
S KKPIHMYINSPGGSVT+GL IYDTMQY+ PPIATWCVGQACSM SLLL AG KGMRHS
Sbjct: 77 SGKKPIHMYINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHS 136
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPNSRIM+HQPSG GQA
Sbjct: 137 LPNSRIMVHQPSG---------------------QSHGQASD------------------ 157
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+Q QA +I +NL+ ++N +YVKHTG ++ + KS
Sbjct: 158 ------------IQIQAQEI-------LNLRARLNNIYVKHTGQPLDIVEKS 190
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%), Gaps = 1/43 (2%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ ++SR LVPIV+EQTGRGER+YDIYSRLL++RIIC+MG V
Sbjct: 18 EARSMSR-LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVD 59
>gi|195051114|ref|XP_001993036.1| GH13604 [Drosophila grimshawi]
gi|193900095|gb|EDV98961.1| GH13604 [Drosophila grimshawi]
Length = 255
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 137/213 (64%), Gaps = 58/213 (27%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
TDI I AEEII +K+Q+ +YVKH
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKH 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|355755362|gb|EHH59109.1| Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Macaca fascicularis]
Length = 238
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 123/212 (58%), Positives = 137/212 (64%), Gaps = 58/212 (27%)
Query: 54 GRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSV 113
GRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLFLQSES+KKPIHMYINSPGG V
Sbjct: 28 GRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVV 87
Query: 114 TSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQV 173
T+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIMIHQPSGG +
Sbjct: 88 TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGAR- 146
Query: 174 GLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQA 233
GQA
Sbjct: 147 --------------------GQA------------------------------------- 149
Query: 234 TDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 150 TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 181
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 25/26 (96%)
Query: 390 GRGERAYDIYSRLLRERIICVMGPVS 415
GRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 28 GRGERAYDIYSRLLRERIVCVMGPID 53
>gi|195384926|ref|XP_002051163.1| GJ13731 [Drosophila virilis]
gi|194147620|gb|EDW63318.1| GJ13731 [Drosophila virilis]
Length = 254
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/213 (56%), Positives = 137/213 (64%), Gaps = 58/213 (27%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMI
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 149 HQPSGGAQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
TDI I AEEII +K+Q+ +YVKH
Sbjct: 160 ---------TDILIHAEEIIKIKRQLTNIYVKH 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 29 LIPMVVEQTGRGERAYDIFSRLLKERIICLMGNIT 63
>gi|225713510|gb|ACO12601.1| ATP-dependent Clp protease proteolytic subunit, mitochondrial
precursor [Lepeophtheirus salmonis]
Length = 222
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/224 (54%), Positives = 144/224 (64%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RIIC+MG +DD +S ++VAQLLFLQ+ES KKPIHM
Sbjct: 25 LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVDDVISGLMVAQLLFLQAESGKKPIHM 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQY+ PPIATWCVGQACSM SLLL AG KGMRHSLPNSRIM+
Sbjct: 85 YINSPGGSVTAGLAIYDTMQYIQPPIATWCVGQACSMGSLLLTAGTKGMRHSLPNSRIMV 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSG GQA
Sbjct: 145 HQPSG---------------------QSHGQASD-------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+Q QA +I +NL+ ++N +YVKHTG ++ + KS
Sbjct: 158 ----IQIQAQEI-------LNLRARLNNIYVKHTGQPLDIVEKS 190
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RIIC+MG V
Sbjct: 25 LVPIVVEQTGRGERSYDIYSRLLKDRIICLMGQVD 59
>gi|291236428|ref|XP_002738143.1| PREDICTED: caseinolytic peptidase, ATP-dependent, proteolytic
subunit-like [Saccoglossus kowalevskii]
Length = 231
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 143/233 (61%), Gaps = 58/233 (24%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H+A + P + GRGERAYDIYSRLL+ERIIC+MGPI D LSS+VVAQLLFLQS
Sbjct: 24 RHTAEVDVPTYYLSAYFAGRGERAYDIYSRLLKERIICLMGPITDDLSSLVVAQLLFLQS 83
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
ES+KKPIHMYINSPGGSVT+GLGIYDTMQYVLPPI+TWCVGQACSMASLLL AG GMR+
Sbjct: 84 ESNKKPIHMYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQACSMASLLLCAGFPGMRY 143
Query: 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 215
SLPNSRIM+HQPSG GQA
Sbjct: 144 SLPNSRIMVHQPSGQAH---------------------GQATD----------------- 165
Query: 216 PNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+Q QA EEI+ +K QIN LYVKHT ++ I +
Sbjct: 166 -------------IQIQA-------EEILKMKNQINNLYVKHTKQPLDFIAAA 198
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+A + P + GRGERAYDIYSRLL+ERIIC+MGP++
Sbjct: 24 RHTAEVDVPTYYLSAYFAGRGERAYDIYSRLLKERIICLMGPIT 67
>gi|195118808|ref|XP_002003928.1| GI20379 [Drosophila mojavensis]
gi|193914503|gb|EDW13370.1| GI20379 [Drosophila mojavensis]
Length = 223
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 120/218 (55%), Positives = 138/218 (63%), Gaps = 58/218 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQTGRGERAYDI+SRLL+ERIIC+MG I D +SS VVAQLLFLQSE+ KPIH+YIN
Sbjct: 1 MVVEQTGRGERAYDIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+GL IYDTMQYV PPIATWCVGQACSM SLLLAAG GMR+SLPN+RIMIHQP
Sbjct: 61 SPGGVVTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG Q GQA
Sbjct: 121 SGGAQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEEII +K+Q+ +YVKH S +++
Sbjct: 129 ------TDILIHAEEIIKIKRQLTNIYVKHAKNSYDEM 160
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 31/32 (96%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQTGRGERAYDI+SRLL+ERIIC+MG ++
Sbjct: 1 MVVEQTGRGERAYDIFSRLLKERIICLMGNIT 32
>gi|92117752|ref|YP_577481.1| endopeptidase Clp [Nitrobacter hamburgensis X14]
gi|116243151|sp|Q1QL76.1|CLPP_NITHX RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|91800646|gb|ABE63021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
hamburgensis X14]
Length = 211
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D++S +VVAQLLFL++++ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDNMSMLVVAQLLFLEADNPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP+AT C GQA SM SLLLAAGEK MRH+LPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRHALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKAI 173
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|209885039|ref|YP_002288896.1| Clp protease [Oligotropha carboxidovorans OM5]
gi|337741329|ref|YP_004633057.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oligotropha
carboxidovorans OM5]
gi|386030345|ref|YP_005951120.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oligotropha
carboxidovorans OM4]
gi|226706464|sp|B6JGU7.1|CLPP_OLICO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|209873235|gb|ACI93031.1| Clp protease [Oligotropha carboxidovorans OM5]
gi|336095413|gb|AEI03239.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oligotropha
carboxidovorans OM4]
gi|336098993|gb|AEI06816.1| ATP-dependent Clp protease proteolytic subunit ClpP [Oligotropha
carboxidovorans OM5]
Length = 210
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG S + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQSYQAI 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|85716433|ref|ZP_01047405.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
gi|85696790|gb|EAQ34676.1| peptidase S14, ClpP [Nitrobacter sp. Nb-311A]
Length = 212
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D++S +VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDTMSMLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP+AT C GQA SM SLLLAAGEK MRH+LPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRHALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI++LKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILSLKKRLNEIYVKHTGQTYQAI 173
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|353327928|ref|ZP_08970255.1| ATP-dependent Clp protease proteolytic subunit [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 213
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 142/221 (64%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K IHM
Sbjct: 8 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDIHM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG KG RHSLP+SRIMI
Sbjct: 68 YINSPGGVVTAGLSIYDTMQYISPNVSTLCIGQAASMGSLLLAAGAKGKRHSLPHSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 128 HQPSGGYQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+EI+ +KK++N +Y KHTG S++KI
Sbjct: 139 ---------TDIEIHAKEILRIKKKLNQIYEKHTGHSLKKI 170
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 8 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIE 42
>gi|299135043|ref|ZP_07028234.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
1NLS2]
gi|298590020|gb|EFI50224.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Afipia sp.
1NLS2]
Length = 210
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQDYKTI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|27380055|ref|NP_771584.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
japonicum USDA 110]
gi|67460543|sp|Q89KG1.1|CLPP2_BRAJA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|27353209|dbj|BAC50209.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium
japonicum USDA 110]
Length = 211
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKTI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|421598923|ref|ZP_16042241.1| endopeptidase Clp [Bradyrhizobium sp. CCGE-LA001]
gi|404268968|gb|EJZ33330.1| endopeptidase Clp [Bradyrhizobium sp. CCGE-LA001]
Length = 211
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKTI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|384218431|ref|YP_005609597.1| ATP-dependent Clp protease, proteolytic subunit [Bradyrhizobium
japonicum USDA 6]
gi|354957330|dbj|BAL10009.1| ATP-dependent Clp protease, proteolytic subunit [Bradyrhizobium
japonicum USDA 6]
Length = 210
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKTI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|198433849|ref|XP_002124509.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 234
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 150/249 (60%), Gaps = 60/249 (24%)
Query: 32 AKTFHHSATLSRPL-VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
++ FH S +PL VP VIEQTGRGER YDIYSRLL+ERI+C+M P+DD +S ++VAQL
Sbjct: 23 SRCFHISKNNLQPLGVPFVIEQTGRGERTYDIYSRLLKERIVCLMAPVDDFVSGLIVAQL 82
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES +KPI+MYIN+PGG+VTSGL IYDTMQ + P++TW VGQA SM SLLLAAGE
Sbjct: 83 LFLQSESPQKPINMYINTPGGTVTSGLAIYDTMQLIKCPVSTWVVGQASSMGSLLLAAGE 142
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMR++LPNSRIM+HQP GG GQA
Sbjct: 143 PGMRNALPNSRIMVHQPLGGAS---------------------GQA-------------- 167
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV 270
+DI IQA EI +K+++N LYV+HTG E I K+ +
Sbjct: 168 -----------------------SDIVIQANEIKKVKEKLNKLYVQHTGQEYEVIEKA-L 203
Query: 271 CFYVLHDPY 279
DPY
Sbjct: 204 DRDNFMDPY 212
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 368 AKTFHHSATLSRPL-VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
++ FH S +PL VP VIEQTGRGER YDIYSRLL+ERI+C+M PV +
Sbjct: 23 SRCFHISKNNLQPLGVPFVIEQTGRGERTYDIYSRLLKERIVCLMAPVDDF 73
>gi|338974245|ref|ZP_08629607.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobiaceae
bacterium SG-6C]
gi|338232972|gb|EGP08100.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobiaceae
bacterium SG-6C]
Length = 202
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 136/215 (63%), Gaps = 58/215 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S ++VAQLLFL++E+ KK I M
Sbjct: 3 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSVLIVAQLLFLEAENPKKEISM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPNSRIM+
Sbjct: 63 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
TDI + A+EI+NLKK++N +YVKHTG
Sbjct: 134 ---------TDIMLHAQEILNLKKRLNEIYVKHTG 159
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 3 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 37
>gi|414166615|ref|ZP_11422847.1| ATP-dependent Clp protease proteolytic subunit [Afipia
clevelandensis ATCC 49720]
gi|410892459|gb|EKS40251.1| ATP-dependent Clp protease proteolytic subunit [Afipia
clevelandensis ATCC 49720]
Length = 210
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 136/215 (63%), Gaps = 58/215 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S ++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSVLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
TDI + A+EI+NLKK++N +YVKHTG
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTG 167
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|414162390|ref|ZP_11418637.1| ATP-dependent Clp protease proteolytic subunit [Afipia felis ATCC
53690]
gi|410880170|gb|EKS28010.1| ATP-dependent Clp protease proteolytic subunit [Afipia felis ATCC
53690]
Length = 210
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMATLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAGEK MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQDYKTI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|75676090|ref|YP_318511.1| peptidase S14, ClpP [Nitrobacter winogradskyi Nb-255]
gi|90101410|sp|Q3SRD2.1|CLPP_NITWN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|74420960|gb|ABA05159.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrobacter
winogradskyi Nb-255]
Length = 212
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V G ++D++S +VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGGVEDNMSMLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP+AT C GQA SM SLLLAAGEK MRH+LPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVATLCTGQAASMGSLLLAAGEKDMRHALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI++LKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILSLKKRLNEIYVKHTGQTYQAI 173
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V G V
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGGVE 45
>gi|402497009|ref|YP_006556269.1| protease subunit of ATP-dependent Clp protease [Wolbachia
endosymbiont of Onchocerca ochengi]
gi|398650282|emb|CCF78452.1| protease subunit of ATP-dependent Clp protease [Wolbachia
endosymbiont of Onchocerca ochengi]
Length = 199
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/221 (52%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIVIEQT RGERAYDIYSRL++ERII V GPI+DS++SV+VAQLLFL+SE+ K I+M
Sbjct: 3 LIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPIEDSMASVIVAQLLFLESENPDKDIYM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG KG R+SLP+SRIMI
Sbjct: 63 YINSPGGIVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGYQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A EI+ +KK++N +Y KHTG S++KI
Sbjct: 134 ---------TDIEIHANEILRVKKKLNQIYEKHTGNSLKKI 165
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIVIEQT RGERAYDIYSRL++ERII V GP+
Sbjct: 3 LIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPIE 37
>gi|449663896|ref|XP_002163612.2| PREDICTED: putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial-like [Hydra magnipapillata]
Length = 170
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 139/218 (63%), Gaps = 59/218 (27%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+V I+I + GR ERAYDIYSRLL+ERI+C+ G IDD++SSVVVAQLLFLQSES KKPIHM
Sbjct: 1 MVRILIHE-GRTERAYDIYSRLLKERIVCLFGGIDDNVSSVVVAQLLFLQSESRKKPIHM 59
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ PPIATWCVGQACSM SLLLA+G KG+RH+LP+SRIM+
Sbjct: 60 YINSPGGVVTAGLAIYDTMQFIEPPIATWCVGQACSMGSLLLASGSKGLRHALPHSRIML 119
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 120 HQPHGGVQ---------------------GQA---------------------------- 130
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI IQA+EI++LK +N +Y HTG +
Sbjct: 131 ---------TDIAIQAKEILHLKTMLNKIYSIHTGKDV 159
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V I+I + GR ERAYDIYSRLL+ERI+C+ G +
Sbjct: 1 MVRILIHE-GRTERAYDIYSRLLKERIVCLFGGID 34
>gi|57238933|ref|YP_180069.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58578866|ref|YP_197078.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|67460160|sp|Q5HBX5.1|CLPP_EHRRW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|57161012|emb|CAH57918.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58417492|emb|CAI26696.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
ruminantium str. Welgevonden]
Length = 198
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/221 (52%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GPI+D ++S+VVAQL+FL++E+ +K I M
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDISM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV P IAT C+GQA SM SLLLAAGEKGMR +LPNSRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+EI+N+K ++N +YVKHTG + ++
Sbjct: 134 ---------TDIEIHAKEILNIKSRLNYIYVKHTGRELSEV 165
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + GP+
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIE 37
>gi|414173794|ref|ZP_11428421.1| ATP-dependent Clp protease proteolytic subunit [Afipia broomeae
ATCC 49717]
gi|410890428|gb|EKS38227.1| ATP-dependent Clp protease proteolytic subunit [Afipia broomeae
ATCC 49717]
Length = 210
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/215 (52%), Positives = 135/215 (62%), Gaps = 58/215 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSVLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG K MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
TDI + A+EI+NLKK++N +YVKHTG
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTG 167
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|302817596|ref|XP_002990473.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
gi|300141641|gb|EFJ08350.1| hypothetical protein SELMODRAFT_131898 [Selaginella moellendorffii]
Length = 253
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLL+L+SE+ KPIH+
Sbjct: 29 LIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESENPLKPIHL 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T CVGQA SM SLLLAAGE G R SLPN+R+M+
Sbjct: 89 YINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRSLPNARVMV 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 149 HQPSGGAS---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI IQA EI++++ ++N LY KHTG SIEKI +S
Sbjct: 160 ---------SDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQS 194
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 29 LIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIA 63
>gi|300681014|sp|A8WPG6.2|CLPP1_CAEBR RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
mitochondrial; Flags: Precursor
Length = 219
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 116/135 (85%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+T +R +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES
Sbjct: 16 SSTQARVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSES 75
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
SKKPIHMYINSPGGSVT+GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +L
Sbjct: 76 SKKPIHMYINSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSAL 135
Query: 158 PNSRIMIHQPSGGVQ 172
PN+RIM+HQPSGG Q
Sbjct: 136 PNARIMVHQPSGGAQ 150
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/131 (53%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +LPN+RIM+H
Sbjct: 84 INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 143
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS-TVCFYVLHDPYICF 282
QPSGG QG +DI I+AEEI LKK++N +YV HTG+S ++I ++ ++ + F
Sbjct: 144 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERTLDRDRFMSAQEALKF 203
Query: 283 WINGLYVKHTG 293
+ KHTG
Sbjct: 204 GLVDKIEKHTG 214
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
S+T +R +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 16 SSTQARVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 59
>gi|302804055|ref|XP_002983780.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
gi|300148617|gb|EFJ15276.1| hypothetical protein SELMODRAFT_48156 [Selaginella moellendorffii]
Length = 206
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLL+L+SE+ KPIH+
Sbjct: 6 LIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLYLESENPLKPIHL 65
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T CVGQA SM SLLLAAGE G R SLPN+R+M+
Sbjct: 66 YINSPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGEPGQRRSLPNARVMV 125
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 126 HQPSGGAS---------------------GQA---------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI IQA EI++++ ++N LY KHTG SIEKI +S
Sbjct: 137 ---------SDIAIQAREILDMRSRLNKLYAKHTGSSIEKIDQS 171
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 6 LIPMVIEHTARGERAYDIFSRLLKERIVCIHGPIA 40
>gi|398823688|ref|ZP_10582044.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
YR681]
gi|398225661|gb|EJN11927.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
YR681]
Length = 211
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKTI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|268529044|ref|XP_002629648.1| C. briggsae CBR-CLPP-1 protein [Caenorhabditis briggsae]
Length = 206
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 96/135 (71%), Positives = 116/135 (85%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+T +R +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES
Sbjct: 3 SSTQARVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFMASALIAQLLFLQSES 62
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
SKKPIHMYINSPGGSVT+GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +L
Sbjct: 63 SKKPIHMYINSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSAL 122
Query: 158 PNSRIMIHQPSGGVQ 172
PN+RIM+HQPSGG Q
Sbjct: 123 PNARIMVHQPSGGAQ 137
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 82/105 (78%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +LPN+RIM+H
Sbjct: 71 INSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNARIMVH 130
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
QPSGG QG +DI I+AEEI LKK++N +YV HTG+S ++I ++
Sbjct: 131 QPSGGAQGTCSDIVIRAEEITRLKKRLNEIYVHHTGISYDEIERT 175
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
S+T +R +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 3 SSTQARVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 46
>gi|374575870|ref|ZP_09648966.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
WSM471]
gi|374424191|gb|EHR03724.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
WSM471]
Length = 211
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKAI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|386402534|ref|ZP_10087312.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
WSM1253]
gi|385743160|gb|EIG63356.1| protease subunit of ATP-dependent protease [Bradyrhizobium sp.
WSM1253]
Length = 211
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKAI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|116785036|gb|ABK23566.1| unknown [Picea sitchensis]
Length = 243
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 115/234 (49%), Positives = 143/234 (61%), Gaps = 60/234 (25%)
Query: 34 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFL 93
+FH + L+P+VIEQT RGERAYDI+SRLL+ERIIC+ G I+D ++VVVAQLLFL
Sbjct: 24 SFHSKRSYG--LIPMVIEQTSRGERAYDIFSRLLKERIICINGVIEDDTAAVVVAQLLFL 81
Query: 94 QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 153
+SE+ KPI++YINSPGG VT+GL IYDTMQY+ P++T+C+GQA SM SLLLAAG KG
Sbjct: 82 ESENPAKPINLYINSPGGVVTAGLAIYDTMQYIRSPVSTFCMGQAASMGSLLLAAGAKGE 141
Query: 154 RHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 213
R SLPN+RIMIHQPSGG GQA
Sbjct: 142 RRSLPNARIMIHQPSGGAS---------------------GQA----------------- 163
Query: 214 SLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI IQA+EI+ + ++N LY KHTG SI+KI K
Sbjct: 164 --------------------SDIAIQAKEILLTRDRLNSLYAKHTGQSIDKIEK 197
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Query: 370 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMG 412
+FH + L+P+VIEQT RGERAYDI+SRLL+ERIIC+ G
Sbjct: 24 SFHSKRSYG--LIPMVIEQTSRGERAYDIFSRLLKERIICING 64
>gi|383771490|ref|YP_005450555.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
S23321]
gi|381359613|dbj|BAL76443.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
S23321]
Length = 211
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AGEK MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGEKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKTI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|330814219|ref|YP_004358458.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter sp. IMCC9063]
gi|327487314|gb|AEA81719.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter sp. IMCC9063]
Length = 204
Score = 214 bits (544), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII ++GPI+ +SS++ AQLLFL+SE++ K I M
Sbjct: 12 LVPMVVEQTPRGERAYDIYSRLLKERIIFLVGPINSQVSSLISAQLLFLESENNSKEIFM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT GL IYDTMQY+ P +AT C+GQACSM S LLAAGEKG R SLPNSR+M+
Sbjct: 72 YINSPGGIVTDGLAIYDTMQYIKPAVATLCIGQACSMGSFLLAAGEKGQRMSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ KK++N +Y KHTG S+EKI ++
Sbjct: 143 ---------TDIEIHANEIMQTKKKLNEIYSKHTGQSVEKIKEA 177
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII ++GP++
Sbjct: 12 LVPMVVEQTPRGERAYDIYSRLLKERIIFLVGPIN 46
>gi|456354943|dbj|BAM89388.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agromonas
oligotrophica S58]
Length = 210
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S++ VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLTVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AG K MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGHKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG S + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQSYKAI 173
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|90423893|ref|YP_532263.1| endopeptidase Clp [Rhodopseudomonas palustris BisB18]
gi|116243159|sp|Q215J2.1|CLPP_RHOPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|90105907|gb|ABD87944.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Rhodopseudomonas palustris BisB18]
Length = 210
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S++ VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLTVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHPDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKAI 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|39936026|ref|NP_948302.1| endopeptidase Clp [Rhodopseudomonas palustris CGA009]
gi|192291681|ref|YP_001992286.1| endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
gi|67460293|sp|Q6N5L3.1|CLPP_RHOPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706467|sp|B3Q7P5.1|CLPP_RHOPT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|39649880|emb|CAE28402.1| ATP-dependent Clp protease proteolytic subunit [Rhodopseudomonas
palustris CGA009]
gi|192285430|gb|ACF01811.1| Endopeptidase Clp [Rhodopseudomonas palustris TIE-1]
Length = 212
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG K MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YV HTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVHHTGQTYKAI 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|316933821|ref|YP_004108803.1| endopeptidase Clp [Rhodopseudomonas palustris DX-1]
gi|315601535|gb|ADU44070.1| Endopeptidase Clp [Rhodopseudomonas palustris DX-1]
Length = 212
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG K MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YV HTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVHHTGQTYKAI 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|71083579|ref|YP_266298.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter ubique HTCC1062]
gi|91762000|ref|ZP_01263965.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter ubique HTCC1002]
gi|115311789|sp|Q4FM94.1|CLPP_PELUB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71062692|gb|AAZ21695.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter ubique HTCC1062]
gi|91717802|gb|EAS84452.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Pelagibacter ubique HTCC1002]
Length = 203
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ERII ++GPI+D+++S+V AQLLFL+SE KK I++
Sbjct: 12 LVPMVVEQSNKGERAYDIYSRLLKERIIFLVGPINDNVASLVTAQLLFLESEDPKKEINL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GLGIYDTMQY+ P ++T C+GQA SM S LLAAG+KG R SLPNSRIM+
Sbjct: 72 YINSPGGLVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A E++ LKK++N +Y KHTG S++ + K+
Sbjct: 143 ---------TDIEIHANEVLALKKRLNEIYSKHTGKSVDDVKKA 177
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ +GERAYDIYSRLL+ERII ++GP++
Sbjct: 12 LVPMVVEQSNKGERAYDIYSRLLKERIIFLVGPIN 46
>gi|365895292|ref|ZP_09433413.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. STM 3843]
gi|365424011|emb|CCE05955.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. STM 3843]
Length = 210
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S+++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C GQA SM SLLL+AG K MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLSAGHKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG S + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQSYKAI 173
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|91977364|ref|YP_570023.1| endopeptidase Clp [Rhodopseudomonas palustris BisB5]
gi|123721781|sp|Q135W7.1|CLPP_RHOPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|91683820|gb|ABE40122.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Rhodopseudomonas palustris BisB5]
Length = 214
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG K MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YV HTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVHHTGQTYKAI 173
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|115524517|ref|YP_781428.1| endopeptidase Clp [Rhodopseudomonas palustris BisA53]
gi|122296222|sp|Q07NN6.1|CLPP_RHOP5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|115518464|gb|ABJ06448.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Rhodopseudomonas palustris BisA53]
Length = 211
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLL AG K MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLCAGAKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YVKHTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVKHTGQTYKAI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|86749681|ref|YP_486177.1| endopeptidase Clp [Rhodopseudomonas palustris HaA2]
gi|116243157|sp|Q2IWZ4.1|CLPP_RHOP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|86572709|gb|ABD07266.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Rhodopseudomonas palustris HaA2]
Length = 212
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D +S++VVAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C GQA SM SLLLAAG K MR SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI+NLKK++N +YV HTG + + I
Sbjct: 142 ---------TDIMLHAQEILNLKKRLNEIYVHHTGQTYKAI 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 45
>gi|158423232|ref|YP_001524524.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
caulinodans ORS 571]
gi|172047856|sp|A8HYF2.1|CLPP_AZOC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|158330121|dbj|BAF87606.1| ATP-dependent Clp protease proteolytic subunit [Azorhizobium
caulinodans ORS 571]
Length = 210
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GP++D +S++ VAQLLFL++E+ KK I M
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVEDGMSTLAVAQLLFLEAENPKKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLL AGEKG+R +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLTAGEKGLRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ IM+H
Sbjct: 132 HQPSGGFQ---------------------GQVTD---------------------IMLH- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A+EI++LKK++N +YVKHTG IEKI
Sbjct: 149 ---------------AQEILSLKKRLNEIYVKHTGQPIEKI 174
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVE 46
>gi|58616924|ref|YP_196123.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia
ruminantium str. Gardel]
gi|67460150|sp|Q5FFG7.1|CLPP_EHRRG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|58416536|emb|CAI27649.1| ATP-dependent CLP protease proteolytic subunit [Ehrlichia
ruminantium str. Gardel]
Length = 198
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+E T RGERAYDIY+RLL+ERII + GPI+D ++S+VVAQL+FL++E+ +K I M
Sbjct: 3 LVPMVVEPTSRGERAYDIYTRLLKERIIFITGPIEDQMASLVVAQLIFLEAENPEKDISM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV P IAT C+GQA SM SLLLAAGEKGMR +LPNSRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYVKPRIATLCLGQAASMGSLLLAAGEKGMRCALPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+EI+N+K ++N +YVKHTG + ++
Sbjct: 134 ---------TDIEIHAKEILNIKSRLNYIYVKHTGRELSEV 165
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+E T RGERAYDIY+RLL+ERII + GP+
Sbjct: 3 LVPMVVEPTSRGERAYDIYTRLLKERIIFITGPIE 37
>gi|341877870|gb|EGT33805.1| CBN-CLPP-1 protein [Caenorhabditis brenneri]
Length = 223
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 95/135 (70%), Positives = 114/135 (84%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+ SR +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES
Sbjct: 20 SSIQSRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSES 79
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
KKPIHMYINSPGGSVT+GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +L
Sbjct: 80 GKKPIHMYINSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSAL 139
Query: 158 PNSRIMIHQPSGGVQ 172
PN+RIM+HQPSGG Q
Sbjct: 140 PNARIMVHQPSGGAQ 154
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
S+ SR +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 20 SSIQSRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 63
>gi|116793577|gb|ABK26796.1| unknown [Picea sitchensis]
Length = 248
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE T RGERAYDI+SRLL+ERIIC+ GPI D +SVVVAQLLFL+SE+ +KPI+M
Sbjct: 37 LIPMVIEHTSRGERAYDIFSRLLKERIICINGPIADETASVVVAQLLFLESENPQKPINM 96
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 97 YINSPGGVVTAGLAIYDTMQYIKSPVTTLCIGQAASMGSLLLAAGSHGERRALPNARVMI 156
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 157 HQPSGGAS---------------------GQA---------------------------- 167
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++++NGLY KHTG +IEKI
Sbjct: 168 ---------SDIAIHAKEILKTRERLNGLYAKHTGQTIEKI 199
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE T RGERAYDI+SRLL+ERIIC+ GP++
Sbjct: 37 LIPMVIEHTSRGERAYDIFSRLLKERIICINGPIA 71
>gi|58584810|ref|YP_198383.1| ATP-dependent Clp protease proteolytic subunit [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|67460156|sp|Q5GS83.1|CLPP_WOLTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|58419126|gb|AAW71141.1| Protease subunit of ATP-dependent Clp protease [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 208
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIVIEQT RGERAYDIYSRL++ERII V GP++D+++SV+VAQLLFL+SE+ K I+M
Sbjct: 3 LIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG +G R+SLP+SRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGYQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A EI+ +K+++N +Y KHTG S++KI
Sbjct: 134 ---------TDIEIHANEILRVKRKLNQIYEKHTGNSLKKI 165
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIVIEQT RGERAYDIYSRL++ERII V GPV
Sbjct: 3 LIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVE 37
>gi|240849147|ref|NP_001155481.1| putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial [Acyrthosiphon pisum]
gi|239792011|dbj|BAH72394.1| ACYPI002586 [Acyrthosiphon pisum]
Length = 224
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/159 (62%), Positives = 126/159 (79%), Gaps = 12/159 (7%)
Query: 26 LSLGHLAKTFHHSATL----SRPL--------VPIVIEQTGRGERAYDIYSRLLRERIIC 73
+SL H HS+ + + P+ +PIV+EQTGRGER+YDI+SRLL+ERIIC
Sbjct: 1 MSLSHTRSLLQHSSKILQLSNGPISNSIRGLTIPIVVEQTGRGERSYDIFSRLLKERIIC 60
Query: 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATW 133
VMG I+D ++S+V+AQLLFLQ E+ K I+MYINSPGGSVT+GLGIYDTM Y+ P ++TW
Sbjct: 61 VMGEINDHVASLVIAQLLFLQFENQKATINMYINSPGGSVTAGLGIYDTMMYIKPDVSTW 120
Query: 134 CVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 172
C+GQACSM S+LLAAG KG RH+LP+SRIMIHQPSGG+Q
Sbjct: 121 CIGQACSMGSVLLAAGAKGKRHALPHSRIMIHQPSGGMQ 159
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 82/105 (78%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GLGIYDTM Y+ P ++TWC+GQACSM S+LLAAG KG RH+LP+SRIMIH
Sbjct: 93 INSPGGSVTAGLGIYDTMMYIKPDVSTWCIGQACSMGSVLLAAGAKGKRHALPHSRIMIH 152
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
QPSGG+QG+A+D++I +EI+ LK + +Y KHTG+ +KI S
Sbjct: 153 QPSGGMQGKASDMKIVTDEILRLKSSLIDIYGKHTGMPADKIDAS 197
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 44/66 (66%), Gaps = 12/66 (18%)
Query: 362 LSLGHLAKTFHHSATL----SRPL--------VPIVIEQTGRGERAYDIYSRLLRERIIC 409
+SL H HS+ + + P+ +PIV+EQTGRGER+YDI+SRLL+ERIIC
Sbjct: 1 MSLSHTRSLLQHSSKILQLSNGPISNSIRGLTIPIVVEQTGRGERSYDIFSRLLKERIIC 60
Query: 410 VMGPVS 415
VMG ++
Sbjct: 61 VMGEIN 66
>gi|402703462|ref|ZP_10851441.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
helvetica C9P9]
Length = 201
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/223 (51%), Positives = 139/223 (62%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +KK INGLY KHTG I+ + KS
Sbjct: 134 --------TDIEIHAQETLKIKKLINGLYSKHTGQDIQYVEKS 168
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|73666834|ref|YP_302850.1| ATP-dependent Clp protease proteolytic subunit [Ehrlichia canis
str. Jake]
gi|108935919|sp|Q3YSQ3.1|CLPP_EHRCJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72393975|gb|AAZ68252.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ehrlichia
canis str. Jake]
Length = 200
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GPI+D ++S+VVAQL+FL++E+ +K I M
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLVVAQLVFLEAENPEKEICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAGE GMR++LPNSRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+EI+++K ++N +YVKHTG + ++
Sbjct: 134 ---------TDIEIHAKEILDIKSRLNDIYVKHTGRDLPEV 165
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + GP+
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIE 37
>gi|88658316|ref|YP_507695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
chaffeensis str. Arkansas]
gi|115311357|sp|Q2GFT8.1|CLPP_EHRCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|88599773|gb|ABD45242.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ehrlichia
chaffeensis str. Arkansas]
Length = 199
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 141/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GPI+D ++S++VAQL+FL+SE+ +K I M
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAGE GMR++LPNSRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMRYALPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+EI+++K ++N +YVKHTG + ++
Sbjct: 134 ---------TDIEIHAKEILDIKGRLNDIYVKHTGRDLSEV 165
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + GP+
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIE 37
>gi|307107893|gb|EFN56134.1| hypothetical protein CHLNCDRAFT_56121 [Chlorella variabilis]
Length = 209
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIE T RGERA+DIYSRLLRERI+CV GPIDD LS+++VAQLL+L+SE+ +KPI +
Sbjct: 1 MVPVVIESTSRGERAFDIYSRLLRERIVCVNGPIDDHLSNLIVAQLLYLESENPEKPISL 60
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T VGQA SMASLLLAAGE G R SLP+SR+M+
Sbjct: 61 YINSPGGVVTAGLAIYDTMQYIRCPVGTLAVGQAASMASLLLAAGEAGQRRSLPHSRVMV 120
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 121 HQPSGGAR---------------------GQA---------------------------- 131
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+EI+ +++ +NGLYVKHTG + +++
Sbjct: 132 ---------TDIAIAAKEILKMRELLNGLYVKHTGQTAQRV 163
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIE T RGERA+DIYSRLLRERI+CV GP+
Sbjct: 1 MVPVVIESTSRGERAFDIYSRLLRERIVCVNGPID 35
>gi|308462025|ref|XP_003093299.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
gi|308250366|gb|EFO94318.1| CRE-CLPP-1 protein [Caenorhabditis remanei]
Length = 222
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 94/131 (71%), Positives = 112/131 (85%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
SR +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES KKP
Sbjct: 23 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKP 82
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IHMYINSPGGSVT+GL IYDTMQ + P+ATW +GQA SM SLLLAAGEKGMR +LPN+R
Sbjct: 83 IHMYINSPGGSVTAGLAIYDTMQMISAPVATWVIGQASSMGSLLLAAGEKGMRSALPNAR 142
Query: 162 IMIHQPSGGVQ 172
IM+HQPSGG Q
Sbjct: 143 IMVHQPSGGAQ 153
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
SR +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 23 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 62
>gi|326427885|gb|EGD73455.1| ATP-dependent Clp protease proteolytic subunit [Salpingoeca sp.
ATCC 50818]
Length = 267
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/127 (76%), Positives = 114/127 (89%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDI+SRLLRERI+C+MGP++D LSS++ AQLL+L+SE+ ++ IHM
Sbjct: 59 LVPIVIEQTHRGERAYDIFSRLLRERIVCLMGPVNDELSSLITAQLLYLESENPEETIHM 118
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYV P IAT CVGQACSM SLLL AG KG R++LP+SRIM+
Sbjct: 119 YINSPGGSVTAGLGIYDTMQYVKPKIATLCVGQACSMGSLLLTAGAKGHRYALPHSRIMV 178
Query: 165 HQPSGGV 171
HQPSGG
Sbjct: 179 HQPSGGA 185
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/96 (71%), Positives = 77/96 (80%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GLGIYDTMQYV P IAT CVGQACSM SLLL AG KG R++LP+SRIM+H
Sbjct: 120 INSPGGSVTAGLGIYDTMQYVKPKIATLCVGQACSMGSLLLTAGAKGHRYALPHSRIMVH 179
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
QPSGG GQATDIQIQAEEI+ LK I +YV+HTG
Sbjct: 180 QPSGGAYGQATDIQIQAEEILKLKNTICDIYVQHTG 215
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/35 (85%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDI+SRLLRERI+C+MGPV+
Sbjct: 59 LVPIVIEQTHRGERAYDIFSRLLRERIVCLMGPVN 93
>gi|145341425|ref|XP_001415810.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
[Ostreococcus lucimarinus CCE9901]
gi|144576033|gb|ABO94102.1| mitochondrial Clp protease, subunit of ClpP peptidase complex
[Ostreococcus lucimarinus CCE9901]
Length = 232
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 149/248 (60%), Gaps = 62/248 (25%)
Query: 23 FQGLSLGHLAKTFHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPI 78
+G S +++T H + ++ P LVP+V+EQT RGER +DIYSRLL+ERI+ V GPI
Sbjct: 6 LRGASRALISRTSSHPSRIAHPRTYALVPMVLEQTNRGERVFDIYSRLLKERIVFVNGPI 65
Query: 79 DDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQA 138
DD++SS+ VAQLLFL+S S +PI MYINSPGGSVT+GLGIYDTMQYV PPI T CVGQA
Sbjct: 66 DDNVSSLTVAQLLFLESVSPTQPIWMYINSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQA 125
Query: 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198
SM SLLLAAGE G R SLP+SR+M+HQPSGG GQA
Sbjct: 126 SSMGSLLLAAGEPGQRRSLPHSRVMLHQPSGG---------------------ASGQA-- 162
Query: 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
+DI I A+EI+N+++++ +Y+KHT
Sbjct: 163 -----------------------------------SDIAIHAQEILNVRQKLVQIYMKHT 187
Query: 259 GLSIEKIG 266
+ + IG
Sbjct: 188 KQNFDSIG 195
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 359 FQGLSLGHLAKTFHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+G S +++T H + ++ P LVP+V+EQT RGER +DIYSRLL+ERI+ V GP+
Sbjct: 6 LRGASRALISRTSSHPSRIAHPRTYALVPMVLEQTNRGERVFDIYSRLLKERIVFVNGPI 65
Query: 415 S 415
Sbjct: 66 D 66
>gi|392572059|gb|EIW65231.1| hypothetical protein TRAVEDRAFT_55853 [Trametes versicolor
FP-101664 SS1]
Length = 257
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/144 (69%), Positives = 119/144 (82%)
Query: 28 LGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVV 87
LG+ H+ ++ LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++VV
Sbjct: 37 LGNWNALRGHAHPVTANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIMDTDSALVV 96
Query: 88 AQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 147
AQLLFL++E + KPIH+Y+NSPGGSVT+GL IYDTMQYV PI T+CVGQACSM SLLL
Sbjct: 97 AQLLFLEAEETSKPIHVYVNSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLV 156
Query: 148 AGEKGMRHSLPNSRIMIHQPSGGV 171
AGEKG RH+LPNS IMIHQPSGG
Sbjct: 157 AGEKGKRHALPNSSIMIHQPSGGA 180
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 78/111 (70%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ ++ P G V GL IYDTMQYV PI T+CVGQACSM SLLL AGEKG RH+LPNS IM
Sbjct: 113 VYVNSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLVAGEKGKRHALPNSSIM 172
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCF 272
IHQPSGG GQATDI I A+EI+ +++ + G+Y KH E + + F
Sbjct: 173 IHQPSGGASGQATDIAIHAKEILRVREVLTGIYQKHCAHEGESVQEGVDRF 223
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 364 LGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LG+ H+ ++ LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 37 LGNWNALRGHAHPVTANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 87
>gi|324529259|gb|ADY48999.1| ATP-dependent Clp protease proteolytic subunit 1, partial [Ascaris
suum]
Length = 218
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 119/155 (76%), Gaps = 5/155 (3%)
Query: 18 LCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGP 77
L P I SL L HS L +P+VI+ GR ER YDIYSRLL++RIICVM P
Sbjct: 3 LLPTIRHFTSLRRL-----HSGILRAQSIPLVIDNDGRIERVYDIYSRLLKDRIICVMTP 57
Query: 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQ 137
I+D ++S ++AQLL+LQ ESSK I+MYINSPGGSVT+GLGIYDTMQY+ P+ATWC+GQ
Sbjct: 58 INDQVASAIIAQLLYLQGESSKSTINMYINSPGGSVTAGLGIYDTMQYISAPVATWCIGQ 117
Query: 138 ACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 172
A SM SLLL AGEKGMR SLPNSRIM+HQPSGG +
Sbjct: 118 ASSMGSLLLCAGEKGMRSSLPNSRIMVHQPSGGAE 152
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 354 LCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGP 413
L P I SL L HS L +P+VI+ GR ER YDIYSRLL++RIICVM P
Sbjct: 3 LLPTIRHFTSLRRL-----HSGILRAQSIPLVIDNDGRIERVYDIYSRLLKDRIICVMTP 57
Query: 414 VS 415
++
Sbjct: 58 IN 59
>gi|149916365|ref|ZP_01904885.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
gi|149809819|gb|EDM69671.1| phosphoglycerate kinase [Roseobacter sp. AzwK-3b]
Length = 210
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/221 (50%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEAENPAKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSRIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LKK++N +YVKHTG +++K+
Sbjct: 143 ---------TDIMIHAEETLKLKKRLNQIYVKHTGQTLKKV 174
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPV 45
>gi|402851379|ref|ZP_10899539.1| ATP-dependent Clp protease proteolytic subunit [Rhodovulum sp.
PH10]
gi|402498354|gb|EJW10106.1| ATP-dependent Clp protease proteolytic subunit [Rhodovulum sp.
PH10]
Length = 209
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII V G ++D +SS++VAQLLFL++E+ KK I M
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFVTGVVEDGMSSLIVAQLLFLEAENPKKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C GQA SM SLLL AG K MR +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLTAGHKDMRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A+EIINL++++N +YV HTG I+KI ++
Sbjct: 143 ---------TDIMIHAQEIINLRRRLNEIYVVHTGQEIKKIEEA 177
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII V G V
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFVTGVVE 46
>gi|422292888|gb|EKU20189.1| ATP-dependent Clp protease, protease subunit [Nannochloropsis
gaditana CCMP526]
Length = 202
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ KK I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENPKKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSRIM+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRIMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGFQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YV HTG ++E +
Sbjct: 135 ---------TDIMIHAEETLKLKRRLNEIYVTHTGQTLENV 166
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPV 37
>gi|392596999|gb|EIW86321.1| hypothetical protein CONPUDRAFT_46589 [Coniophora puteana
RWD-64-598 SS2]
Length = 238
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/134 (73%), Positives = 115/134 (85%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+ S LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI+D+ S++ VAQLLFL++E
Sbjct: 32 SSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPINDNDSALTVAQLLFLEAEE 91
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
+ KPIH+YINSPGGSVT+GL IYDTMQYV PI T+CVGQACSM SLLLAAGEKG RH L
Sbjct: 92 TSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHCL 151
Query: 158 PNSRIMIHQPSGGV 171
PN+ IMIHQPSGG
Sbjct: 152 PNASIMIHQPSGGA 165
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 73/96 (76%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDTMQYV PI T+CVGQACSM SLLLAAGEKG RH LPN+ IM
Sbjct: 98 LYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHCLPNASIM 157
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
IHQPSGG GQA+DI I A+EI+ +++ + +Y +H
Sbjct: 158 IHQPSGGASGQASDIAIHAKEILRVRQLLTSIYQRH 193
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S+ S LVPIVIEQTGRGER+YDI+SRLLRER+I + GP++
Sbjct: 32 SSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIN 73
>gi|154247518|ref|YP_001418476.1| endopeptidase Clp [Xanthobacter autotrophicus Py2]
gi|226706559|sp|A7ILC6.1|CLPP_XANP2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|154161603|gb|ABS68819.1| Endopeptidase Clp [Xanthobacter autotrophicus Py2]
Length = 211
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGER+YDI+SRLL+ERII + GP++D +S++ VAQLLFL++++ KK I M
Sbjct: 12 LIPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDGMSTLAVAQLLFLEADNPKKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLL AGEK MR +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKDMRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ IM+H
Sbjct: 132 HQPSGGFQ---------------------GQVTD---------------------IMLH- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A+EI+NLK+++N +YVKHTG S++KI
Sbjct: 149 ---------------AQEILNLKRRLNEIYVKHTGRSMDKI 174
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 12 LIPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 46
>gi|353241475|emb|CCA73288.1| related to endopeptidase Clp [Piriformospora indica DSM 11827]
Length = 240
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/137 (71%), Positives = 117/137 (85%), Gaps = 2/137 (1%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F H+++ R LVPIVIEQTGRGER+YDIYSRLLRER+I + GP+ D+LSS++VAQLLFL+
Sbjct: 20 FFHASSARRTLVPIVIEQTGRGERSYDIYSRLLRERVIMLCGPVHDNLSSLIVAQLLFLE 79
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E S +PIH+YINSPGGSVT+G+GIYDT YV PI T+CVGQA SM SLLLAAGEKG R
Sbjct: 80 AEESTRPIHLYINSPGGSVTAGMGIYDT--YVSSPIHTYCVGQAASMGSLLLAAGEKGHR 137
Query: 155 HSLPNSRIMIHQPSGGV 171
H LPN+ +MIHQPSGG
Sbjct: 138 HILPNATVMIHQPSGGA 154
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F H+++ R LVPIVIEQTGRGER+YDIYSRLLRER+I + GPV
Sbjct: 20 FFHASSARRTLVPIVIEQTGRGERSYDIYSRLLRERVIMLCGPV 63
>gi|91205226|ref|YP_537581.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
RML369-C]
gi|157827437|ref|YP_001496501.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
OSU 85-389]
gi|91068770|gb|ABE04492.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
RML369-C]
gi|157802741|gb|ABV79464.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia bellii
OSU 85-389]
Length = 264
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 138/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V GPI+D +++++ AQLLFL++E+ +K I+MY
Sbjct: 63 VPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMY 122
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM S LL GEKGMR+SLP+SR+MIH
Sbjct: 123 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIH 182
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 183 QPSGGYR---------------------GQA----------------------------- 192
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +KK +N LY KHTG ++ + KS
Sbjct: 193 --------TDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKS 227
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQT RGERAYDIYSRLL+ERII V GP+
Sbjct: 63 VPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIE 96
>gi|89070383|ref|ZP_01157690.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
granulosus HTCC2516]
gi|89044030|gb|EAR50205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Oceanicola
granulosus HTCC2516]
Length = 209
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D ++S++VAQL+ L++E+ KK I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMASLIVAQLIHLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ PP++T +GQA SM SLLLA GEKGMR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIKPPVSTLVIGQAASMGSLLLAGGEKGMRLSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YVKHTG +++K+
Sbjct: 142 ---------TDIMIHAEETLKLKRRLNEIYVKHTGQTLKKV 173
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 44
>gi|148255923|ref|YP_001240508.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
sp. BTAi1]
gi|166201801|sp|A5EKA8.1|CLPP_BRASB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|146408096|gb|ABQ36602.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bradyrhizobium
sp. BTAi1]
Length = 210
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +++++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C GQA SM SLLL AG K MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI + A+EI++LKK++N +YVKHTG S + I
Sbjct: 142 ---------TDIMLHAQEILSLKKRLNEIYVKHTGQSYKAI 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|88607298|ref|YP_505537.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma
phagocytophilum HZ]
gi|115311354|sp|Q2GJB4.1|CLPP_ANAPZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|88598361|gb|ABD43831.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaplasma
phagocytophilum HZ]
Length = 197
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQTGRGERAYDIYSRLL+ERII V GPI+D ++S++VAQL+FL++E +K I M
Sbjct: 3 LVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDISM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P +AT C+GQA SM SLLL AG GMR +LPNSR+MI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPGMRCALPNSRVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 123 HQPSGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +K+++N ++V+HTG S+E+I S
Sbjct: 134 ---------TDIEIHAREILEIKRRLNEIFVRHTGKSLEEIESS 168
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQTGRGERAYDIYSRLL+ERII V GP+
Sbjct: 3 LVPMVVEQTGRGERAYDIYSRLLKERIIFVTGPIE 37
>gi|148284741|ref|YP_001248831.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
str. Boryong]
gi|189183283|ref|YP_001937068.1| ATP-dependent Clp protease proteolytic subunit [Orientia
tsutsugamushi str. Ikeda]
gi|146740180|emb|CAM80416.1| ATP-dependent protease proteolytic subunit [Orientia tsutsugamushi
str. Boryong]
gi|189180054|dbj|BAG39834.1| ATP-dependent Clp protease proteolytic subunit [Orientia
tsutsugamushi str. Ikeda]
Length = 206
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+EQT RGERAYDIYSRLL+ERI+ V G I+D ++++VVAQLLFL++ES K I MY
Sbjct: 10 VPMVVEQTNRGERAYDIYSRLLKERIVFVCGEIEDHMANLVVAQLLFLEAESPDKKIFMY 69
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG+VT+G+ IYDTMQY+ P+ T C+GQACSM SLLLAAG+K MRH LPNSRIMIH
Sbjct: 70 INSPGGAVTAGMAIYDTMQYIKSPVLTLCLGQACSMGSLLLAAGQKSMRHCLPNSRIMIH 129
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 130 QPSGGFR---------------------GQA----------------------------- 139
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDIQI A+EI+ +KK IN LYV HT ++ I +S
Sbjct: 140 --------TDIQIHAQEILKMKKIINNLYVHHTNQPLQVIEES 174
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+EQT RGERAYDIYSRLL+ERI+ V G +
Sbjct: 10 VPMVVEQTNRGERAYDIYSRLLKERIVFVCGEIE 43
>gi|389756357|ref|ZP_10191467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 115]
gi|388431605|gb|EIL88663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 115]
Length = 209
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 138/222 (62%), Gaps = 58/222 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGER+YDIYSRLL+ER+I ++GPIDD++++V+VAQ+LFL+SE+ K IH
Sbjct: 11 LIPMVVEQTARGERSYDIYSRLLKERVIFLVGPIDDNVANVIVAQMLFLESENPDKDIHF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P ++T C+GQACS SLLL AG G R +LPNSR+MI
Sbjct: 71 YINSPGGVVTAGLAIYDTMQFIKPDVSTMCIGQACSAGSLLLMAGAAGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIG 266
TDI+I A+EI+ L++++NGLY HTG IE+I
Sbjct: 142 ---------TDIEIHAKEILYLRQRLNGLYAHHTGKPIEEIA 174
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGER+YDIYSRLL+ER+I ++GP+
Sbjct: 11 LIPMVVEQTARGERSYDIYSRLLKERVIFLVGPID 45
>gi|308798991|ref|XP_003074276.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
gi|116000447|emb|CAL50127.1| COG0515: Serine/threonine protein kinase (ISS) [Ostreococcus tauri]
Length = 742
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/222 (50%), Positives = 136/222 (61%), Gaps = 58/222 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER +DIYSRLL+ERI+ + GPIDD+ SS+ VAQLLFL+S S PI M
Sbjct: 545 LVPMVLEQTNRGERVFDIYSRLLKERIVFINGPIDDTASSLAVAQLLFLESASPTAPIWM 604
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGGSVT+GLGIYDTMQYV PPI T CVGQA SMASLLLAAG KG R SLPNSR+M+
Sbjct: 605 YVNSPGGSVTAGLGIYDTMQYVSPPIHTLCVGQASSMASLLLAAGAKGERRSLPNSRVML 664
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 665 HQPSGGAS---------------------GQA---------------------------- 675
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIG 266
+DI I A+EI+N+++++ +Y+KHT +KIG
Sbjct: 676 ---------SDIAIHAQEILNVREKLIHIYMKHTNQEYDKIG 708
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER +DIYSRLL+ERI+ + GP+
Sbjct: 545 LVPMVLEQTNRGERVFDIYSRLLKERIVFINGPID 579
>gi|254467045|ref|ZP_05080456.1| Clp protease [Rhodobacterales bacterium Y4I]
gi|206687953|gb|EDZ48435.1| Clp protease [Rhodobacterales bacterium Y4I]
Length = 202
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGFQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LKK++N +YVKHTG E +
Sbjct: 135 ---------TDIMIHAEETLKLKKRLNEIYVKHTGQDYETV 166
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFVNGPV 37
>gi|296136117|ref|YP_003643359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
gi|295796239|gb|ADG31029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiomonas
intermedia K12]
Length = 202
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 152/259 (58%), Gaps = 67/259 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+GRGERAYDIYSRLLRER+I ++GPI+D ++++VVAQLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + L+AAG KG R+SLPNSRIMI
Sbjct: 71 YINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+IQA EI+ L++++NG+ + TG ++EKIG D F++
Sbjct: 142 ---------TDIEIQAREILYLRERLNGILAERTGQTLEKIG---------IDTERDFFM 183
Query: 285 NGLYVKHTGLSIEKIGKST 303
+ K GL E I K +
Sbjct: 184 SAEEAKDYGLIDEVISKRS 202
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQ+GRGERAYDIYSRLLRER+I ++GP++
Sbjct: 11 LVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPIN 45
>gi|406706127|ref|YP_006756480.1| ATP-dependent Clp protease proteolytic subunit ClpP [alpha
proteobacterium HIMB5]
gi|406651903|gb|AFS47303.1| ATP-dependent Clp protease proteolytic subunit ClpP [alpha
proteobacterium HIMB5]
Length = 203
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ERII + G I+D+++S+V AQLLFL++E KK I++
Sbjct: 12 LVPMVVEQSSKGERAYDIYSRLLKERIIFLTGQINDNVASLVTAQLLFLEAEDPKKEIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GLGIYDTMQY+ P I+T C+GQA SM S LLAAG KG R SLPNSR+M+
Sbjct: 72 YINSPGGLVTAGLGIYDTMQYIKPEISTLCIGQAASMGSFLLAAGSKGKRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A E+++LKK++N +Y KHTG S+++I
Sbjct: 143 ---------TDIEIHANEVLSLKKRLNEIYSKHTGKSVDEI 174
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ +GERAYDIYSRLL+ERII + G ++
Sbjct: 12 LVPMVVEQSSKGERAYDIYSRLLKERIIFLTGQIN 46
>gi|410693928|ref|YP_003624550.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
gi|294340353|emb|CAZ88734.1| ATP-dependent Clp protease proteolytic subunit precursor
(Endopeptidase Clp) (Caseinolytic protease) (Protease
Ti) (Heat shock protein F21.5) [Thiomonas sp. 3As]
Length = 202
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/259 (44%), Positives = 152/259 (58%), Gaps = 67/259 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+GRGERAYDIYSRLLRER+I ++GPI+D ++++VVAQLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPINDQMANLVVAQLLFLESENPDKDISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + L+AAG KG R+SLPNSRIMI
Sbjct: 71 YINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGKRYSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+IQA EI+ L++++NG+ + TG ++EKIG T F++
Sbjct: 142 ---------TDIEIQAREILYLRERLNGILAERTGQTLEKIGIDTER---------DFFM 183
Query: 285 NGLYVKHTGLSIEKIGKST 303
+ K GL E I K +
Sbjct: 184 SADEAKDYGLIDEVISKRS 202
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQ+GRGERAYDIYSRLLRER+I ++GP++
Sbjct: 11 LVPMVIEQSGRGERAYDIYSRLLRERVIFLVGPIN 45
>gi|116243161|sp|Q1RJH2.2|CLPP_RICBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 227
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 138/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V GPI+D +++++ AQLLFL++E+ +K I+MY
Sbjct: 26 VPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIEDHMANLITAQLLFLEAENPEKDIYMY 85
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM S LL GEKGMR+SLP+SR+MIH
Sbjct: 86 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRVMIH 145
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 146 QPSGGYR---------------------GQA----------------------------- 155
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +KK +N LY KHTG ++ + KS
Sbjct: 156 --------TDIEIHAQETLKIKKILNSLYSKHTGQDVKHVEKS 190
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQT RGERAYDIYSRLL+ERII V GP+
Sbjct: 26 VPIVIEQTSRGERAYDIYSRLLKERIIFVCGPIE 59
>gi|403414739|emb|CCM01439.1| predicted protein [Fibroporia radiculosa]
Length = 257
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 141/242 (58%), Gaps = 58/242 (23%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
LA + + LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++ VAQL
Sbjct: 39 LATDWSSPPAIQSNLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALTVAQL 98
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL++E + KPIH+YINSPGGSVT+GL IYDTMQYV PI T+CVGQACSM SLLLAAGE
Sbjct: 99 LFLEAEETSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGE 158
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
KG RH+LP+S IMIHQPSGG GQA
Sbjct: 159 KGKRHALPHSTIMIHQPSGGAS---------------------GQA-------------- 183
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV 270
+DI I A+EI+ +++ + G+Y KH G E +
Sbjct: 184 -----------------------SDIAIHAKEILRVRELLTGIYQKHCGHESEHLKDGMR 220
Query: 271 CF 272
F
Sbjct: 221 RF 222
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LA + + LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 39 LATDWSSPPAIQSNLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 86
>gi|190573022|ref|YP_001970867.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia K279a]
gi|194364614|ref|YP_002027224.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia R551-3]
gi|344206260|ref|YP_004791401.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia JV3]
gi|408823480|ref|ZP_11208370.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
geniculata N1]
gi|424667284|ref|ZP_18104309.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia Ab55555]
gi|226706475|sp|B2FQR2.1|CLPP_STRMK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|190010944|emb|CAQ44553.1| ATP-dependent clp protease proteolytic subunit [Stenotrophomonas
maltophilia K279a]
gi|194347418|gb|ACF50541.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Stenotrophomonas maltophilia R551-3]
gi|343777622|gb|AEM50175.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia JV3]
gi|401069419|gb|EJP77941.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia Ab55555]
gi|456738229|gb|EMF62906.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia EPM1]
Length = 208
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++VVVAQLLFL+SE+ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESENPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T C+GQA SM +LLLAAGE G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGYQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|336365751|gb|EGN94100.1| hypothetical protein SERLA73DRAFT_188682 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378353|gb|EGO19511.1| hypothetical protein SERLADRAFT_479029 [Serpula lacrymans var.
lacrymans S7.9]
Length = 246
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/141 (72%), Positives = 117/141 (82%), Gaps = 2/141 (1%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
LA T+ S T + LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++ VAQL
Sbjct: 27 LATTWGSSPTAN--LVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALTVAQL 84
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL++E S KPIH+YINSPGGSVT+GL IYDTMQYV PI T+CVGQACSM SLLLAAG
Sbjct: 85 LFLEAEESSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGA 144
Query: 151 KGMRHSLPNSRIMIHQPSGGV 171
KG RH LPN+ IMIHQPSGG
Sbjct: 145 KGKRHCLPNASIMIHQPSGGA 165
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 39/48 (81%), Gaps = 2/48 (4%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LA T+ S T + LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 27 LATTWGSSPTAN--LVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 72
>gi|26989024|ref|NP_744449.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
KT2440]
gi|148548677|ref|YP_001268779.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
F1]
gi|339486803|ref|YP_004701331.1| ATP-dependent Clp protease, proteolytic subunit [Pseudomonas putida
S16]
gi|395444305|ref|YP_006384558.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
ND6]
gi|421530071|ref|ZP_15976578.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
S11]
gi|431801808|ref|YP_007228711.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
HB3267]
gi|38257487|sp|Q88KJ0.1|CLPP_PSEPK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214701|sp|A5W635.1|CLPP_PSEP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|24983847|gb|AAN67913.1|AE016423_8 ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
putida KT2440]
gi|148512735|gb|ABQ79595.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
putida F1]
gi|171362771|dbj|BAG15849.1| probable ATP-dependent clp protease [Pseudomonas putida]
gi|338837646|gb|AEJ12451.1| ATP-dependent Clp protease, proteolytic subunit [Pseudomonas putida
S16]
gi|388558302|gb|AFK67443.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
ND6]
gi|402212478|gb|EJT83868.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
S11]
gi|430792573|gb|AGA72768.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
HB3267]
Length = 213
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|398847904|ref|ZP_10604778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM84]
gi|398250862|gb|EJN36154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM84]
Length = 213
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKARLNELLAYHTGQELETIKRDT 185
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|260427575|ref|ZP_05781554.1| Clp protease [Citreicella sp. SE45]
gi|260422067|gb|EEX15318.1| Clp protease [Citreicella sp. SE45]
Length = 210
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENPAKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P I+T +GQA SM SLLL AGE GMR SLPNSRIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKISTLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YV+HTG ++EK+
Sbjct: 143 ---------TDIMIHAEETLKLKRRLNEIYVRHTGQTLEKV 174
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPV 45
>gi|298292194|ref|YP_003694133.1| ATP-dependent Clp protease proteolytic subunit ClpP [Starkeya
novella DSM 506]
gi|296928705|gb|ADH89514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Starkeya
novella DSM 506]
Length = 210
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D++++++VAQLLFL++E+ KK I M
Sbjct: 12 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDNMATLMVAQLLFLEAENPKKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLL AGEKGMR +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGEKGMRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ IM+H
Sbjct: 132 HQPSGGFQ---------------------GQVTD---------------------IMLH- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A+EI++LKK++N +YVKHTG ++ +
Sbjct: 149 ---------------AQEILSLKKRLNEIYVKHTGQDLKAV 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 46
>gi|421521992|ref|ZP_15968641.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
LS46]
gi|402754253|gb|EJX14738.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
LS46]
Length = 213
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKARLNELLAYHTGQELETIKRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|326519674|dbj|BAK00210.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 256
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KPIH+
Sbjct: 31 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPAKPIHL 90
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 91 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 150
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 151 HQPSGGAS---------------------GQA---------------------------- 161
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI IQA+EI+ ++ ++N +Y KHTG +I++I
Sbjct: 162 ---------SDIAIQAKEILKVRDRLNKIYAKHTGQAIDRI 193
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 31 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIA 65
>gi|357150338|ref|XP_003575425.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Brachypodium distachyon]
Length = 302
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 140/229 (61%), Gaps = 58/229 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
+S+ L LVP+V+E T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE
Sbjct: 70 YSSALEYGLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESE 129
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ KPI +YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +
Sbjct: 130 NPLKPISLYINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRA 189
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPN+R+MIHQPSGG Q GQA
Sbjct: 190 LPNARVMIHQPSGGAQ---------------------GQA-------------------- 208
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG +I+KI
Sbjct: 209 -----------------TDIAIQAKEILKLRDRLNKIYAKHTGQNIDKI 240
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+S+ L LVP+V+E T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 70 YSSALEYGLVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIA 112
>gi|357168023|ref|XP_003581445.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Brachypodium distachyon]
Length = 300
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 134/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KPIH+
Sbjct: 77 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPAKPIHL 136
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 137 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 196
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 197 HQPSGGAS---------------------GQA---------------------------- 207
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI I A+EI+ ++ ++N +Y KHTG +IE I K
Sbjct: 208 ---------SDIAIHAKEILKVRDRLNKIYAKHTGQAIESIEK 241
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 77 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIA 111
>gi|255002920|ref|ZP_05277884.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Puerto Rico]
gi|255004048|ref|ZP_05278849.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Virginia]
Length = 198
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 142/224 (63%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + G ++D+++S++VAQL+FL++E+ +K I +
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM +LLLA GE GMR++LPNSRIM+
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 123 HQPSGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +K+++N +YVKHTG S+E+I S
Sbjct: 134 ---------TDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESS 168
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + G V
Sbjct: 3 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVE 37
>gi|395326377|gb|EJF58787.1| hypothetical protein DICSQDRAFT_156575, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 257
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/135 (71%), Positives = 116/135 (85%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
H+ ++ LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+ S+++VAQLLFL++E
Sbjct: 46 HAHPVTANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALIVAQLLFLEAE 105
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ KPIH+YINSPGGSVT+GL IYDTMQYV PI T+CVGQACSM SLLLAAGEK RH+
Sbjct: 106 ETSKPIHVYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGEKSKRHA 165
Query: 157 LPNSRIMIHQPSGGV 171
LP+S IMIHQPSGG
Sbjct: 166 LPHSSIMIHQPSGGA 180
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 76/104 (73%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDTMQYV PI T+CVGQACSM SLLLAAGEK RH+LP+S IM
Sbjct: 113 VYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQACSMGSLLLAAGEKSKRHALPHSSIM 172
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
IHQPSGG GQA+DI I A+EI+ +++ + G+Y KH E +
Sbjct: 173 IHQPSGGASGQASDIAIHAKEILRVREVLTGIYQKHCAREGESV 216
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
H+ ++ LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 46 HAHPVTANLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 87
>gi|226501814|ref|NP_001150578.1| LOC100284211 [Zea mays]
gi|195640324|gb|ACG39630.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 260
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 37 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 96
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG G R +LPN+R+MI
Sbjct: 97 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGQRRALPNARVMI 156
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 157 HQPSGGAS---------------------GQA---------------------------- 167
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHTG +I++I
Sbjct: 168 ---------SDIAIHAKEILKVRDRLNKIYAKHTGQAIDRI 199
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 37 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 71
>gi|157803694|ref|YP_001492243.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. McKiel]
gi|379022874|ref|YP_005299535.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. CA410]
gi|166214705|sp|A8EYM5.1|CLPP_RICCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157784957|gb|ABV73458.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. McKiel]
gi|376323812|gb|AFB21053.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
canadensis str. CA410]
Length = 201
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM S LL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 124 QPSGGYQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQDVKHIEKS 168
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|67459164|ref|YP_246788.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
URRWXCal2]
gi|75536404|sp|Q4ULF0.1|CLPP_RICFE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67004697|gb|AAY61623.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia felis
URRWXCal2]
Length = 201
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 138/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D ++++VVAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLVVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYR---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 168
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|224030041|gb|ACN34096.1| unknown [Zea mays]
gi|414586294|tpg|DAA36865.1| TPA: ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 259
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 36 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 95
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG G R +LPN+R+MI
Sbjct: 96 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVMI 155
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 156 HQPSGGAS---------------------GQA---------------------------- 166
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHTG +I++I
Sbjct: 167 ---------SDIAIHAKEILKVRDRLNKIYAKHTGQAIDRI 198
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 36 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 70
>gi|326502578|dbj|BAJ95352.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506866|dbj|BAJ91474.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 300
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+E T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KPI +
Sbjct: 72 LVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPISL 131
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +LPN+R+MI
Sbjct: 132 YINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVMI 191
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 192 HQPSGGAQ---------------------GQA---------------------------- 202
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG +I+KI
Sbjct: 203 ---------TDIAIQAKEILKLRDRLNKIYAKHTGQNIDKI 234
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+E T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 72 LVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIA 106
>gi|83949690|ref|ZP_00958423.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
nubinhibens ISM]
gi|83837589|gb|EAP76885.1| Protease subunit of ATP-dependent Clp protease [Roseovarius
nubinhibens ISM]
Length = 203
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS+VVAQLL L++E+ K I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLVVAQLLHLEAENPSKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AG KGMR+SLPNSRIM+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIRPAVSTLVIGQAASMGSLLLTAGAKGMRYSLPNSRIMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGYQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YVKHTG +++K+
Sbjct: 135 ---------TDIMIHAEETLKLKRRLNEIYVKHTGQTLKKV 166
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 37
>gi|170720927|ref|YP_001748615.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
W619]
gi|325274289|ref|ZP_08140400.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
TJI-51]
gi|226706466|sp|B1J692.1|CLPP_PSEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|169758930|gb|ACA72246.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
putida W619]
gi|324100572|gb|EGB98307.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
TJI-51]
Length = 213
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQ+LFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|389742138|gb|EIM83325.1| hypothetical protein STEHIDRAFT_63367 [Stereum hirsutum FP-91666
SS1]
Length = 254
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 143/242 (59%), Gaps = 61/242 (25%)
Query: 23 FQGLSLGH-LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDS 81
F G L H LA + S+ + LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+
Sbjct: 26 FNGSRLSHPLASDW--SSPSANGLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDT 83
Query: 82 LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSM 141
S++ VAQLLFL++E + KPIH+YINSPGGSVT+GL IYDTMQYV PI T+CVGQA SM
Sbjct: 84 DSALTVAQLLFLEAEETSKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYCVGQASSM 143
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMAS 201
SLLLAAGEKG RH LPN+ IMIHQPSGG GQA
Sbjct: 144 GSLLLAAGEKGKRHCLPNASIMIHQPSGGAS---------------------GQA----- 177
Query: 202 LLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLS 261
TDI I A+EI+ +++ + G+Y +H G
Sbjct: 178 --------------------------------TDIAIHAKEILRIREVLTGIYQRHCGKP 205
Query: 262 IE 263
E
Sbjct: 206 TE 207
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 42/57 (73%), Gaps = 3/57 (5%)
Query: 359 FQGLSLGH-LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F G L H LA + S+ + LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 26 FNGSRLSHPLASDW--SSPSANGLVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 80
>gi|384248981|gb|EIE22464.1| ATP-dependent Clp protease proteolytic subunit [Coccomyxa
subellipsoidea C-169]
Length = 202
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/224 (50%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE T RGER++DIYSRLLRERI+ V G IDD +S++++AQLL+L+SE+ ++PI M
Sbjct: 6 LIPMVIEHTPRGERSFDIYSRLLRERIVMVNGGIDDHMSNLIIAQLLYLESENPEQPISM 65
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINS GG VTSGL IYDTMQY+ PI+T CVGQA SMASLLLAAGEKG R SLPNSRIM+
Sbjct: 66 YINSQGGVVTSGLAIYDTMQYIRNPISTLCVGQAASMASLLLAAGEKGHRRSLPNSRIML 125
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 126 HQPSGGFQ---------------------GQA---------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+I AEEI L K++N +Y KHTG S E I ++
Sbjct: 137 ---------SDIRIHAEEIARLSKRLNKIYAKHTGQSEELIEET 171
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE T RGER++DIYSRLLRERI+ V G +
Sbjct: 6 LIPMVIEHTPRGERSFDIYSRLLRERIVMVNGGID 40
>gi|254994793|ref|ZP_05276983.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Mississippi]
Length = 207
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 142/224 (63%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + G ++D+++S++VAQL+FL++E+ +K I +
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM +LLLA GE GMR++LPNSRIM+
Sbjct: 72 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +K+++N +YVKHTG S+E+I S
Sbjct: 143 ---------TDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESS 177
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + G V
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVE 46
>gi|352085686|ref|ZP_08953277.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 2APBS1]
gi|389798002|ref|ZP_10201030.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter sp.
116-2]
gi|351681627|gb|EHA64751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
sp. 2APBS1]
gi|388445897|gb|EIM01950.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter sp.
116-2]
Length = 209
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K I+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVNDQVANLIVAQMLFLESENPDKDINF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQACSM S LL AG KG R +LPNSR+MI
Sbjct: 71 YINSPGGAVTAGLAIYDTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQA EI+ +++++N LYV+HTG ++EKI
Sbjct: 142 ---------TDIEIQAREILYIRERLNKLYVQHTGQTLEKI 173
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVN 45
>gi|373450697|ref|ZP_09542668.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Wolbachia pipientis wAlbB]
gi|371932099|emb|CCE77680.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Wolbachia pipientis wAlbB]
Length = 213
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K I M
Sbjct: 8 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLL AG +G R+SLP+SRIMI
Sbjct: 68 YINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLTAGAEGKRYSLPHSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 128 HQPSGGYR---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A EI+ +KK++N +Y KHTG S++KI
Sbjct: 139 ---------TDIEIHANEILRVKKKLNQIYEKHTGNSLKKI 170
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 8 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIE 42
>gi|325292625|ref|YP_004278489.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
H13-3]
gi|335035107|ref|ZP_08528450.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
ATCC 31749]
gi|417860288|ref|ZP_12505344.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens F2]
gi|418406778|ref|ZP_12980097.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens 5A]
gi|325060478|gb|ADY64169.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium sp.
H13-3]
gi|333793538|gb|EGL64892.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium sp.
ATCC 31749]
gi|338823352|gb|EGP57320.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens F2]
gi|358007271|gb|EHJ99594.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens 5A]
Length = 210
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKHTG ++E++ K+
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKT 176
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|452824243|gb|EME31247.1| ATP-dependent Clp protease, protease subunit [Galdieria
sulphuraria]
Length = 250
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGER +DIYSRLL+ERIIC+ G I D ++S+ VAQLLFL++E+ +K ++M
Sbjct: 46 LIPMVLEQTPRGERVFDIYSRLLKERIICLNGTITDDVASLTVAQLLFLEAENPEKKVYM 105
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL +YDTMQY+ PP++T C+GQACSMASLLLAAGEKG R SLPNSRIMI
Sbjct: 106 YINSPGGSVTAGLAVYDTMQYISPPVSTICLGQACSMASLLLAAGEKGERRSLPNSRIMI 165
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG A G P S I IH
Sbjct: 166 HQPSGG----------------------------------ATG--------PASDISIH- 182
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A EI+ L+K++N LY HTG I I
Sbjct: 183 ---------------ANEILYLRKRLNELYAYHTGQDIATI 208
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGER +DIYSRLL+ERIIC+ G ++
Sbjct: 46 LIPMVLEQTPRGERVFDIYSRLLKERIICLNGTIT 80
>gi|146341127|ref|YP_001206175.1| ATP-dependent Clp protease proteolytic subunit [Bradyrhizobium sp.
ORS 278]
gi|365881471|ref|ZP_09420780.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. ORS 375]
gi|365891031|ref|ZP_09429504.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. STM 3809]
gi|367473666|ref|ZP_09473214.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. ORS 285]
gi|146193933|emb|CAL77950.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. ORS 278]
gi|365274062|emb|CCD85682.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. ORS 285]
gi|365290340|emb|CCD93311.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. ORS 375]
gi|365333056|emb|CCE02035.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Bradyrhizobium sp. STM 3809]
Length = 210
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 134/215 (62%), Gaps = 58/215 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +++++VAQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMATLIVAQLLFLEAENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C GQA SM SLLL AG K MR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQFIRPAVSTLCTGQAASMGSLLLCAGHKDMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
TDI + A+EI++LKK++N +YVKHTG
Sbjct: 142 ---------TDIMLHAQEILSLKKRLNEIYVKHTG 167
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVE 45
>gi|418296068|ref|ZP_12907912.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens CCNWGS0286]
gi|355539500|gb|EHH08738.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
tumefaciens CCNWGS0286]
Length = 210
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKHTG ++E++ K+
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKT 176
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|269959005|ref|YP_003328794.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
str. Israel]
gi|269848836|gb|ACZ49480.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma centrale
str. Israel]
Length = 215
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 142/224 (63%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + G ++D+++S++VAQL+FL++E+ +K I +
Sbjct: 20 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISL 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM +LLLA GE GMR++LPNSRIM+
Sbjct: 80 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMV 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 140 HQPSGGFR---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +K+++N +YVKHTG S+E+I S
Sbjct: 151 ---------TDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESS 185
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + G V
Sbjct: 20 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVE 54
>gi|389806651|ref|ZP_10203698.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
thiooxydans LCS2]
gi|388445303|gb|EIM01383.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
thiooxydans LCS2]
Length = 209
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER++ ++G ++D +++++VAQ+LFL+SE+ K I+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVVFLVGEVNDQVANLIVAQMLFLESENPDKDINF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQACSM S LL AG KG R +LPNSR+MI
Sbjct: 71 YINSPGGAVTAGLAIYDTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQA EI+ +++++N LYV+HTG ++EKI
Sbjct: 142 ---------TDIEIQAREILYIRERLNKLYVQHTGQTLEKI 173
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER++ ++G V+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVVFLVGEVN 45
>gi|15888588|ref|NP_354269.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
fabrum str. C58]
gi|21759066|sp|Q8UFY6.1|CLPP2_AGRT5 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|15156306|gb|AAK87054.1| ATP-dependent Clp protease, proteolytic subunit [Agrobacterium
fabrum str. C58]
Length = 210
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKHTG ++E++ K+
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKT 176
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|326492708|dbj|BAJ90210.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+E T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KPI +
Sbjct: 57 LVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIADETASLVVAQLLFLESENPLKPISL 116
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +LPN+R+MI
Sbjct: 117 YINSPGGVVTAGLAIYDTMQYIRCPVNTICIGQAASMGSLLLAAGARGERRALPNARVMI 176
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 177 HQPSGGAQ---------------------GQA---------------------------- 187
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG +I+KI
Sbjct: 188 ---------TDIAIQAKEILKLRDRLNKIYAKHTGQNIDKI 219
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+E T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 57 LVPMVVETTSRGERAYDIFSRLLKERIVCIHGPIA 91
>gi|408785974|ref|ZP_11197714.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium lupini
HPC(L)]
gi|424910122|ref|ZP_18333499.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|392846153|gb|EJA98675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408488163|gb|EKJ96477.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium lupini
HPC(L)]
Length = 210
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKHTG ++E++ K+
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEVEKT 176
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|389774765|ref|ZP_10192884.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
spathiphylli B39]
gi|388438364|gb|EIL95119.1| ATP-dependent Clp protease proteolytic subunit [Rhodanobacter
spathiphylli B39]
Length = 209
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K I+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVNDQVANLIVAQMLFLESENPDKDINF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQACSM S LL AG KG R +LPNSRIMI
Sbjct: 71 YINSPGGAVTAGLAIYDTMQFIKPNVSTMCIGQACSMGSFLLMAGAKGKRFALPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQA EI+ +++++N LYV+HTG +EKI
Sbjct: 142 ---------TDIEIQAREILYIRERLNKLYVEHTGQPLEKI 173
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVN 45
>gi|340787626|ref|YP_004753091.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
gi|340552893|gb|AEK62268.1| ATP-dependent Clp protease proteolytic subunit [Collimonas
fungivorans Ter331]
Length = 208
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+GRGER+YDIYSRLLRERII ++GP++D +++VVAQLLFL+SE+ K I +
Sbjct: 17 MVPIVIEQSGRGERSYDIYSRLLRERIIFLVGPVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P I+T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFVKPEISTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++NG+ TG SIE+I K T
Sbjct: 148 ---------SDIEIQAREILYLRERLNGILADKTGRSIEQISKDT 183
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+GRGER+YDIYSRLLRERII ++GPV+
Sbjct: 17 MVPIVIEQSGRGERSYDIYSRLLRERIIFLVGPVN 51
>gi|86137328|ref|ZP_01055905.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
MED193]
gi|85825663|gb|EAQ45861.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
MED193]
Length = 202
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGFQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YVKHTG ++K+
Sbjct: 135 ---------TDIMIHAEETLKLKRRLNEIYVKHTGQELDKV 166
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 37
>gi|125582984|gb|EAZ23915.1| hypothetical protein OsJ_07636 [Oryza sativa Japonica Group]
Length = 318
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+ + GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPVHL 132
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +LPN+R+MI
Sbjct: 133 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMI 192
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 193 HQPSGGAQ---------------------GQA---------------------------- 203
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG I+KI
Sbjct: 204 ---------TDIAIQAKEILKLRDRLNKIYQKHTGQEIDKI 235
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+ + GP++
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIA 107
>gi|56416580|ref|YP_153654.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. St. Maries]
gi|222474947|ref|YP_002563362.1| ATP-dependent Clp protease proteolytic subunit [Anaplasma marginale
str. Florida]
gi|67460191|sp|Q5PBD0.1|CLPP_ANAMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763783|sp|B9KHZ4.1|CLPP_ANAMF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56387812|gb|AAV86399.1| ATP-dependent clp protease proteolytic subunit [Anaplasma marginale
str. St. Maries]
gi|222419083|gb|ACM49106.1| ATP-dependent clp protease proteolytic subunit (clpP) [Anaplasma
marginale str. Florida]
Length = 215
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 142/224 (63%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + G ++D+++S++VAQL+FL++E+ +K I +
Sbjct: 20 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVEDNMASLIVAQLVFLEAENPEKDISL 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM +LLLA GE GMR++LPNSRIM+
Sbjct: 80 YINSPGGVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGALLLAGGEPGMRYALPNSRIMV 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 140 HQPSGGFR---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +K+++N +YVKHTG S+E+I S
Sbjct: 151 ---------TDIEIHAREILEIKRRLNEIYVKHTGKSLEEIESS 185
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + G V
Sbjct: 20 LVPMVVEQTSRGERAYDIYSRLLKERIIFITGTVE 54
>gi|399992448|ref|YP_006572688.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
gi|398657003|gb|AFO90969.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
gallaeciensis DSM 17395 = CIP 105210]
Length = 210
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LKK++N +YVKHTG +KI
Sbjct: 143 ---------TDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|400754134|ref|YP_006562502.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
gallaeciensis 2.10]
gi|398653287|gb|AFO87257.1| ATP-dependent Clp protease proteolytic subunit [Phaeobacter
gallaeciensis 2.10]
Length = 210
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LKK++N +YVKHTG +KI
Sbjct: 143 ---------TDIMIHAEETLKLKKRLNEIYVKHTGQEYDKI 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|125540417|gb|EAY86812.1| hypothetical protein OsI_08189 [Oryza sativa Indica Group]
Length = 318
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+ + GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPVHL 132
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +LPN+R+MI
Sbjct: 133 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMI 192
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 193 HQPSGGAQ---------------------GQA---------------------------- 203
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG I+KI
Sbjct: 204 ---------TDIAIQAKEILKLRDRLNKIYQKHTGQEIDKI 235
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+ + GP++
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIA 107
>gi|115447465|ref|NP_001047512.1| Os02g0634500 [Oryza sativa Japonica Group]
gi|49388184|dbj|BAD25310.1| unknown protein [Oryza sativa Japonica Group]
gi|113537043|dbj|BAF09426.1| Os02g0634500 [Oryza sativa Japonica Group]
gi|215692767|dbj|BAG88235.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 298
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+ + GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPVHL 132
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG +G R +LPN+R+MI
Sbjct: 133 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMI 192
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 193 HQPSGGAQ---------------------GQA---------------------------- 203
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHTG I+KI
Sbjct: 204 ---------TDIAIQAKEILKLRDRLNKIYQKHTGQEIDKI 235
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+ + GP++
Sbjct: 73 LVPMVIETTSRGERAYDIFSRLLKERIVLIHGPIA 107
>gi|312081179|ref|XP_003142917.1| hypothetical protein LOAG_07336 [Loa loa]
gi|307761922|gb|EFO21156.1| Clp protease [Loa loa]
Length = 218
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 141/232 (60%), Gaps = 58/232 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
HS+ L + +P+V++Q GR ER YDIYSRLL++RI+CVM PI+D +++ V+AQLLFLQ E
Sbjct: 17 HSSLLRQQTIPMVVDQDGRVERVYDIYSRLLKDRIVCVMTPINDQVAASVIAQLLFLQGE 76
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
S+K I+MYI PGGSVT+GLGIYDTMQY+ P+ATWC+GQA SM SLLL+AG KGMR S
Sbjct: 77 SAKSTINMYIMCPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTS 136
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPN+RIM+HQPSGG + GQA
Sbjct: 137 LPNARIMVHQPSGGAE---------------------GQA-------------------- 155
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI I+AEEI LK ++N +Y HTG I+ I ++
Sbjct: 156 -----------------SDILIRAEEIGRLKTRLNKIYAIHTGQDIKIIEEA 190
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 35/43 (81%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
HS+ L + +P+V++Q GR ER YDIYSRLL++RI+CVM P++
Sbjct: 17 HSSLLRQQTIPMVVDQDGRVERVYDIYSRLLKDRIVCVMTPIN 59
>gi|126741244|ref|ZP_01756923.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
SK209-2-6]
gi|126717649|gb|EBA14372.1| Protease subunit of ATP-dependent Clp protease [Roseobacter sp.
SK209-2-6]
Length = 210
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YVKHTG ++K+
Sbjct: 143 ---------TDIMIHAEETLKLKRRLNEIYVKHTGQELDKV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|384921302|ref|ZP_10021287.1| ATP-dependent Clp protease proteolytic subunit [Citreicella sp.
357]
gi|384464817|gb|EIE49377.1| ATP-dependent Clp protease proteolytic subunit [Citreicella sp.
357]
Length = 210
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLLAAGE GMR SLPNSRIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLAAGESGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I AEE + LK+++N +YVKH G ++E++ K+
Sbjct: 143 ---------TDIMIHAEETLKLKRRLNEIYVKHCGRTLEEVEKA 177
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPV 45
>gi|114767020|ref|ZP_01445928.1| Protease subunit of ATP-dependent Clp protease [Pelagibaca
bermudensis HTCC2601]
gi|114540804|gb|EAU43868.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
HTCC2601]
Length = 210
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSRIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LK+++N +YV+HTG ++E +
Sbjct: 143 ---------TDIMIHAEETLKLKRRLNEIYVRHTGQTLENV 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPV 45
>gi|226533042|ref|NP_001147355.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|194700894|gb|ACF84531.1| unknown [Zea mays]
gi|195610476|gb|ACG27068.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|413918966|gb|AFW58898.1| ATP-dependent Clp protease proteolytic subunit isoform 1 [Zea mays]
gi|413918967|gb|AFW58899.1| ATP-dependent Clp protease proteolytic subunit isoform 2 [Zea mays]
Length = 260
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 37 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 96
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG G R +LPN+R+MI
Sbjct: 97 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGASGERRALPNARVMI 156
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 157 HQPSGGAS---------------------GQA---------------------------- 167
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHTG +I++I
Sbjct: 168 ---------SDIAIHAKEILKVRDRLNKIYAKHTGQAIDRI 199
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 37 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 71
>gi|392891446|ref|NP_001254239.1| Protein CLPP-1, isoform d [Caenorhabditis elegans]
gi|284018074|sp|Q27539.2|CLPP1_CAEEL RecName: Full=ATP-dependent Clp protease proteolytic subunit 1,
mitochondrial; AltName: Full=Endopeptidase Clp; Flags:
Precursor
gi|371570792|emb|CCF23347.1| Protein CLPP-1, isoform d [Caenorhabditis elegans]
Length = 221
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/131 (70%), Positives = 111/131 (84%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
SR +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES KKP
Sbjct: 22 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKP 81
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IHMYINSPGGSVT+GL IYDT+Q + P++TW +GQA SM SLLL AGEKGMR +LPNSR
Sbjct: 82 IHMYINSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSR 141
Query: 162 IMIHQPSGGVQ 172
IM+HQPSGG Q
Sbjct: 142 IMVHQPSGGAQ 152
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
SR +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 22 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 61
>gi|383317431|ref|YP_005378273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Frateuria
aurantia DSM 6220]
gi|379044535|gb|AFC86591.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Frateuria
aurantia DSM 6220]
Length = 209
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D +++V++AQ+LFL+SE+ K IH+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVNDQVANVLIAQMLFLESENPDKDIHL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ ++T CVGQACS ASLLL AG KG R SLPNSR+MI
Sbjct: 71 YINSPGGVVTAGLAIYDTMQYIKCDVSTMCVGQACSAASLLLMAGAKGKRFSLPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 131 HQPSGGAR---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQA+EI+ L++++N +YV HTG +EKI +
Sbjct: 142 ---------TDIEIQAQEILYLRRKLNQIYVDHTGQPLEKIERD 176
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVN 45
>gi|392891448|ref|NP_001254240.1| Protein CLPP-1, isoform a [Caenorhabditis elegans]
gi|3881896|emb|CAA88886.1| Protein CLPP-1, isoform a [Caenorhabditis elegans]
Length = 206
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 92/131 (70%), Positives = 111/131 (84%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
SR +P VI+ G+GER YDIYSRLLR+RI+C+M P+DD ++S ++AQLLFLQSES KKP
Sbjct: 7 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSESGKKP 66
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IHMYINSPGGSVT+GL IYDT+Q + P++TW +GQA SM SLLL AGEKGMR +LPNSR
Sbjct: 67 IHMYINSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSALPNSR 126
Query: 162 IMIHQPSGGVQ 172
IM+HQPSGG Q
Sbjct: 127 IMVHQPSGGAQ 137
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
SR +P VI+ G+GER YDIYSRLLR+RI+C+M PV +
Sbjct: 7 SRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDF 46
>gi|409050974|gb|EKM60450.1| hypothetical protein PHACADRAFT_246404, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 271
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 117/134 (87%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+ ++ LVP+VIEQTGRGER+YDI+SRLLRER++ + GPI D+ S+++V+QLLFL++E
Sbjct: 39 SSPVTGNLVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPIRDTDSALLVSQLLFLEAEE 98
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
+ KPIH+YINSPGGSVT+GL +YDT+QYV PI T+CVGQACSM SLLLAAGEKG RH+L
Sbjct: 99 TSKPIHLYINSPGGSVTAGLAVYDTLQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHAL 158
Query: 158 PNSRIMIHQPSGGV 171
PNS IMIHQPSGG
Sbjct: 159 PNSSIMIHQPSGGA 172
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/104 (59%), Positives = 77/104 (74%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL +YDT+QYV PI T+CVGQACSM SLLLAAGEKG RH+LPNS IM
Sbjct: 105 LYINSPGGSVTAGLAVYDTLQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPNSSIM 164
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
IHQPSGG GQA+DI I A EI+ +++ + +Y +H G S E +
Sbjct: 165 IHQPSGGASGQASDIAIHAREILRVREVLTRIYQRHCGKSEESV 208
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 36/41 (87%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S+ ++ LVP+VIEQTGRGER+YDI+SRLLRER++ + GP+
Sbjct: 39 SSPVTGNLVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPI 79
>gi|225627583|ref|ZP_03785620.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
Cudo]
gi|237815533|ref|ZP_04594530.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
str. 2308 A]
gi|225617588|gb|EEH14633.1| ATP-dependent Clp protease proteolytic subunit [Brucella ceti str.
Cudo]
gi|237788831|gb|EEP63042.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
str. 2308 A]
Length = 247
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/265 (41%), Positives = 154/265 (58%), Gaps = 65/265 (24%)
Query: 4 KTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIY 63
+ C+ + ++++ P I+Q + +T + LVP+V+EQT RGERAYDI+
Sbjct: 15 RNALCMEVRRFNLVISPLIYQRPIMRDPIETVMN-------LVPMVVEQTNRGERAYDIF 67
Query: 64 SRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123
SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+MYINSPGG VTSG+ IYDTM
Sbjct: 68 SRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTM 127
Query: 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQY 183
Q++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+HQPSGG Q
Sbjct: 128 QFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQ----------- 176
Query: 184 VLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEI 243
GQA +DI+ A++I
Sbjct: 177 ----------GQA-------------------------------------SDIERHAQDI 189
Query: 244 INLKKQINGLYVKHTGLSIEKIGKS 268
I +K+++N +YVKHTG + I ++
Sbjct: 190 IKMKRRLNEIYVKHTGRDYDTIERT 214
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 11/92 (11%)
Query: 324 IGAWFVNYSEATTMKKKTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVP 383
+G +F +E + + C+ + ++++ P I+Q + +T + LVP
Sbjct: 3 VGGYFAPLAE----QGRNALCMEVRRFNLVISPLIYQRPIMRDPIETVMN-------LVP 51
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 52 MVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 83
>gi|328543681|ref|YP_004303790.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
SL003B-26A1]
gi|326413425|gb|ADZ70488.1| ATP-dependent Clp protease proteolytic subunit [Polymorphum gilvum
SL003B-26A1]
Length = 211
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/228 (45%), Positives = 141/228 (61%), Gaps = 58/228 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GPI+D L+++V AQLL+L++E+ K
Sbjct: 8 FTNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPIEDQLATLVCAQLLYLEAENPNK 67
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLLAAG+KGMR SLPN+
Sbjct: 68 EIALYINSPGGLVTSGLAIYDTMQFIRPEVSTLCIGQAASMGSLLLAAGQKGMRFSLPNA 127
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG + GQA
Sbjct: 128 RVMVHQPSGGFR---------------------GQAA----------------------- 143
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI + A+EI+ LK+++N +YVKHTG S++ + ++
Sbjct: 144 --------------DIMLHAQEILKLKRRLNDIYVKHTGQSLDSVEEA 177
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GP+
Sbjct: 8 FTNTLVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPIE 46
>gi|254469734|ref|ZP_05083139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|374331792|ref|YP_005081976.1| ATP-dependent Clp protease proteolytic subunit [Pseudovibrio sp.
FO-BEG1]
gi|211961569|gb|EEA96764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudovibrio
sp. JE062]
gi|359344580|gb|AEV37954.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Pseudovibrio sp. FO-BEG1]
Length = 211
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 141/228 (61%), Gaps = 58/228 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D+++++V +QLL+L++E+ K
Sbjct: 8 FTNSLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDTMATLVCSQLLYLEAENPNK 67
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGG VTSGL IYDTMQ++ P I+T C+GQA SM SLLLAAGEKGMR SLPNS
Sbjct: 68 EIALYINSPGGVVTSGLAIYDTMQFIRPKISTLCIGQAASMGSLLLAAGEKGMRFSLPNS 127
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG + GQA
Sbjct: 128 RVMVHQPSGGFR---------------------GQAA----------------------- 143
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI + A+EI+ LK+++N +YV HTG ++E + ++
Sbjct: 144 --------------DIMLHAQEILKLKRRLNEIYVSHTGQTLEAVEEA 177
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 8 FTNSLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVE 46
>gi|90417350|ref|ZP_01225275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HTCC2207]
gi|90330792|gb|EAS46061.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2207]
Length = 213
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 19 LVPMVVEQTSRGERAYDIYSRLLKERVIFLVGQVEDHMANLIVAQMLFLESENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLAAG +G R+ LPNSR MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTMCIGQAASMGAFLLAAGAEGKRYCLPNSRTMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 139 HQPSGGAQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQ++EI+ +K ++N L KHTG S+EK+ + T
Sbjct: 150 ---------TDIHIQSQEILKIKSRLNNLMAKHTGQSVEKVTEDT 185
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDIYSRLL+ER+I ++G V
Sbjct: 19 LVPMVVEQTSRGERAYDIYSRLLKERVIFLVGQV 52
>gi|152980689|ref|YP_001353221.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
sp. Marseille]
gi|226706516|sp|A6SY74.1|CLPP_JANMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151280766|gb|ABR89176.1| protease subunit of ATP-dependent Clp proteases [Janthinobacterium
sp. Marseille]
Length = 210
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D +++++VAQLLFL+SE+ K I +
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFLESENPDKDISL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C G A SM + LLAAGEKG R SLPNSRIMI
Sbjct: 79 YINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGAQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG S+E+I K T
Sbjct: 150 ---------SDIEIQAREILYLRERLNAILAERTGKSVEEIAKDT 185
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 53
>gi|402218814|gb|EJT98889.1| hypothetical protein DACRYDRAFT_24016 [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 111/127 (87%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGER+YDIYSRLLRER+I + GP+ D+L+SV VAQLLFL++E + KPIH+
Sbjct: 45 LVPIVIEQTGRGERSYDIYSRLLRERVIMLAGPVTDTLASVTVAQLLFLEAEEAMKPIHL 104
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTM+YV PI T+C+GQA SM SLLLAAGEKG R +LPN+ IMI
Sbjct: 105 YINSPGGSVTAGMAIYDTMRYVTSPIYTYCMGQAASMGSLLLAAGEKGKRRALPNATIMI 164
Query: 165 HQPSGGV 171
HQPSGG
Sbjct: 165 HQPSGGA 171
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQTGRGER+YDIYSRLLRER+I + GPV+
Sbjct: 45 LVPIVIEQTGRGERSYDIYSRLLRERVIMLAGPVT 79
>gi|444308443|ref|ZP_21144088.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
intermedium M86]
gi|443488026|gb|ELT50783.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
intermedium M86]
Length = 209
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRYALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|418939670|ref|ZP_13493060.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp.
PDO1-076]
gi|375053611|gb|EHS50000.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp.
PDO1-076]
Length = 211
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 140/221 (63%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D+++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDNMASLVCAQLLFLEAENPKKEIAI 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A +II +K+++N +YVKHTG ++E++
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEV 173
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|254485779|ref|ZP_05098984.1| Clp protease [Roseobacter sp. GAI101]
gi|214042648|gb|EEB83286.1| Clp protease [Roseobacter sp. GAI101]
Length = 215
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YVKHTG S+EK+
Sbjct: 143 ---------TDIMIHAQETQKLKTRLNEIYVKHTGQSLEKV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPV 45
>gi|115459516|ref|NP_001053358.1| Os04g0525600 [Oryza sativa Japonica Group]
gi|113564929|dbj|BAF15272.1| Os04g0525600 [Oryza sativa Japonica Group]
gi|215768496|dbj|BAH00725.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 309
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 86 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 145
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG +G R +LPN+R+MI
Sbjct: 146 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMI 205
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 206 HQPSGGAS---------------------GQA---------------------------- 216
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHT +I++I
Sbjct: 217 ---------SDIAIHAKEILKVRDRLNKIYAKHTSQAIDRI 248
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 86 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 120
>gi|326403118|ref|YP_004283199.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
multivorum AIU301]
gi|338981066|ref|ZP_08632302.1| ClpP [Acidiphilium sp. PM]
gi|325049979|dbj|BAJ80317.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
multivorum AIU301]
gi|338208032|gb|EGO95931.1| ClpP [Acidiphilium sp. PM]
Length = 209
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP+ D + S++ AQLLFL+SE+ K I
Sbjct: 13 LVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLESENPSKEIAF 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLAAGEKG R +LPNSRIM+
Sbjct: 73 YINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKRFALPNSRIMV 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 133 HQPSGGAQ---------------------GQA---------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+IQA EI+ L++++N +YV HTG S+E I ++
Sbjct: 144 ---------SDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQA 178
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 13 LVPMVVEQTARGERSYDIFSRLLKERIIFLTGPV 46
>gi|239831859|ref|ZP_04680188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
intermedium LMG 3301]
gi|239824126|gb|EEQ95694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
intermedium LMG 3301]
Length = 230
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 32 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 91
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 92 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRYALPNARIMV 151
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 152 HQPSGGFQ---------------------GQA---------------------------- 162
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E I ++
Sbjct: 163 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERT 197
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 32 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 66
>gi|449550407|gb|EMD41371.1| hypothetical protein CERSUDRAFT_109969 [Ceriporiopsis subvermispora
B]
Length = 247
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 112/127 (88%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++ VAQLLFL++E + KPIH+
Sbjct: 44 LVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPIGDNDSALTVAQLLFLEAEEASKPIHL 103
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGGSVT+GL IYDT+QYV PI T+CVGQACSM SLLLAAGEKG RH+LP+S IMI
Sbjct: 104 YVNSPGGSVTAGLAIYDTVQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPHSSIMI 163
Query: 165 HQPSGGV 171
HQPSGG
Sbjct: 164 HQPSGGA 170
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVPIVIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 44 LVPIVIEQTGRGERSYDIFSRLLRERVIMLYGPI 77
>gi|390449294|ref|ZP_10234903.1| ATP-dependent Clp protease proteolytic subunit [Nitratireductor
aquibiodomus RA22]
gi|389664399|gb|EIM75894.1| ATP-dependent Clp protease proteolytic subunit [Nitratireductor
aquibiodomus RA22]
Length = 210
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 153/268 (57%), Gaps = 70/268 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GPI+D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIQPPVSTLCIGQAASMGSLLLCAGHKDMRLATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS-TVCFYVLHDPYICFW 283
+DI+ A++II LK+++N +YVKHTG E I K+ ++ D + F
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEVYVKHTGQDYETIEKTLDRDHFMTSDEALSFG 192
Query: 284 INGLYVKHTGLSIEKIGKSTNLTEELSS 311
+ I+K+ S + TE+ S
Sbjct: 193 L-----------IDKVVSSRDATEKASD 209
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIE 45
>gi|222148264|ref|YP_002549221.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium vitis
S4]
gi|221735252|gb|ACM36215.1| ATP-dependent Clp protease proteolytic subunit ClpP [Agrobacterium
vitis S4]
Length = 210
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMASLVCAQLLFLEAENPKKEIAI 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T CVGQA SM SLLLAAGEKGMR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A +II +K+++N +YVKHTG ++E++
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTLEEV 173
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|404319233|ref|ZP_10967166.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
anthropi CTS-325]
Length = 209
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRYALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|413923166|gb|AFW63098.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 395
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 168 LVPMVIETTSRGERAYDIFSRLLKERIVCINGPIADDTASLVVAQLLFLESENPLKPVHL 227
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 228 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 287
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 288 HQPSGGAQ---------------------GQA---------------------------- 298
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHT I+KI
Sbjct: 299 ---------TDIAIQAKEILKLRDRLNKIYQKHTRQPIDKI 330
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 168 LVPMVIETTSRGERAYDIFSRLLKERIVCINGPIA 202
>gi|148259928|ref|YP_001234055.1| ATP-dependent Clp protease proteolytic subunit [Acidiphilium
cryptum JF-5]
gi|146401609|gb|ABQ30136.1| ATP-dependent Clp protease proteolytic subunit ClpP [Acidiphilium
cryptum JF-5]
Length = 211
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP+ D + S++ AQLLFL+SE+ K I
Sbjct: 15 LVPMVVEQTARGERSYDIFSRLLKERIIFLTGPVYDQVGSLIAAQLLFLESENPSKEIAF 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLAAGEKG R +LPNSRIM+
Sbjct: 75 YINSPGGVVSAGLAIYDTMQYIKSPVSTVCIGQAASMGSLLLAAGEKGKRFALPNSRIMV 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 135 HQPSGGAQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+IQA EI+ L++++N +YV HTG S+E I ++
Sbjct: 146 ---------SDIEIQAREILTLRRRLNDIYVTHTGQSLEAIEQA 180
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 15 LVPMVVEQTARGERSYDIFSRLLKERIIFLTGPV 48
>gi|38344435|emb|CAE05641.2| OSJNBa0038O10.7 [Oryza sativa Japonica Group]
gi|116310954|emb|CAH67891.1| OSIGBa0153E02-OSIGBa0093I20.20 [Oryza sativa Indica Group]
gi|125549084|gb|EAY94906.1| hypothetical protein OsI_16707 [Oryza sativa Indica Group]
Length = 259
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 36 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHL 95
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG +G R +LPN+R+MI
Sbjct: 96 YINSPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMI 155
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 156 HQPSGGAS---------------------GQA---------------------------- 166
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHT +I++I
Sbjct: 167 ---------SDIAIHAKEILKVRDRLNKIYAKHTSQAIDRI 198
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 36 LVPMVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 70
>gi|116243166|sp|Q1GGF6.2|CLPP_SILST RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 210
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
+ T LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+
Sbjct: 5 TETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAEN 64
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
K I MYINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SL
Sbjct: 65 PSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSL 124
Query: 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 217
PNSR+M+HQPSGG Q GQA
Sbjct: 125 PNSRVMVHQPSGGYQ---------------------GQA--------------------- 142
Query: 218 SRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I AEE + LK+++N +YVKHTG + I K+
Sbjct: 143 ----------------TDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKA 177
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ T LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 5 TETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|154253670|ref|YP_001414494.1| endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
gi|154157620|gb|ABS64837.1| Endopeptidase Clp [Parvibaculum lavamentivorans DS-1]
Length = 213
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+E II V GP++D ++ +V AQLLFL++E+ KK I M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKEHIIFVAGPVEDGMAMLVTAQLLFLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ PP++T C+GQA SM SLLLAAGEKGMR +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQHIRPPVSTVCMGQAASMGSLLLAAGEKGMRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+I A E I +++++N +Y KHTG S++ +
Sbjct: 142 ---------SDIEIHARETIAIRERLNNIYCKHTGQSLKAV 173
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+E II V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKEHIIFVAGPVE 45
>gi|317050717|ref|YP_004111833.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurispirillum indicum S5]
gi|316945801|gb|ADU65277.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfurispirillum indicum S5]
Length = 196
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 138/226 (61%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PLVPIV+EQT RGER+YDIYSRLL++RI+ + IDD +S+V++AQLLFL++E +K I
Sbjct: 2 PLVPIVVEQTARGERSYDIYSRLLKDRIVFLGTQIDDQISNVIIAQLLFLEAEDPEKDIF 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM ++LLAAGEKG R +LP+SRIM
Sbjct: 62 LYINSPGGVVTAGMAIYDTMQYIRPKVSTICVGQAASMGAVLLAAGEKGKRFALPHSRIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPLGGAQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA EI+ +K+ +N + V+HTG +EKI + T
Sbjct: 134 ----------TDIEIQAREILRIKEMLNDILVRHTGADLEKIQRDT 169
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 28/29 (96%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERII 408
PLVPIV+EQT RGER+YDIYSRLL++RI+
Sbjct: 2 PLVPIVVEQTARGERSYDIYSRLLKDRIV 30
>gi|42520204|ref|NP_966119.1| ATP-dependent Clp protease proteolytic subunit [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|60389690|sp|Q73I59.1|CLPP_WOLPM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|42409942|gb|AAS14053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 208
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K I M
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPNKDICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG KG R+SLP+SRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA +
Sbjct: 123 HQPSGGYH---------------------GQATDI------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+I A EI+ +KK++N +Y KHTG S++KI
Sbjct: 137 ------------EIHANEILRVKKKLNQIYEKHTGNSLKKI 165
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIE 37
>gi|168031792|ref|XP_001768404.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680329|gb|EDQ66766.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 201
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLL+L+SE KPIH+YIN
Sbjct: 1 MVIEHTSRGERAYDIFSRLLKERIVCIHGPISDDTASLVVAQLLYLESEHPDKPIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+GL IYDTMQY+ P++T CVGQA SM SLLLAAG+ G R SLPN+R+MIHQP
Sbjct: 61 SPGGVVTAGLAIYDTMQYIRSPVSTLCVGQAASMGSLLLAAGQPGERRSLPNARVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG GQA
Sbjct: 121 SGGAS---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI IQA EI++++ +++ LYVKHTG + EKI S
Sbjct: 129 ------SDIAIQAREILDMRARLSRLYVKHTGHTYEKIESS 163
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VIE T RGERAYDI+SRLL+ERI+C+ GP+S
Sbjct: 1 MVIEHTSRGERAYDIFSRLLKERIVCIHGPIS 32
>gi|153009536|ref|YP_001370751.1| ATP-dependent Clp protease proteolytic subunit [Ochrobactrum
anthropi ATCC 49188]
gi|151561424|gb|ABS14922.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ochrobactrum
anthropi ATCC 49188]
Length = 230
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 32 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 91
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 92 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGQRYALPNARIMV 151
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 152 HQPSGGFQ---------------------GQA---------------------------- 162
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E I ++
Sbjct: 163 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYETIERT 197
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 32 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 66
>gi|58696873|ref|ZP_00372388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Drosophila simulans]
gi|58699505|ref|ZP_00374232.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630255|ref|YP_002727046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
wRi]
gi|254763810|sp|C0R2W3.1|CLPP_WOLWR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|58533978|gb|EAL58250.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58536916|gb|EAL60096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592236|gb|ACN95255.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia sp.
wRi]
Length = 208
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K I M
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG KG R+SLP+SRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA +
Sbjct: 123 HQPSGGYH---------------------GQATDI------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+I A EI+ +KK++N +Y KHTG S++KI
Sbjct: 137 ------------EIHANEILRVKKKLNQIYEKHTGNSLKKI 165
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIE 37
>gi|259416932|ref|ZP_05740852.1| Clp protease [Silicibacter sp. TrichCH4B]
gi|259348371|gb|EEW60148.1| Clp protease [Silicibacter sp. TrichCH4B]
Length = 218
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
+ T LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+
Sbjct: 13 TETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAEN 72
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
K I MYINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SL
Sbjct: 73 PSKEISMYINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSL 132
Query: 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 217
PNSR+M+HQPSGG Q GQA
Sbjct: 133 PNSRVMVHQPSGGYQ---------------------GQA--------------------- 150
Query: 218 SRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I AEE + LK+++N +YVKHTG + I K+
Sbjct: 151 ----------------TDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKA 185
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ T LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 13 TETYMNTLVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 53
>gi|442319289|ref|YP_007359310.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
gi|441486931|gb|AGC43626.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
Length = 206
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 141/230 (61%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDIYSRLL++RII + IDD +++V+VAQLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIIMLGTEIDDDVANVIVAQLLFLESEDPDKDINIY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQYV PP++T CVGQA SM ++LL AG KG R++LP+SRIMIH
Sbjct: 66 INSPGGSVTAGMAIYDTMQYVKPPVSTICVGQAASMGAVLLLAGTKGKRYALPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ +K ++N L VKHTG SIE++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFM 177
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VP VIEQT RGER+YDIYSRLL++RII +
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIIML 34
>gi|337269330|ref|YP_004613385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
opportunistum WSM2075]
gi|336029640|gb|AEH89291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
opportunistum WSM2075]
Length = 209
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N +YVKHTG S E+I K+
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEVYVKHTGKSYEEIEKT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|254476195|ref|ZP_05089581.1| Clp protease [Ruegeria sp. R11]
gi|214030438|gb|EEB71273.1| Clp protease [Ruegeria sp. R11]
Length = 202
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEPGMRFSLPNSRVMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGFQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE + LKK++N +YVKHTG + I
Sbjct: 135 ---------TDIMIHAEETLKLKKRLNEIYVKHTGQDYDSI 166
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 37
>gi|197117660|ref|YP_002138087.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
bemidjiensis Bem]
gi|226706452|sp|B5EI27.1|CLPP_GEOBB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|197087020|gb|ACH38291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
bemidjiensis Bem]
Length = 199
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + G IDD+++++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM+Y+ P++T CVGQA SM + LL+ GEKG R+SL NSRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +K Q+N L +HTG S+EK+ T Y +
Sbjct: 133 ---------TDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFM 174
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + G +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGID 36
>gi|167032910|ref|YP_001668141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
GB-1]
gi|189082463|sp|B0KJG6.1|CLPP_PSEPG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166859398|gb|ABY97805.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
putida GB-1]
Length = 213
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQ+LFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQMLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI A+EI+++K ++N L HTG +E I + T
Sbjct: 150 ---------TDIQIHAQEILSIKARLNELLAYHTGQDLETIQRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|408379474|ref|ZP_11177068.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
albertimagni AOL15]
gi|407746958|gb|EKF58480.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
albertimagni AOL15]
Length = 211
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 139/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D+++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDTMASLVCAQLLFLEAENPKKEIAI 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLLAAGEKGMR + PNSRIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPAVSTLCIGQAASMGSLLLAAGEKGMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A +II +K+++N +YVKHTG + +++
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHTGRTYDEV 173
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVE 45
>gi|241116836|ref|XP_002401631.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
gi|215493175|gb|EEC02816.1| ATP-dependent Clp protease, proteolytic subunit, putative [Ixodes
scapularis]
Length = 205
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 8 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDIYMY 67
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +T+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 68 INSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 127
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 128 QPSGGYK---------------------GQA----------------------------- 137
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 138 --------TDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKS 172
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQT RGERAYDIYSRLL+ERII V V
Sbjct: 8 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVE 41
>gi|402773762|ref|YP_006593299.1| ATP-dependent Clp protease proteolytic subunit [Methylocystis sp.
SC2]
gi|401775782|emb|CCJ08648.1| ATP-dependent Clp protease proteolytic subunit [Methylocystis sp.
SC2]
Length = 211
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 139/227 (61%), Gaps = 58/227 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S+ L+P VIE T RGER +DIYSRLLRERII V GPI+D ++SV++AQLLFL+SE+ KK
Sbjct: 9 SQYLIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLESENPKKE 68
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I +YINSPGG VTSGL IYDT+Q++ P ++T CVGQA SM SLLLAAG G+R++LPN+R
Sbjct: 69 ISLYINSPGGVVTSGLAIYDTIQFIKPKVSTLCVGQAASMGSLLLAAGADGLRYALPNAR 128
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+M+HQPSGG Q GQA
Sbjct: 129 VMLHQPSGGFQ---------------------GQA------------------------- 142
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DIQ AE+I+ +KK++N +YV+HTG E I ++
Sbjct: 143 ------------SDIQRHAEDILKVKKRLNDIYVRHTGKDYETIERT 177
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S+ L+P VIE T RGER +DIYSRLLRERII V GP+
Sbjct: 9 SQYLIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIE 46
>gi|99081368|ref|YP_613522.1| ATP-dependent Clp protease proteolytic subunit [Ruegeria sp.
TM1040]
gi|99037648|gb|ABF64260.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ruegeria sp.
TM1040]
Length = 218
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/224 (48%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 20 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 80 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 140 HQPSGGYQ---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I AEE + LK+++N +YVKHTG + I K+
Sbjct: 151 ---------TDIMIHAEETLKLKRRLNEIYVKHTGQDYDTIEKA 185
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 20 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 53
>gi|226529931|ref|NP_001141255.1| uncharacterized protein LOC100273342 [Zea mays]
gi|194703568|gb|ACF85868.1| unknown [Zea mays]
Length = 304
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCINGPIADDTASLVVAQLLFLESENPLKPVHL 136
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 137 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 196
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 197 HQPSGGAQ---------------------GQA---------------------------- 207
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ L+ ++N +Y KHT I+KI
Sbjct: 208 ---------TDIAIQAKEILKLRDRLNKIYQKHTRQPIDKI 239
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCINGPIA 111
>gi|237747781|ref|ZP_04578261.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
gi|229379143|gb|EEO29234.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacter
formigenes OXCC13]
Length = 207
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 143/237 (60%), Gaps = 60/237 (25%)
Query: 35 FHHSATLSRPL--VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
F SA +R L +P+VIEQ+GRGERAYDIYSRLL+ERI+ ++GP+ D ++++VAQLLF
Sbjct: 4 FRDSALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLF 63
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
L+SE+ K I +YINSPGGSV++G+ IYDTMQ++ P ++T C G A SM + LLAAGEKG
Sbjct: 64 LESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKG 123
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
R SLPNSRIMIHQPSGG Q GQA
Sbjct: 124 KRFSLPNSRIMIHQPSGGAQ---------------------GQA---------------- 146
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ L++++NG+ +TG SIE++ + T
Sbjct: 147 ---------------------TDIEIHAREILYLRERLNGILADNTGKSIEQVARDT 182
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%), Gaps = 2/46 (4%)
Query: 371 FHHSATLSRPL--VPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F SA +R L +P+VIEQ+GRGERAYDIYSRLL+ERI+ ++GPV
Sbjct: 4 FRDSALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPV 49
>gi|256828014|ref|YP_003156742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
gi|256577190|gb|ACU88326.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfomicrobium baculatum DSM 4028]
Length = 198
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 141/235 (60%), Gaps = 58/235 (24%)
Query: 49 VIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINS 108
VIE TGRGER YDIYSRLL++RI+ + PIDD +++ + AQLLFL+SE+ +K I+MYINS
Sbjct: 8 VIENTGRGERMYDIYSRLLKDRIVLLGTPIDDHVANSICAQLLFLESENPEKQIYMYINS 67
Query: 109 PGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 168
PGG+VT+G+ IYDTMQY+ P+AT C+GQA SMA++LLAAGEKGMR++LP+SRIMIHQP
Sbjct: 68 PGGAVTAGMAIYDTMQYISAPVATLCIGQAASMAAVLLAAGEKGMRYTLPHSRIMIHQPM 127
Query: 169 GGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228
GG Q GQA
Sbjct: 128 GGFQ---------------------GQA-------------------------------- 134
Query: 229 VQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283
TDI IQA+EII L+ ++NG+ HTG ++EK+ + T Y + C +
Sbjct: 135 -----TDIAIQAKEIIRLRGELNGILANHTGQTLEKVEQDTERDYFMSGEEACAY 184
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 32/45 (71%), Gaps = 6/45 (13%)
Query: 385 VIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFANDSIC 429
VIE TGRGER YDIYSRLL++RI+ ++G PI AN SIC
Sbjct: 8 VIENTGRGERMYDIYSRLLKDRIV-LLGT----PIDDHVAN-SIC 46
>gi|433775722|ref|YP_007306189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
australicum WSM2073]
gi|433667737|gb|AGB46813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
australicum WSM2073]
Length = 209
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N +YVKHTG S E I K+
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEVYVKHTGKSYEDIEKT 176
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|148558952|ref|YP_001259031.1| ATP-dependent Clp protease proteolytic subunit [Brucella ovis ATCC
25840]
gi|297248424|ref|ZP_06932142.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
5 str. B3196]
gi|148370209|gb|ABQ60188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella ovis
ATCC 25840]
gi|297175593|gb|EFH34940.1| ATP-dependent Clp protease, protease subunit [Brucella abortus bv.
5 str. B3196]
Length = 228
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 150/254 (59%), Gaps = 65/254 (25%)
Query: 15 SIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 74
++++ P I+Q + +T + LVP+V+EQT RGERAYDI+SRLL+ERII V
Sbjct: 7 NLVISPLIYQRPIMRDPIETVMN-------LVPMVVEQTNRGERAYDIFSRLLKERIIFV 59
Query: 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWC 134
GP++D +S +V AQLLFL++E+ KK I+MYINSPGG VTSG+ IYDTMQ++ PP++T C
Sbjct: 60 NGPVEDGMSMLVCAQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTMQFIRPPVSTLC 119
Query: 135 VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVG 194
+GQA SM SLLL AG G R++LPN+RIM+HQPSGG Q G
Sbjct: 120 MGQAASMGSLLLTAGATGHRYALPNARIMVHQPSGGFQ---------------------G 158
Query: 195 QACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLY 254
QA +DI+ A++II +K+++N +Y
Sbjct: 159 QA-------------------------------------SDIERHAQDIIKMKRRLNEIY 181
Query: 255 VKHTGLSIEKIGKS 268
VKHTG + I ++
Sbjct: 182 VKHTGRDYDTIERT 195
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 7/65 (10%)
Query: 351 SIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
++++ P I+Q + +T + LVP+V+EQT RGERAYDI+SRLL+ERII V
Sbjct: 7 NLVISPLIYQRPIMRDPIETVMN-------LVPMVVEQTNRGERAYDIFSRLLKERIIFV 59
Query: 411 MGPVS 415
GPV
Sbjct: 60 NGPVE 64
>gi|239948026|ref|ZP_04699779.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239922302|gb|EER22326.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 201
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMTNLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +T+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVITAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTRQELKHIEKS 168
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQT RGERAYDIYSRLL+ERII V V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVE 37
>gi|147677139|ref|YP_001211354.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
thermopropionicum SI]
gi|259585961|sp|A5D447.1|CLPP_PELTS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|146273236|dbj|BAF58985.1| protease subunit of ATP-dependent Clp proteases [Pelotomaculum
thermopropionicum SI]
Length = 194
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 140/231 (60%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD+ +++++AQ+LFL++E +K I
Sbjct: 3 LVPIVVEQTNRGERAYDIYSRLLKDRIIFLGGPIDDNTANLIIAQMLFLEAEDPEKDIQF 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQYV P+AT C+GQA SMASLLLAAG KG R+SLP +RI+I
Sbjct: 63 YINSPGGVVTAGMAIYDTMQYVRSPVATICIGQAASMASLLLAAGAKGKRYSLPYARILI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 123 HQPLGGVQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A+EI+ +++ +N + +HTG IEKI + T Y +
Sbjct: 134 ---------TDIEIHAKEILRMRQFLNEILSRHTGQPIEKIARDTERDYFM 175
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 3 LVPIVVEQTNRGERAYDIYSRLLKDRIIFLGGPID 37
>gi|410662925|ref|YP_006915296.1| ATP-dependent Clp protease proteolytic subunit [Simiduia
agarivorans SA1 = DSM 21679]
gi|409025282|gb|AFU97566.1| ATP-dependent Clp protease proteolytic subunit [Simiduia
agarivorans SA1 = DSM 21679]
Length = 208
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 144/239 (60%), Gaps = 58/239 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
+AK ++ LVPIV+EQT RGER+YDIYSRLL+ER+I ++G ++D ++++VVAQL
Sbjct: 1 MAKIDTAPELITNSLVPIVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQL 60
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL++E+ K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG
Sbjct: 61 LFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCLGQACSMGAFLLAAGA 120
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
G R+ LPN+R MIHQPSGG Q GQA
Sbjct: 121 PGKRYCLPNARTMIHQPSGGAQ---------------------GQA-------------- 145
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+EI+ +++++N L HTG S+E+I + T
Sbjct: 146 -----------------------SDIHIQAQEILKIRERLNTLMAAHTGRSVEEIARDT 181
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+AK ++ LVPIV+EQT RGER+YDIYSRLL+ER+I ++G V
Sbjct: 1 MAKIDTAPELITNSLVPIVVEQTARGERSYDIYSRLLKERVIFLVGQVE 49
>gi|312113123|ref|YP_004010719.1| endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
gi|311218252|gb|ADP69620.1| Endopeptidase Clp [Rhodomicrobium vannielii ATCC 17100]
Length = 214
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + G ++D+++S+V+AQLLFL+SE+ KK I++
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGVVEDNMASLVIAQLLFLESENPKKEINI 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL +YDTMQ++ PP++T CVGQA SM SLLLAAGE GMR +LPN+R+M+
Sbjct: 72 YINSPGGHVTSGLAMYDTMQFIRPPVSTLCVGQAASMGSLLLAAGEPGMRWALPNARVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+I+ K+++N +YVKHTG E I ++
Sbjct: 143 ---------SDIERHAEDILKTKRRLNEIYVKHTGQPYEVIERT 177
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL+ERII + G V
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGVVE 46
>gi|409426236|ref|ZP_11260798.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
HYS]
Length = 213
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++V AQ+LFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVAAQMLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+++K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAKEILSIKSRLNELLAYHTGQDLETIKRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|170592242|ref|XP_001900878.1| Probable ClpP-like protease [Brugia malayi]
gi|158591745|gb|EDP30349.1| Probable ClpP-like protease, putative [Brugia malayi]
Length = 218
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 144/247 (58%), Gaps = 64/247 (25%)
Query: 23 FQGLSLGHLAKTFHHS----ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPI 78
QGLS + + F H + L + +P+V++Q GR ER YDIYSRLL++RI+CVM I
Sbjct: 1 MQGLSF--IRQLFSHRQLHISLLRQQTIPMVVDQDGRIERVYDIYSRLLKDRIVCVMTSI 58
Query: 79 DDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQA 138
+D +++ ++AQLLFLQ ES+K I+MYI PGGSVT+GLGIYDTMQY+ P+ATWC+GQA
Sbjct: 59 NDQVAASIIAQLLFLQGESAKSTINMYIMCPGGSVTAGLGIYDTMQYISAPVATWCIGQA 118
Query: 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198
SM SLLL+AG KGMR SLPN+RIM+HQPSGG + GQA
Sbjct: 119 ASMGSLLLSAGAKGMRTSLPNARIMVHQPSGGAE---------------------GQA-- 155
Query: 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
+DI I+AEEI LK ++N +Y HT
Sbjct: 156 -----------------------------------SDILIRAEEIGRLKTRLNKIYAVHT 180
Query: 259 GLSIEKI 265
G IE I
Sbjct: 181 GQDIETI 187
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 6/61 (9%)
Query: 359 FQGLSLGHLAKTFHHS----ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
QGLS + + F H + L + +P+V++Q GR ER YDIYSRLL++RI+CVM +
Sbjct: 1 MQGLSF--IRQLFSHRQLHISLLRQQTIPMVVDQDGRIERVYDIYSRLLKDRIVCVMTSI 58
Query: 415 S 415
+
Sbjct: 59 N 59
>gi|403049603|ref|ZP_10904087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86D]
Length = 204
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 141/234 (60%), Gaps = 58/234 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQT RGER++DIYSRLL+ER+I + GP+DD +S+VVVAQLLFL+SE+ +K I +
Sbjct: 8 LIPMVIEQTARGERSFDIYSRLLKERVIFLSGPVDDYMSNVVVAQLLFLESENPEKDISI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+++GL IYDTMQ+V P I+T C+GQA SM ++LLA G KG R +LPNSRIMI
Sbjct: 68 YINSPGGSISAGLAIYDTMQFVSPTISTLCIGQAASMGAILLAGGNKGKRFALPNSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDP 278
+D +I A+EI+++KK +N + KHTG +I+KI K T L P
Sbjct: 139 ---------SDFEIHAKEILHMKKIVNEILAKHTGQTIKKIEKDTDRDNFLDAP 183
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
L+P+VIEQT RGER++DIYSRLL+ER+I + GPV Y
Sbjct: 8 LIPMVIEQTARGERSFDIYSRLLKERVIFLSGPVDDY 44
>gi|119898362|ref|YP_933575.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. BH72]
gi|166201798|sp|A1K783.1|CLPP_AZOSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119670775|emb|CAL94688.1| Endopeptidase Clp [Azoarcus sp. BH72]
Length = 212
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GP++D ++++VAQLLFL+SE+ K I+
Sbjct: 19 LIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LLAAGEKG R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ L++++NG+ KHTG +IE+I K T
Sbjct: 150 ---------SDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDT 185
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GPV+
Sbjct: 19 LIPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVN 53
>gi|226491764|ref|NP_001150643.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|195640820|gb|ACG39878.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
gi|413937908|gb|AFW72459.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 302
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVHL 136
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 137 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 196
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 197 HQPSGGAQ---------------------GQA---------------------------- 207
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ ++ ++N +Y KHT I+KI
Sbjct: 208 ---------TDIAIQAKEILKMRDRLNKIYQKHTRQPIDKI 239
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIA 111
>gi|284097335|ref|ZP_06385465.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
gi|283831154|gb|EFC35134.1| Peptidase S14, ClpP [Candidatus Poribacteria sp. WGA-A3]
Length = 203
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 151/260 (58%), Gaps = 67/260 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE T RGERAYDIYSRLL++RII + PIDD S++++AQLLFL++E +K I++
Sbjct: 2 LIPMVIESTNRGERAYDIYSRLLKDRIIFLGAPIDDIFSNLIIAQLLFLEAEDPEKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+GIYDTMQYV PPI T C+GQA SM +LLLAAG +G RH+LPN+R+MI
Sbjct: 62 YINSPGGSVTAGMGIYDTMQYVKPPITTICLGQAASMGALLLAAGTQGKRHALPNARVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPMGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
T+I I A EI+ +++++N + +HTG ++EKI + T Y ++
Sbjct: 133 ---------TEIDIHAREILKIRERLNQILSEHTGQALEKISQDTERDY---------FM 174
Query: 285 NGLYVKHTGLSIEKIGKSTN 304
+G K GL E I +++
Sbjct: 175 SGTEAKDYGLIDEVIVRASE 194
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE T RGERAYDIYSRLL++RII + P+
Sbjct: 2 LIPMVIESTNRGERAYDIYSRLLKDRIIFLGAPID 36
>gi|442323969|ref|YP_007363990.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
gi|441491611|gb|AGC48306.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus
stipitatus DSM 14675]
Length = 203
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIE T RGERAYD+YSRLL++RII + P++D +++++VAQLLFL+SE K I++Y
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM +LLL AG KG R++LPNSRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ L+ +NGL VKHTG SIE+I K T Y +
Sbjct: 133 --------TDIDIQAKEILRLRSYLNGLIVKHTGHSIERIEKDTERDYFM 174
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP VIE T RGERAYD+YSRLL++RII + PV+
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVN 36
>gi|398827196|ref|ZP_10585410.1| protease subunit of ATP-dependent protease [Phyllobacterium sp.
YR531]
gi|398220042|gb|EJN06502.1| protease subunit of ATP-dependent protease [Phyllobacterium sp.
YR531]
Length = 209
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GPI+D +++++ AQLLFL+SE+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMATLICAQLLFLESENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C GQA SM SLLL AGEK MR LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPAVSTLCFGQAASMGSLLLTAGEKDMRFVLPNARIML 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGQDYETIERT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIE 45
>gi|159043937|ref|YP_001532731.1| ATP-dependent Clp protease proteolytic subunit [Dinoroseobacter
shibae DFL 12]
gi|189082456|sp|A8LJA8.1|CLPP_DINSH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157911697|gb|ABV93130.1| endopeptidase Clp [Dinoroseobacter shibae DFL 12]
Length = 208
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERI+ V GP+ D +S +VVAQLL L++E+ K I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPVHDGMSQLVVAQLLHLEAENPSKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLL AGEKGMR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEKGMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YVKHTG ++K+
Sbjct: 142 ---------TDIMIHAQETQKLKDRLNQIYVKHTGQPLKKV 173
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERI+ V GPV
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIVFVNGPV 44
>gi|195645066|gb|ACG42001.1| ATP-dependent Clp protease proteolytic subunit [Zea mays]
Length = 302
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVHL 136
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 137 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 196
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 197 HQPSGGAQ---------------------GQA---------------------------- 207
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ ++ ++N +Y KHT I+KI
Sbjct: 208 ---------TDIAIQAKEILKMRDRLNKIYQKHTRQPIDKI 239
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 77 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIA 111
>gi|226489631|emb|CAX74966.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Schistosoma japonicum]
Length = 249
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 135/226 (59%), Gaps = 58/226 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVPIV+++T GERAYDIYSRLL++RIIC+MG I D ++ +VVAQLL+LQSE K P
Sbjct: 41 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIP 100
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IH+YINSPGG VT+GL IYDTMQ++ PP+ATWCVGQA SM SLLLAAG G+R +LP+SR
Sbjct: 101 IHIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSR 160
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
IM+HQPSG GQA
Sbjct: 161 IMVHQPSGSAH---------------------GQA------------------------- 174
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+I AEEII ++ IN +Y +HT S E I K
Sbjct: 175 ------------SDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEK 208
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVPIV+++T GERAYDIYSRLL++RIIC+MG +S
Sbjct: 41 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAIS 78
>gi|350425874|ref|XP_003494260.1| PREDICTED: hypothetical protein LOC100749102 [Bombus impatiens]
Length = 2402
Score = 202 bits (514), Expect = 3e-49, Method: Composition-based stats.
Identities = 102/235 (43%), Positives = 142/235 (60%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F+H LS +VP+V+EQ+ RGERAYDIYSRLL+ER+I + G ++D++++++VAQ+LFL+
Sbjct: 428 FNHHTDLSMSVVPMVVEQSSRGERAYDIYSRLLKERVIFLNGQVEDNMANLIVAQMLFLE 487
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ +K I++YINSPGG +TSG+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R
Sbjct: 488 AENPEKDIYLYINSPGGVITSGMSIYDTMQFIKPDVSTICLGQACSMGAFLLTAGAKGKR 547
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPN+R+MIHQP GG Q GQA
Sbjct: 548 FCLPNARVMIHQPLGGYQ---------------------GQA------------------ 568
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI AEE++ +K+++N L HTG SI+ I K T
Sbjct: 569 -------------------TDIQIHAEEMLKVKRRMNELMAHHTGKSIKTIEKDT 604
Score = 62.4 bits (150), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F+H LS +VP+V+EQ+ RGERAYDIYSRLL+ER+I + G V
Sbjct: 428 FNHHTDLSMSVVPMVVEQSSRGERAYDIYSRLLKERVIFLNGQV 471
>gi|262277075|ref|ZP_06054868.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
gi|262224178|gb|EEY74637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [alpha
proteobacterium HIMB114]
Length = 204
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ERII + GPI+ +SS+V AQLLFL+SE++ K I++
Sbjct: 12 LVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSYISSLVSAQLLFLESENNSKEIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT GL IYDTMQ++ P ++T C+GQA SM S LLAAGEKG+R SLPN+RIM+
Sbjct: 72 YINSPGGVVTDGLAIYDTMQFIKPTVSTLCIGQAASMGSFLLAAGEKGLRMSLPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I +EI++ KK++N +Y KHTG ++E I ++
Sbjct: 143 ---------TDIEIHTKEILSTKKRLNEIYSKHTGQTVETIKEA 177
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQT RGER++DIYSRLL+ERII + GP++ Y
Sbjct: 12 LVPMVIEQTPRGERSFDIYSRLLKERIIFLTGPINSY 48
>gi|224094113|ref|XP_002310077.1| predicted protein [Populus trichocarpa]
gi|222852980|gb|EEE90527.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 110/133 (82%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S T + L+P+VIE + RGERAYDI+SRLL+ERI+C+ GPIDD S VVVAQLLFL+SE+
Sbjct: 28 STTRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIDDDTSHVVVAQLLFLESEN 87
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
KPIHMY+NSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG KG R +L
Sbjct: 88 PSKPIHMYLNSPGGQVTAGLAIYDTMQYIRSPVTTICLGQAASMASLLLAAGAKGERKAL 147
Query: 158 PNSRIMIHQPSGG 170
PN+ IMIHQPSGG
Sbjct: 148 PNATIMIHQPSGG 160
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 34/42 (80%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S T + L+P+VIE + RGERAYDI+SRLL+ERI+C+ GP+
Sbjct: 28 STTRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPID 69
>gi|254785725|ref|YP_003073154.1| ATP-dependent Clp protease proteolytic subunit [Teredinibacter
turnerae T7901]
gi|259585966|sp|C5BTJ0.1|CLPP_TERTT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|237684355|gb|ACR11619.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Teredinibacter turnerae T7901]
Length = 214
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 140/233 (60%), Gaps = 58/233 (24%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
S T+ LVPIV+EQT RGER+YDIYSRLL+ER+I ++G ++D ++++VVAQLLFL++E
Sbjct: 10 QSTTIQSSLVPIVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLEAE 69
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM S LL+AG G R
Sbjct: 70 NPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGSFLLSAGATGKRFC 129
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPN+R MIHQPSGG Q GQA
Sbjct: 130 LPNARTMIHQPSGGAQ---------------------GQA-------------------- 148
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ ++ ++N + KHTG S+E++ + T
Sbjct: 149 -----------------SDIHIHAQEILKIRARLNEIMAKHTGKSVEEVARDT 184
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S T+ LVPIV+EQT RGER+YDIYSRLL+ER+I ++G V
Sbjct: 10 QSTTIQSSLVPIVVEQTARGERSYDIYSRLLKERVIFLVGQV 51
>gi|23501987|ref|NP_698114.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis 1330]
gi|376280781|ref|YP_005154787.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis
VBI22]
gi|384224775|ref|YP_005615939.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis 1330]
gi|38257636|sp|Q8G0I4.1|CLPP_BRUSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|23347937|gb|AAN30029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
1330]
gi|343382955|gb|AEM18447.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis 1330]
gi|358258380|gb|AEU06115.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis
VBI22]
Length = 209
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG + I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|242062408|ref|XP_002452493.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
gi|241932324|gb|EES05469.1| hypothetical protein SORBIDRAFT_04g026880 [Sorghum bicolor]
Length = 309
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 84 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVHL 143
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 144 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 203
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 204 HQPSGGAQ---------------------GQA---------------------------- 214
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ ++ ++N +Y KHT I+KI
Sbjct: 215 ---------TDIAIQAKEILKMRDRLNKIYQKHTRQPIDKI 246
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 84 LVPMVIETTSRGERAYDIFSRLLKERIVCIHGPIA 118
>gi|338532521|ref|YP_004665855.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
gi|337258617|gb|AEI64777.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
Length = 203
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIE T RGERAYD+YSRLL++RII + P++D +++++VAQLLFL+SE K I++Y
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM +LLL AG KG R++LPNSRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ L+ INGL VKHTG +IE+I K T Y +
Sbjct: 133 --------TDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFM 174
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP VIE T RGERAYD+YSRLL++RII + PV+
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVN 36
>gi|62290024|ref|YP_221817.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. 9-941]
gi|82699951|ref|YP_414525.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
biovar Abortus 2308]
gi|161619061|ref|YP_001592948.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
23365]
gi|163843378|ref|YP_001627782.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
23445]
gi|189024264|ref|YP_001935032.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
S19]
gi|260546576|ref|ZP_05822315.1| clp protease [Brucella abortus NCTC 8038]
gi|260566355|ref|ZP_05836825.1| clp protease [Brucella suis bv. 4 str. 40]
gi|260754852|ref|ZP_05867200.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
gi|260758069|ref|ZP_05870417.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
gi|260761893|ref|ZP_05874236.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
gi|260883864|ref|ZP_05895478.1| ClpP [Brucella abortus bv. 9 str. C68]
gi|261214103|ref|ZP_05928384.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
gi|261219456|ref|ZP_05933737.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
gi|261222276|ref|ZP_05936557.1| ClpP [Brucella ceti B1/94]
gi|261314167|ref|ZP_05953364.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261317744|ref|ZP_05956941.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261321952|ref|ZP_05961149.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261325200|ref|ZP_05964397.1| ClpP [Brucella neotomae 5K33]
gi|261752415|ref|ZP_05996124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
bv. 5 str. 513]
gi|261758300|ref|ZP_06002009.1| clp protease [Brucella sp. F5/99]
gi|265984170|ref|ZP_06096905.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|265988775|ref|ZP_06101332.1| ClpP [Brucella pinnipedialis M292/94/1]
gi|265998240|ref|ZP_06110797.1| ClpP [Brucella ceti M490/95/1]
gi|294852448|ref|ZP_06793121.1| Clp protease [Brucella sp. NVSL 07-0026]
gi|306838166|ref|ZP_07471022.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
2653]
gi|306841836|ref|ZP_07474518.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
gi|306843974|ref|ZP_07476569.1| ATP-dependent Clp protease proteolytic subunit [Brucella inopinata
BO1]
gi|340790728|ref|YP_004756193.1| ATP-dependent Clp protease, proteolytic subunit [Brucella
pinnipedialis B2/94]
gi|376273160|ref|YP_005151738.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
A13334]
gi|376276279|ref|YP_005116718.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis HSK
A52141]
gi|423166787|ref|ZP_17153490.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI435a]
gi|423170839|ref|ZP_17157514.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI474]
gi|423173079|ref|ZP_17159750.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI486]
gi|423178228|ref|ZP_17164872.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI488]
gi|423180269|ref|ZP_17166910.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI010]
gi|423183401|ref|ZP_17170038.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI016]
gi|423185659|ref|ZP_17172273.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI021]
gi|423188795|ref|ZP_17175405.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI259]
gi|18203228|sp|Q9L7X6.1|CLPP_BRUAB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|90101403|sp|Q2YPX1.1|CLPP_BRUA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082449|sp|A9M5C2.1|CLPP_BRUC2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082450|sp|B0CGR1.1|CLPP_BRUSI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706442|sp|B2S5W1.1|CLPP_BRUA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|6942106|gb|AAF32318.1|AF218420_1 ClpP [Brucella abortus]
gi|62196156|gb|AAX74456.1| ClpP, ATP-dependent Clp protease, proteolytic subunit ClpP
[Brucella abortus bv. 1 str. 9-941]
gi|82616052|emb|CAJ11088.1| Clp protease [Brucella melitensis biovar Abortus 2308]
gi|161335872|gb|ABX62177.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis ATCC
23365]
gi|163674101|gb|ABY38212.1| ATP-dependent Clp protease proteolytic subunit [Brucella suis ATCC
23445]
gi|189019836|gb|ACD72558.1| Clp protease [Brucella abortus S19]
gi|260095626|gb|EEW79503.1| clp protease [Brucella abortus NCTC 8038]
gi|260155873|gb|EEW90953.1| clp protease [Brucella suis bv. 4 str. 40]
gi|260668387|gb|EEX55327.1| endopeptidase Clp [Brucella abortus bv. 4 str. 292]
gi|260672325|gb|EEX59146.1| endopeptidase Clp [Brucella abortus bv. 2 str. 86/8/59]
gi|260674960|gb|EEX61781.1| endopeptidase Clp [Brucella abortus bv. 6 str. 870]
gi|260873392|gb|EEX80461.1| ClpP [Brucella abortus bv. 9 str. C68]
gi|260915710|gb|EEX82571.1| endopeptidase Clp [Brucella abortus bv. 3 str. Tulya]
gi|260920860|gb|EEX87513.1| ClpP [Brucella ceti B1/94]
gi|260924545|gb|EEX91113.1| ATP-dependent Clp protease [Brucella ceti M13/05/1]
gi|261294642|gb|EEX98138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
gi|261296967|gb|EEY00464.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
gi|261301180|gb|EEY04677.1| ClpP [Brucella neotomae 5K33]
gi|261303193|gb|EEY06690.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
gi|261738284|gb|EEY26280.1| clp protease [Brucella sp. F5/99]
gi|261742168|gb|EEY30094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brucella suis
bv. 5 str. 513]
gi|262552708|gb|EEZ08698.1| ClpP [Brucella ceti M490/95/1]
gi|264660972|gb|EEZ31233.1| ClpP [Brucella pinnipedialis M292/94/1]
gi|264662762|gb|EEZ33023.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|294821037|gb|EFG38036.1| Clp protease [Brucella sp. NVSL 07-0026]
gi|306275729|gb|EFM57453.1| ATP-dependent Clp protease proteolytic subunit [Brucella inopinata
BO1]
gi|306288063|gb|EFM59460.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. BO2]
gi|306406756|gb|EFM62979.1| ATP-dependent Clp protease proteolytic subunit [Brucella sp. NF
2653]
gi|340559187|gb|AEK54425.1| ATP-dependent Clp protease, proteolytic subunit [Brucella
pinnipedialis B2/94]
gi|363400766|gb|AEW17736.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
A13334]
gi|363404846|gb|AEW15141.1| ATP-dependent Clp protease proteolytic subunit [Brucella canis HSK
A52141]
gi|374539417|gb|EHR10921.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI474]
gi|374543018|gb|EHR14502.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI435a]
gi|374543634|gb|EHR15116.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI486]
gi|374545467|gb|EHR16928.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI488]
gi|374548833|gb|EHR20280.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI010]
gi|374549464|gb|EHR20907.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI016]
gi|374558453|gb|EHR29846.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI259]
gi|374559750|gb|EHR31135.1| ATP-dependent Clp protease proteolytic subunit [Brucella abortus
bv. 1 str. NI021]
Length = 209
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG + I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|226489629|emb|CAX74965.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Schistosoma japonicum]
Length = 253
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 135/226 (59%), Gaps = 58/226 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVPIV+++T GERAYDIYSRLL++RIIC+MG I D ++ +VVAQLL+LQSE K P
Sbjct: 45 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGSISDEVAGLVVAQLLYLQSEDKKIP 104
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IH+YINSPGG VT+GL IYDTMQ++ PP+ATWCVGQA SM SLLLAAG G+R +LP+SR
Sbjct: 105 IHIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSR 164
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
IM+HQPSG GQA
Sbjct: 165 IMVHQPSGSAH---------------------GQA------------------------- 178
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+I AEEII ++ IN +Y +HT S E I K
Sbjct: 179 ------------SDIKIHAEEIIKMRNIINTIYERHTKQSQEVIEK 212
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVPIV+++T GERAYDIYSRLL++RIIC+MG +S
Sbjct: 45 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGSIS 82
>gi|258404644|ref|YP_003197386.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfohalobium retbaense DSM 5692]
gi|257796871|gb|ACV67808.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfohalobium retbaense DSM 5692]
Length = 197
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE TGRGERAYDIYSRLL++RII + PIDD++++++ AQLLFL+SE+ K I+ Y
Sbjct: 3 VPIVIESTGRGERAYDIYSRLLKDRIILLGTPIDDNVANLICAQLLFLESENPDKEINFY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVTSGL IYDTMQY+ P+AT C+GQA SM ++LLAAGE GMR++LP+ RIM+H
Sbjct: 63 INSPGGSVTSGLAIYDTMQYISAPVATLCLGQAASMGAVLLAAGEPGMRYALPHGRIMLH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPMGGFQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA EI+ LK +N + +HTG+ +EK+ + T Y +
Sbjct: 133 --------TDIDIQAREILRLKSSLNSILSRHTGVELEKMERDTDRDYFM 174
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE TGRGERAYDIYSRLL++RII + P+
Sbjct: 3 VPIVIESTGRGERAYDIYSRLLKDRIILLGTPID 36
>gi|393218999|gb|EJD04487.1| hypothetical protein FOMMEDRAFT_140424 [Fomitiporia mediterranea
MF3/22]
Length = 202
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/124 (74%), Positives = 110/124 (88%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQ+GRGER++DI+SRLLRER++ + GPI DS+S+V VAQLLFL++E + KPIHMYIN
Sbjct: 1 MVIEQSGRGERSFDIFSRLLRERVVMLHGPIRDSMSAVAVAQLLFLEAEDATKPIHMYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+GL IYDT+QYV PI T+CVGQACSM SLLLAAGEKG RHSLP++ IMIHQP
Sbjct: 61 SPGGSVTAGLAIYDTVQYVSSPIHTYCVGQACSMGSLLLAAGEKGKRHSLPHASIMIHQP 120
Query: 168 SGGV 171
SGG
Sbjct: 121 SGGA 124
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 29/31 (93%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+VIEQ+GRGER++DI+SRLLRER++ + GP+
Sbjct: 1 MVIEQSGRGERSFDIFSRLLRERVVMLHGPI 31
>gi|393247505|gb|EJD55012.1| hypothetical protein AURDEDRAFT_77891 [Auricularia delicata
TFB-10046 SS5]
Length = 257
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 94/150 (62%), Positives = 117/150 (78%), Gaps = 10/150 (6%)
Query: 32 AKTFHHSA----------TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDS 81
A+ FH++A LVPIVIEQTGRGER+YDI+SRLLRER++ + G IDD+
Sbjct: 19 ARAFHYAAPGRSSSSRITDFKSALVPIVIEQTGRGERSYDIFSRLLRERVVMLNGGIDDA 78
Query: 82 LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSM 141
+S++VAQLLFL++E S KPIH+YINSPGG VT+G+ IYDTMQY+ P+ T+C+GQA SM
Sbjct: 79 EASLIVAQLLFLEAEESSKPIHLYINSPGGLVTAGMAIYDTMQYISAPVHTYCIGQAASM 138
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
SLLLAAG G RH+LPN+RIMIHQPSGG
Sbjct: 139 GSLLLAAGAPGKRHTLPNARIMIHQPSGGA 168
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 70/96 (72%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V G+ IYDTMQY+ P+ T+C+GQA SM SLLLAAG G RH+LPN+RIM
Sbjct: 101 LYINSPGGLVTAGMAIYDTMQYISAPVHTYCIGQAASMGSLLLAAGAPGKRHTLPNARIM 160
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
IHQPSGG GQA+DI I A+EI+ ++ + LY H
Sbjct: 161 IHQPSGGASGQASDIAIHAKEILRVRDALTRLYQNH 196
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 10/55 (18%)
Query: 368 AKTFHHSA----------TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMG 412
A+ FH++A LVPIVIEQTGRGER+YDI+SRLLRER++ + G
Sbjct: 19 ARAFHYAAPGRSSSSRITDFKSALVPIVIEQTGRGERSYDIFSRLLRERVVMLNG 73
>gi|452964828|gb|EME69861.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
sp. SO-1]
Length = 213
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 134/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G + D ++S++ AQLLFL+SE+ K I
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQYV P ++T C+GQA SM SLL+ AGEKG R SLPNSRIM+
Sbjct: 74 YINSPGGVVTSGLAIYDTMQYVRPAVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+ ++N +YV+HTG +E I K
Sbjct: 145 ---------TDIEIQAREILALRARLNNIYVEHTGQPLEVIEK 178
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQV 47
>gi|285017388|ref|YP_003375099.1| ATP-dependent clp protease proteolytic subunit protein [Xanthomonas
albilineans GPE PC73]
gi|283472606|emb|CBA15111.1| probable atp-dependent clp protease proteolytic subunit protein
[Xanthomonas albilineans GPE PC73]
Length = 208
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++VVVAQLLFL++++ +K I +
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLEADNPEKDISL 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRARLNEVLAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|339320059|ref|YP_004679754.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
gi|338226184|gb|AEI89068.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Midichloria mitochondrii IricVA]
Length = 216
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 138/223 (61%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+ + ERA+DIYSRLLR+ I+ V GPI+D++++++VAQLLFL+SE+ K I+M
Sbjct: 3 VVPIVIEQSSKAERAFDIYSRLLRDGIVFVNGPIEDNMAAIIVAQLLFLESENPDKDIYM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQYV P +AT C+GQACSM S+LLA GE GMR+SLPNSRIMI
Sbjct: 63 YINSPGGVVTAGMSIYDTMQYVKPRVATVCMGQACSMGSMLLAGGEPGMRYSLPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPHGGYR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+I A EI+ +K +N LYVKHTG +++I K
Sbjct: 134 ---------TDIEIHANEILRIKHNMNLLYVKHTGQPLKEIEK 167
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+ + ERA+DIYSRLLR+ I+ V GP+
Sbjct: 3 VVPIVIEQSSKAERAFDIYSRLLRDGIVFVNGPIE 37
>gi|108757731|ref|YP_634562.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
DK 1622]
gi|3023519|sp|O30612.1|CLPP2_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|2384690|gb|AAB97819.1| proteosome major subunit [Myxococcus xanthus DK 1622]
gi|108461611|gb|ABF86796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
xanthus DK 1622]
Length = 203
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIE T RGERAYD+YSRLL++RII + P++D +++++VAQLLFL+SE K I++Y
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM +LLL AG KG R++LPNSRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ L+ INGL VKHTG +IE+I K T Y +
Sbjct: 133 --------TDIDIQAKEILRLRSYINGLIVKHTGHTIERIEKDTERDYFM 174
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP VIE T RGERAYD+YSRLL++RII + PV+
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVN 36
>gi|376295039|ref|YP_005166269.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
desulfuricans ND132]
gi|323457600|gb|EGB13465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
desulfuricans ND132]
Length = 202
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE TGR ERAYDIYSRLL++RII + IDD ++S++ AQLLFL+SE +K I+MY
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRIILLGTAIDDHVASLICAQLLFLESEDPEKEIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSG+ IYDTMQY+ P+AT C+GQA SMASLLL AGEKGMR+SLP+SRI+IH
Sbjct: 64 INSPGGVVTSGMAIYDTMQYISAPVATLCMGQAASMASLLLCAGEKGMRYSLPHSRILIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI I A+EI+ +K ++NG+ +HTG SIEKI T Y +
Sbjct: 134 --------SDISIHAKEILRMKDELNGIMARHTGQSIEKITADTDRDYFM 175
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 25/27 (92%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERII 408
+P+VIE TGR ERAYDIYSRLL++RII
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRII 30
>gi|222055723|ref|YP_002538085.1| ATP-dependent Clp protease proteolytic subunit [Geobacter daltonii
FRC-32]
gi|254763790|sp|B9M0Y1.1|CLPP_GEOSF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|221565012|gb|ACM20984.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
daltonii FRC-32]
Length = 199
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + G IDD++S++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAIDDTVSNLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM+Y+ P++T CVGQA SM + LL+ GEKG R SL NSRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLANSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +KK++N L +H+G ++EKI T Y +
Sbjct: 133 ---------TDIHIHAQEILRMKKKLNELLAEHSGQTVEKIEADTERDYFM 174
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + G +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGAID 36
>gi|165933331|ref|YP_001650120.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Iowa]
gi|165908418|gb|ABY72714.1| ATP-dependent endopeptidase clp proteolytic subunit [Rickettsia
rickettsii str. Iowa]
Length = 216
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 143/243 (58%), Gaps = 60/243 (24%)
Query: 26 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V ++D ++++
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANL 58
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
+VAQLLFL++E+ KK I+MYINSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLL
Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLL 118
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
L GEKGMR+SLP+SRIMIHQPSGG + GQA
Sbjct: 119 LCGGEKGMRYSLPHSRIMIHQPSGGYK---------------------GQA--------- 148
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+E + +K+ +N LY KHT ++ I
Sbjct: 149 ----------------------------TDIEIHAQETLKIKRLLNELYSKHTEQELQHI 180
Query: 266 GKS 268
KS
Sbjct: 181 EKS 183
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 362 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V V
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVE 52
>gi|294083692|ref|YP_003550449.1| protease subunit of ATP-dependent Clp protease [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663264|gb|ADE38365.1| Protease subunit of ATP-dependent Clp protease [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 216
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/223 (47%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP+DD+ +S+V +QLLFL+SE+ K I M
Sbjct: 17 LVPMVVEQTNRGERSYDIFSRLLKERIIFLNGPVDDTTASLVCSQLLFLESENPTKDISM 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM+Y+ P ++T C+GQA SM SLLL AG G R+SLPN+RIM
Sbjct: 77 YINSPGGIVTSGLAIYDTMEYIRPDVSTVCMGQAASMGSLLLMAGAAGKRYSLPNARIMT 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA
Sbjct: 137 HQPSGGFS---------------------GQAS--------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
DI+I A EI++L+K++NG+YVKHTG +++ + K
Sbjct: 149 ----------DIEIHAREILDLRKRLNGMYVKHTGKTLKDVEK 181
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 17 LVPMVVEQTNRGERSYDIFSRLLKERIIFLNGPVD 51
>gi|430003192|emb|CCF18977.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Rhizobium sp.]
Length = 210
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAGEKGMR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGEKGMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +Y KHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYEKHTGRTYEEVEKT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|383482277|ref|YP_005391191.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
gi|378934631|gb|AFC73132.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
montanensis str. OSU 85-930]
Length = 201
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++ + KK I+MY
Sbjct: 4 VPIVIESTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAANPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 168
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIESTSRGERAYDIYSRLLKERIIFV 32
>gi|77463765|ref|YP_353269.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides 2.4.1]
gi|126462595|ref|YP_001043709.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|221639635|ref|YP_002525897.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides KD131]
gi|332558621|ref|ZP_08412943.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides WS8N]
gi|124013827|sp|Q3J1G6.1|CLPP_RHOS4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214702|sp|A3PKS1.1|CLPP_RHOS1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763798|sp|B9KJU9.1|CLPP_RHOSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77388183|gb|ABA79368.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
sphaeroides 2.4.1]
gi|126104259|gb|ABN76937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
sphaeroides ATCC 17029]
gi|221160416|gb|ACM01396.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides KD131]
gi|332276333|gb|EGJ21648.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides WS8N]
Length = 210
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSR+L+ERII + GP+ D +SS++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK+++N +YV+HTG +E +
Sbjct: 143 ---------TDIMIHARETEKLKRRLNEIYVRHTGQDLETV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDIYSR+L+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPV 45
>gi|386012908|ref|YP_005931185.1| protein ClpP [Pseudomonas putida BIRD-1]
gi|397698114|ref|YP_006535997.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
DOT-T1E]
gi|313499614|gb|ADR60980.1| ClpP [Pseudomonas putida BIRD-1]
gi|397334844|gb|AFO51203.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
DOT-T1E]
Length = 192
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/222 (46%), Positives = 136/222 (61%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+YIN
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG KG RH LPNSR+MIHQP
Sbjct: 61 SPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAKGKRHCLPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 129 ------TDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDT 164
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 34
>gi|157825907|ref|YP_001493627.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
str. Hartford]
gi|166214704|sp|A8GNZ4.1|CLPP_RICAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157799865|gb|ABV75119.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia akari
str. Hartford]
Length = 201
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK ++MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDVYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL G +GMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGTQGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 168
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|357025389|ref|ZP_09087513.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium
amorphae CCNWGS0123]
gi|355542633|gb|EHH11785.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium
amorphae CCNWGS0123]
Length = 209
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG+K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGQKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N +YVKHTG S ++I K+
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEVYVKHTGKSYDEIEKT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|229586800|ref|YP_002845301.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
ESF-5]
gi|228021850|gb|ACP53558.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia africae
ESF-5]
Length = 216
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 143/243 (58%), Gaps = 60/243 (24%)
Query: 26 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V ++D ++++
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANL 58
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
+VAQLLFL++E+ KK I+MYINSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLL
Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLL 118
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
L GEKGMR+SLP+SRIMIHQPSGG + GQA
Sbjct: 119 LCGGEKGMRYSLPHSRIMIHQPSGGYK---------------------GQA--------- 148
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+E + +K+ +N LY KHT ++ I
Sbjct: 149 ----------------------------TDIEIHAQETLKIKRLLNELYSKHTEQELKHI 180
Query: 266 GKS 268
KS
Sbjct: 181 EKS 183
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 362 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFV 47
>gi|15892669|ref|NP_360383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia conorii
str. Malish 7]
gi|15619841|gb|AAL03284.1| ATP-dependent clp protease proteolytic subunit [Rickettsia conorii
str. Malish 7]
Length = 216
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 143/243 (58%), Gaps = 60/243 (24%)
Query: 26 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V ++D ++++
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANL 58
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
+VAQLLFL++E+ KK I+MYINSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLL
Sbjct: 59 IVAQLLFLEAENPKKDIYMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLL 118
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205
L GEKGMR+SLP+SRIMIHQPSGG + GQA
Sbjct: 119 LCGGEKGMRYSLPHSRIMIHQPSGGYK---------------------GQA--------- 148
Query: 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A+E + +K+ +N LY KHT ++ I
Sbjct: 149 ----------------------------TDIEIHAQETLKIKRLLNELYSKHTEQELKHI 180
Query: 266 GKS 268
KS
Sbjct: 181 EKS 183
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 362 LSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
++ +L F +S VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 1 MTKNYLINQFQEKILMS--YVPIVIEPTSRGERAYDIYSRLLKERIIFV 47
>gi|319943618|ref|ZP_08017899.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
ATCC 51599]
gi|319742851|gb|EFV95257.1| ATP-dependent Clp protease proteolytic subunit [Lautropia mirabilis
ATCC 51599]
Length = 262
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 142/248 (57%), Gaps = 62/248 (25%)
Query: 26 LSLGHLAKTFHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDS 81
L L F A P +VPIVIEQ+GRGERAYDIYSRLLRER++ ++GP+ D
Sbjct: 37 LHLAQATDPFAPQAVAQAPQGLGMVPIVIEQSGRGERAYDIYSRLLRERVVFLVGPVMDQ 96
Query: 82 LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSM 141
+++ VAQ+L+L+SE+ K IH YINSPGGSV++GLGI+DTMQ+V P ++T C+G A SM
Sbjct: 97 SANLAVAQMLYLESENPDKDIHFYINSPGGSVSAGLGIFDTMQFVKPDVSTLCIGFAASM 156
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMAS 201
+ LLAAG KG RHSLPNSRIMIHQPSGG Q GQA
Sbjct: 157 GAFLLAAGAKGKRHSLPNSRIMIHQPSGGAQ---------------------GQA----- 190
Query: 202 LLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLS 261
+DI+I A+EII L+K++N + TG
Sbjct: 191 --------------------------------SDIEIHAKEIIYLRKRLNQILADRTGQP 218
Query: 262 IEKIGKST 269
+E+I + T
Sbjct: 219 LERIERDT 226
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 4/57 (7%)
Query: 362 LSLGHLAKTFHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L L F A P +VPIVIEQ+GRGERAYDIYSRLLRER++ ++GPV
Sbjct: 37 LHLAQATDPFAPQAVAQAPQGLGMVPIVIEQSGRGERAYDIYSRLLRERVVFLVGPV 93
>gi|256544468|ref|ZP_05471841.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
vaginalis ATCC 51170]
gi|256399793|gb|EEU13397.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
vaginalis ATCC 51170]
Length = 195
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 138/235 (58%), Gaps = 59/235 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIEQT RGERAYDIYSRLL++RII + GP++D +S +++AQLLFL+S+ K I
Sbjct: 7 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM Y+ P ++T C+GQA SM ++LL++G KG R SLPNS I+I
Sbjct: 67 YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGAQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPY 279
+DIQIQAE+I+ +KK++N + +TG SIEKI K T + + D Y
Sbjct: 138 ---------SDIQIQAEQILKMKKRLNKILADNTGQSIEKIQKDTDRDFAM-DAY 182
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP VIEQT RGERAYDIYSRLL++RII + GPV
Sbjct: 7 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVE 41
>gi|83954269|ref|ZP_00962989.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
NAS-14.1]
gi|83841306|gb|EAP80476.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
NAS-14.1]
Length = 219
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YVKHTG +EK+
Sbjct: 143 ---------TDIMIHAQETQKLKTRLNEIYVKHTGQPLEKV 174
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|405363134|ref|ZP_11026132.1| ATP-dependent Clp protease proteolytic subunit [Chondromyces
apiculatus DSM 436]
gi|397090077|gb|EJJ20963.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 203
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIE T RGERAYD+YSRLL++RII + P++D +++++VAQLLFL+SE K I++Y
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVNDDVANIIVAQLLFLESEDPDKGINLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM +LLL AG KG R++LPNSRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGAKGKRYALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ L+ INGL VKHTG ++E+I K T Y +
Sbjct: 133 --------TDIDIQAKEILRLRSYINGLIVKHTGHTVERIEKDTERDYFM 174
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP VIE T RGERAYD+YSRLL++RII + PV+
Sbjct: 3 VPFVIETTHRGERAYDLYSRLLKDRIIMLGTPVN 36
>gi|426401095|ref|YP_007020067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Endolissoclinum patella L2]
gi|425857763|gb|AFX98799.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Endolissoclinum patella L2]
Length = 211
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+E+T RGERAYDIYSRLL+ERII VMGP++D+++SVV AQLLFL++E+ K I M
Sbjct: 12 LVPMVVERTNRGERAYDIYSRLLKERIIFVMGPVNDAVASVVCAQLLFLEAENPTKDISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL +YDTM+Y+ P ++T C+GQA SM SLLL AG G R++L NSRIMI
Sbjct: 72 YINSPGGIVTSGLAMYDTMEYIRPDVSTVCIGQAASMGSLLLTAGTAGKRYALKNSRIMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ ++ ++N +YVKHTG + KI ++
Sbjct: 143 ---------TDIEIHAREILAVRSRLNQIYVKHTGQKLHKIEEA 177
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+E+T RGERAYDIYSRLL+ERII VMGPV+
Sbjct: 12 LVPMVVERTNRGERAYDIYSRLLKERIIFVMGPVN 46
>gi|83943111|ref|ZP_00955571.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
EE-36]
gi|83846119|gb|EAP83996.1| Protease subunit of ATP-dependent Clp protease [Sulfitobacter sp.
EE-36]
Length = 211
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/221 (49%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 64 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLQAGEKGMRFSLPNSRVMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGYQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YVKHTG +EK+
Sbjct: 135 ---------TDIMIHAQETQKLKTRLNEIYVKHTGQPLEKV 166
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 4 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 37
>gi|296536161|ref|ZP_06898289.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
gi|296263532|gb|EFH10029.1| endopeptidase Clp [Roseomonas cervicalis ATCC 49957]
Length = 213
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 135/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERA+DIYSRLL+ERII + GP+ D +SS++ AQLLFL+SE+ K I
Sbjct: 13 LVPMVIEQTARGERAFDIYSRLLKERIIFLTGPVYDQMSSLICAQLLFLESENPNKDIAF 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL +YDTMQY+ P++T C+G A SM SLLL AG KG R +LPNSRIM+
Sbjct: 73 YINSPGGVVSAGLAMYDTMQYIRAPVSTVCLGMAASMGSLLLTAGAKGKRFALPNSRIMV 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 133 HQPSGGAQ---------------------GQA---------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+K++N +YVKHTG IE+I +
Sbjct: 144 ---------TDIEIQAREILALRKRLNQIYVKHTGQPIEEIER 177
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+VIEQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 13 LVPMVIEQTARGERAFDIYSRLLKERIIFLTGPV 46
>gi|253701609|ref|YP_003022798.1| ATP-dependent Clp protease proteolytic subunit [Geobacter sp. M21]
gi|259585955|sp|C6E2T0.1|CLPP_GEOSM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|251776459|gb|ACT19040.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
M21]
Length = 199
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + G IDD+++++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM+Y+ P++T CVGQA SM + LL+ GEKG R+SL NSRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +K ++N L +HTG S+EK+ T Y +
Sbjct: 133 ---------TDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFM 174
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + G +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGID 36
>gi|323139086|ref|ZP_08074144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
sp. ATCC 49242]
gi|322395650|gb|EFX98193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylocystis
sp. ATCC 49242]
Length = 210
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 138/227 (60%), Gaps = 58/227 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S+ L+P VIE T RGER +DIYSRLLRERII V GPI+D ++SV++AQLLFL+SE+ KK
Sbjct: 9 SQYLIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIEDHMASVIIAQLLFLESENPKKE 68
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I +YINSPGG VTSGL IYDTMQ++ P ++T CVGQA SM SLLL AG G+R++LPN+R
Sbjct: 69 ISLYINSPGGVVTSGLAIYDTMQFIKPKVSTLCVGQAASMGSLLLCAGADGLRYALPNAR 128
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+M+HQPSGG Q GQA
Sbjct: 129 VMLHQPSGGFQ---------------------GQA------------------------- 142
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DIQ AE+I+ +KK++N +YV+HTG + I ++
Sbjct: 143 ------------SDIQRHAEDILKVKKRLNDIYVRHTGKDYDTIERT 177
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S+ L+P VIE T RGER +DIYSRLLRERII V GP+
Sbjct: 9 SQYLIPQVIENTSRGERGFDIYSRLLRERIIFVTGPIE 46
>gi|85373054|ref|YP_457116.1| ATP-dependent Clp protease proteolytic subunit [Erythrobacter
litoralis HTCC2594]
gi|84786137|gb|ABC62319.1| ATP-dependent Clp protease [Erythrobacter litoralis HTCC2594]
Length = 234
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 139/228 (60%), Gaps = 58/228 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
L+ LVP+V+EQT RGER++DI+SRLLRERI+ V G ++D ++S++ AQLLFL+SE+ K
Sbjct: 23 LTGALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGQVEDGMASLITAQLLFLESENPSK 82
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
PI MYINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+
Sbjct: 83 PISMYINSPGGVVTAGMAIHDTMQYIKPKVSTVCMGQAASMGSFLLAAGEPGMRVALPNA 142
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
RIM+HQPSGG A MAS
Sbjct: 143 RIMVHQPSGG-------------------------ARGMAS------------------- 158
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI+IQA EI+ ++K++N LYVK+TG + I K+
Sbjct: 159 --------------DIEIQAREILRIRKRMNDLYVKYTGQKLADIEKA 192
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+ LVP+V+EQT RGER++DI+SRLLRERI+ V G V
Sbjct: 23 LTGALVPVVVEQTSRGERSFDIFSRLLRERIVFVTGQVE 61
>gi|319784104|ref|YP_004143580.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317169992|gb|ADV13530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 209
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II LK+++N +YVKHTG S E+I K+
Sbjct: 142 ---------SDIERHALDIIKLKRRLNEVYVKHTGKSYEEIEKT 176
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|383312831|ref|YP_005365632.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Rickettsia amblyommii str. GAT-30V]
gi|378931491|gb|AFC70000.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Rickettsia amblyommii str. GAT-30V]
Length = 201
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I++Y
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYIY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|114707244|ref|ZP_01440142.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
HTCC2506]
gi|114537440|gb|EAU40566.1| ATP-dependent Clp protease proteolytic subunit [Fulvimarina pelagi
HTCC2506]
Length = 217
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 138/232 (59%), Gaps = 58/232 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
H + LVP+V+EQT RGERAYDI+SRLL+ER+I + GPI+DS++++V AQLLFL++E
Sbjct: 3 HPIETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEAE 62
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ KK I +YINSPGG VTSG+ IYDTMQ++ P + T C+GQA SM SLLL AGEK MR +
Sbjct: 63 NPKKEIALYINSPGGVVTSGMAIYDTMQFIRPAVTTLCIGQAASMGSLLLCAGEKDMRFA 122
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
PN+RIM+HQPSGG Q GQA
Sbjct: 123 TPNARIMVHQPSGGFQ---------------------GQA-------------------- 141
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N YVKHTG E I ++
Sbjct: 142 -----------------SDIERHAQDIIKLKRRLNETYVKHTGQDYETIERT 176
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + LVP+V+EQT RGERAYDI+SRLL+ER+I + GP+
Sbjct: 3 HPIETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIE 45
>gi|190570982|ref|YP_001975340.1| ATP-dependent Clp protease proteolytic subunit [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|213019499|ref|ZP_03335305.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|226706556|sp|B3CLB1.1|CLPP_WOLPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|190357254|emb|CAQ54678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|212994921|gb|EEB55563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 208
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K I M
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLL AG +G R+SLP+SRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLTAGAEGKRYSLPHSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA +
Sbjct: 123 HQPSGGYH---------------------GQATDI------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+I A EI+ +KK++N +Y KHTG S++KI
Sbjct: 137 ------------EIHANEILRVKKKLNQIYEKHTGNSLKKI 165
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIE 37
>gi|386717297|ref|YP_006183623.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia D457]
gi|384076859|emb|CCH11444.1| ATP-dependent Clp protease proteolytic subunit [Stenotrophomonas
maltophilia D457]
Length = 196
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 136/222 (61%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++VVVAQLLFL+SE+ +K I++YIN
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESENPEKDINIYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+G+ IYDTMQY+ P ++T C+GQA SM +LLLAAGE G R++LPNSR+MIHQP
Sbjct: 61 SPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGYQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 129 ------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 164
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPID 32
>gi|254525030|ref|ZP_05137085.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Stenotrophomonas sp. SKA14]
gi|219722621|gb|EED41146.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Stenotrophomonas sp. SKA14]
Length = 196
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 136/222 (61%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++VVVAQLLFL+SE+ +K I++YIN
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVVVAQLLFLESENPEKDINIYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+G+ IYDTMQY+ P ++T C+GQA SM +LLLAAGE G R++LPNSR+MIHQP
Sbjct: 61 SPGGVVTAGMAIYDTMQYIKPNVSTTCIGQAASMGALLLAAGEAGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGYQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 129 ------TDIDIHAREILTLRSRLNEVLAKHTGQSLETIARDT 164
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPID 32
>gi|159477909|ref|XP_001697051.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
reinhardtii]
gi|158274963|gb|EDP00743.1| catalytic subunit of mitochondrial ClpXP protease [Chlamydomonas
reinhardtii]
Length = 231
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 138/237 (58%), Gaps = 58/237 (24%)
Query: 32 AKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLL 91
+ T ++ S VPIVIEQT RGERAYDI+SRLL+ERI+ + G IDD+ S+ VVAQLL
Sbjct: 20 SSTVQAASVRSASYVPIVIEQTTRGERAYDIFSRLLKERIVVINGGIDDNTSNSVVAQLL 79
Query: 92 FLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 151
FL+S++ KPI MYINSPGG VT+GL IYDTMQY+ PI+T VGQA SMASLLLAAG K
Sbjct: 80 FLESQAPDKPITMYINSPGGVVTAGLAIYDTMQYIRCPISTLVVGQAASMASLLLAAGAK 139
Query: 152 GMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 211
G R SLPNSRIM+HQP G + GQA
Sbjct: 140 GQRRSLPNSRIMLHQPLGAAE---------------------GQA--------------- 163
Query: 212 RHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I+A+EI+ +K+ + LY+KHTG + E K+
Sbjct: 164 ----------------------TDIMIRAQEIMRMKETLTSLYIKHTGCTREMAEKT 198
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 368 AKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMG 412
+ T ++ S VPIVIEQT RGERAYDI+SRLL+ERI+ + G
Sbjct: 20 SSTVQAASVRSASYVPIVIEQTTRGERAYDIFSRLLKERIVVING 64
>gi|121997404|ref|YP_001002191.1| ATP-dependent Clp protease proteolytic subunit [Halorhodospira
halophila SL1]
gi|226706517|sp|A1WUM7.1|CLPP_HALHL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|121588809|gb|ABM61389.1| ATP-dependent Clp protease proteolytic subunit ClpP [Halorhodospira
halophila SL1]
Length = 210
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDI+SRLL+ER+I ++GP++D ++++VAQLLFL+SE+ K +H+
Sbjct: 16 LVPMVVEQSARGERAYDIFSRLLKERVIFLVGPVEDYQANLLVAQLLFLESENPDKDVHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P +AT CVGQA SM +LLLAAG +G RH+LPNSR+MI
Sbjct: 76 YINSPGGSVTAGLAIYDTMQFIKPDVATLCVGQAASMGALLLAAGAEGKRHALPNSRMMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI++++ ++N + HTG IE I + T
Sbjct: 147 ---------TDIDIHAREILSMRDRLNTILAHHTGQDIETIRQDT 182
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDI+SRLL+ER+I ++GPV Y
Sbjct: 16 LVPMVVEQSARGERAYDIFSRLLKERVIFLVGPVEDY 52
>gi|420238692|ref|ZP_14743075.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF080]
gi|398085332|gb|EJL75992.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF080]
Length = 210
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++S++ AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDYMASLICAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLL AGEKGMR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGEKGMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG ++E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTLEEVEKT 176
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV Y
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDY 47
>gi|389795694|ref|ZP_10198808.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
fulvus Jip2]
gi|388430346|gb|EIL87520.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodanobacter
fulvus Jip2]
Length = 209
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K I
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVNDQVANLLVAQMLFLESENPDKDIQF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQACSM S LL AG KG R++LPNSR+MI
Sbjct: 71 YINSPGGAVTAGLAIYDTMQFIKPSVSTMCIGQACSMGSFLLMAGAKGKRYALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQA EI+ +++++N LY +HTG + KI
Sbjct: 142 ---------TDIEIQAREILYVRERLNKLYAEHTGQPLAKI 173
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V+
Sbjct: 11 LVPMVVEQTARGERSYDIYSRLLKERVIFLVGEVN 45
>gi|403530411|ref|YP_006664940.1| ATP-dependent Clp protease proteolytic subunit [Bartonella quintana
RM-11]
gi|403232483|gb|AFR26226.1| ATP-dependent Clp protease proteolytic subunit [Bartonella quintana
RM-11]
Length = 206
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++DS++ +V AQLLFL++E+ KK I +
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISL 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 67 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGFQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 138 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERT 172
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 41
>gi|163851839|ref|YP_001639882.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens PA1]
gi|218530631|ref|YP_002421447.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens CM4]
gi|240139003|ref|YP_002963478.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens AM1]
gi|254561598|ref|YP_003068693.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens DM4]
gi|418060066|ref|ZP_12697994.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens DSM 13060]
gi|226706461|sp|A9W5F5.1|CLPP_METEP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763796|sp|B7KNT0.1|CLPP_METC4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|163663444|gb|ABY30811.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Methylobacterium extorquens PA1]
gi|218522934|gb|ACK83519.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Methylobacterium extorquens CM4]
gi|240008975|gb|ACS40201.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Methylobacterium extorquens AM1]
gi|254268876|emb|CAX24837.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Methylobacterium extorquens DM4]
gi|373566384|gb|EHP92385.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
extorquens DSM 13060]
Length = 208
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 138/234 (58%), Gaps = 64/234 (27%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
FH+S LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL+
Sbjct: 8 FHNS------LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I YINSPGG VTSGL IYDTMQ++ P+ T CVGQA SM SLLLAAGE G R
Sbjct: 62 AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+LPN+RIM+HQPSGG Q GQA
Sbjct: 122 FALPNARIMVHQPSGGFQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A EI LKK++N +YVKHTG E I ++
Sbjct: 143 -------------------TDILIHAREIEALKKRLNEIYVKHTGREYETIHQA 177
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 6/45 (13%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
FH+S LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV
Sbjct: 8 FHNS------LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVE 46
>gi|379018956|ref|YP_005295190.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hlp#2]
gi|379712470|ref|YP_005300809.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia philipii
str. 364D]
gi|376329115|gb|AFB26352.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia philipii
str. 364D]
gi|376331536|gb|AFB28770.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hlp#2]
Length = 201
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|188581623|ref|YP_001925068.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
populi BJ001]
gi|226706462|sp|B1Z9C7.1|CLPP_METPB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|179345121|gb|ACB80533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Methylobacterium populi BJ001]
Length = 208
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 138/234 (58%), Gaps = 64/234 (27%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
FH+S LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL+
Sbjct: 8 FHNS------LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDQGASLIVAQLLFLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I YINSPGG VTSGL IYDTMQ++ P+ T CVGQA SM SLLLAAGE G R
Sbjct: 62 AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLAAGEAGHR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+LPN+RIM+HQPSGG Q GQA
Sbjct: 122 FALPNARIMVHQPSGGFQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A EI LKK++N +YVKHTG E I ++
Sbjct: 143 -------------------TDILIHAREIEALKKRLNEIYVKHTGRDYETIHQA 177
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%), Gaps = 6/45 (13%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
FH+S LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV
Sbjct: 8 FHNS------LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVE 46
>gi|157828616|ref|YP_001494858.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|378721430|ref|YP_005286317.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Colombia]
gi|378722779|ref|YP_005287665.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Arizona]
gi|378724135|ref|YP_005289019.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hauke]
gi|379016310|ref|YP_005292545.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Brazil]
gi|379017921|ref|YP_005294156.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hino]
gi|166214706|sp|A8GSH5.1|CLPP_RICRS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|157801097|gb|ABV76350.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. 'Sheila Smith']
gi|376324834|gb|AFB22074.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Brazil]
gi|376326454|gb|AFB23693.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Colombia]
gi|376327803|gb|AFB25041.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Arizona]
gi|376330487|gb|AFB27723.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hino]
gi|376333150|gb|AFB30383.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rickettsii str. Hauke]
Length = 201
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTEQELQHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|74317695|ref|YP_315435.1| ATP-dependent Clp protease proteolytic subunit [Thiobacillus
denitrificans ATCC 25259]
gi|90183186|sp|Q3SI98.1|CLPP_THIDA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|74057190|gb|AAZ97630.1| peptidase S14, ClpP [Thiobacillus denitrificans ATCC 25259]
Length = 212
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GP++D+ ++++VAQ+LFL+SE+ K I++
Sbjct: 17 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDATANLIVAQMLFLESENPDKDIYL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P ++T C+GQA SM + LL AG KG R+ LPNSR+MI
Sbjct: 77 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRYCLPNSRVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGFQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK ++NG+ KHTG S+E I + T
Sbjct: 148 ---------SDIEIHAKEILYLKARLNGMLAKHTGQSLEVIDRDT 183
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GPV+
Sbjct: 17 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVN 51
>gi|256369536|ref|YP_003107046.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
CCM 4915]
gi|255999698|gb|ACU48097.1| ATP-dependent Clp protease proteolytic subunit [Brucella microti
CCM 4915]
Length = 209
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A++II +K+++N +YVKHTG + I
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYDTI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|380510628|ref|ZP_09854035.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
sacchari NCPPB 4393]
Length = 208
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRARLNEILAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|124266485|ref|YP_001020489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
gi|189082491|sp|A2SFB5.1|CLPP_METPP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|124259260|gb|ABM94254.1| ATP-dependent Clp protease proteolytic subunit ClpP [Methylibium
petroleiphilum PM1]
Length = 202
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 139/231 (60%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D +++VVAQLLFL+SE+ K I +
Sbjct: 11 MVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL I+DTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 71 YINSPGGSVSAGLSIFDTMQFIKPDVSTLCMGIAASMGAFLLAAGAKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA EI+ L++ +NG+ + TG +EKI + Y +
Sbjct: 142 ---------TDIEIQAREILKLRESLNGILAERTGQPLEKIRADSERDYFM 183
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 11 MVPVVIEQSGRGERAYDIYSRLLRERVIFLVGPVN 45
>gi|118590047|ref|ZP_01547451.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
IAM 12614]
gi|118437544|gb|EAV44181.1| ATP-dependent Clp protease proteolytic subunit [Stappia aggregata
IAM 12614]
Length = 211
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 141/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GP++D ++++V AQLL+L++E+ K I +
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLEAENPSKEIAI 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLLAAGEKGMR+ LPN+R+M+
Sbjct: 72 YINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAAGEKGMRYILPNARVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQAA--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI + A+EI+ +K+++N +YVKHTG +++++ ++
Sbjct: 144 ----------DIMLHAQEILAMKRRLNDIYVKHTGRTLDQVEEA 177
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVE 46
>gi|23014984|ref|ZP_00054776.1| COG0740: Protease subunit of ATP-dependent Clp proteases
[Magnetospirillum magnetotacticum MS-1]
Length = 213
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 133/223 (59%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G + D ++S++ AQLLFL+SE+ K I
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVASLICAQLLFLESENPSKDISF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T C+GQA SM SLL+ AGEKG R SLPNSRIM+
Sbjct: 74 YINSPGGVVTSGLAIYDTMQYIRPAVSTLCIGQAASMGSLLMTAGEKGKRFSLPNSRIMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+ ++N +YV HTG +E I K
Sbjct: 145 ---------TDIEIQAREILALRARLNNIYVDHTGQPLEVIEK 178
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G V
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQV 47
>gi|392407107|ref|YP_006443715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
mobile DSM 13181]
gi|390620243|gb|AFM21390.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
mobile DSM 13181]
Length = 192
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGERAYDIYSRLL++RII + I+D ++++VVAQ+LFL+SE K I++
Sbjct: 2 LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEDHIANLVVAQMLFLESEDPDKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY+ PI+T CVGQA SMA++LLAAG KG R +LPNSR+M+
Sbjct: 62 YINSPGGSVTAGLGIYDTMQYIKCPISTICVGQAASMAAVLLAAGTKGKRIALPNSRVML 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 122 HQPLGGVQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI ++ ++N + KHT IEK+ + T
Sbjct: 133 ---------TDIEIHAKEIKKIRDRLNEIIAKHTNQDIEKVARDT 168
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 28/28 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVPIVIEQTGRGERAYDIYSRLL++RII
Sbjct: 2 LVPIVIEQTGRGERAYDIYSRLLKDRII 29
>gi|423018592|ref|ZP_17009313.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
gi|338778354|gb|EGP42829.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans AXX-A]
Length = 217
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ++ P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + +TG SIE+I T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILADNTGQSIERIALDT 190
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|421484311|ref|ZP_15931882.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
gi|400197520|gb|EJO30485.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii HLE]
Length = 217
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ++ P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + +TG S+E+IG T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILADNTGQSMERIGLDT 190
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|21241838|ref|NP_641420.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|58580656|ref|YP_199672.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|78046637|ref|YP_362812.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|84622589|ref|YP_449961.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|188578371|ref|YP_001915300.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|188992776|ref|YP_001904786.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. campestris str. B100]
gi|289664185|ref|ZP_06485766.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. vasculorum NCPPB 702]
gi|289668776|ref|ZP_06489851.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. musacearum NCPPB 4381]
gi|294666562|ref|ZP_06731803.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|325914926|ref|ZP_08177258.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
vesicatoria ATCC 35937]
gi|325927441|ref|ZP_08188688.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
perforans 91-118]
gi|346723958|ref|YP_004850627.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. citrumelo F1]
gi|384418134|ref|YP_005627494.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
oryzae pv. oryzicola BLS256]
gi|418517007|ref|ZP_13083175.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
gi|418520577|ref|ZP_13086625.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|25008307|sp|Q8PNI5.1|CLPP_XANAC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460159|sp|Q5H434.1|CLPP_XANOR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|90183187|sp|Q3BWQ1.1|CLPP_XANC5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|110816521|sp|Q2P6Z0.1|CLPP_XANOM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706557|sp|B0RTF7.1|CLPP_XANCB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706558|sp|B2SMI3.1|CLPP_XANOP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|21107218|gb|AAM35956.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. citri str. 306]
gi|58425250|gb|AAW74287.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|78035067|emb|CAJ22712.1| ATP-dependent Clp protease [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|84366529|dbj|BAE67687.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|167734536|emb|CAP52746.1| ATP-dependent Clp protease [Xanthomonas campestris pv. campestris]
gi|188522823|gb|ACD60768.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|292603706|gb|EFF47116.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|325538819|gb|EGD10483.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
vesicatoria ATCC 35937]
gi|325542191|gb|EGD13686.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
perforans 91-118]
gi|346648705|gb|AEO41329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. citrumelo F1]
gi|353461048|gb|AEQ95327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
oryzae pv. oryzicola BLS256]
gi|410703462|gb|EKQ61953.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. malvacearum str. GSPB2388]
gi|410706220|gb|EKQ64682.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
axonopodis pv. malvacearum str. GSPB1386]
Length = 208
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|21230439|ref|NP_636356.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66769567|ref|YP_244329.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. campestris str. 8004]
gi|25008306|sp|Q8PBY6.1|CLPP_XANCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|81304478|sp|Q4URL4.1|CLPP_XANC8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|21112001|gb|AAM40280.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66574899|gb|AAY50309.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
campestris pv. campestris str. 8004]
Length = 208
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|49474139|ref|YP_032181.1| ATP-dependent Clp protease proteolytic subunit [Bartonella quintana
str. Toulouse]
gi|67460275|sp|Q6G178.1|CLPP_BARQU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|49239643|emb|CAF26003.1| ATP-dependent clp protease proteolytic subunit [Bartonella quintana
str. Toulouse]
Length = 210
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++DS++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|407785099|ref|ZP_11132247.1| ATP-dependent Clp protease proteolytic subunit [Celeribacter
baekdonensis B30]
gi|407203131|gb|EKE73118.1| ATP-dependent Clp protease proteolytic subunit [Celeribacter
baekdonensis B30]
Length = 207
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/218 (49%), Positives = 132/218 (60%), Gaps = 58/218 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++ AQLLFL++E+ KK I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLICAQLLFLEAENPKKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVMGQAASMGSLLLTAGEKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSI 262
TDI I A+E LK ++N +YVKHTG ++
Sbjct: 143 ---------TDIMIHAKETQKLKDRLNEIYVKHTGQTM 171
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|320164411|gb|EFW41310.1| ATP-dependent Clp protease proteolytic subunit [Capsaspora
owczarzaki ATCC 30864]
Length = 257
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 150/259 (57%), Gaps = 59/259 (22%)
Query: 18 LCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGP 77
L P + + S G ++ S T+ ++P V+E TG+ ER +D++SRLLRERIIC+MGP
Sbjct: 35 LSPMVAKSSSAGSPFYSYA-SPTVGAGVIPTVVENTGKSERWFDLFSRLLRERIICLMGP 93
Query: 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQ 137
IDDS +SV+V QLLFL+ ++ KPIHMYINSPGG VT+G+ IYDTMQYV P++T C+GQ
Sbjct: 94 IDDSTASVIVGQLLFLEGDNPLKPIHMYINSPGGVVTAGMAIYDTMQYVQSPVSTICMGQ 153
Query: 138 ACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQAC 197
A SM SL+LAAG KG R LP++R+MIHQP GG Q GQA
Sbjct: 154 AASMGSLILAAGAKGQRFILPHARVMIHQPLGGAQ---------------------GQA- 191
Query: 198 SMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
+DI IQA EI+ +++ +N +YV+H
Sbjct: 192 ------------------------------------SDIAIQAREILKMREMLNRIYVEH 215
Query: 258 TGLSIEKIGKSTVCFYVLH 276
TG +++I +T Y ++
Sbjct: 216 TGQPLKRIEDATERDYFMN 234
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 354 LCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGP 413
L P + + S G ++ S T+ ++P V+E TG+ ER +D++SRLLRERIIC+MGP
Sbjct: 35 LSPMVAKSSSAGSPFYSYA-SPTVGAGVIPTVVENTGKSERWFDLFSRLLRERIICLMGP 93
Query: 414 VS 415
+
Sbjct: 94 ID 95
>gi|293606140|ref|ZP_06688505.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
gi|292815595|gb|EFF74711.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
piechaudii ATCC 43553]
Length = 217
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ++ P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + +TG S+E+IG T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILADNTGQSMERIGLDT 190
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|322418659|ref|YP_004197882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
M18]
gi|320125046|gb|ADW12606.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter sp.
M18]
Length = 199
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + G IDD+++++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM+Y+ P++T C+GQA SM + LL+ GEKG R SL NSRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICIGQAASMGAFLLSGGEKGKRFSLANSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +K Q+N L +HTG S EK+ T Y +
Sbjct: 133 ---------TDIHIHAKEILRMKDQLNELLAEHTGQSFEKVAADTERDYFM 174
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + G +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGID 36
>gi|383484037|ref|YP_005392950.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia parkeri
str. Portsmouth]
gi|378936391|gb|AFC74891.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia parkeri
str. Portsmouth]
Length = 201
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|34581620|ref|ZP_00143100.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
246]
gi|341583923|ref|YP_004764414.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
heilongjiangensis 054]
gi|350273581|ref|YP_004884894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia japonica
YH]
gi|374319373|ref|YP_005065872.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
13-B]
gi|383751354|ref|YP_005426455.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
str. D-CWPP]
gi|20137864|sp|Q92HM5.2|CLPP_RICCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|28263005|gb|EAA26509.1| ATP-dependent clp protease proteolytic subunit [Rickettsia sibirica
246]
gi|340808149|gb|AEK74737.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
heilongjiangensis 054]
gi|348592794|dbj|BAK96755.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia japonica
YH]
gi|360041922|gb|AEV92304.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
13-B]
gi|379774368|gb|AFD19724.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia slovaca
str. D-CWPP]
Length = 201
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|163759316|ref|ZP_02166402.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
phototrophica DFL-43]
gi|162283720|gb|EDQ34005.1| ATP-dependent Clp protease proteolytic subunit [Hoeflea
phototrophica DFL-43]
Length = 210
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFITGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P I+T CVGQA SM SLLL AGEKGMR + PN+R+M+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAISTLCVGQAASMGSLLLCAGEKGMRFATPNARVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG E + K+
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEVYVKHTGQDYETVEKT 176
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIFSRLLKERIIFITGPVE 45
>gi|335042770|ref|ZP_08535797.1| protease subunit of ATP-dependent Clp protease [Methylophaga
aminisulfidivorans MP]
gi|333789384|gb|EGL55266.1| protease subunit of ATP-dependent Clp protease [Methylophaga
aminisulfidivorans MP]
Length = 210
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 141/234 (60%), Gaps = 58/234 (24%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
++ + LVPIV+EQT RGER+YDI+SRLL+ER+I ++GP++D ++++VVAQLLFL+S
Sbjct: 8 EETSMIQNALVPIVVEQTSRGERSYDIFSRLLKERVIFLVGPVEDQMANLVVAQLLFLES 67
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ K IH+YINSPGG+VT+GL IYDTMQ++ P ++T C+GQA SM ++LLA G +G R+
Sbjct: 68 ENPDKDIHLYINSPGGAVTAGLAIYDTMQFIKPNVSTLCIGQAASMGAVLLAGGAEGKRY 127
Query: 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 215
LPNSRIM+HQP GG Q GQA
Sbjct: 128 CLPNSRIMVHQPLGGFQ---------------------GQA------------------- 147
Query: 216 PNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D I A+EI++++ ++NG+ KHTG IE I K T
Sbjct: 148 ------------------SDFDIHAKEILSIRDRLNGILAKHTGQDIEAIRKDT 183
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ + LVPIV+EQT RGER+YDI+SRLL+ER+I ++GPV
Sbjct: 8 EETSMIQNALVPIVVEQTSRGERSYDIFSRLLKERVIFLVGPVE 51
>gi|325294216|ref|YP_004280730.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064664|gb|ADY72671.1| ATP-dependent Clp protease proteolytic subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 200
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIVIEQTGRGERAYDIYSRLL++RII + PIDD +++++VAQLLFL++E +K I++
Sbjct: 8 FVPIVIEQTGRGERAYDIYSRLLKDRIIMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LP++RIMI
Sbjct: 68 YINSPGGVVTAGLAIYDTMQYIKPDVVTICLGQAASMGAVLLAAGAKGKRFALPHARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A+EI+ LKK +N + KHTG S+ KI K T Y +
Sbjct: 139 ---------TDIEIHAKEILRLKKMLNEILSKHTGQSLRKIEKDTERDYFM 180
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQTGRGERAYDIYSRLL++RII + P+
Sbjct: 8 FVPIVIEQTGRGERAYDIYSRLLKDRIIMLGTPID 42
>gi|46579746|ref|YP_010554.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
vulgaris str. Hildenborough]
gi|120602778|ref|YP_967178.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
vulgaris DP4]
gi|387153092|ref|YP_005702028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
vulgaris RCH1]
gi|60389677|sp|Q72CE8.1|CLPP_DESVH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201819|sp|A1VE85.1|CLPP_DESVV RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|46449161|gb|AAS95813.1| ATP-dependent Clp protease, proteolytic subunit [Desulfovibrio
vulgaris str. Hildenborough]
gi|120563007|gb|ABM28751.1| ATP-dependent Clp protease proteolytic subunit ClpP [Desulfovibrio
vulgaris DP4]
gi|311233536|gb|ADP86390.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
vulgaris RCH1]
Length = 201
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE TGR ERAYDIYSRLL++RI+ + PIDD ++S++ AQLLFL+SE+ +K IHMY
Sbjct: 3 VPIVIESTGRAERAYDIYSRLLKDRIVLLGTPIDDQVASLICAQLLFLESENPEKEIHMY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQY+ P++T C+GQA SM +LLLAAG G+R SLP+SRIMIH
Sbjct: 63 INSPGGSVTAGMAIYDTMQYINSPVSTLCMGQAASMGALLLAAGAPGLRFSLPHSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 123 QPSGGFQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA E++ LK+ +N + +HTG +E++ T Y +
Sbjct: 133 --------TDIDIQAREVLRLKQSLNAIMSQHTGKPLEQVALDTERDYFM 174
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE TGR ERAYDIYSRLL++RI+ + P+
Sbjct: 3 VPIVIESTGRAERAYDIYSRLLKDRIVLLGTPID 36
>gi|224367556|ref|YP_002601719.1| protein ClpP1 [Desulfobacterium autotrophicum HRM2]
gi|259585947|sp|C0QGT0.1|CLPP_DESAH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|223690272|gb|ACN13555.1| ClpP1 [Desulfobacterium autotrophicum HRM2]
Length = 205
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/251 (43%), Positives = 145/251 (57%), Gaps = 67/251 (26%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+P+V+EQ+ RGERAYDIYSRLL++RII + +DD +++++VAQLLFL+SE +K I+
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAMDDEVANLIVAQLLFLESEDPEKDIN 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
YINSPGG VT+G+ +YDTMQY+ P +AT C+GQA SM +LLLAAG KG R SLPNSRIM
Sbjct: 62 FYINSPGGVVTAGMAVYDTMQYIKPDVATVCIGQAASMGALLLAAGAKGKRFSLPNSRIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPLGGAQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283
+DI+IQA EI+ +K+ ++G+ KHTG + +KI + T F+
Sbjct: 134 ----------SDIKIQANEILRMKEVLSGILSKHTGQNFDKISEDTDR---------DFF 174
Query: 284 INGLYVKHTGL 294
++G K GL
Sbjct: 175 MSGDQAKEYGL 185
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 28/29 (96%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERII 408
PL+P+V+EQ+ RGERAYDIYSRLL++RII
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRII 30
>gi|451940540|ref|YP_007461178.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
australis Aust/NH1]
gi|451899927|gb|AGF74390.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
australis Aust/NH1]
Length = 209
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKAISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLLAAG KG R +LPN+R+M+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLAAGAKGHRFALPNARVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YV+HTG S E I K+
Sbjct: 142 ---------SDIERHARDIIQMKQRLNQIYVQHTGQSYEIIEKT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|424795846|ref|ZP_18221654.1| ATP-dependent Clp protease [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|433679138|ref|ZP_20510914.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440731335|ref|ZP_20911360.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
translucens DAR61454]
gi|422795260|gb|EKU23983.1| ATP-dependent Clp protease [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|430815742|emb|CCP41464.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
translucens pv. translucens DSM 18974]
gi|440373297|gb|ELQ10056.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas
translucens DAR61454]
Length = 208
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQ+LFL++++ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQMLFLEADNPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T C+GQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICIGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPID 44
>gi|194595677|gb|ACF77120.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
brasilense]
Length = 210
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLL+ERII ++G ++D+++S++ +QLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPSKDIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM SLLLAAG G R SLPNSRIMI
Sbjct: 71 YINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ L+ ++N +YVKHTG S++ I
Sbjct: 142 ---------SDIEIQAQEILKLRSRLNDIYVKHTGQSLDTI 173
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLL+ERII ++G V+
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVN 45
>gi|311107153|ref|YP_003980006.1| ATP-dependent Clp protease proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
gi|310761842|gb|ADP17291.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Achromobacter
xylosoxidans A8]
Length = 217
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 140/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ+V P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + ++TG ++E+IG T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILAENTGQTMERIGIDT 190
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|71729193|gb|EAO31314.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
Length = 208
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD ++++VVAQLLFL++E+ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLVVAQLLFLEAENPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I T
Sbjct: 141 ---------TDIDIHAREILALRARLNEILAKHTGQSLETIAHDT 176
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+ Y
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDY 46
>gi|388257267|ref|ZP_10134446.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio sp. BR]
gi|387938434|gb|EIK44986.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio sp. BR]
Length = 208
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 141/233 (60%), Gaps = 58/233 (24%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
S+ ++ LVP+VIEQT RGER++DIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E
Sbjct: 4 QSSVINSGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAE 63
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R
Sbjct: 64 NPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLNAGTKGKRFC 123
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPNSR+MIHQPSGG Q GQA
Sbjct: 124 LPNSRVMIHQPSGGAQ---------------------GQA-------------------- 142
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+EI+ ++ ++N L H+G IEKI T
Sbjct: 143 -----------------SDIHIQAQEILKIRSRLNELMAFHSGQPIEKIELDT 178
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 37/45 (82%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
S+ ++ LVP+VIEQT RGER++DIYSRLL+ER+I ++GPV Y
Sbjct: 4 QSSVINSGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGPVEDY 48
>gi|121602655|ref|YP_988860.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
bacilliformis KC583]
gi|421760663|ref|ZP_16197478.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
bacilliformis INS]
gi|166201800|sp|A1USA7.1|CLPP_BARBK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|120614832|gb|ABM45433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Bartonella
bacilliformis KC583]
gi|411174752|gb|EKS44782.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
bacilliformis INS]
Length = 210
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++DS++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDSMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PPI+T C+GQA SM SLLL AG KG R SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPISTLCMGQAASMGSLLLTAGAKGHRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A++II +K+ +N +YV+HTG E I
Sbjct: 142 ---------SDIERHAQDIIRMKRHLNEIYVQHTGQDYEII 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|146277488|ref|YP_001167647.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter
sphaeroides ATCC 17025]
gi|166214703|sp|A4WSH8.1|CLPP_RHOS5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|145555729|gb|ABP70342.1| Endopeptidase Clp [Rhodobacter sphaeroides ATCC 17025]
Length = 210
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SR+L+ERII + GP+ D +SS++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK+++N +YVKHTG ++ +
Sbjct: 143 ---------TDIMIHARETEKLKRRLNEIYVKHTGQDLDTV 174
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SR+L+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPV 45
>gi|238650581|ref|YP_002916433.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
peacockii str. Rustic]
gi|259585964|sp|C4K1D4.1|CLPP_RICPU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|238624679|gb|ACR47385.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
peacockii str. Rustic]
Length = 201
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+E T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVVEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GEKGMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTEQELKHIEKS 168
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIV+E T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVVEPTSRGERAYDIYSRLLKERIIFV 32
>gi|219885303|gb|ACL53026.1| unknown [Zea mays]
Length = 302
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE T RGERAYDI SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+
Sbjct: 77 LVPMVIETTSRGERAYDILSRLLKERIVCIHGPIADDTASLVVAQLLFLESENPLKPVHL 136
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P+ T C+GQA SM SLLLAAG G R +LPN+R+MI
Sbjct: 137 YINSPGGVVTAGLAIYDTMQYIRCPVTTLCIGQAASMGSLLLAAGAPGERRALPNARVMI 196
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 197 HQPSGGAQ---------------------GQA---------------------------- 207
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQA+EI+ ++ ++N +Y KHT I+KI
Sbjct: 208 ---------TDIAIQAKEILKMRDRLNKIYQKHTRQPIDKI 239
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE T RGERAYDI SRLL+ERI+C+ GP++
Sbjct: 77 LVPMVIETTSRGERAYDILSRLLKERIVCIHGPIA 111
>gi|17982823|gb|AAL52055.1| ATP-dependent clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. 16M]
Length = 247
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/265 (40%), Positives = 153/265 (57%), Gaps = 65/265 (24%)
Query: 4 KTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIY 63
+ C+ + ++++ P I+Q + +T + LVP+V+EQT RGERAYDI+
Sbjct: 15 RNALCMEVRRFNLVISPLIYQRPIMRDPIETVMN-------LVPMVVEQTNRGERAYDIF 67
Query: 64 SRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123
SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+MYINSPGG VTSG+ IYDTM
Sbjct: 68 SRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINMYINSPGGVVTSGMAIYDTM 127
Query: 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQY 183
Q++ PP++T C+GQA SM SLLL AG G R++L N+RIM+HQPSGG Q
Sbjct: 128 QFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALLNARIMVHQPSGGFQ----------- 176
Query: 184 VLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEI 243
GQA +DI+ A++I
Sbjct: 177 ----------GQA-------------------------------------SDIERHAQDI 189
Query: 244 INLKKQINGLYVKHTGLSIEKIGKS 268
I +K+++N +YVKHTG + I ++
Sbjct: 190 IKMKRRLNEIYVKHTGRDYDTIERT 214
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 11/92 (11%)
Query: 324 IGAWFVNYSEATTMKKKTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVP 383
+G +F +E + + C+ + ++++ P I+Q + +T + LVP
Sbjct: 3 VGGYFAPLAE----QGRNALCMEVRRFNLVISPLIYQRPIMRDPIETVMN-------LVP 51
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 52 MVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 83
>gi|115311359|sp|Q2W3H9.2|CLPP_MAGMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 203
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 134/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G + D ++S++ AQLLFL+SE+ K I
Sbjct: 4 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAF 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T C+GQA SM SLL+ AGEKG R SLPNSRIM+
Sbjct: 64 YINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMV 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 124 HQPSGGAQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+ ++N +YV+HTG ++ I K
Sbjct: 135 ---------TDIEIQAREILALRARLNNIYVEHTGQPLDVIEK 168
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 4 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQV 37
>gi|148263972|ref|YP_001230678.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
uraniireducens Rf4]
gi|189082459|sp|A5GFA0.1|CLPP_GEOUR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|146397472|gb|ABQ26105.1| ATP-dependent Clp protease proteolytic subunit ClpP [Geobacter
uraniireducens Rf4]
Length = 199
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RI+ + G IDD++S++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM+Y+ P++T CVGQA SM + LL+ GEKG R SL NSRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRFSLTNSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +KK++N L +HTG +EK+ T Y +
Sbjct: 133 ---------TDIHIHAQEILRMKKKLNELMAEHTGQPVEKLEADTERDYFM 174
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RI+ + G +
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIVFLGGAID 36
>gi|392382084|ref|YP_005031281.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
brasilense Sp245]
gi|356877049|emb|CCC97850.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
brasilense Sp245]
Length = 211
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 138/221 (62%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLL+ERII ++G ++D+++S++ +QLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPSKDIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM SLLLAAG G R SLPNSRIMI
Sbjct: 71 YINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ L+ ++N +YVKHTG S++ I
Sbjct: 142 ---------SDIEIQAQEILKLRSRLNDIYVKHTGQSLDTI 173
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLL+ERII ++G V+
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVN 45
>gi|157964626|ref|YP_001499450.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
massiliae MTU5]
gi|157844402|gb|ABV84903.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
massiliae MTU5]
Length = 216
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I++Y
Sbjct: 19 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYIY 78
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GE+GMR+SLP+SRIMIH
Sbjct: 79 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEQGMRYSLPHSRIMIH 138
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 139 QPSGGYK---------------------GQA----------------------------- 148
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 149 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 183
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 19 VPIVIEPTSRGERAYDIYSRLLKERIIFV 47
>gi|422320060|ref|ZP_16401128.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
gi|317405213|gb|EFV85552.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
xylosoxidans C54]
Length = 217
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ+V P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + +TG SI++I T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILADNTGQSIDRIALDT 190
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|126733145|ref|ZP_01748892.1| Clp protease, putative [Roseobacter sp. CCS2]
gi|126716011|gb|EBA12875.1| Clp protease, putative [Roseobacter sp. CCS2]
Length = 206
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +S ++VAQLL L+SE+ KK I M
Sbjct: 11 LVPMVVEQTARGERAYDIFSRLLKERIIFVNGPVHDGMSQLIVAQLLHLESENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AG +GMR SLPNSR+M+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGSEGMRFSLPNSRVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++N +YVKHTG +++K+
Sbjct: 142 ---------TDIMIHAAETQKLKTRLNEIYVKHTGNTLKKV 173
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTARGERAYDIFSRLLKERIIFVNGPV 44
>gi|332283982|ref|YP_004415893.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
gi|330427935|gb|AEC19269.1| ATP-dependent Clp protease proteolytic subunit [Pusillimonas sp.
T7-7]
Length = 218
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQ+GRGER+YDIYSRLLRER+I +GP++D +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 VPIVIEQSGRGERSYDIYSRLLRERVIFFVGPVNDHTANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ++ P ++T C G A SM + LLAAG KG R++LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFIKPDVSTLCTGIAASMGAFLLAAGAKGKRYTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + K+TG +E+I + T
Sbjct: 155 --------SDIQIQAREILSLRERLNTILAKNTGQPVERIAEDT 190
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 32/34 (94%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQ+GRGER+YDIYSRLLRER+I +GPV+
Sbjct: 25 VPIVIEQSGRGERSYDIYSRLLRERVIFFVGPVN 58
>gi|260892392|ref|YP_003238489.1| ATP-dependent Clp protease proteolytic subunit [Ammonifex degensii
KC4]
gi|260864533|gb|ACX51639.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ammonifex
degensii KC4]
Length = 200
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 139/229 (60%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+S LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD L+++V+AQLLFL++E +K
Sbjct: 1 MSSLLVPIVVEQTSRGERAYDIYSRLLKDRIIFIGGPIDDHLANLVIAQLLFLEAEDPEK 60
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
IH+YINSPGG VT+G+ IYDTMQY+ P ++T C+GQA SMA+ LLAAG KG R++LP +
Sbjct: 61 DIHLYINSPGGLVTAGMAIYDTMQYIRPDVSTICLGQAASMAAFLLAAGAKGKRYALPYA 120
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
RIM+HQP GG Q GQA
Sbjct: 121 RIMLHQPLGGFQ---------------------GQA------------------------ 135
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+++I A EI+ +++ +N L KHTG +EKI + T
Sbjct: 136 -------------TEVEIHAREIMRMRQVLNELLSKHTGQPVEKIAQDT 171
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+S LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 1 MSSLLVPIVVEQTSRGERAYDIYSRLLKDRIIFIGGPID 39
>gi|260575566|ref|ZP_05843564.1| Endopeptidase Clp [Rhodobacter sp. SW2]
gi|259022209|gb|EEW25507.1| Endopeptidase Clp [Rhodobacter sp. SW2]
Length = 210
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SR+L+ERII + GP+ D +S+++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPVHDGMSALICAQLLFLEAENPTKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P I+T +GQA SM SLLL AG+KGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPRISTLVIGQAASMGSLLLTAGQKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++NG+YVKHTG +E +
Sbjct: 143 ---------TDIMIHAQETQKLKDRLNGIYVKHTGQPMEAV 174
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SR+L+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRMLKERIIFLSGPV 45
>gi|329908483|ref|ZP_08274873.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
gi|327546710|gb|EGF31661.1| ATP-dependent Clp protease proteolytic subunit [Oxalobacteraceae
bacterium IMCC9480]
Length = 206
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K I +
Sbjct: 15 MIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFLESENPDKDISL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 75 YINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 135 HQPSGGAQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ L++++NG+ TG +IE+I + T
Sbjct: 146 ---------TDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDT 181
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 15 MIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 49
>gi|13476994|ref|NP_108564.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium loti
MAFF303099]
gi|18202642|sp|Q982V6.1|CLPP2_RHILO RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|14027757|dbj|BAB54350.1| ATP-dependent Clp proteinase [Mesorhizobium loti MAFF303099]
Length = 209
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLTAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ LK+++N +YVKHTG S E+I ++
Sbjct: 142 ---------SDIERHAMDIVKLKRRLNEVYVKHTGKSYEEIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|187477999|ref|YP_786023.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
gi|115422585|emb|CAJ49110.1| ATP-dependent Clp protease proteolytic subunit [Bordetella avium
197N]
Length = 217
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I Y
Sbjct: 25 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ+V P ++T C G A SM + LLAAG+KG R SLPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA+EI++L++++N + ++TG S+E+I T
Sbjct: 155 --------SDIQIQAKEILDLRERLNRILAENTGQSMERIAIDT 190
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|255565556|ref|XP_002523768.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223536980|gb|EEF38617.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 296
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 107/126 (84%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE + RGERAYDI+SRLL+ERI+C+ GPI+D + VVVAQLLFL+SE+ KPIHM
Sbjct: 87 LVPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTAHVVVAQLLFLESENPSKPIHM 146
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGG VT+GL IYDTMQY+ PI T C+GQA SMASLLLAAG KG R SLPN+ IMI
Sbjct: 147 YLNSPGGQVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERKSLPNATIMI 206
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 207 HQPSGG 212
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE + RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 87 LVPMVIEHSSRGERAYDIFSRLLKERIVCINGPIN 121
>gi|451941812|ref|YP_007462449.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
gi|451901199|gb|AGF75661.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
vinsonii subsp. berkhoffii str. Winnie]
Length = 206
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ KK I +
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEISL 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 67 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGFQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 138 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERT 172
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 41
>gi|28198386|ref|NP_778700.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
Temecula1]
gi|182681028|ref|YP_001829188.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
M23]
gi|386084549|ref|YP_006000831.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
subsp. fastidiosa GB514]
gi|32129456|sp|Q87E51.1|CLPP_XYLFT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706560|sp|B2I8K3.1|CLPP_XYLF2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|28056456|gb|AAO28349.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
Temecula1]
gi|182631138|gb|ACB91914.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xylella
fastidiosa M23]
gi|307579496|gb|ADN63465.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 208
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++++VAQLLFL++E+ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I T
Sbjct: 141 ---------TDIDIHAREILALRARLNEILAKHTGQSLETIAHDT 176
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+ Y
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDY 46
>gi|297808311|ref|XP_002872039.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
lyrata]
gi|297317876|gb|EFH48298.1| hypothetical protein ARALYDRAFT_910322 [Arabidopsis lyrata subsp.
lyrata]
Length = 237
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/133 (69%), Positives = 111/133 (83%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
+A S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI+D S VVVAQLL+L+SE+
Sbjct: 21 TARRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESEN 80
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
KPIHMY+NSPGG VT+GL IYDTMQY+ PI+T C+GQA SMASLLLAAG KG R SL
Sbjct: 81 PSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSL 140
Query: 158 PNSRIMIHQPSGG 170
PN+ +MIHQPSGG
Sbjct: 141 PNATVMIHQPSGG 153
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+A S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP++
Sbjct: 21 TARRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 62
>gi|163793182|ref|ZP_02187158.1| Protease subunit of ATP-dependent Clp protease [alpha
proteobacterium BAL199]
gi|159181828|gb|EDP66340.1| Protease subunit of ATP-dependent Clp protease [alpha
proteobacterium BAL199]
Length = 213
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII VMGPI+D+++SVV AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPINDAVASVVCAQLLFLEAENPTKDIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ +YDTM+YV P I+T C+G A SM SLLL AG G R+ LPN+++MI
Sbjct: 72 YINSPGGIVTSGMAMYDTMEYVRPEISTVCMGHAASMGSLLLTAGAPGKRYCLPNAKVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+I A EII ++++N +YVKH+G SI++I K
Sbjct: 143 ---------SDIEIHAREIIKTRERLNQIYVKHSGRSIDEIEK 176
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII VMGP++
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPIN 46
>gi|114152202|sp|Q2L256.2|CLPP_BORA1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 201
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I Y
Sbjct: 9 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFY 68
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ+V P ++T C G A SM + LLAAG+KG R SLPNSRIMIH
Sbjct: 69 INSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIH 128
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 129 QPSGGAQ---------------------GQA----------------------------- 138
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA+EI++L++++N + ++TG S+E+I T
Sbjct: 139 --------SDIQIQAKEILDLRERLNRILAENTGQSMERIAIDT 174
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 9 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVN 42
>gi|414153433|ref|ZP_11409759.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455112|emb|CCO07662.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 195
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD ++ +V+AQ LFL++E +K IH+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHVADLVIAQFLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ PP++T C+GQA SM S LLAAG KG R++LP +RIMI
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKPPVSTICLGQASSMGSFLLAAGTKGKRYALPMARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ +K +N HTG +EK+ + T
Sbjct: 135 ---------TDIDIHAKEILRMKDLLNEKLAYHTGQPLEKVARDT 170
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPID 38
>gi|257093849|ref|YP_003167490.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046373|gb|ACV35561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 209
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+GRGERAYDIYSRLL+ER++ ++GP++D +++VVAQLLFL++E+ K IH
Sbjct: 16 LVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLVVAQLLFLEAENPDKDIHF 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL +YDTMQ++ P ++T C+GQACSM + LLAAG +G R +LPNSR+MI
Sbjct: 76 YINSPGGSVSAGLSVYDTMQFIKPDVSTLCMGQACSMGAFLLAAGTRGKRFALPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPMGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++L+ ++N L HTG IE+I + T
Sbjct: 147 ---------SDIAIHAKEILSLRAKLNELMALHTGQEIERIERDT 182
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQ+GRGERAYDIYSRLL+ER++ ++GPV+
Sbjct: 16 LVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVN 50
>gi|379713794|ref|YP_005302132.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
massiliae str. AZT80]
gi|383481626|ref|YP_005390541.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
gi|376334440|gb|AFB31672.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
massiliae str. AZT80]
gi|378933965|gb|AFC72468.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
rhipicephali str. 3-7-female6-CWPP]
Length = 201
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE T RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I++Y
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYIY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM SLLL GE+GMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEQGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY KHTG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKHTGQELKHIEKS 168
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIE T RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEPTSRGERAYDIYSRLLKERIIFV 32
>gi|110680063|ref|YP_683070.1| ATP-dependent Clp protease proteolytic subunit [Roseobacter
denitrificans OCh 114]
gi|116243162|sp|Q165F9.1|CLPP_ROSDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|109456179|gb|ABG32384.1| Clp protease, putative [Roseobacter denitrificans OCh 114]
Length = 208
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPAKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++N +YVKHTG +++K+
Sbjct: 142 ---------TDIMIHAAETQKLKDRLNEIYVKHTGQTMKKV 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 44
>gi|268317954|ref|YP_003291673.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
gi|262335488|gb|ACY49285.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodothermus
marinus DSM 4252]
Length = 252
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 144/250 (57%), Gaps = 66/250 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDI+SRLL+ERI+ + PI+D ++++VVAQLL+L SE S++ I++
Sbjct: 36 LVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINI 95
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+ SGL +YDTMQYV PP+AT CVG A SM ++LLAAG KG R +LPNSRIMI
Sbjct: 96 YINSPGGSIDSGLAVYDTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMI 155
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP W G
Sbjct: 156 HQP-----------------------WMSG------------------------------ 162
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
VQGQATDI+I A EI+ +++++N + HTG E+I + V D FW+
Sbjct: 163 ----VQGQATDIEIHAREILKMRERLNEILAYHTGQPKERIAQD-----VDRD----FWL 209
Query: 285 NGLYVKHTGL 294
+ K GL
Sbjct: 210 SAQEAKEYGL 219
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDI+SRLL+ERI+ + P++
Sbjct: 36 LVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPIN 70
>gi|402549260|ref|ZP_10846113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86C]
Length = 204
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + GP++D +S+++VAQLLFL+SE+ +K I +
Sbjct: 8 LVPMVIEQTPRGERSFDIYSRLLKERVIFLSGPVEDYMSNLIVAQLLFLESENPEKDISI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+++GL IYDTMQ++ P I+T C+GQA SM ++LLA GEKG R +LPNSRIMI
Sbjct: 68 YINSPGGSISAGLAIYDTMQFISPSISTLCIGQAASMGAILLAGGEKGKRFALPNSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+++KK +N + KHTG +I+KI K T
Sbjct: 139 ---------SDFEIHAKEILHMKKVVNEILAKHTGQTIKKIEKDT 174
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQT RGER++DIYSRLL+ER+I + GPV Y
Sbjct: 8 LVPMVIEQTPRGERSFDIYSRLLKERVIFLSGPVEDY 44
>gi|296134054|ref|YP_003641301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
gi|296032632|gb|ADG83400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermincola
potens JR]
Length = 194
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD ++++V+AQ+LFL++E K IH+
Sbjct: 3 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDMVANLVIAQMLFLEAEDPDKDIHI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T C+GQA SM S LLAAG KG R++LP +RIMI
Sbjct: 63 YINSPGGVVTAGMAIYDTMQYIKPDVSTICMGQAASMGSFLLAAGTKGKRYALPYTRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 123 HQPLGGVQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ +K +N L KHTG +E I + T
Sbjct: 134 ---------TDIDIHAKEILRMKSVLNELLAKHTGQPVEVIARDT 169
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 3 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPID 37
>gi|15837789|ref|NP_298477.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
9a5c]
gi|18203347|sp|Q9PE41.1|CLPP_XYLFA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|9106157|gb|AAF83997.1|AE003953_1 ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
9a5c]
Length = 208
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++++VAQLLFL++E+ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I T
Sbjct: 141 ---------TDIDIHAREILALRARLNEILAKHTGQSLETIAHDT 176
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+ Y
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDY 46
>gi|170744618|ref|YP_001773273.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
sp. 4-46]
gi|168198892|gb|ACA20839.1| Endopeptidase Clp [Methylobacterium sp. 4-46]
Length = 208
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 138/231 (59%), Gaps = 63/231 (27%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F++SA LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL+
Sbjct: 7 FYNSA-----LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I YINSPGG VTSGL IYDTMQ++ P+AT CVGQA SM SLLLAAGE G R
Sbjct: 62 AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+LPN+RIM+HQPSGG Q GQA
Sbjct: 122 FALPNARIMVHQPSGGFQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A EI LK+++N +YVKHTG + I
Sbjct: 143 -------------------TDILIHAREIEALKRRLNEIYVKHTGRDYDAI 174
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 5/47 (10%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
F++SA LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV Y
Sbjct: 7 FYNSA-----LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDY 48
>gi|415938744|ref|ZP_11555478.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
gi|407759378|gb|EKF69073.1| ATP-dependent Clp protease, proteolytic subunit [Herbaspirillum
frisingense GSF30]
Length = 204
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D++++++VAQLLFL+SE+ K I +
Sbjct: 13 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 73 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 133 HQPLGGAQ---------------------GQA---------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + TG S+E+I K T
Sbjct: 144 ---------SDIEIQAREILYLRERLNSILADKTGRSVEQISKDT 179
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 13 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 47
>gi|212696598|ref|ZP_03304726.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
7454]
gi|325847156|ref|ZP_08169955.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|212676329|gb|EEB35936.1| hypothetical protein ANHYDRO_01138 [Anaerococcus hydrogenalis DSM
7454]
gi|325480936|gb|EGC83982.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 195
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIEQT RGERAYDIYSRLL++RII + GP++D +S +++AQLLFL+S+ K I
Sbjct: 7 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPVEDGVSDIIIAQLLFLESQDPNKDIQF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM Y+ P ++T C+GQA SM ++LL++G KG R SLPNS I+I
Sbjct: 67 YINSPGGVVTAGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNILI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGAQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQAE+I+ +KK++N + +TG +IEKI K T
Sbjct: 138 ---------SDIQIQAEQILKIKKRLNKILSDNTGQTIEKIQKDT 173
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP VIEQT RGERAYDIYSRLL++RII + GPV
Sbjct: 7 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLTGPV 40
>gi|374619902|ref|ZP_09692436.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
gi|374303129|gb|EHQ57313.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium HIMB55]
Length = 205
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 143/239 (59%), Gaps = 58/239 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
+A+ F + LVP+VIEQT RGER++DIYSRLL+ER+I ++GPI+D ++++VVAQL
Sbjct: 1 MAQRFDVGNEQALGLVPMVIEQTSRGERSFDIYSRLLKERVIFIVGPIEDQMANLVVAQL 60
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL+SE+ K IH+YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LL+ G
Sbjct: 61 LFLESENPDKDIHIYINSPGGSVTAGLSIYDTMQFIKPEVSTMCLGQAASMGAFLLSGGT 120
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
KG R LPN+R MIHQPSGG Q GQA
Sbjct: 121 KGKRLILPNARTMIHQPSGGAQ---------------------GQA-------------- 145
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ L++++N L HTG S++ I + T
Sbjct: 146 -----------------------TDIEIQAKEILFLRERLNRLLADHTGQSLDVIEQDT 181
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+A+ F + LVP+VIEQT RGER++DIYSRLL+ER+I ++GP+
Sbjct: 1 MAQRFDVGNEQALGLVPMVIEQTSRGERSFDIYSRLLKERVIFIVGPIE 49
>gi|255261268|ref|ZP_05340610.1| Clp protease [Thalassiobium sp. R2A62]
gi|255103603|gb|EET46277.1| Clp protease [Thalassiobium sp. R2A62]
Length = 209
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +S ++VAQLL L++E+ K I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSQLIVAQLLHLEAENPSKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEKGMR SLPNSR+M+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEKGMRFSLPNSRVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++N +YV+HTG +++K+
Sbjct: 142 ---------TDIMIHAAETQKLKDRLNSIYVRHTGQTLKKV 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 44
>gi|149201013|ref|ZP_01877988.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
TM1035]
gi|149145346|gb|EDM33372.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
TM1035]
Length = 210
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 108/224 (48%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A E LK ++N +YVKHTG +++K+ ++
Sbjct: 143 ---------TDIMIHARETQKLKDRLNEIYVKHTGQTLKKVEEA 177
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPV 45
>gi|398833401|ref|ZP_10591533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. YR522]
gi|398221568|gb|EJN07975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. YR522]
Length = 208
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D +++++VAQLLFL+SE+ K I +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDGMANLIVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG S+E+I K T
Sbjct: 148 ---------SDIEIQAREILYLRERLNAILAEKTGRSVEQIAKDT 183
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 51
>gi|110633522|ref|YP_673730.1| ATP-dependent Clp protease proteolytic subunit [Chelativorans sp.
BNC1]
gi|116243101|sp|Q11J60.1|CLPP1_MESSB RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|110284506|gb|ABG62565.1| ATP-dependent Clp protease proteolytic subunit ClpP [Chelativorans
sp. BNC1]
Length = 210
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG K MR + PN+R+M+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIQPPVSTLCIGQAASMGSLLLCAGHKDMRFATPNARVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N +YVKHTG + I ++
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEIYVKHTGQDYDTIERT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|237755491|ref|ZP_04584113.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237692355|gb|EEP61341.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 201
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 134/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIVIEQT RGERAYDIYSRLL++RII + PIDD ++++VVAQLLFL+SE K I+M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM Y+ P + T C+GQA SM + LL+AG KG R+SLPN+RIMI
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A+EI+ LK+ +N KHTG IEKI T Y +
Sbjct: 139 ---------TDIEIHAKEILRLKRMLNEYLAKHTGQPIEKIEADTERDYFM 180
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIVIEQT RGERAYDIYSRLL++RII + P+
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPID 42
>gi|220927143|ref|YP_002502445.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
nodulans ORS 2060]
gi|254763797|sp|B8IN26.1|CLPP_METNO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|219951750|gb|ACL62142.1| peptidase S14 ClpP [Methylobacterium nodulans ORS 2060]
Length = 209
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 138/231 (59%), Gaps = 63/231 (27%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F++SA LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL+
Sbjct: 7 FYNSA-----LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I YINSPGG VTSGL IYDTMQ++ P+AT CVGQA SM SLLLAAGE G R
Sbjct: 62 AENPKKEISFYINSPGGVVTSGLSIYDTMQFIRCPVATLCVGQAASMGSLLLAAGEPGHR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+LPN+RIM+HQPSGG Q GQA
Sbjct: 122 FALPNARIMVHQPSGGFQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A EI LK+++N +YVKHTG + I
Sbjct: 143 -------------------TDILIHAREIEALKRRLNEIYVKHTGRDYDTI 174
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%), Gaps = 5/47 (10%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
F++SA LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV Y
Sbjct: 7 FYNSA-----LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDY 48
>gi|90021255|ref|YP_527082.1| ATP-dependent Clp protease proteolytic subunit [Saccharophagus
degradans 2-40]
gi|116243165|sp|Q21KA9.1|CLPP_SACD2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|89950855|gb|ABD80870.1| ATP-dependent Clp protease proteolytic subunit ClpP [Saccharophagus
degradans 2-40]
Length = 212
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
+ LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D ++++VVAQ+LFL++E+
Sbjct: 13 NVENTLVPMVVEQTARGERSYDIYSRLLKERVIFLVGQVEDHMANLVVAQMLFLEAENPD 72
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K IH+YINSPGGSVT+GL IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPN
Sbjct: 73 KDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAKGKRFCLPN 132
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
+R MIHQPSGG Q GQA
Sbjct: 133 ARTMIHQPSGGAQ---------------------GQA----------------------- 148
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+EI+ L++++N + HTG +E+I + T
Sbjct: 149 --------------SDIHIQAQEILKLRERLNEIMAGHTGRGVEEIARDT 184
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V
Sbjct: 13 NVENTLVPMVVEQTARGERSYDIYSRLLKERVIFLVGQVE 52
>gi|357384551|ref|YP_004899275.1| ATP-dependent Clp protease proteolytic subunit [Pelagibacterium
halotolerans B2]
gi|351593188|gb|AEQ51525.1| ATP-dependent Clp protease proteolytic subunit [Pelagibacterium
halotolerans B2]
Length = 209
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERA+DIYSRLLRERII V G ++D+++SV+VAQLLFL+SE+ KK I M
Sbjct: 12 LVPMVVEQSNRGERAFDIYSRLLRERIIFVTGVVEDNMASVIVAQLLFLESENPKKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P + T C+GQA SM SLLL AGEK MR +LPN+R+M+
Sbjct: 72 YINSPGGVVTAGLSIYDTMQFIRPKVQTLCMGQAASMGSLLLTAGEKDMRGALPNARVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ IMIH
Sbjct: 132 HQPSGGYQ---------------------GQVTD---------------------IMIH- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A E NLK+++N +YVKH+GL +++
Sbjct: 149 ---------------AREAENLKRRLNEIYVKHSGLEYQQV 174
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGERA+DIYSRLLRERII V G V
Sbjct: 12 LVPMVVEQSNRGERAFDIYSRLLRERIIFVTGVVE 46
>gi|347730688|ref|ZP_08863801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. A2]
gi|347520543|gb|EGY27675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. A2]
Length = 201
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 135/230 (58%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE +GR ERAYDIYSRLL++RII + PIDD ++S++ AQLLFL+SE+ +K I++Y
Sbjct: 3 VPIVIETSGRSERAYDIYSRLLKDRIILLGTPIDDQIASLICAQLLFLESENPEKEIYLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG+VT+G+ IYDTMQY+ P+AT C+GQA SM +LLLAAGE GMRH+LPNSRIMIH
Sbjct: 63 INSPGGAVTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGEPGMRHALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG GQA +
Sbjct: 123 QPSGGFS---------------------GQASDI-------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
IQA E++ +K +N + +HTG +E++ T Y +
Sbjct: 136 -----------DIQAREVLRMKANLNDIMARHTGQPVERVADDTERDYFM 174
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE +GR ERAYDIYSRLL++RII + P+
Sbjct: 3 VPIVIETSGRSERAYDIYSRLLKDRIILLGTPID 36
>gi|71276511|ref|ZP_00652786.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
gi|170729732|ref|YP_001775165.1| ATP-dependent Clp protease proteolytic subunit [Xylella fastidiosa
M12]
gi|226706561|sp|B0U5N1.1|CLPP_XYLFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71162688|gb|EAO12415.1| Peptidase S14, ClpP [Xylella fastidiosa Dixon]
gi|71729635|gb|EAO31739.1| Peptidase S14, ClpP [Xylella fastidiosa Ann-1]
gi|167964525|gb|ACA11535.1| Endopeptidase Clp [Xylella fastidiosa M12]
Length = 208
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++++VAQLLFL++E+ +K I++
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD+ I A EI+ L+ ++N + KHTG S+E I T
Sbjct: 141 ---------TDVDIHAREILALRARLNEILAKHTGQSLETIAHDT 176
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP+ Y
Sbjct: 10 LVPMVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDY 46
>gi|51473702|ref|YP_067459.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
str. Wilmington]
gi|383752479|ref|YP_005427579.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
str. TH1527]
gi|383843314|ref|YP_005423817.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
str. B9991CWPP]
gi|60389549|sp|Q68WL5.1|CLPP_RICTY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|51460014|gb|AAU03977.1| Caseinolytic protease [Rickettsia typhi str. Wilmington]
gi|380759122|gb|AFE54357.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
str. TH1527]
gi|380759961|gb|AFE55195.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia typhi
str. B9991CWPP]
Length = 201
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 IPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQ++ P +AT C+GQACSM SLLL GE GMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A E + +KK +N LY KHT +++ I KS
Sbjct: 134 --------TDIEIHARETLKIKKLLNELYSKHTEQALKHIEKS 168
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
+P+VIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 IPVVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|395792321|ref|ZP_10471759.1| ATP-dependent Clp protease proteolytic subunit [Bartonella vinsonii
subsp. arupensis Pm136co]
gi|423714326|ref|ZP_17688585.1| ATP-dependent Clp protease proteolytic subunit [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395420710|gb|EJF86975.1| ATP-dependent Clp protease proteolytic subunit [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395432835|gb|EJF98810.1| ATP-dependent Clp protease proteolytic subunit [Bartonella vinsonii
subsp. arupensis Pm136co]
Length = 210
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEIIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|345304234|ref|YP_004826136.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
gi|345113467|gb|AEN74299.1| ATP-dependent Clp protease proteolytic subunit [Rhodothermus
marinus SG0.5JP17-172]
Length = 250
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 144/250 (57%), Gaps = 66/250 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDI+SRLL+ERI+ + PI+D ++++VVAQLL+L SE S++ I++
Sbjct: 36 LVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPINDQIANLVVAQLLWLASEDSERDINI 95
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+ SGL +YDTMQYV PP+AT CVG A SM ++LLAAG KG R +LPNSRIMI
Sbjct: 96 YINSPGGSIDSGLAVYDTMQYVAPPVATICVGLAASMGAVLLAAGVKGKRAALPNSRIMI 155
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP W G
Sbjct: 156 HQP-----------------------WMSG------------------------------ 162
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
VQGQATDI+I A EI+ +++++N + HTG E+I + V D FW+
Sbjct: 163 ----VQGQATDIEIHAREILKMRERLNEILAYHTGQPKERIAQD-----VDRD----FWL 209
Query: 285 NGLYVKHTGL 294
+ K GL
Sbjct: 210 SAQEAKEYGL 219
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDI+SRLL+ERI+ + P++
Sbjct: 36 LVPIVIEQTTRGERAYDIFSRLLKERIVIIGTPIN 70
>gi|402819275|ref|ZP_10868844.1| ATP-dependent Clp protease proteolytic subunit ClpP [alpha
proteobacterium IMCC14465]
gi|402511979|gb|EJW22239.1| ATP-dependent Clp protease proteolytic subunit ClpP [alpha
proteobacterium IMCC14465]
Length = 209
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+V+EQT RGERAYDIYSRLL+ER+I V G I+D ++S++ AQLLFL++E+ KK I M
Sbjct: 12 MVPMVVEQTNRGERAYDIYSRLLKERVIFVTGAIEDYMASLITAQLLFLEAENPKKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQY+ PP++T C+GQA SM SLLL AGE+ MR +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGMAIYDTMQYIRPPVSTLCIGQAASMGSLLLCAGEENMRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A+EI++++ ++N +Y HTG ++ I
Sbjct: 143 ---------SDIERHAKEILDMRTRLNKIYCTHTGQDLKTI 174
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+VP+V+EQT RGERAYDIYSRLL+ER+I V G + Y
Sbjct: 12 MVPMVVEQTNRGERAYDIYSRLLKERVIFVTGAIEDY 48
>gi|237653230|ref|YP_002889544.1| ATP-dependent Clp protease proteolytic subunit [Thauera sp. MZ1T]
gi|237624477|gb|ACR01167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thauera sp.
MZ1T]
Length = 212
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++GP++D ++++VAQLLFL+SE+ K I+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIYF 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLAAGEKG R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKPNVSTLCIGQAASMGAFLLAAGEKGKRFILPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ L+ ++N + KHTG ++E+I K T
Sbjct: 150 ---------SDIEIHAREILYLRSRLNDMLSKHTGQALERIEKDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++GPV+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGPVN 53
>gi|56478265|ref|YP_159854.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
gi|67460188|sp|Q5P161.1|CLPP_AZOSE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56314308|emb|CAI08953.1| ATP-dependent Clp protease proteolytic subunit [Aromatoleum
aromaticum EbN1]
Length = 212
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GP++D ++++VAQLLFL+SE+ K ++
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLIVAQLLFLESENPDKDVYF 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV+SG+ IYDTMQ++ P ++T C+GQA SM S LLAAGEKG R LPNSR+MI
Sbjct: 79 YINSPGGSVSSGMAIYDTMQFIKPSVSTLCIGQAASMGSFLLAAGEKGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ ++ ++N + KHTG IE+I K T
Sbjct: 150 ---------SDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDT 185
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GPV+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVN 53
>gi|395782017|ref|ZP_10462426.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
rattimassiliensis 15908]
gi|395419868|gb|EJF86154.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
rattimassiliensis 15908]
Length = 206
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 67 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGFQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 138 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERT 172
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 41
>gi|18420643|ref|NP_568427.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis
thaliana]
gi|75309225|sp|Q9FN42.1|CLPP2_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial; AltName: Full=Endopeptidase ClpP2;
AltName: Full=nClpP7; Flags: Precursor
gi|9759372|dbj|BAB09831.1| ATP-dependent protease proteolytic subunit ClpP-like protein
[Arabidopsis thaliana]
gi|26452073|dbj|BAC43126.1| putative ATP-dependent protease proteolytic subunit ClpP
[Arabidopsis thaliana]
gi|28950803|gb|AAO63325.1| At5g23140 [Arabidopsis thaliana]
gi|332005743|gb|AED93126.1| ATP-dependent Clp protease proteolytic subunit 2 [Arabidopsis
thaliana]
Length = 241
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 108/126 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI+D S VVVAQLL+L+SE+ KPIHM
Sbjct: 32 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHM 91
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGG VT+GL IYDTMQY+ PI+T C+GQA SMASLLLAAG KG R SLPN+ +MI
Sbjct: 92 YLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMASLLLAAGAKGQRRSLPNATVMI 151
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 152 HQPSGG 157
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP++
Sbjct: 32 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPIN 66
>gi|375106291|ref|ZP_09752552.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium JOSHI_001]
gi|374667022|gb|EHR71807.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Burkholderiales bacterium JOSHI_001]
Length = 202
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+GRGERAYDIYSRLLRERII ++GP++D+ +++VVAQLLFL+SE+ K I +
Sbjct: 11 MVPIVIEQSGRGERAYDIYSRLLRERIIFLVGPVNDATANLVVAQLLFLESENPDKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C+G A SM S LL AG KG R +LPNS+IMI
Sbjct: 71 YINSPGGSVSAGMSIFDTMQFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSKIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A EI+ ++Q+N +Y + TG ++EKI
Sbjct: 142 ---------TDIEIHAREILKTREQLNKIYAERTGQTLEKI 173
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+GRGERAYDIYSRLLRERII ++GPV+
Sbjct: 11 MVPIVIEQSGRGERAYDIYSRLLRERIIFLVGPVN 45
>gi|452125564|ref|ZP_21938148.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
gi|451924794|gb|EMD74935.1| ATP-dependent Clp protease proteolytic subunit [Bordetella holmesii
F627]
Length = 217
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I Y
Sbjct: 25 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISFY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ+V P ++T C G A SM + LLAAG+KG R SLPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFSLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA+EI++L++++N + ++TG +E+I T
Sbjct: 155 --------SDIQIQAKEILDLRERLNRILAENTGQPVERIAIDT 190
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVVEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|395791168|ref|ZP_10470626.1| ATP-dependent Clp protease proteolytic subunit [Bartonella alsatica
IBS 382]
gi|395408531|gb|EJF75141.1| ATP-dependent Clp protease proteolytic subunit [Bartonella alsatica
IBS 382]
Length = 207
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERI+ + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIVFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I K+
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIEKT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERI+ + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIVFINGPVE 45
>gi|407802230|ref|ZP_11149072.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
sp. W11-5]
gi|407023905|gb|EKE35650.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
sp. W11-5]
Length = 215
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 23 LVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQMLFLESENPDKDIHL 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLAAGE+G R +LPNSRIMI
Sbjct: 83 YINSPGGSVTAGMSIYDTMQFIKPAVSTMCIGQAASMGAFLLAAGEQGKRFALPNSRIMI 142
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 143 HQPLGGFQ---------------------GQA---------------------------- 153
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ +K ++N L HTG+ +E++ + T
Sbjct: 154 ---------SDIEIHAREILKIKSRLNELLSHHTGMDLERVERDT 189
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 23 LVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVE 57
>gi|83311891|ref|YP_422155.1| protease subunit of ATP-dependent Clp protease [Magnetospirillum
magneticum AMB-1]
gi|82946732|dbj|BAE51596.1| Protease subunit of ATP-dependent Clp protease [Magnetospirillum
magneticum AMB-1]
Length = 244
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 134/223 (60%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G + D ++S++ AQLLFL+SE+ K I
Sbjct: 45 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVYDEVASLICAQLLFLESENPSKDIAF 104
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T C+GQA SM SLL+ AGEKG R SLPNSRIM+
Sbjct: 105 YINSPGGVVTSGLAIYDTMQYIRPKVSTVCIGQAASMGSLLMTAGEKGKRFSLPNSRIMV 164
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 165 HQPSGGAQ---------------------GQA---------------------------- 175
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+ ++N +YV+HTG ++ I K
Sbjct: 176 ---------TDIEIQAREILALRARLNNIYVEHTGQPLDVIEK 209
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 45 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQV 78
>gi|237745591|ref|ZP_04576071.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
gi|229376942|gb|EEO27033.1| ATP-dependent Clp protease [Oxalobacter formigenes HOxBLS]
Length = 207
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 143/237 (60%), Gaps = 60/237 (25%)
Query: 35 FHHSA--TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLF 92
FH SA T ++P+VIEQ+GRGERA+DIYSRLL+ERII ++GP+ D ++++VAQLLF
Sbjct: 4 FHDSALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLF 63
Query: 93 LQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152
L+SE+ +K I +YINSPGGSV++G+ IYDTMQ++ P ++T C G A SM + LLAAG KG
Sbjct: 64 LESENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKG 123
Query: 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
R SLPNSRIMIHQPSGG Q GQA
Sbjct: 124 KRFSLPNSRIMIHQPSGGAQ---------------------GQA---------------- 146
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ L++++NG+ ++TG +E+I + T
Sbjct: 147 ---------------------TDIEIHAREILYLRERLNGILAENTGKPVEQIARDT 182
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 39/47 (82%), Gaps = 2/47 (4%)
Query: 371 FHHSA--TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
FH SA T ++P+VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 4 FHDSALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVT 50
>gi|15604378|ref|NP_220894.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Madrid E]
gi|383487344|ref|YP_005405024.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. GvV257]
gi|383487923|ref|YP_005405602.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Chernikova]
gi|383488769|ref|YP_005406447.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Katsinyian]
gi|383489608|ref|YP_005407285.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Dachau]
gi|383499749|ref|YP_005413110.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. BuV67-CWPP]
gi|383500585|ref|YP_005413945.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. RpGvF24]
gi|386082369|ref|YP_005998946.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Rp22]
gi|6225160|sp|Q9ZD29.1|CLPP_RICPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|3861070|emb|CAA14970.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT (clpP) [Rickettsia
prowazekii str. Madrid E]
gi|292572133|gb|ADE30048.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Rp22]
gi|380757709|gb|AFE52946.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. GvV257]
gi|380758282|gb|AFE53518.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. RpGvF24]
gi|380760802|gb|AFE49324.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Chernikova]
gi|380761648|gb|AFE50169.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Katsinyian]
gi|380762495|gb|AFE51015.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. BuV67-CWPP]
gi|380763331|gb|AFE51850.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
prowazekii str. Dachau]
Length = 201
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 135/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+VIEQT RGERAYDIYSRLL+ERII V ++D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQ++ P +AT C+GQACSM SLLL GE GMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A E + +K+ +N LY KHT ++ I KS
Sbjct: 134 --------TDIEIHARETLKIKRLLNELYSKHTKQELKYIEKS 168
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+VIEQT RGERAYDIYSRLL+ERII V V
Sbjct: 4 VPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVE 37
>gi|288958758|ref|YP_003449099.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
B510]
gi|288911066|dbj|BAI72555.1| ATP-dependent Clp protease, protease subunit [Azospirillum sp.
B510]
Length = 208
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLL+ERII ++G ++D+++S++ +QLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPNKDIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM SLLLAAG G R SLPNSRIMI
Sbjct: 71 YINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ L+ ++N +YVKHTG ++ I
Sbjct: 142 ---------SDIEIQAQEILKLRSRLNDIYVKHTGQDLDTI 173
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLL+ERII ++G V+
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVN 45
>gi|374292313|ref|YP_005039348.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
lipoferum 4B]
gi|357424252|emb|CBS87119.1| ATP-dependent Clp protease proteolytic subunit [Azospirillum
lipoferum 4B]
Length = 207
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLL+ERII ++G ++D+++S++ +QLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPNKDIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM SLLLAAG G R SLPNSRIMI
Sbjct: 71 YINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ L+ ++N +YVKHTG ++ I
Sbjct: 142 ---------SDIEIQAQEILKLRSRLNDIYVKHTGQDLDTI 173
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLL+ERII ++G V+
Sbjct: 11 LVPMVIEQTNRGERAYDIYSRLLKERIIFLIGGVN 45
>gi|395778319|ref|ZP_10458831.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
elizabethae Re6043vi]
gi|423715370|ref|ZP_17689594.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
elizabethae F9251]
gi|395417527|gb|EJF83864.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
elizabethae Re6043vi]
gi|395430206|gb|EJF96257.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
elizabethae F9251]
Length = 210
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|188996270|ref|YP_001930521.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931337|gb|ACD65967.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 201
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 133/231 (57%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIVIEQT RGERAYDIYSRLL++RII + PIDD ++++VVAQLLFL+SE K I+M
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHIANLVVAQLLFLESEDPDKDIYM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM Y+ P + T C+GQA SM + LL+AG KG R+SLPN+RIMI
Sbjct: 68 YINSPGGVVTAGLAIYDTMNYIKPDVVTICMGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A EI+ LK+ +N KHTG IEKI T Y +
Sbjct: 139 ---------TDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFM 180
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIVIEQT RGERAYDIYSRLL++RII + P+
Sbjct: 8 LIPIVIEQTPRGERAYDIYSRLLKDRIILLGTPID 42
>gi|108762291|ref|YP_630243.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus xanthus
DK 1622]
gi|338533213|ref|YP_004666547.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
gi|116270726|sp|Q1DAT0.1|CLPP1_MYXXD RecName: Full=ATP-dependent Clp protease proteolytic subunit 1;
AltName: Full=Endopeptidase Clp 1
gi|108466171|gb|ABF91356.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Myxococcus
xanthus DK 1622]
gi|337259309|gb|AEI65469.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus fulvus
HW-1]
Length = 206
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 140/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDIYSRLL++RI+ + IDD +++V+VAQLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM ++LL AG KG R++LP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ +K ++N L VKHTG SIE++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFM 177
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VP VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVML 34
>gi|383501651|ref|YP_005415010.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
australis str. Cutlack]
gi|378932662|gb|AFC71167.1| ATP-dependent Clp protease proteolytic subunit [Rickettsia
australis str. Cutlack]
Length = 201
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 136/223 (60%), Gaps = 58/223 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLL+ERII V I+D +++++VAQLLFL++E+ KK I+MY
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFVCSTIEDHMANLIVAQLLFLEAENPKKDIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P +AT C+GQACSM S LL G +GMR+SLP+SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSFLLCGGTQGMRYSLPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG + GQA
Sbjct: 124 QPSGGYK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A+E + +K+ +N LY K+TG ++ I KS
Sbjct: 134 --------TDIEIHAQETLKIKRLLNELYSKNTGQELKHIEKS 168
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/29 (89%), Positives = 27/29 (93%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIVIEQT RGERAYDIYSRLL+ERII V
Sbjct: 4 VPIVIEQTSRGERAYDIYSRLLKERIIFV 32
>gi|339503121|ref|YP_004690541.1| ATP-dependent Clp protease proteolytic subunit ClpP [Roseobacter
litoralis Och 149]
gi|338757114|gb|AEI93578.1| ATP-dependent Clp protease proteolytic subunit ClpP [Roseobacter
litoralis Och 149]
Length = 208
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++++ K I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEADNPAKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGE GMR SLPNSRIM+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGEAGMRFSLPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGYQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++N +YVKHTG +++K+
Sbjct: 142 ---------TDIMIHAAETQKLKDRLNEIYVKHTGQTLKKV 173
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 44
>gi|224081363|ref|XP_002306383.1| predicted protein [Populus trichocarpa]
gi|118481948|gb|ABK92906.1| unknown [Populus trichocarpa]
gi|222855832|gb|EEE93379.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/133 (68%), Positives = 111/133 (83%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S T + L+P+VIE + RGERAYDI+SRLL+ERI+C+ GPI+D S+VVVAQLLFL+SE+
Sbjct: 28 STTRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPINDDTSNVVVAQLLFLESEN 87
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
KPIHMY+NSPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLA+G KG R +L
Sbjct: 88 PSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPVNTICLGQAASMASLLLASGAKGERKAL 147
Query: 158 PNSRIMIHQPSGG 170
PN+ IMIHQPSGG
Sbjct: 148 PNATIMIHQPSGG 160
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S T + L+P+VIE + RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 28 STTRAYSLIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIN 69
>gi|407776940|ref|ZP_11124211.1| ATP-dependent Clp protease proteolytic subunit [Nitratireductor
pacificus pht-3B]
gi|407301105|gb|EKF20226.1| ATP-dependent Clp protease proteolytic subunit [Nitratireductor
pacificus pht-3B]
Length = 210
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GPI+D ++S+V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMASLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPAVSTLCIGQAASMGSLLLCAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II LK+++N +YV+HTG E I K+
Sbjct: 142 ---------SDIERHAQDIIKLKRRLNEVYVEHTGQDYETIEKT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIE 45
>gi|254460423|ref|ZP_05073839.1| Clp protease [Rhodobacterales bacterium HTCC2083]
gi|206677012|gb|EDZ41499.1| Clp protease [Rhodobacteraceae bacterium HTCC2083]
Length = 210
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AGEK MR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGEKDMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YV+HTG +++K+
Sbjct: 143 ---------TDIMIHAQETQKLKTRLNEIYVQHTGQTLKKV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLNGPV 45
>gi|192360657|ref|YP_001982472.1| ATP-dependent Clp protease proteolytic subunit [Cellvibrio
japonicus Ueda107]
gi|190686822|gb|ACE84500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Cellvibrio
japonicus Ueda107]
Length = 214
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 140/233 (60%), Gaps = 58/233 (24%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
S ++ LVPIVIEQT RGER++DIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E
Sbjct: 9 QSPIINSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAE 68
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R
Sbjct: 69 NPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLNAGAEGKRFC 128
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPNSR+MIHQPSGG Q GQA
Sbjct: 129 LPNSRVMIHQPSGGAQ---------------------GQA-------------------- 147
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+EI+ ++ ++N L H+G IE+I T
Sbjct: 148 -----------------SDIHIQAQEILKIRARLNELMAHHSGQPIERIEVDT 183
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 36/45 (80%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
S ++ LVPIVIEQT RGER++DIYSRLL+ER+I ++GPV Y
Sbjct: 9 QSPIINSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDY 53
>gi|343504824|ref|ZP_08742498.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
ichthyoenteri ATCC 700023]
gi|343510911|ref|ZP_08748102.1| ATP-dependent Clp protease proteolytic subunit [Vibrio scophthalmi
LMG 19158]
gi|343517340|ref|ZP_08754346.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. N418]
gi|342793664|gb|EGU29454.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. N418]
gi|342799857|gb|EGU35407.1| ATP-dependent Clp protease proteolytic subunit [Vibrio scophthalmi
LMG 19158]
gi|342810440|gb|EGU45523.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
ichthyoenteri ATCC 700023]
Length = 204
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 141/236 (59%), Gaps = 58/236 (24%)
Query: 34 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFL 93
++ T+ LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D+++++VVAQLLFL
Sbjct: 2 SYQEQNTIMNALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDNMANLVVAQLLFL 61
Query: 94 QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 153
+SE+ K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C GQACSM + LLA G KG
Sbjct: 62 ESENPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTLCTGQACSMGAFLLAGGAKGK 121
Query: 154 RHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 213
R +LPNSR+MIHQP GG Q GQA
Sbjct: 122 RFALPNSRVMIHQPLGGFQ---------------------GQA----------------- 143
Query: 214 SLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+++K+++N L +HTG ++ I + T
Sbjct: 144 --------------------SDIQIHAQEILSIKEKLNNLLAEHTGQPMDIIERDT 179
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 370 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ T+ LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 2 SYQEQNTIMNALVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 47
>gi|6685315|sp|Q9X6W8.1|CLPP_AZOBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|5002357|gb|AAD37435.1|AF150957_2 heat-shock protein ClpP [Azospirillum brasilense]
Length = 210
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 137/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER YDIYSRLL+ERII ++G ++D+++S++ +QLLFL+SE+ K I +
Sbjct: 11 LVPMVIEQTNRGERGYDIYSRLLKERIIFLIGGVNDAVASLICSQLLFLESENPSKDIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM SLLLAAG G R SLPNSRIMI
Sbjct: 71 YINSPGGYVSAGLAIYDTMQYIRPQVSTVCMGQAASMGSLLLAAGAPGKRFSLPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ L+ ++N +YVKHTG S++ I
Sbjct: 142 ---------SDIEIQAQEILKLRSRLNDIYVKHTGQSLDTI 173
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER YDIYSRLL+ERII ++G V+
Sbjct: 11 LVPMVIEQTNRGERGYDIYSRLLKERIIFLIGGVN 45
>gi|254492068|ref|ZP_05105244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
thiooxidans DMS010]
gi|224462732|gb|EEF79005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Methylophaga
thiooxydans DMS010]
Length = 212
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVPIV+EQT RGER+YDIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K
Sbjct: 13 IQNALVPIVVEQTSRGERSYDIYSRLLKERVIFLVGPVEDQMANLIVAQLLFLESENPDK 72
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
IH+YINSPGG+VT+G+ IYDTMQ+V P ++T C+GQA SM ++LLA G +G RH LPNS
Sbjct: 73 DIHLYINSPGGAVTAGMAIYDTMQFVKPNVSTLCIGQAASMGAVLLAGGAEGKRHCLPNS 132
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
RIM+HQP GG Q GQA
Sbjct: 133 RIMVHQPLGGFQ---------------------GQAS----------------------- 148
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
D I A+EI++++ ++NG+ HTG IE I + T
Sbjct: 149 --------------DFDIHAKEILSIRDRLNGILAHHTGQDIEAIRRDT 183
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVPIV+EQT RGER+YDIYSRLL+ER+I ++GPV
Sbjct: 13 IQNALVPIVVEQTSRGERSYDIYSRLLKERVIFLVGPVE 51
>gi|399038248|ref|ZP_10734549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF122]
gi|398063911|gb|EJL55618.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF122]
Length = 209
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|85704731|ref|ZP_01035832.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
217]
gi|85670549|gb|EAQ25409.1| Protease subunit of ATP-dependent Clp protease [Roseovarius sp.
217]
Length = 210
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLL AGE GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGEPGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A E LK ++N +YV+HTG +++K+ ++
Sbjct: 143 ---------TDIMIHARETQKLKDRLNEIYVRHTGQTLKKVEEA 177
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPV 45
>gi|395789946|ref|ZP_10469454.1| ATP-dependent Clp protease proteolytic subunit [Bartonella taylorii
8TBB]
gi|395428168|gb|EJF94250.1| ATP-dependent Clp protease proteolytic subunit [Bartonella taylorii
8TBB]
Length = 207
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQDYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|424863302|ref|ZP_18287215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86A]
gi|400757923|gb|EJP72134.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86A]
Length = 200
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 141/229 (61%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ + L+P+VIEQT RGER++DIYSRLL+ER+I + GPIDD +S++VVAQLLFL+SE+ +K
Sbjct: 4 IQQALIPMVIEQTPRGERSFDIYSRLLKERVIFLSGPIDDYISNLVVAQLLFLESENPEK 63
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGGS+++GL IYDTMQ+V P I+T C+GQA SM +LLLA G++ R +LPNS
Sbjct: 64 DISIYINSPGGSISAGLAIYDTMQFVKPSISTMCIGQAASMGALLLAGGDEKKRFALPNS 123
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
RIMIHQP GG Q GQA
Sbjct: 124 RIMIHQPLGGFQ---------------------GQA------------------------ 138
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+++KK +N + KHTG +I+KI K T
Sbjct: 139 -------------SDFEIHAKEILHMKKIVNEILAKHTGQTIKKIEKDT 174
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 34/41 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+ + L+P+VIEQT RGER++DIYSRLL+ER+I + GP+ Y
Sbjct: 4 IQQALIPMVIEQTPRGERSFDIYSRLLKERVIFLSGPIDDY 44
>gi|409436886|ref|ZP_11264045.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Rhizobium mesoamericanum STM3625]
gi|408751360|emb|CCM75199.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Rhizobium mesoamericanum STM3625]
Length = 202
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 63 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 134 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 168
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV + T
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMAT 42
>gi|395764673|ref|ZP_10445297.1| ATP-dependent Clp protease proteolytic subunit [Bartonella sp.
DB5-6]
gi|395414210|gb|EJF80659.1| ATP-dependent Clp protease proteolytic subunit [Bartonella sp.
DB5-6]
Length = 207
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQDYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|358637944|dbj|BAL25241.1| ATP-dependent Clp protease proteolytic subunit [Azoarcus sp. KH32C]
Length = 212
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ER++ ++GP++D ++++VAQLLFL+SE+ K I
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDVTANLIVAQLLFLESENPDKDIFF 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+GQA SM S LLAAG KG R LPNSR+MI
Sbjct: 79 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCIGQAASMGSFLLAAGAKGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+N++ ++N + KHTG +E+I K T
Sbjct: 150 ---------SDIEIHAREILNIRARLNEMLAKHTGQPVERIEKDT 185
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ER++ ++GPV+
Sbjct: 19 MVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVN 53
>gi|333977877|ref|YP_004515822.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821358|gb|AEG14021.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 197
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD ++++V+AQ+LFL++E +K IH
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHF 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S LLAAG KG R++LP +RIM+
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKPDVSTICLGQAASMGSFLLAAGAKGKRYALPYARIML 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A EI+ +K +N L KHTG EKI + T
Sbjct: 135 ---------TEIEIHAREILRIKDILNELLAKHTGQPREKIARDT 170
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPID 38
>gi|240850274|ref|YP_002971667.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
grahamii as4aup]
gi|240267397|gb|ACS50985.1| ATP-dependent Clp protease proteolytic subunit ClpP [Bartonella
grahamii as4aup]
Length = 210
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYEIIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|405379887|ref|ZP_11033732.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF142]
gi|397323502|gb|EJJ27895.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
CF142]
Length = 209
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|395780056|ref|ZP_10460523.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
washoensis 085-0475]
gi|395419323|gb|EJF85623.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
washoensis 085-0475]
Length = 210
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQDYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|302035647|ref|YP_003795969.1| ATP-dependent Clp protease proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
gi|300603711|emb|CBK40042.1| ATP-dependent Clp protease, proteolytic subunit clpP [Candidatus
Nitrospira defluvii]
Length = 211
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RII + PIDD +++++AQLLFL++E +K I++
Sbjct: 2 LVPIVIEQTNRGERAYDIYSRLLKDRIIFLGAPIDDVFANLIIAQLLFLEAEDPEKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQYV P I T C+GQA SM + LL AG KG R++LPN+R+MI
Sbjct: 62 YINSPGGSVTAGLGIYDTMQYVKPAINTICLGQAASMGAFLLTAGTKGKRYALPNARVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPMGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
T+I I A EI+ +++++N + KHTG ++KI + T Y +
Sbjct: 133 ---------TEIDIHAREILKIRERLNEIMAKHTGQPLDKISQDTERDYFM 174
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 33/45 (73%), Gaps = 5/45 (11%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
LVPIVIEQT RGERAYDIYSRLL++RII + PI FAN
Sbjct: 2 LVPIVIEQTNRGERAYDIYSRLLKDRIIFLGA-----PIDDVFAN 41
>gi|409406436|ref|ZP_11254898.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
gi|386434985|gb|EIJ47810.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum sp.
GW103]
Length = 208
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D++++++VAQLLFL+SE+ K I +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG ++E+I K T
Sbjct: 148 ---------SDIEIQAREILYLRERLNTILAEKTGRTVEQISKDT 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 51
>gi|323140768|ref|ZP_08075687.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414786|gb|EFY05586.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Phascolarctobacterium succinatutens YIT 12067]
Length = 197
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQ+ RGER+YDIYSRLL++RI+ V GPIDD++++VV+AQLLFL+SE K IH+Y
Sbjct: 4 VPIVVEQSSRGERSYDIYSRLLKDRIVFVTGPIDDNMANVVIAQLLFLESEDPDKDIHLY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV++G+ IYDTMQY+ P ++T C+G A SMAS+LLAAG G R +LP SR+MIH
Sbjct: 64 INSPGGSVSAGMAIYDTMQYIKPDVSTICMGMAASMASVLLAAGAPGKRFALPYSRVMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A EI+ +++++N + KHTG ++EKI T
Sbjct: 134 --------TEIEIHAREILRIREEMNQVLAKHTGQTVEKIAADT 169
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+ RGER+YDIYSRLL++RI+ V GP+
Sbjct: 4 VPIVVEQSSRGERSYDIYSRLLKDRIVFVTGPID 37
>gi|395787474|ref|ZP_10467075.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
birtlesii LL-WM9]
gi|395411898|gb|EJF78419.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
birtlesii LL-WM9]
Length = 203
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 67 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGFQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 138 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQDYEVIERT 172
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 7 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 41
>gi|163868071|ref|YP_001609275.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
tribocorum CIP 105476]
gi|189082448|sp|A9ISA4.1|CLPP_BART1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|161017722|emb|CAK01280.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
tribocorum CIP 105476]
Length = 210
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQGYEVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|310816210|ref|YP_003964174.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
vulgare Y25]
gi|385233715|ref|YP_005795057.1| ATP-dependent Clp protease proteolytic subunit [Ketogulonicigenium
vulgare WSH-001]
gi|308754945|gb|ADO42874.1| Protease subunit of ATP-dependent Clp protease [Ketogulonicigenium
vulgare Y25]
gi|343462626|gb|AEM41061.1| ATP-dependent Clp protease proteolytic subunit [Ketogulonicigenium
vulgare WSH-001]
Length = 207
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V G ++D +S ++VAQLL L++E+ KK I M
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGVVEDGMSQLIVAQLLHLEAENPKKEISM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLLAAGE GMR+SLPNSR+M+
Sbjct: 71 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLAAGEAGMRYSLPNSRVMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ IMIH
Sbjct: 131 HQPSGGFQ---------------------GQVTD---------------------IMIH- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A E LK+++N +YVKHTG S E +
Sbjct: 148 ---------------ARESEKLKRRLNEIYVKHTGQSYEAV 173
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V G V
Sbjct: 11 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGVVE 45
>gi|125591043|gb|EAZ31393.1| hypothetical protein OsJ_15521 [Oryza sativa Japonica Group]
Length = 221
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 132/218 (60%), Gaps = 58/218 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIE T RGERAYDI+SRLL+ERI+C+ GPI D +S+VVAQLLFL+SE+ KP+H+YIN
Sbjct: 1 MVIEHTSRGERAYDIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+GL IYDTMQY+ P+ T C+GQA SMASLLLAAG +G R +LPN+R+MIHQP
Sbjct: 61 SPGGVVTAGLAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG GQA
Sbjct: 121 SGGAS---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I A+EI+ ++ ++N +Y KHT +I++I
Sbjct: 129 ------SDIAIHAKEILKVRDRLNKIYAKHTSQAIDRI 160
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VIE T RGERAYDI+SRLL+ERI+C+ GP++
Sbjct: 1 MVIEHTSRGERAYDIFSRLLKERIVCIHGPIT 32
>gi|359796110|ref|ZP_09298715.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
gi|359365796|gb|EHK67488.1| ATP-dependent Clp protease proteolytic subunit [Achromobacter
arsenitoxydans SY8]
Length = 217
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 138/220 (62%), Gaps = 58/220 (26%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ I+DTMQ+V P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIFDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DIQIQA EI++L++++N + ++TG S+E+I
Sbjct: 155 --------SDIQIQAREILDLRERLNRILSQNTGQSMERI 186
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|429209761|ref|ZP_19200988.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sp.
AKP1]
gi|428187304|gb|EKX55889.1| ATP-dependent Clp protease proteolytic subunit [Rhodobacter sp.
AKP1]
Length = 210
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 131/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSR+L+ERII + GP+ D +SS++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPVHDGMSSLICAQLLFLEAENPSKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AG KGMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGGKGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK+++N +YV+HTG +E +
Sbjct: 143 ---------TDIMIHARETEKLKRRLNEIYVRHTGQDLETV 174
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDIYSR+L+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRMLKERIIFLSGPV 45
>gi|300311895|ref|YP_003775987.1| ATP-dependent Clp protease proteolytic subunit [Herbaspirillum
seropedicae SmR1]
gi|124483356|emb|CAM32551.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae]
gi|300074680|gb|ADJ64079.1| ATP-dependent Clp protease (proteolytic subunit) protein
[Herbaspirillum seropedicae SmR1]
Length = 208
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D++++++VAQLLFL+SE+ K I +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG ++E+I K T
Sbjct: 148 ---------SDIEIQAREILYLRERLNTILAEKTGRTVEQISKDT 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 51
>gi|163857103|ref|YP_001631401.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii
DSM 12804]
gi|226706441|sp|A9IR54.1|CLPP_BORPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|163260831|emb|CAP43133.1| ATP-dependent Clp protease proteolytic subunit [Bordetella petrii]
Length = 217
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ ++++VAQLLFL+SE+ K I +Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENPDKDISLY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ+V P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + ++TG +E+I T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILAENTGQPVERIAVDT 190
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|118594831|ref|ZP_01552178.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
gi|118440609|gb|EAV47236.1| Peptidase S14, ClpP [Methylophilales bacterium HTCC2181]
Length = 209
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GP+DD ++VVVAQLLFL++E+ K I +Y
Sbjct: 16 IPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANVVVAQLLFLEAENPDKDISLY 75
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQ++ P I+T C+GQA SM +LLL AG R SLPNSR+MIH
Sbjct: 76 INSPGGSVTAGMAIYDTMQFIKPDISTLCIGQAASMGALLLTAGAAKKRFSLPNSRVMIH 135
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 136 QPLGGFQ---------------------GQA----------------------------- 145
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK+++N + +H+G S+EK+ K T
Sbjct: 146 --------SDIEIHAKEILYLKEKLNKIMAEHSGQSLEKVSKDT 181
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 32/34 (94%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GPV
Sbjct: 16 IPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVD 49
>gi|161511142|ref|NP_539791.2| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. 16M]
gi|225852610|ref|YP_002732843.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
ATCC 23457]
gi|256263897|ref|ZP_05466429.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 2 str. 63/9]
gi|260565631|ref|ZP_05836115.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. 16M]
gi|265991190|ref|ZP_06103747.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. Rev.1]
gi|265995026|ref|ZP_06107583.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 3 str. Ether]
gi|384211474|ref|YP_005600556.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
M5-90]
gi|384408582|ref|YP_005597203.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
M28]
gi|384445168|ref|YP_005603887.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
NI]
gi|21759068|sp|Q8YHC8.2|CLPP_BRUME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763784|sp|C0RJ81.1|CLPP_BRUMB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|225640975|gb|ACO00889.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
ATCC 23457]
gi|260151699|gb|EEW86793.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. 16M]
gi|262766139|gb|EEZ11928.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 3 str. Ether]
gi|263001974|gb|EEZ14549.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 1 str. Rev.1]
gi|263094029|gb|EEZ17963.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
bv. 2 str. 63/9]
gi|326409129|gb|ADZ66194.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
M28]
gi|326538837|gb|ADZ87052.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
M5-90]
gi|349743159|gb|AEQ08702.1| ATP-dependent Clp protease proteolytic subunit [Brucella melitensis
NI]
Length = 209
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP++D +S +V AQLLFL++E+ KK I+M
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKEINM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG G R++L N+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALLNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YVKHTG + I ++
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVKHTGRDYDTIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVE 45
>gi|322794945|gb|EFZ17835.1| hypothetical protein SINV_12459 [Solenopsis invicta]
Length = 130
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 107/188 (56%), Positives = 121/188 (64%), Gaps = 58/188 (30%)
Query: 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQ 137
+ D ++S V+AQLLFLQSESSK PIH+YINSPGGSVT+GLGIYDTMQYVLPPI+TWCVGQ
Sbjct: 1 VTDVVASAVIAQLLFLQSESSKNPIHLYINSPGGSVTAGLGIYDTMQYVLPPISTWCVGQ 60
Query: 138 ACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQAC 197
ACSMASLLLAAG KGMRHSLPN+RIMIHQPSGGVQ GQA
Sbjct: 61 ACSMASLLLAAGTKGMRHSLPNARIMIHQPSGGVQ---------------------GQA- 98
Query: 198 SMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
TDIQIQA EI+ LK+QIN LYVKH
Sbjct: 99 ------------------------------------TDIQIQATEILKLKQQINELYVKH 122
Query: 258 TGLSIEKI 265
TG ++++I
Sbjct: 123 TGQNLDEI 130
>gi|254455562|ref|ZP_05068991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Pelagibacter sp. HTCC7211]
gi|207082564|gb|EDZ59990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Pelagibacter sp. HTCC7211]
Length = 203
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ERII + G I+D+++S+V AQLLFL++E KK I++
Sbjct: 12 LVPMVVEQSNKGERAYDIYSRLLKERIIFLTGQINDNVASLVTAQLLFLEAEDPKKEIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GLGIYDTMQYV P I+T C+GQA SM S LLAAG KG R SLPNSR+M+
Sbjct: 72 YINSPGGLVTAGLGIYDTMQYVKPDISTLCIGQAASMGSFLLAAGTKGKRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQ I IH
Sbjct: 132 HQPSAGFQ---------------------GQVTD---------------------IEIH- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
A E+ +LKK++N +Y KHTG S++++
Sbjct: 149 ---------------ANEVSSLKKRLNEIYSKHTGKSVDEV 174
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ +GERAYDIYSRLL+ERII + G ++
Sbjct: 12 LVPMVVEQSNKGERAYDIYSRLLKERIIFLTGQIN 46
>gi|342214320|ref|ZP_08707021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. oral taxon 780 str. F0422]
gi|341594551|gb|EGS37240.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Veillonella
sp. oral taxon 780 str. F0422]
Length = 199
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQTGRGER+YDIYSRLL++RII + GPIDD++++ +VAQLLFL+SE K IH+Y
Sbjct: 5 VPIVVEQTGRGERSYDIYSRLLKDRIILLSGPIDDTVANSIVAQLLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ IYDTMQY+ P ++T CVG A SM SLLL AG G R++LP+SRIMIH
Sbjct: 65 INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGSLLLTAGAPGKRYALPHSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGVQ GQA
Sbjct: 125 QPLGGVQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
++I+I A EI+ L++++NG+ HTG IE I + T
Sbjct: 135 --------SEIEIHAREILRLREELNGVLAYHTGQPIEVIAQDT 170
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQTGRGER+YDIYSRLL++RII + GP+
Sbjct: 5 VPIVVEQTGRGERSYDIYSRLLKDRIILLSGPID 38
>gi|323703643|ref|ZP_08115286.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333922902|ref|YP_004496482.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323531415|gb|EGB21311.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum nigrificans DSM 574]
gi|333748463|gb|AEF93570.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 195
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD ++++V+AQ LFL++E +K IH+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S LLAAG KG R++LP +RIMI
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAKGKRYALPQARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ +++ +N HTG +EKI + T
Sbjct: 135 ---------TDIDIHAREILRMREILNERLSHHTGQPLEKIARDT 170
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPID 38
>gi|33592842|ref|NP_880486.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33596622|ref|NP_884265.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis 12822]
gi|33601237|ref|NP_888797.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|384204141|ref|YP_005589880.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|408415562|ref|YP_006626269.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|410420626|ref|YP_006901075.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|410472787|ref|YP_006896068.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|412337420|ref|YP_006966175.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|427815119|ref|ZP_18982183.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|427819401|ref|ZP_18986464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|427821908|ref|ZP_18988970.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
gi|67460369|sp|Q7VXI7.1|CLPP_BORPE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460372|sp|Q7W8X2.1|CLPP_BORPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|67460374|sp|Q7WK83.1|CLPP_BORBR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|33572490|emb|CAE42062.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis Tohama I]
gi|33573323|emb|CAE37306.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis]
gi|33575672|emb|CAE32750.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica RB50]
gi|332382255|gb|AEE67102.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis CS]
gi|401777732|emb|CCJ63063.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
pertussis 18323]
gi|408442897|emb|CCJ49464.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
parapertussis Bpp5]
gi|408447921|emb|CCJ59598.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica MO149]
gi|408767254|emb|CCJ52000.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 253]
gi|410566119|emb|CCN23679.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica 1289]
gi|410570401|emb|CCN18574.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica D445]
gi|410587173|emb|CCN02206.1| ATP-dependent Clp protease proteolytic subunit [Bordetella
bronchiseptica Bbr77]
Length = 217
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GP++D+ +++VVAQLLFL+SE+ K I Y
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFY 84
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV +G+ IYDTMQ++ P ++T C G A SM + LLAAG+KG R +LPNSRIMIH
Sbjct: 85 INSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIH 144
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 145 QPSGGAQ---------------------GQA----------------------------- 154
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQIQA EI++L++++N + ++TG +E+I T
Sbjct: 155 --------SDIQIQAREILDLRERLNRILAENTGQPVERIAVDT 190
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 25 IPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVN 58
>gi|115374393|ref|ZP_01461676.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
gi|310824399|ref|YP_003956757.1| ATP-dependent CLP protease proteolytic subunit 2 [Stigmatella
aurantiaca DW4/3-1]
gi|115368595|gb|EAU67547.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
gi|309397471|gb|ADO74930.1| ATP-dependent Clp protease proteolytic subunit 2 [Stigmatella
aurantiaca DW4/3-1]
Length = 200
Score = 197 bits (502), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE + RGERAYD+YSRLL++RII + PI+D +++VVVAQ+LFL+SE +K I++Y
Sbjct: 3 IPFVIETSHRGERAYDLYSRLLKDRIIMLGVPINDEVANVVVAQMLFLESEDPEKGINIY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM +LLL AG KG R++LPN+RIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGALLLLAGSKGKRYALPNARIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ LK +NG+ VKHTG +IE+I K T Y +
Sbjct: 133 --------TDIDIQAKEILRLKAYLNGIIVKHTGHTIERIEKDTERDYFM 174
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE + RGERAYD+YSRLL++RII + P++
Sbjct: 3 IPFVIETSHRGERAYDLYSRLLKDRIIMLGVPIN 36
>gi|402699101|ref|ZP_10847080.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas fragi
A22]
Length = 213
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGER+YDIYSRLL+ERII ++GP++D ++++V AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERSYDIYSRLLKERIIFLVGPVEDYMANLVAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAPGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+N++ ++N L HTG S+E I + T
Sbjct: 150 ---------SDIDIHAKEILNIRHRLNSLLAHHTGQSLETIERDT 185
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGER+YDIYSRLL+ERII ++GPV Y
Sbjct: 19 LVPMVVEQSARGERSYDIYSRLLKERIIFLVGPVEDY 55
>gi|423711327|ref|ZP_17685647.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
washoensis Sb944nv]
gi|395415241|gb|EJF81676.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
washoensis Sb944nv]
Length = 210
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LIPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG E I ++
Sbjct: 142 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQDYEVIERT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LIPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|423096202|ref|ZP_17083998.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens Q2-87]
gi|397886616|gb|EJL03099.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens Q2-87]
Length = 213
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++V AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLIGPVEDYMANLVAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAAGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG S+E I + T
Sbjct: 150 ---------SDIDIHAKEILHIRSRLNSLLAHHTGQSLETIERDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLIGPVEDY 55
>gi|383454037|ref|YP_005368026.1| ATP-dependent Clp protease proteolytic subunit [Corallococcus
coralloides DSM 2259]
gi|380732364|gb|AFE08366.1| ATP-dependent Clp protease proteolytic subunit [Corallococcus
coralloides DSM 2259]
Length = 206
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDIYSRLL++RI+ + IDD +++ +VAQLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANAIVAQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM ++LL AG KG R+SLP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKAPVSTICVGQAASMGAVLLLAGAKGKRYSLPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG + GQA
Sbjct: 126 QPLGGAR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA EI+ +K ++N L VKHTG +IE++ K T Y +
Sbjct: 136 --------TDIEIQAREILRMKAKLNELIVKHTGQTIERVEKDTDRDYFM 177
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VP VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVML 34
>gi|217979044|ref|YP_002363191.1| endopeptidase Clp [Methylocella silvestris BL2]
gi|217504420|gb|ACK51829.1| Endopeptidase Clp [Methylocella silvestris BL2]
Length = 215
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE T RGER +DIYSRLLRERII + GP++D ++SV++AQLLFL++E+ KK I M
Sbjct: 14 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGPVEDHMASVIIAQLLFLEAENPKKEISM 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P ++T CVGQA SM SLLL AGE G R +LPN+RIM+
Sbjct: 74 YINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGEAGQRFALPNARIMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGFQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI AE+I+ +K+++N +YVKHTG + I K+
Sbjct: 145 ---------SDILRHAEDIMKVKRRLNDIYVKHTGRDYDTIEKT 179
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 28/35 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIE T RGER +DIYSRLLRERII + GPV
Sbjct: 14 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGPVE 48
>gi|389877840|ref|YP_006371405.1| Protease subunit of ATP-dependent Clp proteases [Tistrella mobilis
KA081020-065]
gi|388528624|gb|AFK53821.1| Protease subunit of ATP-dependent Clp proteases [Tistrella mobilis
KA081020-065]
Length = 210
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GP++D++SS++ AQLLFL+SE+ KK I
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVEDNVSSLITAQLLFLESENPKKDISF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ + T C+GQA SM SLLLA G G R +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQYIRCDVQTLCIGQAASMGSLLLAGGAPGKRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ L+ ++N +YV+HTG +E++ ++
Sbjct: 143 ---------TDIEIHAREILKLRARLNEIYVQHTGRPLEEVERA 177
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGPVE 46
>gi|289523086|ref|ZP_06439940.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503629|gb|EFD24793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 194
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQTGRGERAYDIYSRLL++RII + I++ L+++VVAQ+LFL+SE K I++
Sbjct: 4 LVPIVIEQTGRGERAYDIYSRLLKDRIIFLGDVIEEHLANLVVAQMLFLESEDPDKDINL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY+ P++T CVGQA SMA++LLAAG KG R +LPNSR+M+
Sbjct: 64 YINSPGGSVTAGLGIYDTMQYIKCPVSTICVGQAASMAAVLLAAGAKGKRIALPNSRVML 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI ++ ++N + HT IEK+ K T
Sbjct: 135 ---------TDIEIHAKEIKKIRDRLNEIIAYHTNQDIEKVAKDT 170
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 28/28 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVPIVIEQTGRGERAYDIYSRLL++RII
Sbjct: 4 LVPIVIEQTGRGERAYDIYSRLLKDRII 31
>gi|444911057|ref|ZP_21231233.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
gi|444718395|gb|ELW59208.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
Length = 201
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE T RGERAYD+YSRLL++RI+ + P++D +++++VAQLLFL+SE K I +Y
Sbjct: 3 IPLVIETTHRGERAYDLYSRLLKDRIVMLGTPVNDDVANIIVAQLLFLESEDPDKGISLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T C+GQA SM +LLL AG G R++LPNSRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGALLLLAGSPGKRYALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI IQA+EI+ L+ INGL+VKHTG +IE+I K T Y +
Sbjct: 133 --------SDIDIQAKEILRLRSYINGLFVKHTGHNIERIEKDTERDYFM 174
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIE T RGERAYD+YSRLL++RI+ + PV+
Sbjct: 3 IPLVIETTHRGERAYDLYSRLLKDRIVMLGTPVN 36
>gi|372268542|ref|ZP_09504590.1| ATP-dependent Clp protease proteolytic subunit [Alteromonas sp.
S89]
Length = 214
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R++ PNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAEGKRYATPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 139 HQPSGGAQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ ++ ++N L HTG ++ +I + T
Sbjct: 150 ---------SDIHIHAQEILKIRARLNELMAHHTGRTVAEIERDT 185
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER++DIYSRLL+ER+I ++GPV
Sbjct: 19 LVPMVVEQTARGERSFDIYSRLLKERVIFLVGPVE 53
>gi|344923830|ref|ZP_08777291.1| protease subunit of ATP-dependent Clp protease [Candidatus
Odyssella thessalonicensis L13]
Length = 214
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL+ERII V G + D ++S++ AQ+LFL+SE+ K I +
Sbjct: 12 LVPIVVEQTNRGERSYDIYSRLLKERIIFVTGQVYDEMASLICAQILFLESENPNKDIVL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM+YV I T C+GQACSM SLLL AG KG R+SLPN+R+MI
Sbjct: 72 YINSPGGVVTAGLSIYDTMRYVKCDITTLCMGQACSMGSLLLTAGTKGKRYSLPNARVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGAQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A EI+ +++++N +YV HTG S+E+I ++
Sbjct: 143 ---------TDIEIHAREILKMRQRLNQMYVHHTGKSLEEIERA 177
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVPIV+EQT RGER+YDIYSRLL+ERII V G V
Sbjct: 12 LVPIVVEQTNRGERSYDIYSRLLKERIIFVTGQV 45
>gi|114327971|ref|YP_745128.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
[Granulibacter bethesdensis CGDNIH1]
gi|114316145|gb|ABI62205.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
[Granulibacter bethesdensis CGDNIH1]
Length = 248
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 136/226 (60%), Gaps = 58/226 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVP+V+EQT RGER++DIYSRLL+ERII + G + D +S+++ AQLLFL+SE+ +K
Sbjct: 44 SNTLVPMVVEQTARGERSFDIYSRLLKERIIFLTGAVYDQVSALICAQLLFLESENPQKE 103
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLL AGEK R +LPN+R
Sbjct: 104 ISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEKDKRFALPNAR 163
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+M+HQPSGG Q GQA
Sbjct: 164 VMVHQPSGGAQ---------------------GQA------------------------- 177
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+K++N +Y +HTG SIE I +
Sbjct: 178 ------------TDIEIQAREILTLRKRLNEIYNRHTGQSIEAIER 211
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGER++DIYSRLL+ERII + G V
Sbjct: 44 SNTLVPMVVEQTARGERSFDIYSRLLKERIIFLTGAV 80
>gi|389681563|ref|ZP_10172908.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
chlororaphis O6]
gi|399007987|ref|ZP_10710481.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM17]
gi|425900381|ref|ZP_18876972.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|388555099|gb|EIM18347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
chlororaphis O6]
gi|397889629|gb|EJL06111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|398119027|gb|EJM08743.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM17]
Length = 213
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++V AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLIGPVEDYMANLVAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAAGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG S+E I + T
Sbjct: 150 ---------SDIDIHAKEILHIRSRLNSLLAHHTGQSLETIERDT 185
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLIGPVEDY 55
>gi|225848210|ref|YP_002728373.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644423|gb|ACN99473.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 202
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 133/231 (57%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RII + PIDD +++++VAQLLFL++E +K I+M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPIDDHVANLIVAQLLFLEAEDPEKDIYM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G IYDTM Y+ P + T C+GQA SM + LL+AG KG R+SLPN+RIMI
Sbjct: 68 YINSPGGVVTAGFAIYDTMNYIKPDVVTICIGQAASMGAFLLSAGAKGKRYSLPNARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A EI+ LK+ +N KHTG IEKI T Y +
Sbjct: 139 ---------TDIEIHAREILRLKRMLNEYLAKHTGQPIEKIEADTERDYFM 180
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDIYSRLL++RII + P+
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLKDRIILLGTPID 42
>gi|359407410|ref|ZP_09199887.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR116
cluster alpha proteobacterium HIMB100]
gi|356677449|gb|EHI49793.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR116
cluster alpha proteobacterium HIMB100]
Length = 215
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S + LVP+VIEQTGRGER++DI+SRLL+ERII + GP++D ++S+V AQLLFL++E+
Sbjct: 9 SPPMDMNLVPMVIEQTGRGERSFDIFSRLLKERIIFLNGPVEDVMASLVCAQLLFLEAEN 68
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
K I MYINSPGG VTSGL IYDTMQY+ P +AT C+GQA SM SLLL AG G R+SL
Sbjct: 69 PSKDIFMYINSPGGVVTSGLAIYDTMQYIKPDVATVCMGQAASMGSLLLTAGAAGKRYSL 128
Query: 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 217
P++RIM HQPSGG Q GQA
Sbjct: 129 PHARIMTHQPSGGFQ---------------------GQA--------------------- 146
Query: 218 SRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+I A+EIINL+ ++N +Y H+G ++++I K
Sbjct: 147 ----------------TDIEIHAKEIINLRGRLNKIYETHSGKTVKQIEK 180
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S + LVP+VIEQTGRGER++DI+SRLL+ERII + GPV
Sbjct: 9 SPPMDMNLVPMVIEQTGRGERSFDIFSRLLKERIIFLNGPVE 50
>gi|307942062|ref|ZP_07657413.1| Clp protease [Roseibium sp. TrichSKD4]
gi|307774348|gb|EFO33558.1| Clp protease [Roseibium sp. TrichSKD4]
Length = 211
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLL+ERII + GPI+D ++++V AQLLFL++++ K I +
Sbjct: 12 LVPMVVEQTNRGERSFDIYSRLLKERIIFLTGPIEDHVATLVCAQLLFLEADNPSKEIAI 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLLA GEK MR SLPN+R+M+
Sbjct: 72 YINSPGGLVTSGLAIYDTMQFIRPAVSTLCIGQAASMGSLLLAGGEKDMRFSLPNARVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQAA--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI + A+EI+ +K+++N +YVKHTG S++++ ++
Sbjct: 144 ----------DIMLHAQEILAMKRRLNEIYVKHTGQSLDEVEEA 177
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER++DIYSRLL+ERII + GP+
Sbjct: 12 LVPMVVEQTNRGERSFDIYSRLLKERIIFLTGPIE 46
>gi|404496730|ref|YP_006720836.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
metallireducens GS-15]
gi|418065321|ref|ZP_12702695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens RCH3]
gi|90101408|sp|Q39UH2.1|CLPP_GEOMG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78194335|gb|ABB32102.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens GS-15]
gi|373562499|gb|EHP88710.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
metallireducens RCH3]
Length = 199
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 139/231 (60%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + GPIDD ++++V+AQLLFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P++T CVGQA SM +LLL+ GEKG R SL +SRIMI
Sbjct: 62 YINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLTHSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +KK++N + +++G ++EK+ T Y +
Sbjct: 133 ---------TDIHIHAQEILKMKKRLNEIIAENSGQALEKVEADTERDYFM 174
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + GP+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPID 36
>gi|331005198|ref|ZP_08328592.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC1989]
gi|330420980|gb|EGG95252.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC1989]
Length = 208
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G ++D ++++VVAQLLFL++E+ K IH+
Sbjct: 15 LVPMVVEQTARGERSYDIYSRLLKERVIFMVGQVEDHMANLVVAQLLFLEAENPDKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPN+R MI
Sbjct: 75 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLNAGAPGKRFCLPNARTMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 135 HQPSGGAQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQAEEI+ +++++N + KH+G ++I + T
Sbjct: 146 ---------TDISIQAEEILKIRQRLNEIMAKHSGRDFDEIARDT 181
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ER+I ++G V
Sbjct: 15 LVPMVVEQTARGERSYDIYSRLLKERVIFMVGQV 48
>gi|261855007|ref|YP_003262290.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
gi|261835476|gb|ACX95243.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Halothiobacillus neapolitanus c2]
Length = 210
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 140/236 (59%), Gaps = 62/236 (26%)
Query: 38 SATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFL 93
+A LS P LVP+V+EQT RGERAYDIYSRLL+ER++ V+GPI+D +++++VAQLLFL
Sbjct: 8 TAGLSSPELAALVPMVVEQTSRGERAYDIYSRLLKERVVFVVGPIEDHMANLIVAQLLFL 67
Query: 94 QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 153
+SE+ K IH+YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM S+LL+ GE G
Sbjct: 68 ESENPDKDIHLYINSPGGVVTAGMSIYDTMQFIKPHVSTLCIGQAASMGSILLSGGEPGK 127
Query: 154 RHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 213
R +LPNSR+MIHQP GG Q GQA
Sbjct: 128 RFALPNSRVMIHQPLGGFQ---------------------GQA----------------- 149
Query: 214 SLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I AEEII L+ +NG+ KH +E I + T
Sbjct: 150 --------------------SDIKIHAEEIIKLRHSLNGVLAKHCNQPMEVIERDT 185
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%), Gaps = 4/46 (8%)
Query: 374 SATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+A LS P LVP+V+EQT RGERAYDIYSRLL+ER++ V+GP+
Sbjct: 8 TAGLSSPELAALVPMVVEQTSRGERAYDIYSRLLKERVVFVVGPIE 53
>gi|449461681|ref|XP_004148570.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Cucumis sativus]
gi|449522109|ref|XP_004168070.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Cucumis sativus]
Length = 243
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 95/130 (73%), Positives = 108/130 (83%), Gaps = 2/130 (1%)
Query: 43 RP--LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
RP LVP+VIE T RGERAYDI+SRLL+ERIIC+ GPI D + VVVAQLLFL+SE+ K
Sbjct: 32 RPYSLVPMVIEHTSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPTK 91
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
PI MY+NSPGG+VT+GL IYDTMQY+ PI T C+GQA SMASLLLAAG KG R SLPN+
Sbjct: 92 PISMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMASLLLAAGAKGERRSLPNA 151
Query: 161 RIMIHQPSGG 170
IMIHQPSGG
Sbjct: 152 TIMIHQPSGG 161
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 34/39 (87%), Gaps = 2/39 (5%)
Query: 379 RP--LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
RP LVP+VIE T RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 32 RPYSLVPMVIEHTSRGERAYDIFSRLLKERIICINGPIS 70
>gi|341616021|ref|ZP_08702890.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium sp.
JLT1363]
Length = 228
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/142 (63%), Positives = 112/142 (78%), Gaps = 4/142 (2%)
Query: 35 FHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
F S P LVP+V+EQT RGER++DI+SRLLRERI+ + GP++D ++S+ VAQL
Sbjct: 3 FDESGYFRDPATGALVPVVVEQTSRGERSFDIFSRLLRERIVFITGPVEDGMASLAVAQL 62
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL+SE+ KPI MYINSPGG VT+G+ I+DTMQY+ P I+T CVGQA SM S LLAAGE
Sbjct: 63 LFLESENPSKPISMYINSPGGVVTAGMAIHDTMQYIRPRISTVCVGQAASMGSFLLAAGE 122
Query: 151 KGMRHSLPNSRIMIHQPSGGVQ 172
GMR +LPN+RIM+HQPSGG Q
Sbjct: 123 PGMRIALPNARIMVHQPSGGAQ 144
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 4/49 (8%)
Query: 371 FHHSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
F S P LVP+V+EQT RGER++DI+SRLLRERI+ + GPV
Sbjct: 3 FDESGYFRDPATGALVPVVVEQTSRGERSFDIFSRLLRERIVFITGPVE 51
>gi|144899460|emb|CAM76324.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Magnetospirillum gryphiswaldense MSR-1]
Length = 214
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G + D +S+++ AQLLFL+SE+ K I
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVYDEVSTLICAQLLFLESENPNKDIAF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL +YDTMQY+ P ++T C+GQA SM SLLL AG KG R SLPN+R+MI
Sbjct: 74 YINSPGGVVTSGLAMYDTMQYIRPSVSTVCLGQAASMGSLLLTAGAKGKRFSLPNARVMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQA EI+ L+ ++N +YV+HTG ++E I ++
Sbjct: 145 ---------TDIEIQAREILALRARLNNMYVQHTGQTLEVIERA 179
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G V
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQV 47
>gi|347758142|ref|YP_004865704.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Micavibrio
aeruginosavorus ARL-13]
gi|347590660|gb|AEP09702.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Micavibrio
aeruginosavorus ARL-13]
Length = 216
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ERII + G ++D S+++ AQLLFL+SE+ KK I
Sbjct: 15 LVPMVIEQTARGERSFDIYSRLLKERIIFLTGEVEDHGSALICAQLLFLESENPKKEISF 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL +YDTMQY+ P+AT C+GQA SM SLLL AGE G R SLPNSRIMI
Sbjct: 75 YINSPGGVVTSGLAMYDTMQYIKCPVATVCIGQAASMGSLLLTAGEAGKRFSLPNSRIMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 135 HQPSGGAR---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+I A EI+ L++++N +YVKHTG + +I
Sbjct: 146 ---------TDIEIHAREILRLRERLNQIYVKHTGRKLNEI 177
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ERII + G V
Sbjct: 15 LVPMVIEQTARGERSFDIYSRLLKERIIFLTGEVE 49
>gi|49475380|ref|YP_033421.1| ATP-dependent Clp protease proteolytic subunit [Bartonella henselae
str. Houston-1]
gi|67460276|sp|Q6G3Z3.1|CLPP_BARHE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|49238186|emb|CAF27396.1| ATP-dependent clp protease proteolytic subunit [Bartonella henselae
str. Houston-1]
Length = 210
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG + + I ++
Sbjct: 142 ---------SDIERHAQDIIKMKQRLNEIYVQHTGQNYDVIERT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|399018228|ref|ZP_10720412.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. CF444]
gi|398101864|gb|EJL92064.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Herbaspirillum sp. CF444]
Length = 208
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GP++D+ +++VVAQLLFL+SE+ K I +
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDATANLVVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGMAIFDTMQFIKPDVSTLCTGLAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG + ++IGK T
Sbjct: 148 ---------SDIEIQAREILYLRERLNVILAEKTGRTTDQIGKDT 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ERII ++GPV+
Sbjct: 17 MVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVN 51
>gi|383758647|ref|YP_005437632.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
gi|381379316|dbj|BAL96133.1| ATP-dependent Clp protease, protease subunit ClpP [Rubrivivax
gelatinosus IL144]
Length = 202
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLLRERI+ ++GP++D ++++V AQLLFL+SE+ K I +
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDIFL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S LL AG KG R +LPNSR+MI
Sbjct: 71 YINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA EII ++Q+N +Y + TG SIEKI
Sbjct: 142 ---------SDIEIQAREIIKTREQLNRIYAERTGQSIEKI 173
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLLRERI+ ++GPV+
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVN 45
>gi|343496564|ref|ZP_08734660.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
nigripulchritudo ATCC 27043]
gi|342821177|gb|EGU55971.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
nigripulchritudo ATCC 27043]
Length = 208
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDQMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQY+ P ++T C+GQACSM + LLA G +G RH LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQYIKPNVSTVCMGQACSMGAFLLAGGAEGKRHVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|91787906|ref|YP_548858.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. JS666]
gi|91697131|gb|ABE43960.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
sp. JS666]
Length = 218
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 27 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVG A SM + LL+AG KG R SLPNSR+MI
Sbjct: 87 YINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMI 146
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 147 HQPSGGAQ---------------------GQA---------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A +I+ + Q+N + +TG IEKI + T Y L
Sbjct: 158 ---------TDIEIHARDILKTRDQLNRILAANTGQPIEKIERDTERDYFL 199
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 27 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 61
>gi|330994049|ref|ZP_08317979.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
sp. SXCC-1]
gi|347760102|ref|YP_004867663.1| Clp protease proteolytic subunit [Gluconacetobacter xylinus NBRC
3288]
gi|329758995|gb|EGG75509.1| ATP-dependent Clp protease proteolytic subunit 1 [Gluconacetobacter
sp. SXCC-1]
gi|347579072|dbj|BAK83293.1| Clp protease proteolytic subunit [Gluconacetobacter xylinus NBRC
3288]
Length = 213
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 137/223 (61%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +++VV AQLL+L+S + K I
Sbjct: 16 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQLLYLESVNPTKEISF 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPNSR+M+
Sbjct: 76 YINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNSRVMV 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 136 HQPSGGAQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+IQA+EI+ ++K++N +Y +HTG ++E+I +
Sbjct: 147 ---------SDIEIQAQEILTIRKRLNEIYNEHTGRTLEEIER 180
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 16 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 49
>gi|254282219|ref|ZP_04957187.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR51-B]
gi|219678422|gb|EED34771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR51-B]
Length = 220
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I V+G I+D +++++VAQLLFL+SE+ K IH+
Sbjct: 24 LVPMVIEQTSRGERSFDIYSRLLKERVIFVVGGIEDHMANLIVAQLLFLESENPDKDIHI 83
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ+V P ++T C+GQA SM + LL+ G KG R+ LPN+R MI
Sbjct: 84 YINSPGGSVTAGLSIYDTMQFVKPDVSTMCIGQAASMGAFLLSGGAKGKRYILPNARTMI 143
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 144 HQPSGGAQ---------------------GQA---------------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA+EI+ L++++N L HTG ++E I + T
Sbjct: 155 ---------SDIEIQAKEILYLRERLNRLMADHTGQTLETIERDT 190
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I V+G +
Sbjct: 24 LVPMVIEQTSRGERSFDIYSRLLKERVIFVVGGIE 58
>gi|388512413|gb|AFK44268.1| unknown [Lotus japonicus]
Length = 243
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 136/238 (57%), Gaps = 58/238 (24%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
+A S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI D + VVVAQLLFL+SE+
Sbjct: 27 TANRSYGLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESEN 86
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
KPI+MY+NSPGG+VT+GL IYDTMQY+ PI T C+GQA SM SLLLAAG KG R SL
Sbjct: 87 PSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLAAGAKGQRRSL 146
Query: 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 217
PN+ IMIHQPSGG GQA +A
Sbjct: 147 PNASIMIHQPSGGYS---------------------GQAKDIA----------------- 168
Query: 218 SRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
I ++I+ + +N LY KHTG SIE I K+ Y +
Sbjct: 169 --------------------IHTKQIVRVWDLLNDLYAKHTGQSIELIQKNMDRDYFM 206
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 35/42 (83%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+A S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 27 TANRSYGLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIS 68
>gi|409083034|gb|EKM83391.1| hypothetical protein AGABI1DRAFT_110056 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 247
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/158 (62%), Positives = 120/158 (75%), Gaps = 13/158 (8%)
Query: 27 SLGHLAKTFH---------HSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIIC 73
+L + A++FH H ++P LVPIVIEQTGRGER+YDI+SRLLRER+I
Sbjct: 11 ALKNTARSFHPLANQSLTEHQDRWAKPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIM 70
Query: 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATW 133
+ GPI D+ +++VVAQLLFL++E S KPIH+YINSPGGSVT+GL IYDT+QYV PI T+
Sbjct: 71 LHGPIRDTDATLVVAQLLFLEAEDSSKPIHLYINSPGGSVTAGLAIYDTVQYVSSPIHTY 130
Query: 134 CVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
+G A SM SLLLAAGE G RH LPN+ IMIHQPSGG
Sbjct: 131 SIGIAASMGSLLLAAGENGKRHCLPNASIMIHQPSGGA 168
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 72/111 (64%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDT+QYV PI T+ +G A SM SLLLAAGE G RH LPN+ IM
Sbjct: 101 LYINSPGGSVTAGLAIYDTVQYVSSPIHTYSIGIAASMGSLLLAAGENGKRHCLPNASIM 160
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCF 272
IHQPSGG GQA+DI I A+EI+ +++ + +Y KH E + F
Sbjct: 161 IHQPSGGASGQASDIAIHAKEILRIRQVLTSIYQKHCAQPAESEAEGLARF 211
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 13/65 (20%)
Query: 363 SLGHLAKTFH---------HSATLSRP----LVPIVIEQTGRGERAYDIYSRLLRERIIC 409
+L + A++FH H ++P LVPIVIEQTGRGER+YDI+SRLLRER+I
Sbjct: 11 ALKNTARSFHPLANQSLTEHQDRWAKPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIM 70
Query: 410 VMGPV 414
+ GP+
Sbjct: 71 LHGPI 75
>gi|319405542|emb|CBI79161.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp. AR
15-3]
Length = 210
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG G R +LPN+RIM+
Sbjct: 71 YINSPGGMVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGAAGRRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG + E I K+
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQNYEVIEKT 176
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|332528101|ref|ZP_08404132.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
gi|332112672|gb|EGJ12465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rubrivivax
benzoatilyticus JA2]
Length = 202
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLLRERI+ ++GP++D ++++V AQLLFL+SE+ K I +
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVNDQVANLVCAQLLFLESENPDKDISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S LL AG KG R +LPNSR+MI
Sbjct: 71 YINSPGGSVSAGLSIFDTMNFIKPEVSTLCMGMAASMGSFLLMAGAKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA EII ++Q+N +Y + TG SIEKI
Sbjct: 142 ---------SDIEIQAREIIKTREQLNRIYAERTGQSIEKI 173
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLLRERI+ ++GPV+
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLRERIVFLVGPVN 45
>gi|84515416|ref|ZP_01002778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
vestfoldensis SKA53]
gi|84510699|gb|EAQ07154.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Loktanella
vestfoldensis SKA53]
Length = 198
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 130/221 (58%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +S +VVAQLL L+SE+ KK I M
Sbjct: 3 LVPMVVEQTARGERAYDIFSRLLKERIIFLNGPVHDGMSQLVVAQLLHLESENPKKEISM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AG GMR SLPNSR+M+
Sbjct: 63 YINSPGGVVTSGLSIYDTMQYIKPKVSTLVIGQAASMGSLLLTAGHPGMRFSLPNSRVMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGYQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++N +YVKHTG ++K+
Sbjct: 134 ---------TDIMIHAAETQKLKTRLNEIYVKHTGQPLKKV 165
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 3 LVPMVVEQTARGERAYDIFSRLLKERIIFLNGPV 36
>gi|408417896|ref|YP_006759310.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacula
toluolica Tol2]
gi|405105109|emb|CCK78606.1| ClpP: ATP-dependent Clp protease, proteolytic subunit
[Desulfobacula toluolica Tol2]
Length = 207
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/226 (45%), Positives = 130/226 (57%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+P+V+EQ+ RGERAYDIYSRLL++RII + IDD +++++VAQ LFL+SE +K I
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFIGSAIDDEIANLIVAQFLFLESEDPEKDIS 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
YINSPGG VT+G+ IYDTMQY+ P +AT C+GQA SM +LLL AG KG R +LPNSRIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTMQYIKPDVATVCIGQAASMGALLLTAGTKGKRFALPNSRIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPLGGTQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA EI+ +K +N + HTG IEK+ T
Sbjct: 134 ----------TDIKIQANEILRMKDILNEILSTHTGQDIEKVSADT 169
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 29/31 (93%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
PL+P+V+EQ+ RGERAYDIYSRLL++RII +
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFI 32
>gi|319898776|ref|YP_004158869.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
clarridgeiae 73]
gi|319402740|emb|CBI76287.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
clarridgeiae 73]
Length = 210
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG G R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++I+ +K+++N +YV+HTG S E I K+
Sbjct: 142 ---------SDIERHAQDIVKMKRRLNEIYVQHTGQSYEVIEKT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|119476204|ref|ZP_01616556.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2143]
gi|119450831|gb|EAW32065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2143]
Length = 206
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G ++D++++++VAQLLFL+SE+ K IH+
Sbjct: 11 LVPMVVEQTAKGERSYDIYSRLLKERVIFMVGQVEDNMANLIVAQLLFLESENPDKDIHL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LLA G KG R LPN+R MI
Sbjct: 71 YINSPGGSVTAGLSIYDTMQFIRPDVSTMCIGQAASMGAFLLAGGAKGKRFILPNARTMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA EI+ +++++N L +HTG +E I + T
Sbjct: 142 ---------TDIDIQAREILIIRERLNQLMAEHTGNDVETIRRDT 177
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G V
Sbjct: 11 LVPMVVEQTAKGERSYDIYSRLLKERVIFMVGQVE 45
>gi|405365022|ref|ZP_11026468.1| ATP-dependent Clp protease proteolytic subunit [Chondromyces
apiculatus DSM 436]
gi|397089587|gb|EJJ20496.1| ATP-dependent Clp protease proteolytic subunit [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 206
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDIYSRLL++RI+ + IDD +++V+VAQLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM ++LL AG KG R++LP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ +K ++N L VKHT SIE++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMKAKLNELIVKHTAQSIERVEKDTDRDYFM 177
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VP VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVML 34
>gi|66044992|ref|YP_234833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. syringae B728a]
gi|71733685|ref|YP_273935.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|237803596|ref|ZP_04591181.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|257483815|ref|ZP_05637856.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|289627504|ref|ZP_06460458.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aesculi str. NCPPB 3681]
gi|289649945|ref|ZP_06481288.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aesculi str. 2250]
gi|289679415|ref|ZP_06500305.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. syringae FF5]
gi|301384120|ref|ZP_07232538.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tomato Max13]
gi|302059517|ref|ZP_07251058.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tomato K40]
gi|302135032|ref|ZP_07261022.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|302187983|ref|ZP_07264656.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. syringae 642]
gi|410092110|ref|ZP_11288650.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
viridiflava UASWS0038]
gi|416015383|ref|ZP_11562996.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. B076]
gi|416028212|ref|ZP_11571268.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422406896|ref|ZP_16483913.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|422583545|ref|ZP_16658668.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|422591339|ref|ZP_16665984.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422595334|ref|ZP_16669622.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|422606345|ref|ZP_16678355.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. mori str. 301020]
gi|422617411|ref|ZP_16686114.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. japonica str. M301072]
gi|422630346|ref|ZP_16695544.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. pisi str. 1704B]
gi|422640406|ref|ZP_16703833.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae Cit 7]
gi|422645838|ref|ZP_16708973.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|422650231|ref|ZP_16713037.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|422660628|ref|ZP_16723036.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|422674865|ref|ZP_16734215.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aceris str. M302273]
gi|422683344|ref|ZP_16741605.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|440721402|ref|ZP_20901801.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP34876]
gi|440724449|ref|ZP_20904731.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP34881]
gi|440746734|ref|ZP_20926014.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP39023]
gi|38257468|sp|Q87YR6.2|CLPP_PSESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|81308384|sp|Q4ZVM7.1|CLPP_PSEU2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|110816461|sp|Q48KZ0.1|CLPP_PSE14 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|63255699|gb|AAY36795.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
syringae pv. syringae B728a]
gi|71554238|gb|AAZ33449.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298159270|gb|EFI00328.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320325361|gb|EFW81428.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. B076]
gi|320327654|gb|EFW83662.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330868375|gb|EGH03084.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330878772|gb|EGH12921.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330882125|gb|EGH16274.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330889997|gb|EGH22658.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. mori str. 301020]
gi|330897794|gb|EGH29213.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. japonica str. M301072]
gi|330939706|gb|EGH43001.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330952797|gb|EGH53057.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae Cit 7]
gi|330959387|gb|EGH59647.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. maculicola str. ES4326]
gi|330963320|gb|EGH63580.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|330972589|gb|EGH72655.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aceris str. M302273]
gi|330985639|gb|EGH83742.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331012679|gb|EGH92735.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. tabaci str. ATCC 11528]
gi|331019229|gb|EGH99285.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|331025578|gb|EGI05634.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|409760538|gb|EKN45671.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
viridiflava UASWS0038]
gi|440363823|gb|ELQ00982.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP34876]
gi|440370093|gb|ELQ07039.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP34881]
gi|440370994|gb|ELQ07859.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae BRIP39023]
Length = 213
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G +G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG S+E I + T
Sbjct: 150 ---------SDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 185
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDY 55
>gi|28870881|ref|NP_793500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213968834|ref|ZP_03396975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. tomato T1]
gi|424066809|ref|ZP_17804271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|424071462|ref|ZP_17808887.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|443644728|ref|ZP_21128578.1| ATP-dependent Clp protease, proteolytic subunit [Pseudomonas
syringae pv. syringae B64]
gi|28854130|gb|AAO57195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213926437|gb|EEB59991.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. tomato T1]
gi|407998842|gb|EKG39240.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. avellanae str. ISPaVe037]
gi|408001926|gb|EKG42201.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
syringae pv. avellanae str. ISPaVe013]
gi|443284745|gb|ELS43750.1| ATP-dependent Clp protease, proteolytic subunit [Pseudomonas
syringae pv. syringae B64]
Length = 216
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 22 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHL 81
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G +G RH LPNSR+MI
Sbjct: 82 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMI 141
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 142 HQPLGGFQ---------------------GQA---------------------------- 152
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG S+E I + T
Sbjct: 153 ---------SDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 188
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 22 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDY 58
>gi|83592885|ref|YP_426637.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
rubrum ATCC 11170]
gi|386349615|ref|YP_006047863.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
rubrum F11]
gi|124013826|sp|Q2RU45.1|CLPP_RHORT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|83575799|gb|ABC22350.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
rubrum ATCC 11170]
gi|346718051|gb|AEO48066.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodospirillum
rubrum F11]
Length = 216
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 148/261 (56%), Gaps = 59/261 (22%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G + D ++S++ AQLLFL+SE+ K I
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQVHDGVASLICAQLLFLESENPSKDISF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQY+ P++T C+GQA SM SLLL AGE G R++ PN+RIMI
Sbjct: 74 YINSPGGVVTSGMAIYDTMQYIRSPVSTVCIGQAASMGSLLLCAGEAGKRYATPNARIMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGFQ---------------------GQAA--------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS-TVCFYVLHDPYICFW 283
DI+IQA EI+ L++++N +YVKHTG +E I ++ Y+ + F
Sbjct: 146 ----------DIEIQAREILALRERLNRIYVKHTGQPLETIERAMDRDNYMTAEESRAFG 195
Query: 284 INGLYVKHTGLSIEKIGKSTN 304
+ ++ LS + KS++
Sbjct: 196 LTDSVIERRALSDDGDTKSSS 216
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGQV 47
>gi|163781838|ref|ZP_02176838.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159883058|gb|EDP76562.1| ATP-dependent Clp protease proteolytic subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 201
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
++ LVPIVIEQT RGERAYDIYSRLL++RI+ + PIDD +++++VAQLLFL+S+ K
Sbjct: 6 VTNQLVPIVIEQTPRGERAYDIYSRLLQDRIVLLGFPIDDHVANLIVAQLLFLESQDPDK 65
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I++YINSPGGSVT+G+ +YDTMQY+ P + T C+GQA SM ++LLAAG KG R++LP+S
Sbjct: 66 DIYLYINSPGGSVTAGMAVYDTMQYIKPDVVTICIGQAASMGAVLLAAGAKGKRYALPHS 125
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
RIMIHQP GG+Q GQA
Sbjct: 126 RIMIHQPLGGIQ---------------------GQA------------------------ 140
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I AEEI +K+ +N + KHTG +EKI K Y +
Sbjct: 141 -------------TDIIIHAEEIKRIKRMLNEILAKHTGQDLEKIEKDVERDYFM 182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 37/49 (75%), Gaps = 5/49 (10%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
++ LVPIVIEQT RGERAYDIYSRLL++RI+ ++G +PI AN
Sbjct: 6 VTNQLVPIVIEQTPRGERAYDIYSRLLQDRIV-LLG----FPIDDHVAN 49
>gi|386287807|ref|ZP_10064978.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium BDW918]
gi|385279317|gb|EIF43258.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium BDW918]
Length = 210
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I +G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 19 LVPMVVEQTARGERSYDIYSRLLKERVIFCVGQVEDHMANLIVAQLLFLESENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LL+ GEKG R LPN+R MI
Sbjct: 79 YINSPGGSVTAGLSIYDTMQFIRPNVSTMCIGQAASMGAFLLSGGEKGKRFILPNARTMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 139 HQPSGGAQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA EI+ +++++N L +HTG S E I K T
Sbjct: 150 ---------TDIDIQAREILIIRERLNHLMAQHTGQSYETIAKDT 185
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I +G V
Sbjct: 19 LVPMVVEQTARGERSYDIYSRLLKERVIFCVGQVE 53
>gi|149926126|ref|ZP_01914388.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
MED105]
gi|149824944|gb|EDM84156.1| ATP-dependent Clp protease proteolytic subunit [Limnobacter sp.
MED105]
Length = 215
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+VIEQ+GRGERAYDIYSRLL+ER+I ++GPI+D +++V+VAQ+LFL+SE+ K I +Y
Sbjct: 19 VPMVIEQSGRGERAYDIYSRLLKERVIFLVGPINDQMANVIVAQMLFLESENPDKDIALY 78
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV++G+ IYDTMQ++ P ++T C G A SM + LL++G KG R SLPNSRIMIH
Sbjct: 79 INSPGGSVSAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLSSGTKGKRFSLPNSRIMIH 138
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGVQ GQA
Sbjct: 139 QPLGGVQ---------------------GQA----------------------------- 148
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++NG+ +TG +IE+I + T
Sbjct: 149 --------SDIEIHAKEILYLREKLNGILADNTGKTIEEIARDT 184
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+VIEQ+GRGERAYDIYSRLL+ER+I ++GP++
Sbjct: 19 VPMVIEQSGRGERAYDIYSRLLKERVIFLVGPIN 52
>gi|114321437|ref|YP_743120.1| ATP-dependent Clp protease proteolytic subunit [Alkalilimnicola
ehrlichii MLHE-1]
gi|122311052|sp|Q0A6A7.1|CLPP_ALHEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114227831|gb|ABI57630.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Alkalilimnicola ehrlichii MLHE-1]
Length = 214
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K IH+
Sbjct: 18 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHI 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQA SM +LLL G KG R++LPNSR+MI
Sbjct: 78 YINSPGGAVTAGLAIYDTMQFIKPDVSTVCIGQAASMGALLLTGGTKGKRYALPNSRMMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 138 HQPLGGFQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD+ I A EI++++ ++N + HTG +E I + T
Sbjct: 149 ---------TDVDIHAREILDMRDRLNRIMAHHTGQDMETIARDT 184
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV
Sbjct: 18 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVE 52
>gi|222085564|ref|YP_002544094.1| ATP-dependent Clp protease proteolytic subunit [Agrobacterium
radiobacter K84]
gi|398378316|ref|ZP_10536480.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
AP16]
gi|221723012|gb|ACM26168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Agrobacterium
radiobacter K84]
gi|397725070|gb|EJK85526.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium sp.
AP16]
Length = 210
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P I+T C+GQA SM SLLLAAG+K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAISTLCIGQAASMGSLLLAAGDKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEIYVKHCGRTYEEVEQT 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|422023827|ref|ZP_16370329.1| ATP-dependent Clp protease proteolytic subunit [Providencia sneebia
DSM 19967]
gi|414091842|gb|EKT53523.1| ATP-dependent Clp protease proteolytic subunit [Providencia sneebia
DSM 19967]
Length = 206
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTEGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG SIE+I + T
Sbjct: 147 ---------TDIEIHAQEILKVKARMNELMAKHTGKSIEEINRDT 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|300114126|ref|YP_003760701.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
watsonii C-113]
gi|299540063|gb|ADJ28380.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
watsonii C-113]
Length = 203
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T CVGQA SM ++LLA G G RH LP+SR++I
Sbjct: 68 YINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAPGKRHCLPHSRLLI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A EI+ +++++N + KHTG IEKI T Y +
Sbjct: 139 ---------TDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFM 180
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GPV
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVE 42
>gi|114771109|ref|ZP_01448549.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
bacterium HTCC2255]
gi|114548391|gb|EAU51277.1| Protease subunit of ATP-dependent Clp protease [alpha
proteobacterium HTCC2255]
Length = 204
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 110/126 (87%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DI+SRLL+ERII V GP+ D +S+++VAQLLFL++E+ KK I M
Sbjct: 12 LVPMVVEQTSRGERSFDIFSRLLKERIIFVSGPVHDGMSTLIVAQLLFLEAENPKKDISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM SLLLAAGEKGMR +LPN+R+M+
Sbjct: 72 YINSPGGVVTAGMAIYDTMQYIRPKVSTLCVGQAASMGSLLLAAGEKGMRFALPNARVMV 131
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 132 HQPSGG 137
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER++DI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERSFDIFSRLLKERIIFVSGPV 45
>gi|78357263|ref|YP_388712.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
alaskensis G20]
gi|90101407|sp|Q30Z79.1|CLPP_DESDG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78219668|gb|ABB39017.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
alaskensis G20]
Length = 200
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE TGR ERAYDIYSRLL++RII + P+DD+++S++ AQLLFL+SE+ +K I++Y
Sbjct: 3 IPMVIESTGRAERAYDIYSRLLKDRIILLGTPVDDNVASLICAQLLFLESENPEKEIYLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P+AT C+GQA SM + LLAAG+ GMR +LPNSRIMIH
Sbjct: 63 INSPGGVVTAGLAIYDTMQYISAPVATLCMGQAASMGAFLLAAGQPGMRFALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPMGGAQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA EI+ LK ++N + +HTG +EKI + T Y +
Sbjct: 133 --------TDIDIQAREILRLKDRLNEILSRHTGQPLEKIVEHTDRDYFM 174
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIE TGR ERAYDIYSRLL++RII + PV
Sbjct: 3 IPMVIESTGRAERAYDIYSRLLKDRIILLGTPVD 36
>gi|292493106|ref|YP_003528545.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
halophilus Nc4]
gi|291581701|gb|ADE16158.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
halophilus Nc4]
Length = 203
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 139/231 (60%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL +YDTMQ++ P I+T C+GQA SM ++LLA G +G RH LP+SR++I
Sbjct: 68 YINSPGGSVTAGLSVYDTMQFIKPDISTLCIGQAASMGAVLLAGGTQGKRHCLPHSRLLI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQAA--------------------------- 139
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
DI I A EI+ +++++N + KHTG IEKI + T Y +
Sbjct: 140 ----------DIDIHAREIMLVRERLNHILAKHTGQPIEKIQRDTDRDYFM 180
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GPV
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVE 42
>gi|77165153|ref|YP_343678.1| endopeptidase Clp [Nitrosococcus oceani ATCC 19707]
gi|254434725|ref|ZP_05048233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
oceani AFC27]
gi|110816460|sp|Q3JAJ8.1|CLPP_NITOC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|76883467|gb|ABA58148.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosococcus
oceani ATCC 19707]
gi|207091058|gb|EDZ68329.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosococcus
oceani AFC27]
Length = 203
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 138/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVEDHMANLVVAQLLFLESENPDKDIHL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T CVGQA SM ++LLA G G RH LP+SR++I
Sbjct: 68 YINSPGGSVTAGLSIYDTMQFIKPDVSTLCVGQAASMGAVLLAGGAGGKRHCLPHSRLLI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A EI+ +++++N + KHTG IEKI T Y +
Sbjct: 139 ---------TDIDIHAREILLVRERLNHILAKHTGQPIEKIQHDTDRDYFM 180
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER++ ++GPV
Sbjct: 8 LVPMVVEQTARGERAYDIYSRLLKERVVFLVGPVE 42
>gi|302673690|ref|XP_003026531.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
gi|300100214|gb|EFI91628.1| hypothetical protein SCHCODRAFT_86223 [Schizophyllum commune H4-8]
Length = 245
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/127 (71%), Positives = 110/127 (86%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQTGRGER+YDI+SRLLRER++ + GPI D+ S+++V+QLLFL++E + KPIH+
Sbjct: 43 LVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPIRDTDSALIVSQLLFLEAEETSKPIHL 102
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQYV PI T+C+G A SM SLLLAAGEKG RH LPN+ IMI
Sbjct: 103 YINSPGGSVTAGLAIYDTMQYVSSPIHTYCIGCAASMGSLLLAAGEKGKRHCLPNASIMI 162
Query: 165 HQPSGGV 171
HQPSGG
Sbjct: 163 HQPSGGA 169
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 72/96 (75%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDTMQYV PI T+C+G A SM SLLLAAGEKG RH LPN+ IM
Sbjct: 102 LYINSPGGSVTAGLAIYDTMQYVSSPIHTYCIGCAASMGSLLLAAGEKGKRHCLPNASIM 161
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
IHQPSGG GQA+D+ I A+EI+ +++ + G+Y KH
Sbjct: 162 IHQPSGGASGQASDVAIHAKEILRVREALTGIYQKH 197
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 32/34 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+VIEQTGRGER+YDI+SRLLRER++ + GP+
Sbjct: 43 LVPMVIEQTGRGERSYDIFSRLLRERVVMLYGPI 76
>gi|357040211|ref|ZP_09102000.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
gibsoniae DSM 7213]
gi|355356875|gb|EHG04656.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
gibsoniae DSM 7213]
Length = 197
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL++RI+ + GPIDD++S++V+AQLLFL++E +K I++
Sbjct: 4 LVPIVVEQTNRGERSYDIYSRLLKDRIVFIGGPIDDTVSNLVIAQLLFLEAEDPEKDINI 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQYV P ++T C+GQA SM S LLAAG G R +LP +RIMI
Sbjct: 64 YINSPGGVVTAGMAIYDTMQYVKPDVSTICLGQAASMGSFLLAAGAPGKRFALPYARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ +K +N L KHTG +K+ + T
Sbjct: 135 ---------TDIDIHAKEILRMKDTLNDLLAKHTGQPRDKVARDT 170
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER+YDIYSRLL++RI+ + GP+
Sbjct: 4 LVPIVVEQTNRGERSYDIYSRLLKDRIVFIGGPID 38
>gi|254504144|ref|ZP_05116295.1| Clp protease [Labrenzia alexandrii DFL-11]
gi|222440215|gb|EEE46894.1| Clp protease [Labrenzia alexandrii DFL-11]
Length = 213
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GP++D ++++V AQLL+L++++ K I +
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVEDHMATLVSAQLLYLEADNPSKEIAI 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P ++T C+GQA SM SLLLAAGEK MR LPN+R+M+
Sbjct: 72 YINSPGGLVTSGLAIYDTMQFIRPSVSTLCIGQAASMGSLLLAAGEKDMRFILPNARVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQAA--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
DI + A+EI+ +K+++N +YVKHTG S++++ ++
Sbjct: 144 ----------DIMLHAQEILAMKRRLNEIYVKHTGRSLDQVEEA 177
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTNRGERAFDIYSRLLKERIIFLTGPVE 46
>gi|39996891|ref|NP_952842.1| ATP-dependent Clp protease proteolytic subunit [Geobacter
sulfurreducens PCA]
gi|409912312|ref|YP_006890777.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
gi|60389697|sp|Q74C82.1|CLPP_GEOSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|39983779|gb|AAR35169.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens PCA]
gi|298505904|gb|ADI84627.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Geobacter
sulfurreducens KN400]
Length = 199
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + GP+DD ++++V+AQ+LFL++E K IH+
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQY+ P++T CVGQA SM +LLL+ GEKG R SL +SRIMI
Sbjct: 62 YINSPGGVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRFSLKHSRIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ LKK++N + ++TG + K+ T Y +
Sbjct: 133 ---------TDIHIHAQEILKLKKRLNEILAENTGQQLAKVEADTERDYFM 174
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + GPV
Sbjct: 2 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVD 36
>gi|424865494|ref|ZP_18289359.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
gi|400758762|gb|EJP72964.1| ATP-dependent Clp protease, proteolytic subunit ClpP [SAR86 cluster
bacterium SAR86B]
Length = 204
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
+ L+P+VIEQT RGER++DIYSRLL+ER+I + GPIDD +S++VVAQLLFL+SE+ +
Sbjct: 3 NIQSALIPMVIEQTPRGERSFDIYSRLLKERVIFLTGPIDDHISNLVVAQLLFLESENPE 62
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K I +YINSPGGS+++GL IYDTMQ++ ++T C+GQA SM +LLLA G+KG R +LPN
Sbjct: 63 KDISIYINSPGGSISAGLAIYDTMQFISSSVSTMCIGQAASMGALLLAGGDKGKRFALPN 122
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
SR+MIHQP GG Q GQA
Sbjct: 123 SRVMIHQPLGGFQ---------------------GQA----------------------- 138
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+ +KK +N + KHTG +++KI K T
Sbjct: 139 --------------SDFEIHAKEILYMKKIVNEILAKHTGQTVKKIEKDT 174
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ L+P+VIEQT RGER++DIYSRLL+ER+I + GP+
Sbjct: 3 NIQSALIPMVIEQTPRGERSFDIYSRLLKERVIFLTGPID 42
>gi|398805269|ref|ZP_10564248.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. CF318]
gi|398092050|gb|EJL82472.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
sp. CF318]
Length = 218
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 27 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVG A SM + LL+AG KG R SLPNSR+MI
Sbjct: 87 YINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSAGAKGKRFSLPNSRVMI 146
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 147 HQPSGGAQ---------------------GQA---------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A +I+ + Q+N + +TG IEKI + T Y +
Sbjct: 158 ---------TDIEIHARDILKTRDQLNRILAANTGQPIEKIERDTERDYFM 199
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 27 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 61
>gi|398347022|ref|ZP_10531725.1| ATP-dependent Clp protease proteolytic subunit [Leptospira broomii
str. 5399]
Length = 198
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+VIEQTGRGER+YDIYSRLL++RII + I D ++VV+AQLLFL +E+ + I++
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAISDEYANVVIAQLLFLDAENPDRDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V+SGL IYDTMQY+ + T CVGQA SMA+LLLA G KG R +LP+SRIM+
Sbjct: 63 YINSPGGYVSSGLAIYDTMQYIKADVRTLCVGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP+GG GQA
Sbjct: 123 HQPTGG---------------------ATGQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+E++ LK+ +NGLY KHTG S+E+I K T
Sbjct: 134 ---------SDIAIQAKEVLKLKEVLNGLYTKHTGKSMEQIQKDT 169
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+VIEQTGRGER+YDIYSRLL++RII + +S
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAIS 37
>gi|171059225|ref|YP_001791574.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
gi|226706459|sp|B1Y6H3.1|CLPP_LEPCP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|170776670|gb|ACB34809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Leptothrix
cholodnii SP-6]
Length = 202
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+GRGERAYDIYSRLLRER+I ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 11 MVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQSANLVVAQLLFLESENPDKDISF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R SLPNS+IMI
Sbjct: 71 YINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 131 HQPLGGAQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A EI+ ++Q+N + + TG S+EKI T Y +
Sbjct: 142 ---------TDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFM 183
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 11 MVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVN 45
>gi|91775762|ref|YP_545518.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Methylobacillus flagellatus KT]
gi|116243149|sp|Q1H1G0.1|CLPP_METFK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|91709749|gb|ABE49677.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Methylobacillus flagellatus KT]
Length = 213
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGER+YDIYSRLL+ERII ++GP++D+ +++VVAQLLFL++E+ K I+ Y
Sbjct: 20 IPMVIEQSGRGERSYDIYSRLLKERIIFLVGPVNDATANLVVAQLLFLEAENPDKDIYFY 79
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+GIYDTMQ+V P ++T CVGQA SM +LLLAAG +G R LPNSR+MIH
Sbjct: 80 INSPGGSVTAGMGIYDTMQFVKPDVSTLCVGQAASMGALLLAAGAQGKRFCLPNSRVMIH 139
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 140 QPLGGFQ---------------------GQA----------------------------- 149
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++N + HTG +EKI T
Sbjct: 150 --------SDIEIHAKEILFLREKLNHILASHTGQPVEKIALDT 185
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGER+YDIYSRLL+ERII ++GPV+
Sbjct: 20 IPMVIEQSGRGERSYDIYSRLLKERIIFLVGPVN 53
>gi|374623544|ref|ZP_09696052.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ectothiorhodospira sp. PHS-1]
gi|373942653|gb|EHQ53198.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Ectothiorhodospira sp. PHS-1]
Length = 216
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I V+GP++D +++V+VAQLLFL+SE+ K I +
Sbjct: 20 LVPMVVEQTARGERAYDIYSRLLKERVIFVVGPVEDYMANVIVAQLLFLESENPDKDISL 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P ++T C+GQA SM ++LLA G G R+ LP+SR+MI
Sbjct: 80 YINSPGGVVTAGLAIYDTMQFIKPDVSTLCIGQAASMGAVLLAGGAAGKRYCLPHSRVMI 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 140 HQPLGGFQ---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ ++ Q+NG+ KHTG +E+I + T
Sbjct: 151 ---------TDIDIHAREILKVRDQLNGILSKHTGQPVERIEQDT 186
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I V+GPV Y
Sbjct: 20 LVPMVVEQTARGERAYDIYSRLLKERVIFVVGPVEDY 56
>gi|389690968|ref|ZP_10179861.1| protease subunit of ATP-dependent protease [Microvirga sp. WSM3557]
gi|388589211|gb|EIM29500.1| protease subunit of ATP-dependent protease [Microvirga sp. WSM3557]
Length = 210
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
A + LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL++E+
Sbjct: 6 ALFNNTLVPMVVEQSNRGERAFDIYSRLLRERIIFLTGPVEDYSASLIVAQLLFLEAENP 65
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
KK I YINSPGG VTSGL IYDTMQ++ P++T CVGQA SM SLLL AGEKGMR +LP
Sbjct: 66 KKEISFYINSPGGVVTSGLSIYDTMQFIRCPVSTLCVGQAASMGSLLLTAGEKGMRFALP 125
Query: 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218
N+RIM+HQPSGG Q GQ
Sbjct: 126 NARIMVHQPSGGYQ---------------------GQVTD-------------------- 144
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
IMIH A E LK+++N +YV HTG + E+I ++
Sbjct: 145 -IMIH----------------ARESEALKRRLNEIYVGHTGRNYEEIERA 177
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
A + LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV Y
Sbjct: 6 ALFNNTLVPMVVEQSNRGERAFDIYSRLLRERIIFLTGPVEDY 48
>gi|296116539|ref|ZP_06835149.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
hansenii ATCC 23769]
gi|295976751|gb|EFG83519.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
hansenii ATCC 23769]
Length = 211
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 136/227 (59%), Gaps = 58/227 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +S+VV AQLL+L+S + K
Sbjct: 10 FNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSAVVSAQLLYLESVNPTK 69
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPNS
Sbjct: 70 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNS 129
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 130 RVMVHQPSGGAQ---------------------GQA------------------------ 144
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+IQA EI+ ++K++N +Y HTG ++E+I +
Sbjct: 145 -------------SDIEIQATEILTIRKRLNEIYENHTGRTLEEIER 178
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 10 FNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 47
>gi|225850859|ref|YP_002731093.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
gi|225644930|gb|ACO03116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Persephonella
marina EX-H1]
Length = 202
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 138/235 (58%), Gaps = 60/235 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RII + PIDD ++++++AQLLFL+SE +K I+M
Sbjct: 12 LVPIVIEQTPRGERAYDIYSRLLKDRIIMLGFPIDDHIANLIIAQLLFLESEDPEKDIYM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM+Y+ P + T C+GQA SM + LL+AG KG R++LP+SRIMI
Sbjct: 72 YINSPGGVVTSGLAIYDTMRYIKPDVVTICMGQAASMGAFLLSAGAKGKRYALPSSRIMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV--CFYVLHD 277
TDI+I A+EI+ LKK +N +HTG +EKI + T F HD
Sbjct: 143 ---------TDIEIHAKEILRLKKYLNERLAEHTGQPLEKIERDTERDFFMSAHD 188
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 5/45 (11%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
LVPIVIEQT RGERAYDIYSRLL++RII ++G +PI AN
Sbjct: 12 LVPIVIEQTPRGERAYDIYSRLLKDRII-MLG----FPIDDHIAN 51
>gi|167521860|ref|XP_001745268.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776226|gb|EDQ89846.1| predicted protein [Monosiga brevicollis MX1]
Length = 209
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 130/218 (59%), Gaps = 58/218 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+E T GERA+DIYSRLLRERI+C+MGP+DD+++S +VAQLL L+SE+ +P+ +YIN
Sbjct: 1 MVVESTPVGERAFDIYSRLLRERIVCLMGPVDDAMASTIVAQLLHLESENPDEPVSVYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+GL IYDT+QY+ P I T C GQACSM SLLL AG G R++LPNSRIM+HQP
Sbjct: 61 SPGGSVTAGLAIYDTLQYIRPRITTVCSGQACSMGSLLLTAGSPGHRYALPNSRIMVHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG + GQA
Sbjct: 121 SGGAR---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI I AEEI+ LK IN LY HTG + ++I
Sbjct: 129 ------SDIAIHAEEILKLKTTINNLYAHHTGRTYDEI 160
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+E T GERA+DIYSRLLRERI+C+MGPV
Sbjct: 1 MVVESTPVGERAFDIYSRLLRERIVCLMGPVD 32
>gi|398867303|ref|ZP_10622767.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM78]
gi|398237281|gb|EJN23035.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM78]
Length = 211
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAKGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|255647414|gb|ACU24172.1| unknown [Glycine max]
Length = 238
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/148 (65%), Positives = 114/148 (77%), Gaps = 1/148 (0%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
F G L H KT S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI D
Sbjct: 8 FAGNLLFHGRKT-QTQCIRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDT 66
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+ VVVAQLLFL+SE+S KPI+MY+NSPGG+VT+GL IYDTMQY+ P+ T C+GQA SM
Sbjct: 67 AHVVVAQLLFLESENSSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICMGQAASMG 126
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGG 170
SLLLAAG KG R SLPN+ IMIHQPSGG
Sbjct: 127 SLLLAAGAKGERRSLPNATIMIHQPSGG 154
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
F G L H KT S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 8 FAGNLLFHGRKT-QTQCIRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIS 63
>gi|325922708|ref|ZP_08184448.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
gardneri ATCC 19865]
gi|325546825|gb|EGD17939.1| ATP-dependent Clp protease proteolytic subunit ClpP [Xanthomonas
gardneri ATCC 19865]
Length = 196
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 135/222 (60%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +YIN
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MIHQP
Sbjct: 61 SPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E IG+ T
Sbjct: 129 ------TDIDIHAREILTLRSRLNEILAKHTGQSLETIGRDT 164
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPID 32
>gi|440226208|ref|YP_007333299.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
tropici CIAT 899]
gi|440037719|gb|AGB70753.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
tropici CIAT 899]
Length = 210
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG+K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGDKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II +K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHARDIIKMKRRLNEVYVKHCGRTYEEVEQT 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|296284617|ref|ZP_06862615.1| ATP-dependent Clp protease proteolytic subunit [Citromicrobium
bathyomarinum JL354]
Length = 228
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/138 (65%), Positives = 113/138 (81%), Gaps = 2/138 (1%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F AT + LVP+V+EQT RGER++DI+SRLLRERI+ + GP++D ++S+ VAQLLFL+
Sbjct: 9 FRDPATGA--LVPVVVEQTSRGERSFDIFSRLLRERIVFLTGPVEDGMASLAVAQLLFLE 66
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SE+ KPI MYINSPGG VT+G+ I+DTMQY+ P I+T CVGQA SM S LLAAGE GMR
Sbjct: 67 SENPSKPISMYINSPGGVVTAGMAIHDTMQYIQPRISTVCVGQAASMGSFLLAAGEPGMR 126
Query: 155 HSLPNSRIMIHQPSGGVQ 172
+LPN+RIMIHQPSGG Q
Sbjct: 127 IALPNARIMIHQPSGGAQ 144
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%), Gaps = 2/44 (4%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F AT + LVP+V+EQT RGER++DI+SRLLRERI+ + GPV
Sbjct: 9 FRDPATGA--LVPVVVEQTSRGERSFDIFSRLLRERIVFLTGPV 50
>gi|402594371|gb|EJW88297.1| Clp protease [Wuchereria bancrofti]
Length = 191
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V++Q GR ER YDIYSRLL++RI+CVM I+D +++ ++AQLLFLQ ES+K I+MYI
Sbjct: 1 MVVDQDGRIERVYDIYSRLLKDRIVCVMTSINDQVAASIIAQLLFLQGESAKSTINMYIM 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
PGGSVT+GLGIYDTMQY+ P+ATWC+GQA SM SLLL+AG KGMR SLPN+RIM+HQP
Sbjct: 61 CPGGSVTAGLGIYDTMQYISAPVATWCIGQAASMGSLLLSAGAKGMRTSLPNARIMVHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG + GQA
Sbjct: 121 SGGAE---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI I+AEEI LK ++N +Y HTG +IE I ++
Sbjct: 129 ------SDILIRAEEIGRLKTRLNNIYAVHTGQNIEIIEEA 163
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 27/32 (84%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V++Q GR ER YDIYSRLL++RI+CVM ++
Sbjct: 1 MVVDQDGRIERVYDIYSRLLKDRIVCVMTSIN 32
>gi|387127882|ref|YP_006296487.1| ATP-dependent Clp protease proteolytic subunit [Methylophaga sp.
JAM1]
gi|386274944|gb|AFI84842.1| ATP-dependent Clp protease proteolytic subunit [Methylophaga sp.
JAM1]
Length = 211
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL+ERII ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 16 LVPIVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLIVAQMLFLESENPDKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ P ++T C+GQA SM +LLL AG K R +LPNSRIM+
Sbjct: 76 YINSPGGAVTAGLAIYDTMQFIKPQVSTLCIGQAASMGALLLTAGAKDKRFALPNSRIMV 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++NG+ HTG I KI + T
Sbjct: 147 ---------SDIDIHAKEILSIRDRLNGIMAHHTGQDINKIERDT 182
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER+YDIYSRLL+ERII ++G V
Sbjct: 16 LVPIVVEQTARGERSYDIYSRLLKERIIFLVGQVE 50
>gi|225423749|ref|XP_002277069.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Vitis vinifera]
Length = 241
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 135/237 (56%), Gaps = 58/237 (24%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
+T S L+P+VIE + RGERAYDI+SRLL+ERI+C+ GPI D + VVVAQLLFL+SE+
Sbjct: 24 STRSYALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENP 83
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
KPIHMY+NSPGG+V++GL IYDTMQY+ P+ T C+GQA SM SLLLAAG KG R +LP
Sbjct: 84 SKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALP 143
Query: 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218
N+ IMIHQPSGG GQA M
Sbjct: 144 NATIMIHQPSGGYS---------------------GQAKDMT------------------ 164
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
I ++II + +N LY KHTG S++ I K+ Y +
Sbjct: 165 -------------------IHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFM 202
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+T S L+P+VIE + RGERAYDI+SRLL+ERI+C+ GP+S
Sbjct: 24 STRSYALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIS 64
>gi|147797194|emb|CAN64666.1| hypothetical protein VITISV_024612 [Vitis vinifera]
Length = 221
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 135/237 (56%), Gaps = 58/237 (24%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
+T S L+P+VIE + RGERAYDI+SRLL+ERI+C+ GPI D + VVVAQLLFL+SE+
Sbjct: 4 STRSYALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENP 63
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
KPIHMY+NSPGG+V++GL IYDTMQY+ P+ T C+GQA SM SLLLAAG KG R +LP
Sbjct: 64 SKPIHMYLNSPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALP 123
Query: 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218
N+ IMIHQPSGG GQA M
Sbjct: 124 NATIMIHQPSGGYS---------------------GQAKDMT------------------ 144
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
I ++II + +N LY KHTG S++ I K+ Y +
Sbjct: 145 -------------------IHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFM 182
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+T S L+P+VIE + RGERAYDI+SRLL+ERI+C+ GP+S
Sbjct: 4 STRSYALIPMVIEHSSRGERAYDIFSRLLKERIVCINGPIS 44
>gi|218885218|ref|YP_002434539.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|226706450|sp|B8DNL4.1|CLPP_DESVM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|218756172|gb|ACL07071.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 201
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 133/230 (57%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE +GR ERAYDIYSRLL++RII + PIDD ++S++ AQLLFL+SE+ +K I++Y
Sbjct: 3 VPIVIETSGRSERAYDIYSRLLKDRIILLGTPIDDQVASLICAQLLFLESENPEKEIYLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQY+ P+AT C+GQA SM +LLLAAG GMRH+LPNSRIMIH
Sbjct: 63 INSPGGSVTAGMAIYDTMQYITSPVATLCLGQAASMGALLLAAGAPGMRHALPNSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG GQA
Sbjct: 123 QPSGGFH---------------------GQASD--------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
I I A E++ +K +N + +HTG +E++ T Y +
Sbjct: 135 ----------IDIHAREVLRMKANLNEIMARHTGQPVERVADDTERDYFM 174
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE +GR ERAYDIYSRLL++RII + P+
Sbjct: 3 VPIVIETSGRSERAYDIYSRLLKDRIILLGTPID 36
>gi|343503058|ref|ZP_08740893.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
ATCC 19109]
gi|418480506|ref|ZP_13049564.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
gi|342812728|gb|EGU47720.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
ATCC 19109]
gi|384571898|gb|EIF02426.1| ATP-dependent Clp protease proteolytic subunit [Vibrio tubiashii
NCIMB 1337 = ATCC 19106]
Length = 208
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDQMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQY+ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQYIKPNVSTVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|294627913|ref|ZP_06706492.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292597827|gb|EFF41985.1| ATP-dependent Clp protease proteolytic subunit [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 208
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYS LL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +
Sbjct: 10 LVPMVVEQTSRGERAYDIYSCLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISI 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MI
Sbjct: 70 YINSPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 130 HQPLGGFQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 141 ---------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 176
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYS LL+ER+I ++GP+
Sbjct: 10 LVPMVVEQTSRGERAYDIYSCLLKERLIFLVGPID 44
>gi|334129245|ref|ZP_08503050.1| ATP-dependent Clp protease proteolytic subunit [Methyloversatilis
universalis FAM5]
gi|333445471|gb|EGK73412.1| ATP-dependent Clp protease proteolytic subunit [Methyloversatilis
universalis FAM5]
Length = 206
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 137/232 (59%), Gaps = 58/232 (25%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S T+ +VP+VIEQ+GRGERAYDIYSRLLRER++ ++GP++D+ ++++VAQLLFL+SE+
Sbjct: 3 SETVGLGMVPMVIEQSGRGERAYDIYSRLLRERVVFLVGPVNDATANLIVAQLLFLESEN 62
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
K I YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LL+AG KG R L
Sbjct: 63 PDKDIFFYINSPGGSVTAGLSIYDTMQFIKPDVSTLCIGQAASMGAFLLSAGAKGKRACL 122
Query: 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 217
PNSR+MIHQP GG Q GQA
Sbjct: 123 PNSRVMIHQPMGGFQ---------------------GQA--------------------- 140
Query: 218 SRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ L+ ++N + HTG IE I + T
Sbjct: 141 ----------------SDIEIHAREILTLRAKLNTIMSHHTGQPIETIERDT 176
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 37/42 (88%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S T+ +VP+VIEQ+GRGERAYDIYSRLLRER++ ++GPV+
Sbjct: 3 SETVGLGMVPMVIEQSGRGERAYDIYSRLLRERVVFLVGPVN 44
>gi|372270957|ref|ZP_09507005.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Marinobacterium stanieri S30]
Length = 211
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++VAQLLFL++E+ K IH+
Sbjct: 17 LVPMVVEQSSRGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLEAENPDKDIHL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G KG R +LPN+R+MI
Sbjct: 77 YINSPGGSVTAGMAIYDTMQFIKPDVSTMCIGQAASMGAFLLAGGAKGKRFALPNARVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGYQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I +EI+++++++N L +HTG E + + T
Sbjct: 148 ---------TDIEIHTKEILSIREKLNRLLAEHTGQDFETVARDT 183
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV
Sbjct: 17 LVPMVVEQSSRGERAYDIYSRLLKERVIFLVGPVE 51
>gi|218678052|ref|ZP_03525949.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
894]
Length = 176
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 63 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 134 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 168
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVE 37
>gi|134094958|ref|YP_001100033.1| ATP-dependent Clp protease proteolytic subunit [Herminiimonas
arsenicoxydans]
gi|133738861|emb|CAL61908.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Herminiimonas arsenicoxydans]
Length = 209
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ER+I ++GP++D ++++VAQLLFL+SE+ K I +
Sbjct: 18 MVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFLESENPDKDISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTMQ++ P ++T C G A SM + LLAAGEKG R SLPNSRIMI
Sbjct: 78 YINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGKRFSLPNSRIMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 138 HQPLGGAQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + TG ++E+I + T
Sbjct: 149 ---------SDIEIQAREILYLRERLNQILADRTGKTLEEISRDT 184
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ER+I ++GPV+
Sbjct: 18 MVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVN 52
>gi|444912991|ref|ZP_21233148.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
gi|444716404|gb|ELW57255.1| ATP-dependent Clp protease proteolytic subunit [Cystobacter fuscus
DSM 2262]
Length = 205
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDIYSRLL++RI+ + IDD +++V+V+QLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVANVIVSQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P ++T CVGQA SM ++LL AG KG R++LP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKPNVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ ++ ++N L VKHTG IE++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMRAKLNELIVKHTGQPIERVEKDTDRDYFM 177
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VP VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 6 VPYVIEQTHRGERSYDIYSRLLKDRIVML 34
>gi|296446284|ref|ZP_06888230.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
gi|296256185|gb|EFH03266.1| Endopeptidase Clp [Methylosinus trichosporium OB3b]
Length = 211
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE T RGER +DIYSRLLRERII + G ++D ++SV++AQLLFL++E+ K+ I +
Sbjct: 12 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDHMASVIIAQLLFLEAENPKREIFL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P +AT C+GQA SM SLLL AGE G R +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQYIRPKVATLCIGQAASMGSLLLCAGEAGQRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA + +RH
Sbjct: 132 HQPSGGFQ---------------------GQASDI-----------LRH----------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
AE+I+ +KK++N +YV+HTG E I K+
Sbjct: 149 ---------------AEDIMKIKKRLNEIYVRHTGRDYETIEKT 177
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIE T RGER +DIYSRLLRERII + G V
Sbjct: 12 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVE 46
>gi|452750504|ref|ZP_21950251.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
gi|451961698|gb|EMD84107.1| ATP-dependent Clp protease proteolytic subunit [alpha
proteobacterium JLT2015]
Length = 212
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 135/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQ+ RGER++DIYSRLLRERI+ V GPI+D +++++ AQLL+L+SE+ KK I+M
Sbjct: 8 LVPIVIEQSNRGERSFDIYSRLLRERIVFVTGPIEDHMATLITAQLLYLESENPKKDIYM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTMQY+ P + T C+GQA SM S LL+AGE GMR +L N+RIMI
Sbjct: 68 YINSPGGVVTAGMAIHDTMQYIRPRVGTVCIGQAASMGSFLLSAGEPGMRVALTNARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 128 HQPSGGAQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI+IQA+EI+ ++ ++N L K+TG IE I
Sbjct: 139 ---------TDIEIQAKEILRIRHRMNELMAKYTGQDIEVI 170
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQ+ RGER++DIYSRLLRERI+ V GP+
Sbjct: 8 LVPIVIEQSNRGERSFDIYSRLLRERIVFVTGPIE 42
>gi|330446593|ref|ZP_08310245.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490784|dbj|GAA04742.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 207
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++NGL +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQRLNGLLAEHTGQPLEIIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|402486168|ref|ZP_10833000.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp. CCGE
510]
gi|401814824|gb|EJT07154.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp. CCGE
510]
Length = 209
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 50
>gi|319404099|emb|CBI77689.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
rochalimae ATCC BAA-1498]
gi|319407112|emb|CBI80749.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella sp.
1-1C]
Length = 210
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ KK I++
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPKKEINL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG G R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPSVSTLCMGQAASMGSLLLTAGATGRRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A++II +K+++N +YV+HTG S E I
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQSYEVI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|89073230|ref|ZP_01159760.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
SKA34]
gi|90579278|ref|ZP_01235088.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
angustum S14]
gi|89050940|gb|EAR56404.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
SKA34]
gi|90440111|gb|EAS65292.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
angustum S14]
Length = 207
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++NGL +HTG +E + + T
Sbjct: 147 ---------SDIQIHAQEILTIKQRLNGLLAEHTGQPLEVVERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|161501794|ref|YP_767292.2| ATP-dependent Clp protease proteolytic subunit [Rhizobium
leguminosarum bv. viciae 3841]
gi|424874764|ref|ZP_18298426.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|393170465|gb|EJC70512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 209
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 50
>gi|298529124|ref|ZP_07016527.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
gi|298510560|gb|EFI34463.1| Endopeptidase Clp [Desulfonatronospira thiodismutans ASO3-1]
Length = 202
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE TGRGERAYD+YSRLL++RII + PIDD +++++ AQLLFL+SES ++ I+ Y
Sbjct: 5 IPMVIESTGRGERAYDLYSRLLKDRIILLGTPIDDHVANLICAQLLFLESESQEREINFY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQY+ P+AT C+GQA SM +LLLAAG+ GMR++LP+SRI+IH
Sbjct: 65 INSPGGSVTAGLAIYDTMQYISAPVATLCLGQAASMGALLLAAGQSGMRYALPHSRILIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG + GQA
Sbjct: 125 QPMGGFK---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLH 276
TDI IQA+EII LK ++N + HT + + KI T Y L
Sbjct: 135 --------TDIDIQAKEIIRLKSKLNNILAHHTKVDLAKIEHDTDRDYYLE 177
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIE TGRGERAYD+YSRLL++RII + P+
Sbjct: 5 IPMVIESTGRGERAYDLYSRLLKDRIILLGTPID 38
>gi|78485521|ref|YP_391446.1| ATP-dependent Clp protease proteolytic subunit [Thiomicrospira
crunogena XCL-2]
gi|110816468|sp|Q31GF1.1|CLPP_THICR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|78363807|gb|ABB41772.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thiomicrospira
crunogena XCL-2]
Length = 200
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 139/233 (59%), Gaps = 58/233 (24%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
HS + LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQLLFL+SE
Sbjct: 2 HSTPIQDALVPMVIEQTSRGERSFDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESE 61
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ K IH+YINSPGGSVT+G+ IYDTM+++ P ++T C+GQA SM S LL+AG +G R++
Sbjct: 62 NPDKDIHLYINSPGGSVTAGMAIYDTMRFIKPDVSTMCIGQAASMGSFLLSAGAEGKRYA 121
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPNSR+MIHQP GG Q GQA
Sbjct: 122 LPNSRVMIHQPLGGFQ---------------------GQA-------------------- 140
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EII +K+++N HTG IE I T
Sbjct: 141 -----------------SDIEIHAKEIIQIKQKLNKALADHTGQPIEVIENDT 176
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
HS + LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 2 HSTPIQDALVPMVIEQTSRGERSFDIYSRLLKERVIFLVGQVE 44
>gi|116243118|sp|Q1MIM7.1|CLPP2_RHIL3 RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|115256102|emb|CAK07183.1| putative ATP-dependent Clp protease proteolytic subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 201
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 63 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 134 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 168
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 42
>gi|418055593|ref|ZP_12693647.1| ATP-dependent Clp protease proteolytic subunit [Hyphomicrobium
denitrificans 1NES1]
gi|353209871|gb|EHB75273.1| ATP-dependent Clp protease proteolytic subunit [Hyphomicrobium
denitrificans 1NES1]
Length = 217
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 135/229 (58%), Gaps = 58/229 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
T++ P+V+EQT RGER YD+ SRLL+ERII V GP++D +++ + QLLFL+SE+ K
Sbjct: 7 TVTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVEDHMAASICMQLLFLESENPK 66
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K I MYINSPGG VT+G+ IYDTMQ+V PP+AT C+GQA SM SLLL AGEKGMR +LPN
Sbjct: 67 KEISMYINSPGGVVTAGMAIYDTMQFVKPPVATLCIGQAASMGSLLLCAGEKGMRFALPN 126
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
+RIM+HQPSGG GQA + RH
Sbjct: 127 ARIMVHQPSGGFS---------------------GQASDIE-----------RH------ 148
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
AE+II +K+++N YVKHTG S E I K+
Sbjct: 149 --------------------AEDIIKMKRRLNETYVKHTGQSYEVIEKT 177
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
T++ P+V+EQT RGER YD+ SRLL+ERII V GPV
Sbjct: 7 TVTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVE 46
>gi|241204073|ref|YP_002975169.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857963|gb|ACS55630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 209
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGTVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGTVEDHMAT 50
>gi|395766799|ref|ZP_10447337.1| ATP-dependent Clp protease proteolytic subunit [Bartonella doshiae
NCTC 12862]
gi|395415411|gb|EJF81845.1| ATP-dependent Clp protease proteolytic subunit [Bartonella doshiae
NCTC 12862]
Length = 210
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRSPVSTLCMGQAASMGSLLLTAGAKGHRFTLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A++II +K+++N +YV+HTG + I K+
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQDYDIIEKT 176
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVIEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|242309637|ref|ZP_04808792.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
pullorum MIT 98-5489]
gi|239523638|gb|EEQ63504.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
pullorum MIT 98-5489]
Length = 196
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE+TGRGER+YDIYSRLL++RII + G IDD ++S +VAQLLFL++E +K I++Y
Sbjct: 5 VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGIASSIVAQLLFLEAEDPQKDIYLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSGL IYDTM Y+ P I T C+GQA SM + LL+ G KG R+SLPNSRIMIH
Sbjct: 65 INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ LK +N + +T S+EKI K T
Sbjct: 135 --------TDIEIQAKEILRLKATLNEILAANTNQSLEKISKDT 170
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE+TGRGER+YDIYSRLL++RII + G +
Sbjct: 5 VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQID 38
>gi|387131588|ref|YP_006294478.1| ATP-dependent Clp protease proteolytic subunit [Methylophaga sp.
JAM7]
gi|386272877|gb|AFJ03791.1| ATP-dependent Clp protease proteolytic subunit [Methylophaga sp.
JAM7]
Length = 211
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 140/233 (60%), Gaps = 58/233 (24%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
+ ++S LVPIV+EQT RGER+YDIYSRLL+ER+I ++G ++D +++++VAQLLFL+SE
Sbjct: 8 ETQSVSNALVPIVVEQTSRGERSYDIYSRLLKERVIFLVGQVEDHMANLIVAQLLFLESE 67
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ K IH+YINSPGG+VT+GL IYDTMQ++ P ++T C+GQA SM +LLL AG G R +
Sbjct: 68 NPDKDIHLYINSPGGAVTAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAAGKRFA 127
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
LPNSR+M+HQP GG Q GQA
Sbjct: 128 LPNSRMMVHQPLGGFQ---------------------GQA-------------------- 146
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N + HTG IE+I K T
Sbjct: 147 -----------------SDIDIHAKEILSIRDRLNRIMSHHTGQKIEQIEKDT 182
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ ++S LVPIV+EQT RGER+YDIYSRLL+ER+I ++G V
Sbjct: 8 ETQSVSNALVPIVVEQTSRGERSYDIYSRLLKERVIFLVGQV 49
>gi|58700085|ref|ZP_00374620.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
gi|58533399|gb|EAL57863.1| Clp protease [Wolbachia endosymbiont of Drosophila ananassae]
Length = 142
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/126 (73%), Positives = 110/126 (87%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGERAYDIYSRL++ERII V GPI+D+++SV+VAQLLFL+SE+ K I M
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPIEDNMASVIVAQLLFLESENPDKDICM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLLAAG KG R+SLP+SRIMI
Sbjct: 63 YINSPGGVVTAGLSIYDTMQYINPDVSTLCIGQAASMGSLLLAAGTKGKRYSLPHSRIMI 122
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 123 HQPSGG 128
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L+PIV+EQT RGERAYDIYSRL++ERII V GP+
Sbjct: 3 LIPIVVEQTSRGERAYDIYSRLVKERIIFVTGPI 36
>gi|18203597|sp|Q9X5N0.1|CLPP2_MYXXA RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|4838463|gb|AAD31002.1|AF127082_1 ATP-dependent protease proteolytic subunit ClpP [Myxococcus xanthus
DZF1]
Length = 206
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 139/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIEQT RGER+YDI SRLL++RI+ + IDD +++V+VAQLLFL+SE K I++Y
Sbjct: 6 VPYVIEQTHRGERSYDIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T CVGQA SM ++LL AG KG R++LP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ +K ++N L VKHTG SIE++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMKAKLNELIVKHTGQSIERVEKDTDRDYFM 177
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERII 408
VP VIEQT RGER+YDI SRLL++RI+
Sbjct: 6 VPYVIEQTHRGERSYDIISRLLKDRIV 32
>gi|386392769|ref|ZP_10077550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. U5L]
gi|385733647|gb|EIG53845.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. U5L]
Length = 204
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 136/233 (58%), Gaps = 58/233 (24%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
P +PIVIE TGR ERAYDIYSRLLR+RII + +DD +++++ AQLLFL+SE +K I
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIF 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
MYINSPGGSVT+GL IYDTMQYVLP ++T C+GQA SM +LLL AG GMR++LP+SRIM
Sbjct: 62 MYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPMGGFQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLH 276
TDI I A EI+ +++ +N + V+HTG +EK+ T Y ++
Sbjct: 134 ----------TDIDIHAREILRIRESLNEIMVRHTGQDLEKVRVDTDRDYFMN 176
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERII 408
P +PIVIE TGR ERAYDIYSRLLR+RII
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRII 30
>gi|218514228|ref|ZP_03511068.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
8C-3]
Length = 201
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 63 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 134 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 168
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 42
>gi|261346364|ref|ZP_05974008.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
rustigianii DSM 4541]
gi|282565678|gb|EFB71213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
rustigianii DSM 4541]
Length = 206
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L HTG SIE+I + T
Sbjct: 147 ---------TDIEIHAQEILKVKSRMNELMAHHTGKSIEEISRDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|183601061|ref|ZP_02962554.1| hypothetical protein PROSTU_04684 [Providencia stuartii ATCC 25827]
gi|386742738|ref|YP_006215917.1| ATP-dependent Clp protease proteolytic subunit [Providencia
stuartii MRSN 2154]
gi|188019401|gb|EDU57441.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Providencia stuartii ATCC 25827]
gi|384479431|gb|AFH93226.1| ATP-dependent Clp protease proteolytic subunit [Providencia
stuartii MRSN 2154]
Length = 206
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI A+EI+ +K ++N L HTG S+E+I + T
Sbjct: 147 ---------TDIQIHAQEILKVKTRMNELMALHTGKSVEEINRDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|304391391|ref|ZP_07373333.1| Clp protease [Ahrensia sp. R2A130]
gi|303295620|gb|EFL89978.1| Clp protease [Ahrensia sp. R2A130]
Length = 212
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GPI+D +S +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIEDGMSVLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ PP+AT C+GQACSM SLLL AGEK MR LP +R+M+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPPVATLCMGQACSMGSLLLTAGEKDMRFILPQARVML 130
Query: 165 HQPSGGVQ 172
HQPSGG+Q
Sbjct: 131 HQPSGGMQ 138
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFITGPIE 45
>gi|408373741|ref|ZP_11171435.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
hongdengensis A-11-3]
gi|407766445|gb|EKF74888.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
hongdengensis A-11-3]
Length = 218
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 26 LVPVVIEQTSRGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDIHL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ +YDTMQ+V P ++T CVGQA SM + LLAAG G R +LPN+R+MI
Sbjct: 86 YINSPGGSVTAGMSVYDTMQFVKPDVSTMCVGQAASMGAFLLAAGAHGKRFALPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 146 HQPLGGFQ---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K Q+N L HTG +E++ K T
Sbjct: 157 ---------SDIEIHAKEILKIKGQLNNLLAHHTGQPLERLEKDT 192
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 26 LVPVVIEQTSRGERSFDIYSRLLKERVIFMIGQVE 60
>gi|218672748|ref|ZP_03522417.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
GR56]
Length = 203
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 63 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 134 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 168
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 42
>gi|242279532|ref|YP_002991661.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
salexigens DSM 2638]
gi|242122426|gb|ACS80122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
salexigens DSM 2638]
Length = 202
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+PIV+E TGR ERAYDIYSRLL++RII + G ++D ++SV+ AQLLFL+SE +K I+MY
Sbjct: 5 IPIVVETTGRTERAYDIYSRLLKDRIILLSGEVNDHVASVICAQLLFLESEDPEKEIYMY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ IYDTMQY+ P+AT C+GQA SM + LL+AGEKG R+SLP+SRI+IH
Sbjct: 65 INSPGGVVTAGMAIYDTMQYISAPVATLCMGQAASMGAFLLSAGEKGQRYSLPHSRILIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA EI+ L+K +N + ++TG ++E+I K T
Sbjct: 135 --------TDIDIQAREILRLRKSLNSIMAENTGRTVEEIEKDT 170
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+PIV+E TGR ERAYDIYSRLL++RII + G V+
Sbjct: 5 IPIVVETTGRTERAYDIYSRLLKDRIILLSGEVN 38
>gi|126732556|ref|ZP_01748354.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
E-37]
gi|126707002|gb|EBA06070.1| Protease subunit of ATP-dependent Clp protease [Sagittula stellata
E-37]
Length = 197
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 129/218 (59%), Gaps = 58/218 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDI+SRLL+ERI+ + GP+ D +SS+VVAQLL L++E+ K I MYIN
Sbjct: 1 MVVEQTSRGERAYDIFSRLLKERIVFLNGPVHDGMSSLVVAQLLHLEAENPSKEISMYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLL AG GMR SLPNSRIM+HQP
Sbjct: 61 SPGGVVTSGLSIYDTMQYIKPKVSTLVVGQAASMGSLLLTAGAAGMRFSLPNSRIMVHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG Q GQA
Sbjct: 121 SGGYQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I AEE I LK+++N +YV+HTG + E +
Sbjct: 129 ------TDIMIHAEETIKLKRRLNEIYVRHTGQTYEAV 160
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 28/31 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+V+EQT RGERAYDI+SRLL+ERI+ + GPV
Sbjct: 1 MVVEQTSRGERAYDIFSRLLKERIVFLNGPV 31
>gi|300721991|ref|YP_003711271.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Xenorhabdus nematophila ATCC 19061]
gi|297628488|emb|CBJ89055.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Xenorhabdus nematophila ATCC 19061]
Length = 207
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL++RII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVVEQTARGERAFDIYSRLLKDRIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG +G R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAEGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI A+EI+ +K ++N L KHTG ++KI + T
Sbjct: 147 ---------TDIQIHAQEILKVKARMNELMAKHTGQPLDKIEEDT 182
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL++RII + G V
Sbjct: 16 LVPMVVEQTARGERAFDIYSRLLKDRIIFLTGQVE 50
>gi|86357224|ref|YP_469116.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CFN
42]
gi|190891272|ref|YP_001977814.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli CIAT
652]
gi|209548850|ref|YP_002280767.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|417110576|ref|ZP_11963746.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
CNPAF512]
gi|421587070|ref|ZP_16032523.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp. Pop5]
gi|424890863|ref|ZP_18314462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|424894551|ref|ZP_18318125.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|424914596|ref|ZP_18337960.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|116243117|sp|Q2K9U7.1|CLPP2_RHIEC RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|86281326|gb|ABC90389.1| endopeptidase Clp, subunit 2 protein [Rhizobium etli CFN 42]
gi|190696551|gb|ACE90636.1| endopeptidase Clp protein, subunit 2 [Rhizobium etli CIAT 652]
gi|209534606|gb|ACI54541.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|327188463|gb|EGE55677.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium etli
CNPAF512]
gi|392850772|gb|EJB03293.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|393173081|gb|EJC73126.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393178778|gb|EJC78817.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|403708548|gb|EJZ23214.1| ATP-dependent Clp protease proteolytic subunit [Rhizobium sp. Pop5]
Length = 209
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 50
>gi|407781586|ref|ZP_11128804.1| protease subunit of ATP-dependent Clp protease [Oceanibaculum
indicum P24]
gi|407207803|gb|EKE77734.1| protease subunit of ATP-dependent Clp protease [Oceanibaculum
indicum P24]
Length = 214
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + G + D +SS++ AQLLFL+SE+ K I +
Sbjct: 15 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGQVHDGVSSLICAQLLFLESENPTKDIAL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL +YDTMQY+ P ++T C+GQA SM SLLL AG KG R LP+SR+M+
Sbjct: 75 YINSPGGVVTSGLAMYDTMQYIRPDVSTLCIGQAASMGSLLLTAGAKGKRFCLPHSRVMV 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 135 HQPSGGAQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+IQA EI++++ ++N +Y HTG IE+I K+
Sbjct: 146 ---------TDIEIQAREILSIRARLNRIYADHTGQPIEEIEKT 180
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDIYSRLL+ERII + G V
Sbjct: 15 LVPMVVEQTNRGERAYDIYSRLLKERIIFLTGQV 48
>gi|269102129|ref|ZP_06154826.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268162027|gb|EEZ40523.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 207
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|121534156|ref|ZP_01665981.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
gi|121307259|gb|EAX48176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermosinus
carboxydivorans Nor1]
Length = 203
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIV+EQ+ RGERAYDIYSRLL++RI+ + GPIDD ++++V+AQLLFL+SE K IH+
Sbjct: 3 FVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPIDDHVANLVIAQLLFLESEDPDKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+G A SMA++LLAAG G R++LP +R+MI
Sbjct: 63 YINSPGGVVTAGLAIYDTMQYIKPDVSTICLGSAASMAAVLLAAGAPGKRYALPYARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDIQIQA EI+ L++ +N + +HTG +E+I T Y +
Sbjct: 134 ---------TDIQIQAREILRLREILNDILARHTGKPLERIQHDTERDYFM 175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+ RGERAYDIYSRLL++RI+ + GP+
Sbjct: 3 FVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPID 37
>gi|357633385|ref|ZP_09131263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
gi|357581939|gb|EHJ47272.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
sp. FW1012B]
Length = 204
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 135/233 (57%), Gaps = 58/233 (24%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
P +PIVIE TGR ERAYDIYSRLLR+RII + +DD +++++ AQLLFL+SE +K I
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRIILLGSAVDDHVANLICAQLLFLESEDPEKEIF 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
MYINSPGGSVT+GL IYDTMQYVLP ++T C+GQA SM +LLL AG GMR++LP+SRIM
Sbjct: 62 MYINSPGGSVTAGLAIYDTMQYVLPKVSTLCMGQAASMGALLLCAGATGMRYALPHSRIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPMGGFQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLH 276
TDI I A EI+ +++ +N + +HTG IEK+ T Y ++
Sbjct: 134 ----------TDIDIHAREILRIRESLNEIMARHTGQDIEKVRVDTDRDYFMN 176
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERII 408
P +PIVIE TGR ERAYDIYSRLLR+RII
Sbjct: 2 PTIPIVIETTGRSERAYDIYSRLLRDRII 30
>gi|444375828|ref|ZP_21175080.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
gi|443680056|gb|ELT86704.1| ATP-dependent Clp protease proteolytic subunit [Enterovibrio sp.
AK16]
Length = 207
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQY+ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNTLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|170751514|ref|YP_001757774.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
radiotolerans JCM 2831]
gi|226706463|sp|B1LW28.1|CLPP_METRJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|170658036|gb|ACB27091.1| Endopeptidase Clp [Methylobacterium radiotolerans JCM 2831]
Length = 208
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 131/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL++E+ KK I
Sbjct: 12 LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYGASLIVAQLLFLEAENPKKEISF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P+ T CVGQA SM SLLL AGE G R +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLTAGEPGHRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A EI LK+++N +YVKHTG + I
Sbjct: 143 ---------TDILIHAREIEALKRRLNEIYVKHTGRDYDTI 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV Y
Sbjct: 12 LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDY 48
>gi|424881043|ref|ZP_18304675.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WU95]
gi|392517406|gb|EIW42138.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhizobium
leguminosarum bv. trifolii WU95]
Length = 209
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LIPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHTGRTYEEVEKT 176
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
L+P+V+EQT RGER+YDIYSRLL+ERII + G V + T
Sbjct: 11 LIPMVVEQTNRGERSYDIYSRLLKERIIFLTGAVEDHMAT 50
>gi|82703457|ref|YP_413023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrosospira
multiformis ATCC 25196]
gi|110816459|sp|Q2Y6J0.1|CLPP_NITMU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|82411522|gb|ABB75631.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosospira
multiformis ATCC 25196]
Length = 213
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE +GRGERAYDIYSRLLRER+I ++GP+ ++ ++++VAQLLFL+SE++ K IH
Sbjct: 18 LIPMVIETSGRGERAYDIYSRLLRERVIFLVGPVTEASANLIVAQLLFLESENADKDIHF 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++G+ +YDTMQ++ P ++T C+GQA SM SLLLAAG KG R LPNSR+MI
Sbjct: 78 YINSPGGLVSAGMAVYDTMQFIKPDVSTLCIGQAASMGSLLLAAGAKGKRFCLPNSRVMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 138 HQPLGGFQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ LK ++N L KHTG S+E I + T
Sbjct: 149 ---------SDIEIHAREILYLKNRLNELLSKHTGQSMETIERDT 184
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE +GRGERAYDIYSRLLRER+I ++GPV+
Sbjct: 18 LIPMVIETSGRGERAYDIYSRLLRERVIFLVGPVT 52
>gi|374705740|ref|ZP_09712610.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp. S9]
Length = 213
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++V AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLIGPVEDYMANLVAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTTCIGQACSMGAFLLAGGAPGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG ++E I + T
Sbjct: 150 ---------SDIDIHAKEILHIRHRLNTLLAHHTGQTLETIERDT 185
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLIGPVEDY 55
>gi|319789118|ref|YP_004150751.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
gi|317113620|gb|ADU96110.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermovibrio
ammonificans HB-1]
Length = 200
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIVIEQTGRGERAYDIYSRLL++RI+ + PIDD +++++VAQLLFL++E +K I++
Sbjct: 8 FVPIVIEQTGRGERAYDIYSRLLKDRIVMLGTPIDDHVANLIVAQLLFLEAEDPEKDIYL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LP++RIMI
Sbjct: 68 YINSPGGVVTAGLAIYDTMQYIKPDVVTICMGQAASMGAVLLAAGAKGKRFALPHARIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A+EI+ LK+ +N + KHT +EK+ + T Y +
Sbjct: 139 ---------TDIEIHAKEILRLKRMLNEILAKHTRQPVEKVEQDTERDYFM 180
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQTGRGERAYDIYSRLL++RI+ + P+
Sbjct: 8 FVPIVIEQTGRGERAYDIYSRLLKDRIVMLGTPID 42
>gi|170086161|ref|XP_001874304.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651856|gb|EDR16096.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/134 (71%), Positives = 111/134 (82%)
Query: 38 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSES 97
S+ S LVPIVIEQTGRGER+YDI+SRLLRER+I + G I DS S+++VAQLLFL++E
Sbjct: 37 SSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLHGTIRDSDSTLIVAQLLFLEAED 96
Query: 98 SKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157
S KPIH+YINSPGGSVT+GL IYDTMQYV PI T+ +G A SM SLLLAAGEKG RH L
Sbjct: 97 STKPIHLYINSPGGSVTAGLAIYDTMQYVSSPIHTYSLGLAASMGSLLLAAGEKGKRHCL 156
Query: 158 PNSRIMIHQPSGGV 171
PN+ IMIHQPSGG
Sbjct: 157 PNASIMIHQPSGGA 170
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 72/98 (73%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDTMQYV PI T+ +G A SM SLLLAAGEKG RH LPN+ IM
Sbjct: 103 LYINSPGGSVTAGLAIYDTMQYVSSPIHTYSLGLAASMGSLLLAAGEKGKRHCLPNASIM 162
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
IHQPSGG GQA+DI I A+EI+ +++ + G+Y +H G
Sbjct: 163 IHQPSGGASGQASDIAIHAKEILRIRQVLTGIYQRHCG 200
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 374 SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S+ S LVPIVIEQTGRGER+YDI+SRLLRER+I + G +
Sbjct: 37 SSPPSANLVPIVIEQTGRGERSYDIFSRLLRERVIMLHGTI 77
>gi|398923822|ref|ZP_10660915.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM48]
gi|398174659|gb|EJM62448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM48]
Length = 211
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P +AT C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVATTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|126173838|ref|YP_001049987.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS155]
gi|153000122|ref|YP_001365803.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS185]
gi|160874744|ref|YP_001554060.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS195]
gi|217973910|ref|YP_002358661.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS223]
gi|373948994|ref|ZP_09608955.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS183]
gi|378707997|ref|YP_005272891.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS678]
gi|386325167|ref|YP_006021284.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
BA175]
gi|386340598|ref|YP_006036964.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS117]
gi|418023625|ref|ZP_12662610.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS625]
gi|166214708|sp|A3D305.1|CLPP_SHEB5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214709|sp|A6WLQ1.1|CLPP_SHEB8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|189082464|sp|A9KWH7.1|CLPP_SHEB9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763799|sp|B8E5E9.1|CLPP_SHEB2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|125997043|gb|ABN61118.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
baltica OS155]
gi|151364740|gb|ABS07740.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS185]
gi|160860266|gb|ABX48800.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS195]
gi|217499045|gb|ACK47238.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS223]
gi|315266986|gb|ADT93839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
baltica OS678]
gi|333819312|gb|AEG11978.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
BA175]
gi|334862999|gb|AEH13470.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS117]
gi|353537508|gb|EHC07065.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS625]
gi|373885594|gb|EHQ14486.1| ATP-dependent Clp protease proteolytic subunit [Shewanella baltica
OS183]
Length = 202
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 140/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
H LPNSR+MIHQP GG Q GQA
Sbjct: 121 HCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E + + T
Sbjct: 142 -------------------SDIAIHAKEILGIKNKLNQMLAEHTGQPLEVVERDT 177
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVE 45
>gi|114569888|ref|YP_756568.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
maris MCS10]
gi|122316141|sp|Q0AQ07.1|CLPP_MARMM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114340350|gb|ABI65630.1| ATP-dependent Clp protease proteolytic subunit ClpP [Maricaulis
maris MCS10]
Length = 211
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/231 (44%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H + LVPIV+EQT RGER++DIYSRLL+ERII + GPI+D ++S+++AQLLFL+
Sbjct: 1 MHDPQDVMMNLVPIVVEQTSRGERSFDIYSRLLKERIIFITGPIEDHMASLIIAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SE+ KK I MYINSPGG V++GLGIYDTMQY+ P++T C+G A SM SLLL AGEK MR
Sbjct: 61 SENPKKEISMYINSPGGVVSAGLGIYDTMQYIRSPVSTMCLGMAASMGSLLLTAGEKDMR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+ PN+RIM+HQPSGG + GQA
Sbjct: 121 FAAPNARIMVHQPSGGFR---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A +I +K+++N +YV HTG + ++I
Sbjct: 142 -------------------SDIERHAADIQKIKRRLNEIYVHHTGRTYDEI 173
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + LVPIV+EQT RGER++DIYSRLL+ERII + GP+
Sbjct: 1 MHDPQDVMMNLVPIVVEQTSRGERSFDIYSRLLKERIIFITGPIE 45
>gi|399090712|ref|ZP_10754136.1| protease subunit of ATP-dependent protease [Caulobacter sp. AP07]
gi|398027518|gb|EJL21067.1| protease subunit of ATP-dependent protease [Caulobacter sp. AP07]
Length = 208
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P++T C+G A SM SLLL AG G R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPGQRIALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 131 HQPSGGFR---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHAEDIIKTKRRLNEIYVKHTGRTYEEVEKT 176
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 45
>gi|297182365|gb|ADI18531.1| protease subunit of ATP-dependent clp proteases [uncultured SAR406
cluster bacterium HF4000_22B16]
Length = 202
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 135/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGR ERAYDIYSRLL+ERI+ + PIDDS+SS+++AQ LFL++E K I++
Sbjct: 11 LIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPIDDSISSLIIAQFLFLEAEDPDKDIYL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ I+DTM Y+ P +AT C+GQA SM + LLA G+KG R +LPNSRIMI
Sbjct: 71 YINSPGGYITAGMAIFDTMNYIKPDVATICMGQASSMGAFLLAGGKKGKRSALPNSRIMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 131 HQPMGGAE---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI+IQA+EII L+ ++N L K TG I K+ K + Y +
Sbjct: 142 ---------SDIKIQADEIIRLRGKLNKLLAKQTGQKISKVEKDSDRNYFM 183
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGR ERAYDIYSRLL+ERI+ + P+
Sbjct: 11 LIPMVVEQTGRTERAYDIYSRLLKERIVFLGTPID 45
>gi|398948873|ref|ZP_10672975.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM33]
gi|398160047|gb|EJM48329.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM33]
Length = 211
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAQGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|134300401|ref|YP_001113897.1| ATP-dependent Clp protease proteolytic subunit [Desulfotomaculum
reducens MI-1]
gi|172044337|sp|A4J7L9.1|CLPP_DESRM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134053101|gb|ABO51072.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Desulfotomaculum reducens MI-1]
Length = 195
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 134/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPIDD ++++V+AQ LFL++E +K IH+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIDDHIANLVIAQFLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S LLAAG G R++LP +RIMI
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKPAVSTICLGQAASMGSFLLAAGAPGKRYALPMARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +K +N HTG +E+I + T Y +
Sbjct: 135 ---------TDIDIHAKEILRMKDLLNDRLAHHTGQPLEQITRDTERDYFM 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPID 38
>gi|398840797|ref|ZP_10598029.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM102]
gi|398860148|ref|ZP_10615806.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM79]
gi|398903999|ref|ZP_10652021.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM50]
gi|398109809|gb|EJL99725.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM102]
gi|398176428|gb|EJM64147.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM50]
gi|398235353|gb|EJN21184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM79]
Length = 211
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAQGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|426408621|ref|YP_007028720.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
UW4]
gi|426266838|gb|AFY18915.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
UW4]
Length = 211
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAQGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|375084538|ref|ZP_09731403.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
gi|374568042|gb|EHR39235.1| ATP-dependent Clp protease proteolytic subunit [Megamonas
funiformis YIT 11815]
Length = 198
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 109/127 (85%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+EQ+GRGERAYDIYSRLL++RII + GPIDD++++VV+AQLLFL+SE K IH+Y
Sbjct: 4 VPMVVEQSGRGERAYDIYSRLLKDRIIFLGGPIDDNVANVVIAQLLFLESEDPDKDIHLY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LLAAG KG R++LP SRIMIH
Sbjct: 64 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSVLLAAGAKGKRYALPYSRIMIH 123
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 124 QPLGGAQ 130
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+EQ+GRGERAYDIYSRLL++RII + GP+
Sbjct: 4 VPMVVEQSGRGERAYDIYSRLLKDRIIFLGGPID 37
>gi|349699184|ref|ZP_08900813.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
europaeus LMG 18494]
Length = 211
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +S++V AQLL+L+S + K I
Sbjct: 14 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSALVSAQLLYLESVNPSKEISF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPNSR+M+
Sbjct: 74 YINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGRRFALPNSRVMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ ++K++N +Y +HTG ++E+I
Sbjct: 145 ---------SDIEIQAQEILTIRKRLNEIYKEHTGRTLEEI 176
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 14 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 47
>gi|365855578|ref|ZP_09395623.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Acetobacteraceae bacterium AT-5844]
gi|363719005|gb|EHM02324.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Acetobacteraceae bacterium AT-5844]
Length = 218
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQT RGER++DIYSRLL+ERII + GPI D ++S++ AQLLFL+SE+ K I
Sbjct: 14 LIPMVIEQTARGERSFDIYSRLLKERIIFLTGPIFDQVASLICAQLLFLESENPNKDIAF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL +YDTMQY+ P++T C+G A S SLLL AGEKG R +LPNS++MI
Sbjct: 74 YINSPGGVVTAGLAMYDTMQYIRAPVSTVCLGMAASAGSLLLTAGEKGKRFALPNSQVMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI IQA EI+ ++++N +YV+HTG IE+I K+
Sbjct: 145 ---------TDIAIQAREILKTRERLNKIYVQHTGQPIEEIEKN 179
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L+P+VIEQT RGER++DIYSRLL+ERII + GP+
Sbjct: 14 LIPMVIEQTARGERSFDIYSRLLKERIIFLTGPI 47
>gi|253575671|ref|ZP_04853007.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845009|gb|EES73021.1| clp protease [Paenibacillus sp. oral taxon 786 str. D14]
Length = 196
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 148/261 (56%), Gaps = 67/261 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL++RII + IDD ++++V+AQLLFL +E +K IH+
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKDRIIFLSNAIDDEVANLVIAQLLFLAAEDPEKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+GIYDTMQY+ P ++T CVG A SM SLLL AG G R++LPNS +MI
Sbjct: 63 YINSPGGSVTAGMGIYDTMQYIKPDVSTICVGMAASMGSLLLTAGAPGKRYALPNSEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 123 HQPLGGVR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+I A+ II ++++N +YV+ TG +EKI + T F++
Sbjct: 134 ---------TDIKIHADWIIKTRQKLNQIYVERTGQPLEKIERDTDR---------DFFM 175
Query: 285 NGLYVKHTGLSIEKIGKSTNL 305
+ K G+ + I K TNL
Sbjct: 176 SAEEAKAYGIIDQVISKPTNL 196
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVP+V+EQT RGER+YDIYSRLL++RII
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKDRII 30
>gi|290474663|ref|YP_003467543.1| clpA-clpP ATP-dependent serine protease proteolytic subunit
[Xenorhabdus bovienii SS-2004]
gi|289173976|emb|CBJ80763.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Xenorhabdus bovienii SS-2004]
Length = 207
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL++RII + GP++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTARGERAFDIYSRLLKDRIIFLTGPVEDHMANLIVAQMLFLEAENPEKDINL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +EKI + T
Sbjct: 147 ---------TDIEIHAQEILKVKARMNELMAKHTGKPLEKIVEDT 182
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL++RII + GPV
Sbjct: 16 LVPMVVEQTARGERAFDIYSRLLKDRIIFLTGPVE 50
>gi|119503321|ref|ZP_01625405.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
gi|119460967|gb|EAW42058.1| ATP-dependent Clp protease proteolytic subunit [marine gamma
proteobacterium HTCC2080]
Length = 212
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQT RGER++DIYSRLL+ER+I +GP++D++++++VAQLLFL+SE+ K IH+
Sbjct: 15 LIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVEDNMANLIVAQLLFLESENPDKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ+V P ++T C+GQA SM + LL+ G G R+ LPN+R MI
Sbjct: 75 YINSPGGSVTAGLSIYDTMQFVKPDVSTMCLGQAASMGAFLLSGGASGKRYILPNARTMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 135 HQPSGGAQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA+EI+ +++++N L +HTG +E I + T
Sbjct: 146 ---------TDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDT 181
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIEQT RGER++DIYSRLL+ER+I +GPV
Sbjct: 15 LIPMVIEQTSRGERSFDIYSRLLKERVIFAVGPVE 49
>gi|226470102|emb|CAX70332.1| ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit
homolog [Schistosoma japonicum]
Length = 179
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 90/131 (68%), Positives = 109/131 (83%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVPIV+++T GERAYDIYSRLL++RIIC+MG I D ++ +VVAQLL+LQSE K P
Sbjct: 45 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAISDEVAGLVVAQLLYLQSEDKKIP 104
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IH+YINSPGG VT+GL IYDTMQ++ PP+ATWCVGQA SM SLLLAAG G+R +LP+SR
Sbjct: 105 IHIYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSR 164
Query: 162 IMIHQPSGGVQ 172
IM+HQPSG
Sbjct: 165 IMVHQPSGSAH 175
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
I I+ P G V GL IYDTMQ++ PP+ATWCVGQA SM SLLLAAG G+R +LP+SRIM
Sbjct: 107 IYINSPGGVVTAGLAIYDTMQFIKPPVATWCVGQASSMGSLLLAAGAPGLRFALPHSRIM 166
Query: 222 IHQPSGGVQGQ 232
+HQPSG G+
Sbjct: 167 VHQPSGSAHGE 177
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVPIV+++T GERAYDIYSRLL++RIIC+MG +S
Sbjct: 45 SMSLVPIVLDKTTHGERAYDIYSRLLKDRIICLMGAIS 82
>gi|381170418|ref|ZP_09879575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
gi|384426842|ref|YP_005636199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
campestris pv. raphani 756C]
gi|390990707|ref|ZP_10260988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|341935942|gb|AEL06081.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
campestris pv. raphani 756C]
gi|372554560|emb|CCF67963.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|380689079|emb|CCG36062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Xanthomonas
citri pv. mangiferaeindicae LMG 941]
Length = 196
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 134/222 (60%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++V+VAQLLFL++++ +K I +YIN
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDHMANVIVAQLLFLEADNPEKDISIYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MIHQP
Sbjct: 61 SPGGVVTAGMAIYDTMQYIKPDVSTICVGQAASMGALLLASGAAGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I + T
Sbjct: 129 ------TDIDIHAREILTLRSRLNEILAKHTGQSLETIARDT 164
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+EQT RGERAYDIYSRLL+ER+I ++GP+
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPID 32
>gi|345864967|ref|ZP_08817161.1| ATP-dependent Clp protease proteolytic subunit [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345878324|ref|ZP_08830043.1| Na+/H+ antiporter [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224679|gb|EGV51063.1| Na+/H+ antiporter [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|345123905|gb|EGW53791.1| ATP-dependent Clp protease proteolytic subunit [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 213
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGER++DIYSRLL+ER+I ++GP++D+++++VVAQLLFL+SE+ K +H+
Sbjct: 17 LVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDNMANLVVAQLLFLESENPDKDVHL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL G G R+ LPNSR+MI
Sbjct: 77 YINSPGGSVTAGMSIYDTMQFIRPDVSTMCIGQAASMGALLLTGGAPGKRYCLPNSRMMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 137 HQPLGGVQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++N + HTG S+++I T
Sbjct: 148 ---------SDIEIHAKEILLLRERLNEILAHHTGQSLKQIAADT 183
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGER++DIYSRLL+ER+I ++GPV
Sbjct: 17 LVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVE 51
>gi|393769361|ref|ZP_10357885.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
sp. GXF4]
gi|392725260|gb|EIZ82601.1| ATP-dependent Clp protease proteolytic subunit [Methylobacterium
sp. GXF4]
Length = 208
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 129/215 (60%), Gaps = 58/215 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERA+DIYSRLLRERII + GP++D +S++VAQLLFL++E+ KK I
Sbjct: 12 LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDYGASLIVAQLLFLEAENPKKEISF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQ++ P+ T CVGQA SM SLLL AGE G R +LPN+RIM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQFIRCPVTTLCVGQAASMGSLLLTAGEPGHRFALPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
TDI I A EI LK+++N +YVKHTG
Sbjct: 143 ---------TDILIHAREIEALKRRLNEIYVKHTG 168
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERA+DIYSRLLRERII + GPV Y
Sbjct: 12 LVPMVVEQSSRGERAFDIYSRLLRERIIFLTGPVEDY 48
>gi|78043074|ref|YP_359188.1| ATP-dependent Clp protease proteolytic subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|90101405|sp|Q3AF96.1|CLPP_CARHZ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77995189|gb|ABB14088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Carboxydothermus hydrogenoformans Z-2901]
Length = 195
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGER+YDI+SRLL++R I + GPIDD ++++V+AQ+LFL++E +K IH+
Sbjct: 4 LVPIVIEQTSRGERSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQY+ P ++T C+GQA SM + LLAAG KG R SLP +RIMI
Sbjct: 64 YINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ ++ +N L KHTG EKI + T
Sbjct: 135 ---------TDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDT 170
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGER+YDI+SRLL++R I + GP+
Sbjct: 4 LVPIVIEQTSRGERSYDIWSRLLKDRTIFIGGPID 38
>gi|349685703|ref|ZP_08896845.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
oboediens 174Bp2]
Length = 211
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 136/221 (61%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +S++V AQLL+L+S + K I
Sbjct: 14 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSALVSAQLLYLESVNPTKEISF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPNSR+M+
Sbjct: 74 YINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKGRRFALPNSRVMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ ++K++N +Y +HTG ++E+I
Sbjct: 145 ---------SDIEIQAQEILTIRKRLNEIYKEHTGRTLEEI 176
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 14 LVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 47
>gi|299755201|ref|XP_001828495.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
okayama7#130]
gi|298411115|gb|EAU93328.2| ATP-dependent Clp protease proteolytic subunit [Coprinopsis cinerea
okayama7#130]
Length = 254
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 108/127 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++VVAQLLFL++E S KPIH+
Sbjct: 46 LVPMVIEQTGRGERSYDIFSRLLRERVIMLHGPIRDTDSTLVVAQLLFLEAEDSTKPIHL 105
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQYV PI T+ +G A SM SLLLAAG KG RH LPN+ IMI
Sbjct: 106 YINSPGGSVTAGLAIYDTMQYVSAPIHTYGLGLAASMGSLLLAAGAKGRRHCLPNASIMI 165
Query: 165 HQPSGGV 171
HQPSGG
Sbjct: 166 HQPSGGA 172
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 70/96 (72%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDTMQYV PI T+ +G A SM SLLLAAG KG RH LPN+ IM
Sbjct: 105 LYINSPGGSVTAGLAIYDTMQYVSAPIHTYGLGLAASMGSLLLAAGAKGRRHCLPNASIM 164
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
IHQPSGG GQATDI I A+EI+ +++ + G+Y +H
Sbjct: 165 IHQPSGGASGQATDIAIHAKEILRIRQLLTGIYQRH 200
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 32/34 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+VIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 46 LVPMVIEQTGRGERSYDIFSRLLRERVIMLHGPI 79
>gi|323495056|ref|ZP_08100145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
LMG 20546]
gi|323310713|gb|EGA63888.1| ATP-dependent Clp protease proteolytic subunit [Vibrio brasiliensis
LMG 20546]
Length = 208
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRHVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|312961789|ref|ZP_07776287.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens WH6]
gi|395495006|ref|ZP_10426585.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
PAMC 25886]
gi|395794594|ref|ZP_10473915.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
Ag1]
gi|421137891|ref|ZP_15597967.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens BBc6R8]
gi|311284048|gb|EFQ62631.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens WH6]
gi|395341259|gb|EJF73079.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
Ag1]
gi|404510950|gb|EKA24844.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens BBc6R8]
Length = 211
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 140/225 (62%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|84387735|ref|ZP_00990751.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
12B01]
gi|218710174|ref|YP_002417795.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
LGP32]
gi|407071670|ref|ZP_11102508.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
cyclitrophicus ZF14]
gi|417949951|ref|ZP_12593080.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
ATCC 33789]
gi|254763809|sp|B7VI00.1|CLPP_VIBSL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|84377418|gb|EAP94285.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
12B01]
gi|218323193|emb|CAV19370.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
LGP32]
gi|342807381|gb|EGU42570.1| ATP-dependent Clp protease proteolytic subunit [Vibrio splendidus
ATCC 33789]
Length = 208
Score = 194 bits (493), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQLLFL+SE+ K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E + + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDT 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|209694398|ref|YP_002262326.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
salmonicida LFI1238]
gi|226706438|sp|B6EHK3.1|CLPP_ALISL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|208008349|emb|CAQ78503.1| ATP-dependent Clp protease proteolytic subunit [Aliivibrio
salmonicida LFI1238]
Length = 207
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +KK++N L +HTG +E I K T
Sbjct: 147 ---------SDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEKDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|392959640|ref|ZP_10325122.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|421052494|ref|ZP_15515483.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|421058665|ref|ZP_15521332.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
gi|421066386|ref|ZP_15528000.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|421070550|ref|ZP_15531682.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392443225|gb|EIW20776.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelosinus
fermentans B4]
gi|392448176|gb|EIW25379.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A11]
gi|392456193|gb|EIW32947.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans DSM 17108]
gi|392456278|gb|EIW33029.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans A12]
gi|392460320|gb|EIW36635.1| ATP-dependent Clp protease proteolytic subunit [Pelosinus
fermentans B3]
Length = 201
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 144/250 (57%), Gaps = 67/250 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIV+EQ+ RGER+YDI+SRLL++RII + GPIDD+++++V+AQLLFL+SE +K IH+
Sbjct: 3 FVPIVVEQSSRGERSYDIFSRLLKDRIIFIGGPIDDNVANLVIAQLLFLESEDPEKDIHV 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+G A SM +LLL AG KG R++LP +RIMI
Sbjct: 63 YINSPGGVVTAGLAIYDTMQYIKPDVSTICLGSAASMGALLLTAGAKGKRYALPYARIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGTQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+I A EI+ L++ +NG+ ++HTG + +KI HD F++
Sbjct: 134 ---------TDIEIHAREILRLRELLNGILIQHTGQTKDKIE---------HDTERDFFM 175
Query: 285 NGLYVKHTGL 294
+ K GL
Sbjct: 176 SAEQAKEYGL 185
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+ RGER+YDI+SRLL++RII + GP+
Sbjct: 3 FVPIVVEQSSRGERSYDIFSRLLKDRIIFIGGPID 37
>gi|372488837|ref|YP_005028402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dechlorosoma
suillum PS]
gi|359355390|gb|AEV26561.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dechlorosoma
suillum PS]
Length = 213
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERA+DIYSRLL+ERI+ ++GP++D+ +++VVAQLLFL++++ K I
Sbjct: 16 LVPMVVEQSGRGERAFDIYSRLLKERIVFLVGPVNDASANLVVAQLLFLEADNPDKDIFF 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LL AG KG R +LPNSR+MI
Sbjct: 76 YINSPGGSVTAGLSIYDTMQFIKPDVSTLCMGQAASMGAFLLNAGAKGKRFALPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPMGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI++L+ ++N + KH+G +++I K T
Sbjct: 147 ---------SDIEIHAKEILSLRAKLNEIMAKHSGQPVDRIEKDT 182
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERA+DIYSRLL+ERI+ ++GPV+
Sbjct: 16 LVPMVVEQSGRGERAFDIYSRLLKERIVFLVGPVN 50
>gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
gi|254039949|gb|ACT56745.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 216
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 145/239 (60%), Gaps = 58/239 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ V G I+D +++++ AQLLFL++E+ +K I +
Sbjct: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMATLICAQLLFLEAENPQKEISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ PPI+T+C+GQA SM SLLL+AGEKGMR +LPN+RI++
Sbjct: 78 YINSPGGVVTAGMAIYDTMQFIKPPISTFCMGQAASMGSLLLSAGEKGMRFALPNARILL 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA + RH
Sbjct: 138 HQPSGGFS---------------------GQASDIE-----------RH----------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283
A++I+ +K+++N +YVK+ G + E++ K+ +++ C W
Sbjct: 155 ---------------AQDIVKIKRRLNEIYVKNCGKTYEEVEKTLDRDHIMSASEACDW 198
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERI+ V G + + T
Sbjct: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFVTGQIEDHMAT 57
>gi|86148885|ref|ZP_01067136.1| ATP-dependent Clp protease proteolytic subunit, partial [Vibrio sp.
MED222]
gi|85833328|gb|EAQ51535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. MED222]
Length = 198
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQLLFL+SE+ K I++
Sbjct: 6 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQLLFLESENPDKDIYL 65
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G RH LPNSR+MI
Sbjct: 66 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGTPGKRHVLPNSRVMI 125
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 126 HQPLGGFQ---------------------GQA---------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E + + T
Sbjct: 137 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVVERDT 172
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 6 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 40
>gi|436842089|ref|YP_007326467.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
gi|432170995|emb|CCO24366.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
hydrothermalis AM13 = DSM 14728]
Length = 202
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+PIVIE TGR ERAYDIYSRLL++RII + G ++D ++SV+ AQLLFL+SE +K I+MY
Sbjct: 5 IPIVIETTGRTERAYDIYSRLLKDRIILLSGEVNDHVASVICAQLLFLESEDPEKEIYMY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ IYDTMQY+ P++T C+GQA SM + LL+AGEKG R+SLP+SRI+IH
Sbjct: 65 INSPGGVVTAGMAIYDTMQYISAPVSTLCMGQAASMGAFLLSAGEKGHRYSLPHSRILIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA+EI+ LKK +N + +TG S+E++ K T Y +
Sbjct: 135 --------TDIGIQAKEILRLKKSLNSIMAANTGKSLEEVEKDTDRDYFM 176
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+PIVIE TGR ERAYDIYSRLL++RII + G V+
Sbjct: 5 IPIVIETTGRTERAYDIYSRLLKDRIILLSGEVN 38
>gi|398345034|ref|ZP_10529737.1| ATP-dependent Clp protease proteolytic subunit [Leptospira inadai
serovar Lyme str. 10]
Length = 198
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+VIEQTGRGER+YDIYSRLL++RII + I D ++VV+AQLLFL +E+ + I++
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAISDEYANVVIAQLLFLDAENPDRDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V+SGL IYDTMQY+ + T CVGQA SMA+LLLA G KG R +LP+SRIM+
Sbjct: 63 YINSPGGYVSSGLAIYDTMQYIKADVRTLCVGQASSMAALLLAGGAKGKRSALPHSRIMM 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP+GG GQA
Sbjct: 123 HQPTGG---------------------ATGQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQA+E++ LK+ +NGLY KHTG IE+I K T
Sbjct: 134 ---------SDIAIQAKEVLKLKEILNGLYTKHTGKPIEQIQKDT 169
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+VIEQTGRGER+YDIYSRLL++RII + +S
Sbjct: 3 VIPVVIEQTGRGERSYDIYSRLLKDRIIFLGNAIS 37
>gi|330808572|ref|YP_004353034.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423696404|ref|ZP_17670894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens Q8r1-96]
gi|327376680|gb|AEA68030.1| endopeptidase Clp (ATP-dependent Clp protease proteolytic subunit
ClpP) [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|388003857|gb|EIK65184.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens Q8r1-96]
Length = 211
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAHGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|395784427|ref|ZP_10464265.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
melophagi K-2C]
gi|395423677|gb|EJF89871.1| ATP-dependent Clp protease proteolytic subunit [Bartonella
melophagi K-2C]
Length = 210
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ + RH+
Sbjct: 131 HQPSGGFQ---------------------GQVSDIE-----------RHA---------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
++II +K+++N +YV+HTG E I K+
Sbjct: 149 ----------------QDIIKMKRRLNEIYVQHTGQDYEIIEKT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|121605848|ref|YP_983177.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Polaromonas
naphthalenivorans CJ2]
gi|120594817|gb|ABM38256.1| ATP-dependent Clp protease proteolytic subunit ClpP [Polaromonas
naphthalenivorans CJ2]
Length = 216
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 25 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVG A SM + LL++G KG R SLPNSR+MI
Sbjct: 85 YINSPGGSVTAGMAIYDTMQFIKPDVSTLCVGMAASMGAFLLSSGTKGKRFSLPNSRVMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 145 HQPSGGAQ---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI+I A +I+ + Q+N + +TG ++EKI + T Y +
Sbjct: 156 ---------SDIEIHARDILKTRDQLNRILAHNTGQTVEKIERDTERDYFM 197
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 25 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 59
>gi|348026429|ref|YP_004766234.1| ATP-dependent Clp protease proteolytic subunit [Megasphaera
elsdenii DSM 20460]
gi|341822483|emb|CCC73407.1| ATP-dependent Clp protease proteolytic subunit [Megasphaera
elsdenii DSM 20460]
Length = 201
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQT +GER+YDIYSRLL++RI+ + GPIDD++++ ++AQLLFL++E+ K IH+Y
Sbjct: 6 VPIVVEQTAQGERSYDIYSRLLKDRIVFLGGPIDDAVANSIIAQLLFLEAENPDKDIHLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ IYDTMQY+ P ++T CVG A SMAS+LL AG KG R +LP+S++MIH
Sbjct: 66 INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMASVLLTAGAKGKRFALPHSQVMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGVQ GQA
Sbjct: 126 QPLGGVQ---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A EI+ ++K++NG+ KHTG I+ I K T
Sbjct: 136 --------TEIEIHAREILRMRKELNGILSKHTGQPIDVIQKDT 171
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQT +GER+YDIYSRLL++RI+ + GP+
Sbjct: 6 VPIVVEQTAQGERSYDIYSRLLKDRIVFLGGPID 39
>gi|254514393|ref|ZP_05126454.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
gi|219676636|gb|EED33001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [gamma
proteobacterium NOR5-3]
Length = 213
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER++ V+G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 17 LVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P I+T C+GQA SM + LL+ G KG R+ LPN+R MI
Sbjct: 77 YINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 137 HQPSGGAQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA+EI+ +++++N L +HTG +E I + T
Sbjct: 148 ---------TDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDT 183
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER++ V+G V
Sbjct: 17 LVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVE 51
>gi|292487467|ref|YP_003530339.1| ATP-dependent Clp protease proteolytic subunit ClpP [Erwinia
amylovora CFBP1430]
gi|292898709|ref|YP_003538078.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
ATCC 49946]
gi|428784402|ref|ZP_19001893.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
amylovora ACW56400]
gi|291198557|emb|CBJ45665.1| ATP-dependent clp protease proteolytic subunit [Erwinia amylovora
ATCC 49946]
gi|291552886|emb|CBA19931.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
amylovora CFBP1430]
gi|312171571|emb|CBX79829.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
amylovora ATCC BAA-2158]
gi|426275964|gb|EKV53691.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
amylovora ACW56400]
Length = 207
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EII K+ +N L KHTG +IE I + T
Sbjct: 147 ---------SDIDIHAREIIKTKQMMNELMAKHTGQTIENIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|387894467|ref|YP_006324764.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens A506]
gi|423692342|ref|ZP_17666862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens SS101]
gi|213521159|gb|ACJ50516.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens SS101]
gi|387164635|gb|AFJ59834.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens A506]
gi|387998810|gb|EIK60139.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
fluorescens SS101]
Length = 211
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|404399557|ref|ZP_10991141.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fuscovaginae UPB0736]
Length = 211
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|337286231|ref|YP_004625704.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
gi|335359059|gb|AEH44740.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfatator indicus DSM 15286]
Length = 202
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 130/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIEQT RGERAYDIYSRLLRERI+ + PIDD L+++V+AQLLFL++E + I +Y
Sbjct: 3 VPIVIEQTARGERAYDIYSRLLRERIVFIGAPIDDHLANLVIAQLLFLEAEDPDRDITLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSGL IYDTMQY+ P I T C+GQA SMA++LLA G KG R++LP+SRIM+H
Sbjct: 63 INSPGGIVTSGLAIYDTMQYIKPDICTLCLGQAASMAAVLLAGGTKGKRYALPHSRIMLH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP G Q GQA
Sbjct: 123 QPIGSFQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD+ IQA EI+ L+ +N + HTG IE+I K T
Sbjct: 133 --------TDVDIQAREILRLRAMLNEILANHTGQPIEQIQKDT 168
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIEQT RGERAYDIYSRLLRERI+ + P+
Sbjct: 3 VPIVIEQTARGERAYDIYSRLLRERIVFIGAPID 36
>gi|182679147|ref|YP_001833293.1| endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
gi|182635030|gb|ACB95804.1| Endopeptidase Clp [Beijerinckia indica subsp. indica ATCC 9039]
Length = 217
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE T RGER +DIYSRLLRERII + G ++D+++SV++AQLLFL++E+ KK I M
Sbjct: 16 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVEDNMASVIIAQLLFLEAENPKKEISM 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P ++T CVGQA SM SLLL AGE GMR++ PNSRIM+
Sbjct: 76 YINSPGGVVTAGLAIYDTMQFIRPKVSTLCVGQAASMGSLLLCAGEAGMRYATPNSRIMV 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA + +RH
Sbjct: 136 HQPSGGFS---------------------GQASDI-----------LRH----------- 152
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
AE+I+ +K+++N +YVKHTG + I
Sbjct: 153 ---------------AEDIMKVKRRLNEIYVKHTGRDYDTI 178
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 27/35 (77%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIE T RGER +DIYSRLLRERII + G V
Sbjct: 16 LIPQVIENTSRGERGFDIYSRLLRERIIFLTGQVE 50
>gi|88705172|ref|ZP_01102884.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
gi|88700867|gb|EAQ97974.1| ATP-dependent Clp protease, proteolytic subunit [Congregibacter
litoralis KT71]
Length = 206
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER++ V+G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 10 LVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVEDHMANLIVAQLLFLESENPDKDIHL 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P I+T C+GQA SM + LL+ G KG R+ LPN+R MI
Sbjct: 70 YINSPGGSVTAGLSIYDTMQFIKPDISTMCLGQAASMGAFLLSGGTKGKRYCLPNARTMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 130 HQPSGGAQ---------------------GQA---------------------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA+EI+ +++++N L +HTG +E I + T
Sbjct: 141 ---------TDIDIQAKEILIIRERLNRLMAEHTGQPLEVIERDT 176
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER++ V+G V
Sbjct: 10 LVPMVVEQTSRGERSYDIYSRLLKERVVFVVGQVE 44
>gi|356538559|ref|XP_003537770.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like isoform 1 [Glycine max]
gi|356538561|ref|XP_003537771.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like isoform 2 [Glycine max]
Length = 238
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 113/148 (76%), Gaps = 1/148 (0%)
Query: 23 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSL 82
F G L H KT S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI D
Sbjct: 8 FAGNLLFHGRKT-QTQCIRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDT 66
Query: 83 SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMA 142
+ VVVAQLLFL+SE+ KPI+MY+NSPGG+VT+GL IYDTMQY+ P+ T C+GQA SM
Sbjct: 67 AHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICMGQAASMG 126
Query: 143 SLLLAAGEKGMRHSLPNSRIMIHQPSGG 170
SLLLAAG KG R SLPN+ IMIHQPSGG
Sbjct: 127 SLLLAAGAKGERRSLPNATIMIHQPSGG 154
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 359 FQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
F G L H KT S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 8 FAGNLLFHGRKT-QTQCIRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIS 63
>gi|227500202|ref|ZP_03930271.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
gi|227217724|gb|EEI83028.1| endopeptidase Clp [Anaerococcus tetradius ATCC 35098]
Length = 197
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQT RGERAYDIYSRLL++RII + G + D +S +++AQLLFL+SE K I
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM Y+ P ++T C+GQA SMA++LL++G KG R+SLP+S IMI
Sbjct: 67 YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGAQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQAE+II +K+++N + +TG S++KI K T
Sbjct: 138 ---------SDIVIQAEQIIKIKEKLNKILSDNTGQSLKKIEKDT 173
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP V+EQT RGERAYDIYSRLL++RII + G V
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEV 40
>gi|319408364|emb|CBI82017.1| ATP-dependent Clp protease, proteolytic subunit [Bartonella
schoenbuchensis R1]
Length = 210
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++ +V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDGMAMLVCAQLLFLEAENPKKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ PP++T C+GQA SM SLLL AG KG R SLPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGAKGHRFSLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQ + RH+
Sbjct: 131 HQPSGGFQ---------------------GQVSDIE-----------RHA---------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
++II +K+++N +YV+HTG E I K+
Sbjct: 149 ----------------QDIIKMKQRLNEIYVQHTGQDYEIIEKT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|440229732|ref|YP_007343525.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
marcescens FGI94]
gi|440051437|gb|AGB81340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
marcescens FGI94]
Length = 207
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+N+K ++N L KHTG +E+I + T
Sbjct: 147 ---------TDIEIHAREILNVKARMNELMAKHTGQPLEQIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|317486004|ref|ZP_07944859.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345887722|ref|ZP_08838886.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
gi|316922777|gb|EFV44008.1| Clp protease [Bilophila wadsworthia 3_1_6]
gi|345041509|gb|EGW45656.1| ATP-dependent Clp protease proteolytic subunit [Bilophila sp.
4_1_30]
Length = 207
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+E +GR ERAYDI+SRLL++RI+ + ++D+++S++ AQLLFL+S+ +K I++Y
Sbjct: 9 VPIVVETSGRTERAYDIFSRLLKDRIVLLGSEVNDAVASLICAQLLFLESQDPEKEIYLY 68
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTM Y+ PPIAT C+G+A SM + LL+AG+KGMR++LPNS++MIH
Sbjct: 69 INSPGGSVTAGMAIYDTMNYITPPIATVCMGRAASMGAFLLSAGQKGMRYALPNSQVMIH 128
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 129 QPLGGFQ---------------------GQA----------------------------- 138
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ +++ +NGL KHTG IEKI + T
Sbjct: 139 --------TDIDIHAREILRMRETLNGLLAKHTGQPIEKIAQDT 174
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+E +GR ERAYDI+SRLL++RI+ + V+
Sbjct: 9 VPIVVETSGRTERAYDIFSRLLKDRIVLLGSEVN 42
>gi|237753395|ref|ZP_04583875.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
winghamensis ATCC BAA-430]
gi|229375662|gb|EEO25753.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
winghamensis ATCC BAA-430]
Length = 196
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 131/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP VIE+TGRGERAYDIYSRLL++RII + G IDD L+S +VAQLLFL++E +K I++Y
Sbjct: 5 VPTVIEKTGRGERAYDIYSRLLKDRIILLSGQIDDGLASSIVAQLLFLEAEDPEKDIYLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSGL IYDTM YV P I+T C+GQA SM + LL+ G KG R+SLPNSRIMIH
Sbjct: 65 INSPGGVVTSGLSIYDTMNYVKPDISTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+IQA+EI+ LK +N + +T +EKI K T
Sbjct: 135 --------TEIEIQAKEILRLKSSLNEILASNTNQPLEKIAKDT 170
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP VIE+TGRGERAYDIYSRLL++RII + G +
Sbjct: 5 VPTVIEKTGRGERAYDIYSRLLKDRIILLSGQID 38
>gi|119774361|ref|YP_927101.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
amazonensis SB2B]
gi|171704645|sp|A1S4X5.1|CLPP_SHEAM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|119766861|gb|ABL99431.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
amazonensis SB2B]
Length = 202
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G +++ +++++VAQLLFL+SE+ K I++
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESENPDKEIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA GEKGMRH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPKVSTVCIGQACSMGAFLLAGGEKGMRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + HTG +E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKHKLNQMLSHHTGQPMEVIERDT 178
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G V
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVE 46
>gi|442771747|gb|AGC72425.1| ATP-dependent Clp protease proteolytic subunit [uncultured
bacterium A1Q1_fos_2037]
Length = 200
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 57/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGERAYDIYSRLL++ II + PIDD ++S+++AQ+LFL++E+ ++ IH+
Sbjct: 2 LIPMVVEQTNRGERAYDIYSRLLKDNIIFLGRPIDDEVASLLIAQMLFLEAENPERDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL +YDTMQY+ P +AT+C+GQA SMA++LLAAG+ G R LPNSR++I
Sbjct: 62 YINSPGGSVTAGLAVYDTMQYIKPDVATFCIGQAASMAAVLLAAGKAGKRTVLPNSRVLI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP W G
Sbjct: 122 HQP-----------------------WTQG------------------------------ 128
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+QGQATDI+I A E++ L+ +I+ + HTG E+I T
Sbjct: 129 ----MQGQATDIEIHARELLKLRDKIDEILAFHTGKEKEQIHDDT 169
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGERAYDIYSRLL++ II + P+
Sbjct: 2 LIPMVVEQTNRGERAYDIYSRLLKDNIIFLGRPID 36
>gi|395649556|ref|ZP_10437406.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 211
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAHGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|358450532|ref|ZP_09160990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
manganoxydans MnI7-9]
gi|385331926|ref|YP_005885877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
adhaerens HP15]
gi|311695076|gb|ADP97949.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
adhaerens HP15]
gi|357225181|gb|EHJ03688.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
manganoxydans MnI7-9]
Length = 201
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 131/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGER++DIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K IH+
Sbjct: 7 LVPIVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLIVAQLLFLESENPDKDIHL 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P +AT CVGQA SM + LLA G G R LPNSR+MI
Sbjct: 67 YINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPNSRVMI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 127 HQPLGGYQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ ++ +N + HTG +E I K T
Sbjct: 138 ---------TDIEIHTREILKIRHTLNSILAHHTGQDLETIAKDT 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGER++DIYSRLL+ER+I ++GPV
Sbjct: 7 LVPIVIEQTARGERSFDIYSRLLKERVIFMVGPVE 41
>gi|383816700|ref|ZP_09972092.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. M24T3]
gi|383294412|gb|EIC82754.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. M24T3]
Length = 209
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LL AG KG R++LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLTAGAKGKRYALPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ +K ++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIDIHAREILKVKNRMNTLMAQHTGKSLEEIERDT 182
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 50
>gi|262276278|ref|ZP_06054087.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
gi|262220086|gb|EEY71402.1| ATP-dependent Clp protease proteolytic subunit [Grimontia hollisae
CIP 101886]
Length = 207
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQY+ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQYIKPDVSTVCMGQACSMGAFLLAGGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKHRLNTLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|388547449|ref|ZP_10150714.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
M47T1]
gi|388274536|gb|EIK94133.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas sp.
M47T1]
Length = 213
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++V AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLIGPVEDYMANLVCAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTTCIGQACSMGAFLLAGGAKGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EI++++ ++N L HTG ++E+I + T
Sbjct: 150 ---------SDIDIHAREILSIRHRLNELLAFHTGQTLEQIEQDT 185
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLIGPVEDY 55
>gi|254428693|ref|ZP_05042400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
sp. DG881]
gi|196194862|gb|EDX89821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alcanivorax
sp. DG881]
Length = 244
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 52 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDIHL 111
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVGQA SM + LL AG G R +LPN+R+MI
Sbjct: 112 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCVGQAASMGAFLLTAGATGKRFALPNARVMI 171
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 172 HQPLGGFQ---------------------GQA---------------------------- 182
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K Q+N L HTG IE++ K T
Sbjct: 183 ---------SDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDT 218
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 52 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVE 86
>gi|188534634|ref|YP_001908431.1| ATP-dependent Clp protease proteolytic subunit [Erwinia
tasmaniensis Et1/99]
gi|188029676|emb|CAO97555.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
tasmaniensis Et1/99]
Length = 207
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EII K+ +N L KHTG +IE I + T
Sbjct: 147 ---------SDIDIHAREIIKTKQMMNELMAKHTGQTIETIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|150396095|ref|YP_001326562.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
medicae WSM419]
gi|150027610|gb|ABR59727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
medicae WSM419]
Length = 208
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQT 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVE 45
>gi|253826954|ref|ZP_04869839.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
canadensis MIT 98-5491]
gi|313142738|ref|ZP_07804931.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
canadensis MIT 98-5491]
gi|253510360|gb|EES89019.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
canadensis MIT 98-5491]
gi|313131769|gb|EFR49386.1| ATP-dependent Clp protease proteolytic subunit [Helicobacter
canadensis MIT 98-5491]
Length = 196
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/224 (46%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIVIE+TGRGER+YDIYSRLL++RII + G IDD +++ +V+QLLFL++E +K I++Y
Sbjct: 5 VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQIDDGVAASIVSQLLFLEAEDPQKDIYLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSGL IYDTM Y+ P I T C+GQA SM + LL+ G KG R+SLPNSRIMIH
Sbjct: 65 INSPGGVVTSGLSIYDTMNYIKPDICTICIGQAASMGAFLLSCGTKGKRYSLPNSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ LK +N + +T S+EKI K T
Sbjct: 135 --------TDIEIQAKEILRLKATLNEILADNTNQSLEKIAKDT 170
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIVIE+TGRGER+YDIYSRLL++RII + G +
Sbjct: 5 VPIVIEKTGRGERSYDIYSRLLKDRIIMLSGQID 38
>gi|385787570|ref|YP_005818679.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia sp.
Ejp617]
gi|310766842|gb|ADP11792.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia sp.
Ejp617]
Length = 215
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 24 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 83
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 84 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRVMI 143
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 144 HQPLGGFQ---------------------GQA---------------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EII K+ +N L KHTG +IE I + T
Sbjct: 155 ---------SDIDIHAREIIKTKQMMNELMAKHTGQTIETIERDT 190
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 24 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 58
>gi|114800297|ref|YP_760784.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
neptunium ATCC 15444]
gi|114740471|gb|ABI78596.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hyphomonas
neptunium ATCC 15444]
Length = 207
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 109/126 (86%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII V G IDD ++S++ AQLLFL+SE+ K+ I M
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFVTGGIDDGIASLITAQLLFLESENPKREIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V+SGL IYDTMQYV PI+T C+GQA SM SLLLAAGEKG+R +LPN+R+M+
Sbjct: 71 YINSPGGYVSSGLAIYDTMQYVRCPISTVCIGQAASMGSLLLAAGEKGLRIALPNARVML 130
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 131 HQPSGG 136
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII V G +
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFVTGGID 45
>gi|395786089|ref|ZP_10465817.1| ATP-dependent Clp protease proteolytic subunit [Bartonella tamiae
Th239]
gi|423717017|ref|ZP_17691207.1| ATP-dependent Clp protease proteolytic subunit [Bartonella tamiae
Th307]
gi|395424547|gb|EJF90734.1| ATP-dependent Clp protease proteolytic subunit [Bartonella tamiae
Th239]
gi|395427806|gb|EJF93889.1| ATP-dependent Clp protease proteolytic subunit [Bartonella tamiae
Th307]
Length = 210
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 134/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D+++ +V AQLLFL++E+ K I +
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVEDNMAMLVCAQLLFLEAENPTKEISL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG KG R +LPN+RIM+
Sbjct: 71 YINSPGGVVTSGMAIYDTMQFIRPAVSTLCMGQAASMGSLLLTAGAKGHRFALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+ A++II +K+++N +YV+HTG E I
Sbjct: 142 ---------SDIERHAQDIIKMKRRLNEIYVQHTGQKYETI 173
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTNRGERAYDIFSRLLKERIIFINGPVE 45
>gi|294678131|ref|YP_003578746.1| ATP-dependent Clp protease proteolytic subunit ClpP [Rhodobacter
capsulatus SB 1003]
gi|294476951|gb|ADE86339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rhodobacter
capsulatus SB 1003]
Length = 209
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 133/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ERII + GP D +SS++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRLLKERIIFLAGPFHDGMSSLICAQLLFLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T +GQA SM S++ AGEKGMR SLPNSRIM+
Sbjct: 72 YINSPGGVVTSGLAIYDTMQYIRPKVSTLVIGQAASMGSVIACAGEKGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A E +++++ +YV+HTG S+E++ ++
Sbjct: 143 ---------TDIMIHARETEKIRQRLYEIYVRHTGRSLEEVAEA 177
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 30/33 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGP 413
LVP+V+EQT RGERAYDIYSRLL+ERII + GP
Sbjct: 12 LVPMVVEQTSRGERAYDIYSRLLKERIIFLAGP 44
>gi|387872212|ref|YP_005803593.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
pyrifoliae DSM 12163]
gi|283479306|emb|CAY75222.1| ATP-dependent Clp protease proteolytic subunit clpP [Erwinia
pyrifoliae DSM 12163]
Length = 218
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 27 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 87 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRVMI 146
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 147 HQPLGGFQ---------------------GQA---------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EII K+ +N L KHTG +IE I + T
Sbjct: 158 ---------SDIDIHAREIIKTKQMMNELMAKHTGQTIETIERDT 193
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 27 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 61
>gi|110834071|ref|YP_692930.1| ATP-dependent Clp protease, proteolytic subunitclpp [Alcanivorax
borkumensis SK2]
gi|110647182|emb|CAL16658.1| ATP-dependent Clp protease, proteolytic subunitClpP [Alcanivorax
borkumensis SK2]
Length = 218
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 26 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDIHL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AG G R +LPN+R+MI
Sbjct: 86 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 146 HQPLGGFQ---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K Q+N L HTG IE++ K T
Sbjct: 157 ---------SDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDT 192
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 26 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVE 60
>gi|304319808|ref|YP_003853451.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
bermudensis HTCC2503]
gi|303298711|gb|ADM08310.1| Protease subunit of ATP-dependent Clp protease [Parvularcula
bermudensis HTCC2503]
Length = 210
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ERII + G + D +S+++VAQLLFL++++ KK I
Sbjct: 12 LVPMVIEQTSRGERSFDIYSRLLKERIIFLSGQVHDQVSTLIVAQLLFLEADNPKKDIAF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL +YDTM+Y+ P I+T CVG A SM SLLL AG+KGMR SLPNSRIM+
Sbjct: 72 YINSPGGSVTAGLAMYDTMRYIRPQISTMCVGLAASMGSLLLTAGDKGMRFSLPNSRIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPS G Q GQA
Sbjct: 132 HQPSAGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +II KK++N +YV+HTG E I ++
Sbjct: 143 ---------SDIERHARDIIQTKKRLNEIYVEHTGQDYETIERT 177
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+VIEQT RGER++DIYSRLL+ERII + G V
Sbjct: 12 LVPMVIEQTSRGERSFDIYSRLLKERIIFLSGQV 45
>gi|16126206|ref|NP_420770.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
crescentus CB15]
gi|3688205|emb|CAA09090.1| endopeptidase clp [Caulobacter crescentus CB15]
gi|13423424|gb|AAK23938.1| ATP-dependent Clp protease, proteolytic subunit [Caulobacter
crescentus CB15]
Length = 210
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 12 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C+G A SM SLLLAAG G R SLPN+RIM+
Sbjct: 72 YINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKH G + E++ ++
Sbjct: 143 ---------SDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERT 177
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 46
>gi|357974124|ref|ZP_09138095.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
KC8]
Length = 224
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/144 (63%), Positives = 111/144 (77%)
Query: 29 GHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVA 88
G +H ++ LVPIVIEQ+ RGER++DIYSRLLRERII V G ++D ++S++ A
Sbjct: 8 GQFTPPGYHVDPITGALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGAVEDHMASIITA 67
Query: 89 QLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAA 148
QLLFL+SE+ KK I MYINSPGG VT+GL I+DTMQY+ P + T C+GQA SM S LLAA
Sbjct: 68 QLLFLESENPKKDIFMYINSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAA 127
Query: 149 GEKGMRHSLPNSRIMIHQPSGGVQ 172
GE GMR +L NSRIMIHQPSGG Q
Sbjct: 128 GEPGMRMALTNSRIMIHQPSGGAQ 151
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 77/102 (75%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR +L NSRIMIH
Sbjct: 85 INSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRMALTNSRIMIH 144
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
QPSGG QG A+DI+IQA+EI+ ++ ++N LY K+TG IE I
Sbjct: 145 QPSGGAQGMASDIEIQAKEILRMRNRLNSLYAKYTGKPIEVI 186
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 35/51 (68%)
Query: 365 GHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
G +H ++ LVPIVIEQ+ RGER++DIYSRLLRERII V G V
Sbjct: 8 GQFTPPGYHVDPITGALVPIVIEQSNRGERSFDIYSRLLRERIIFVTGAVE 58
>gi|323449375|gb|EGB05263.1| hypothetical protein AURANDRAFT_31167 [Aureococcus anophagefferens]
Length = 194
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 106/128 (82%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIE++ RGERA+DIYSRLL+ERII + GP+ D L+SVV AQLLFL+SE PI M
Sbjct: 1 MVPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISM 60
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P +AT C+GQA SM SLLLAAG GMR +LPN++IM+
Sbjct: 61 YINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQIML 120
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 121 HQPSGGAQ 128
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+VP+VIE++ RGERA+DIYSRLL+ERII + GPV
Sbjct: 1 MVPMVIERSSRGERAFDIYSRLLKERIIILNGPV 34
>gi|255589435|ref|XP_002534960.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
gi|223524291|gb|EEF27423.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus
communis]
Length = 435
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++VVAQLLFL++E+ K I +Y
Sbjct: 243 IPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDMTANLVVAQLLFLEAENPDKDISLY 302
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MIH
Sbjct: 303 INSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLTAGAKGKRFCLPNSRVMIH 362
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 363 QPLGGFQ---------------------GQA----------------------------- 372
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK ++NG+ HTG +I+ I T
Sbjct: 373 --------SDIEIHAKEILYLKDKLNGIMAHHTGQNIDTIANDT 408
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 33/34 (97%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 243 IPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 276
>gi|329894939|ref|ZP_08270738.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
gi|328922668|gb|EGG30003.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium IMCC3088]
Length = 200
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGER+YDIYSRLL+ER+I V+G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 9 LIPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDIHL 68
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM+++ P + T C+GQA SM + LL+AG KG R+ LPN+R MI
Sbjct: 69 YINSPGGSVTAGLAIYDTMKFIKPDVTTTCMGQAASMGAFLLSAGAKGKRYCLPNARTMI 128
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 129 HQPSGGAQ---------------------GQA---------------------------- 139
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQA+EI+ +++++N L +HTG I+ I + T
Sbjct: 140 ---------TDIDIQAKEILIIRERLNRLMAEHTGQPIDVIERDT 175
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGER+YDIYSRLL+ER+I V+G V
Sbjct: 9 LIPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVE 43
>gi|259909254|ref|YP_002649610.1| ATP-dependent Clp protease proteolytic subunit [Erwinia pyrifoliae
Ep1/96]
gi|224964876|emb|CAX56398.1| Putative ATP-dependent Clp protease proteolytic subunit [Erwinia
pyrifoliae Ep1/96]
Length = 207
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R+ LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EII K+ +N L KHTG +IE I + T
Sbjct: 147 ---------SDIDIHAREIIKTKQMMNELMAKHTGQTIETIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|440741131|ref|ZP_20920586.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens BRIP34879]
gi|447917344|ref|YP_007397912.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas poae
RE*1-1-14]
gi|440373752|gb|ELQ10500.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens BRIP34879]
gi|445201207|gb|AGE26416.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas poae
RE*1-1-14]
Length = 211
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|251772219|gb|EES52789.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Leptospirillum ferrodiazotrophum]
Length = 201
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT RGERAYDIYSRLLR+RII + PIDD+++++V+AQ+LFL+SE S K I++
Sbjct: 2 LIPMVVEQTNRGERAYDIYSRLLRDRIIILGTPIDDTVANLVIAQMLFLESEDSSKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDT++++ P ++T C+GQA SM + LL+AG KG R++LPN+RIMI
Sbjct: 62 YINSPGGIVTAGLAIYDTIKFIKPDVSTICIGQAASMGAFLLSAGAKGKRYALPNARIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPMGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A EI+ LK +N + +H G +EK+ + T Y +
Sbjct: 133 ---------TDIEIHAREILKLKADLNRMMSEHCGQPVEKVAQDTDRDYFM 174
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT RGERAYDIYSRLLR+RII + P+
Sbjct: 2 LIPMVVEQTNRGERAYDIYSRLLRDRIIILGTPID 36
>gi|95930403|ref|ZP_01313139.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfuromonas acetoxidans DSM 684]
gi|95133443|gb|EAT15106.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfuromonas acetoxidans DSM 684]
Length = 196
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQTGRGER+YDIYSRLL++RII + G IDD +S++V+AQLLFL+SE +K IH+
Sbjct: 3 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGIDDQISNLVIAQLLFLESEDPEKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P++T CVGQA SM ++LLAAG +G R +LPNSRIMI
Sbjct: 63 YINSPGGVVTAGMAIYDTMQYIKAPVSTICVGQAASMGAVLLAAGAEGKRFTLPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ L++ +N + H IE I + T
Sbjct: 134 ---------SDISIHAQEILRLREDLNRILAHHCSQDIETIARDT 169
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQTGRGER+YDIYSRLL++RII + G +
Sbjct: 3 LVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGGID 37
>gi|295689638|ref|YP_003593331.1| endopeptidase Clp [Caulobacter segnis ATCC 21756]
gi|295431541|gb|ADG10713.1| Endopeptidase Clp [Caulobacter segnis ATCC 21756]
Length = 210
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 12 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C+G A SM SLLLAAG G R SLPN+RIM+
Sbjct: 72 YINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGFR---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKH G + E++ ++
Sbjct: 143 ---------SDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERT 177
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 46
>gi|398996366|ref|ZP_10699223.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM21]
gi|398126897|gb|EJM16318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM21]
Length = 211
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAAGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|398871356|ref|ZP_10626671.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM74]
gi|398206297|gb|EJM93064.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM74]
Length = 211
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P +AT C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVATTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L +H+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAQHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|398879706|ref|ZP_10634794.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM67]
gi|398886634|ref|ZP_10641501.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM60]
gi|398188905|gb|EJM76194.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM60]
gi|398195850|gb|EJM82877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM67]
Length = 211
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|119384010|ref|YP_915066.1| ATP-dependent Clp protease proteolytic subunit [Paracoccus
denitrificans PD1222]
gi|119373777|gb|ABL69370.1| ATP-dependent Clp protease proteolytic subunit ClpP [Paracoccus
denitrificans PD1222]
Length = 209
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +++++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMATLISAQLLFLEAENPTKDISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLL AG+ G R SLPNSR+M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPRVSTLVVGQAASMGSLLLCAGQPGQRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A E LK+++N +YVKHTG ++E++ ++
Sbjct: 143 ---------TDILIHARETEKLKRRLNEIYVKHTGRTLEEVEQA 177
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPV 45
>gi|407364028|ref|ZP_11110560.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
mandelii JR-1]
Length = 211
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAAGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|212709197|ref|ZP_03317325.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
30120]
gi|422019641|ref|ZP_16366184.1| ATP-dependent Clp protease proteolytic subunit [Providencia
alcalifaciens Dmel2]
gi|212688109|gb|EEB47637.1| hypothetical protein PROVALCAL_00230 [Providencia alcalifaciens DSM
30120]
gi|414102747|gb|EKT64337.1| ATP-dependent Clp protease proteolytic subunit [Providencia
alcalifaciens Dmel2]
Length = 206
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L +HTG SIE+I + T
Sbjct: 147 ---------TDIEIHAQEILKVKSRMNELMAQHTGKSIEEISRDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|87201067|ref|YP_498324.1| ATP-dependent Clp protease proteolytic subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|115311787|sp|Q2G3T3.1|CLPP_NOVAD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|87136748|gb|ABD27490.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Novosphingobium aromaticivorans DSM 12444]
Length = 235
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQ+ RGER++DIYSRLLRERII V G ++D ++SV++AQLLFL+SE+ K I M
Sbjct: 28 LIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEVEDHMASVIIAQLLFLESENPSKDISM 87
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIMI
Sbjct: 88 YINSPGGVVTAGLAIYDTMQYIRPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMI 147
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG A MAS
Sbjct: 148 HQPSGG-------------------------ARGMAS----------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
++ QA +I + ++K++N LYVK TG S+++I K+
Sbjct: 160 ---DIEIQAREI-------LRIRKRMNDLYVKFTGRSLDEIEKA 193
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L+P+V+EQ+ RGER++DIYSRLLRERII V G V
Sbjct: 28 LIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEV 61
>gi|398893207|ref|ZP_10646001.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM55]
gi|398184565|gb|EJM72011.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM55]
Length = 211
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|383784111|ref|YP_005468680.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
gi|383083023|dbj|BAM06550.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
ferrooxidans C2-3]
Length = 200
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/263 (41%), Positives = 148/263 (56%), Gaps = 68/263 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+E T RGER+YDIYSRLL+ERII + PIDD+++++V+AQLLFL+SE + K I++
Sbjct: 2 LIPMVVEHTSRGERSYDIYSRLLKERIIFLGTPIDDNVANLVIAQLLFLESEDASKDINI 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G IYDTMQY+ P ++T CVGQA SM + LLAAG KG R +LPN+R+MI
Sbjct: 62 YINSPGGVVTAGFAIYDTMQYIKPDVSTICVGQAASMGAFLLAAGAKGKRFALPNARVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGFQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI I A+EI+ +K +N L HTG ++++I + T Y ++
Sbjct: 133 ---------TDIAIHAKEILKMKSHLNELLAHHTGQALQRIEQDTERDY---------FL 174
Query: 285 NGLYVKHTGLSIEKIGKSTNLTE 307
+ K GL ++K+ S LTE
Sbjct: 175 SADESKDYGL-VDKVMSSHGLTE 196
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+E T RGER+YDIYSRLL+ERII + P+
Sbjct: 2 LIPMVVEHTSRGERSYDIYSRLLKERIIFLGTPID 36
>gi|239977100|sp|P0CAU1.1|CLPP_CAUCR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239977114|sp|B8GX16.2|CLPP_CAUCN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 209
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C+G A SM SLLLAAG G R SLPN+RIM+
Sbjct: 71 YINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 131 HQPSGGFR---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERT 176
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 45
>gi|90419399|ref|ZP_01227309.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
manganoxydans SI85-9A1]
gi|90336336|gb|EAS50077.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Aurantimonas
manganoxydans SI85-9A1]
Length = 210
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 137/232 (59%), Gaps = 58/232 (25%)
Query: 37 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSE 96
H + LVP+V+EQT RGERAYDI+SRLL+ER+I + GPI+DS++++V AQLLFL++E
Sbjct: 3 HPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIEDSMATLVCAQLLFLEAE 62
Query: 97 SSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156
+ KK I +YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR +
Sbjct: 63 NPKKEIALYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGHKDMRFA 122
Query: 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 216
PN+RIM+HQPSGG GQA + RH
Sbjct: 123 TPNARIMVHQPSGGFS---------------------GQASDIE-----------RH--- 147
Query: 217 NSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
A++II LK+++N +YV+HTG E + ++
Sbjct: 148 -----------------------AQDIIKLKRRLNEVYVEHTGQDYETVERT 176
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 373 HSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + LVP+V+EQT RGERAYDI+SRLL+ER+I + GP+
Sbjct: 3 HPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERVIFITGPIE 45
>gi|120554758|ref|YP_959109.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Marinobacter
aquaeolei VT8]
gi|387813879|ref|YP_005429362.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
protease [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|120324607|gb|ABM18922.1| ATP-dependent Clp protease proteolytic subunit ClpP [Marinobacter
aquaeolei VT8]
gi|381338892|emb|CCG94939.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 211
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 134/228 (58%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVPIVIEQT RGER++DIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K
Sbjct: 14 SSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVEDHMANLVVAQLLFLESENPDKD 73
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
IH+YINSPGGSV++G+ IYDTMQ+V P +AT C+GQA SM + LL+ G KG R LP+SR
Sbjct: 74 IHLYINSPGGSVSAGMSIYDTMQFVKPDVATLCIGQAASMGAFLLSGGAKGKRACLPHSR 133
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+MIHQP GG Q GQA
Sbjct: 134 VMIHQPLGGYQ---------------------GQA------------------------- 147
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ ++ +N L +HTG IE I + T
Sbjct: 148 ------------TDIEIHTREILKIRNTLNELLAEHTGQDIETIARDT 183
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVPIVIEQT RGER++DIYSRLL+ER+I ++GPV
Sbjct: 14 SSGLVPIVIEQTARGERSFDIYSRLLKERVIFLVGPVE 51
>gi|256556952|gb|ACU83574.1| ATP-dependent Clp protease subunit [uncultured bacterium
HF130_AEPn_2]
Length = 211
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|365873788|ref|ZP_09413321.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
gi|363983875|gb|EHM10082.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio velox DSM 12556]
Length = 194
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 139/239 (58%), Gaps = 58/239 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQTGRGER+YDIYSRLL++RII + IDD L+++VVAQLLFL+SE K +++
Sbjct: 4 LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLANLVVAQLLFLESEDPDKDVYL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C GQA SMA++LLAAGE+G R SLP+SRIMI
Sbjct: 64 YINSPGGVVTAGLAIYDTMQYIKCPVSTICTGQAASMAAVLLAAGERGKRISLPHSRIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 124 HQPLGGAQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283
+DI+IQA EI+ +K+ +N + HTG +E+I + T + + C +
Sbjct: 135 ---------SDIEIQAREILRVKEILNSILSNHTGQPLERIARDTDRDFFMSADEACAY 184
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 28/30 (93%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQTGRGER+YDIYSRLL++RII +
Sbjct: 4 LIPYVIEQTGRGERSYDIYSRLLKDRIIFI 33
>gi|257065888|ref|YP_003152144.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
prevotii DSM 20548]
gi|256797768|gb|ACV28423.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Anaerococcus
prevotii DSM 20548]
Length = 197
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQT RGERAYDIYSRLL++RII + G + D +S +++AQLLFL+SE K I
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM Y+ P ++T C+GQA SMA++LL++G KG R+SLP+S IMI
Sbjct: 67 YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRYSLPSSNIMI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGAQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQAE+II +K+++N + +TG S++KI K T
Sbjct: 138 ---------SDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDT 173
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP V+EQT RGERAYDIYSRLL++RII + G V
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEV 40
>gi|15965008|ref|NP_385361.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti 1021]
gi|334315798|ref|YP_004548417.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti AK83]
gi|384528967|ref|YP_005713055.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti BL225C]
gi|384536772|ref|YP_005720857.1| ATP-dependent Clp protease, proteolytic subunit [Sinorhizobium
meliloti SM11]
gi|407720199|ref|YP_006839861.1| ATP-dependent Clp protease proteolytic subunit 2 [Sinorhizobium
meliloti Rm41]
gi|418402634|ref|ZP_12976142.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti CCNWSX0020]
gi|433613029|ref|YP_007189827.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
meliloti GR4]
gi|18202306|sp|P58278.1|CLPP2_RHIME RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|15074187|emb|CAC45834.1| Probable ATP-dependent CLP protease proteolytic subunit
[Sinorhizobium meliloti 1021]
gi|333811143|gb|AEG03812.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti BL225C]
gi|334094792|gb|AEG52803.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti AK83]
gi|336033664|gb|AEH79596.1| ATP-dependent Clp protease, proteolytic subunit [Sinorhizobium
meliloti SM11]
gi|359503375|gb|EHK75929.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
meliloti CCNWSX0020]
gi|407318431|emb|CCM67035.1| ATP-dependent Clp protease proteolytic subunit 2 [Sinorhizobium
meliloti Rm41]
gi|429551219|gb|AGA06228.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Sinorhizobium
meliloti GR4]
Length = 208
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK + +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEVAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PNSRIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNSRIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHCGRTYEEVEQT 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMAT 50
>gi|388468796|ref|ZP_10143006.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
synxantha BG33R]
gi|388012376|gb|EIK73563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
synxantha BG33R]
Length = 211
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|398353146|ref|YP_006398610.1| ATP-dependent Clp protease proteolytic subunit 2 [Sinorhizobium
fredii USDA 257]
gi|390128472|gb|AFL51853.1| ATP-dependent Clp protease proteolytic subunit 2 [Sinorhizobium
fredii USDA 257]
Length = 208
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YVKH G + E++ ++
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVKHCGRTYEEVDQT 176
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMAT 50
>gi|389578265|ref|ZP_10168292.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
gi|389399900|gb|EIM62122.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfobacter
postgatei 2ac9]
Length = 208
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 132/226 (58%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+P+V+EQ+ RGERAYDIYSRLL++RII + IDD +++++VAQ+LFL+SE K I+
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRIIFLGSAIDDEVANLIVAQMLFLESEDPDKDIN 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
YINSPGG VT+G+ IYDT+QY+ P +AT C+GQA SM +LLL AG G R +LPN+RIM
Sbjct: 62 FYINSPGGVVTAGMAIYDTIQYIKPDVATVCIGQAASMGALLLTAGTAGKRFALPNARIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPMGGAQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA EI+ +K +N + KHTG +IE++ T
Sbjct: 134 ----------TDIKIQATEILRMKDVLNEILSKHTGQNIERVAADT 169
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 28/29 (96%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERII 408
PL+P+V+EQ+ RGERAYDIYSRLL++RII
Sbjct: 2 PLIPMVVEQSNRGERAYDIYSRLLKDRII 30
>gi|300715591|ref|YP_003740394.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
Eb661]
gi|299061427|emb|CAX58539.1| ATP-dependent Clp protease proteolytic subunit [Erwinia billingiae
Eb661]
Length = 215
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 24 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 83
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R++LPNSR+MI
Sbjct: 84 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRYALPNSRVMI 143
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 144 HQPLGGYQ---------------------GQA---------------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG ++E+I + T
Sbjct: 155 ---------TDIEIHAREILKVKARMNELMAEHTGKTLEEIERDT 190
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 24 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 58
>gi|284006421|emb|CBA71657.1| ATP-dependent Clp protease proteolytic subunit [Arsenophonus
nasoniae]
Length = 209
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 141/239 (58%), Gaps = 61/239 (25%)
Query: 34 TFHHSATLSRP---LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
++H++ P LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQ+
Sbjct: 4 SYHNNQDQLAPHMALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQM 63
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFL++E+ K IH+YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG
Sbjct: 64 LFLEAENPDKDIHLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGA 123
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
KG R+ LPNSR+MIHQP GG Q GQA
Sbjct: 124 KGKRYCLPNSRVMIHQPLGGFQ---------------------GQA-------------- 148
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K ++N L KHTG I+++ T
Sbjct: 149 -----------------------SDIEIHAKEILKIKSRMNELMAKHTGKKIKEVENDT 184
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Query: 370 TFHHSATLSRP---LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++H++ P LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 4 SYHNNQDQLAPHMALVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 52
>gi|334136415|ref|ZP_08509881.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
gi|333606025|gb|EGL17373.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Paenibacillus sp. HGF7]
Length = 197
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQ RGER+YDIYSRLL++RII + IDD ++++V+AQLLFLQS+ ++K IH+
Sbjct: 3 LIPMVVEQEARGERSYDIYSRLLKDRIIFIGSAIDDDVANLVIAQLLFLQSQDAEKDIHV 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQ++ P ++T CVG A SM SLLL AG G R +LPNS +MI
Sbjct: 63 YINSPGGSVTAGLGIYDTMQHIKPDVSTICVGMAASMGSLLLTAGAPGKRFALPNSEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 123 HQPLGGVR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ II K+++N +YVKHTG +KI + T
Sbjct: 134 ---------SDIKIHADWIIKTKQKLNNIYVKHTGQPYDKIDRDT 169
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/30 (66%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P+V+EQ RGER+YDIYSRLL++RII +
Sbjct: 3 LIPMVVEQEARGERSYDIYSRLLKDRIIFI 32
>gi|162148815|ref|YP_001603276.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545437|ref|YP_002277666.1| ATP-dependent Clp protease proteolytic subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787392|emb|CAP56987.1| ATP-dependent Clp protease proteolytic subunit 1 (Endopeptidase Clp
1) [Gluconacetobacter diazotrophicus PAl 5]
gi|209533114|gb|ACI53051.1| Endopeptidase Clp [Gluconacetobacter diazotrophicus PAl 5]
Length = 212
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 135/227 (59%), Gaps = 58/227 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
S LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +++VV AQLL+L+S + K
Sbjct: 10 FSSALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVAAVVSAQLLYLESVNPTK 69
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPN+
Sbjct: 70 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNA 129
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 130 RVMVHQPSGGAQ---------------------GQA------------------------ 144
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+IQA EI+ +++++N +Y HTG ++E I +
Sbjct: 145 -------------SDIEIQAREILTIRQRLNEIYETHTGQTLEDIER 178
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 10 FSSALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 47
>gi|116243127|sp|Q0VQ90.2|CLPP_ALCBS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 205
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 13 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVEDHMANLIVAQMLFLESENPDKDIHL 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AG G R +LPN+R+MI
Sbjct: 73 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGAFLLTAGAAGKRFALPNARVMI 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 133 HQPLGGFQ---------------------GQA---------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K Q+N L HTG IE++ K T
Sbjct: 144 ---------SDIEIHAKEILKIKGQLNSLLAHHTGQPIEQLEKDT 179
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 13 LVPVVIEQTARGERSFDIYSRLLKERVIFMIGQVE 47
>gi|115374875|ref|ZP_01462148.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
gi|115368093|gb|EAU67055.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Stigmatella
aurantiaca DW4/3-1]
Length = 204
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIEQT RGER+YDIYSRLL++RI+ + IDD +S+ +V+QLLFL+SE K I++Y
Sbjct: 3 IPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T C+GQA SM ++LL AG KG R+SLP+SRIMIH
Sbjct: 63 INSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 123 QPLGGVR---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ ++ ++N L VKHTG +E++ K T Y +
Sbjct: 133 --------TDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYM 174
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
+P VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 3 IPYVIEQTHRGERSYDIYSRLLKDRIVML 31
>gi|452851006|ref|YP_007492690.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
piezophilus]
gi|451894660|emb|CCH47539.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
piezophilus]
Length = 203
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 135/230 (58%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE TGR ERAYDIYSRLL++RII + IDD ++S++ AQLLFL+SE +K I+MY
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRIILLGSAIDDHVASLICAQLLFLESEDPEKEIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV+SG+ IYDTMQY+ P+AT C+GQA SM +LLL AGE GMR++LP+SRIMIH
Sbjct: 64 INSPGGSVSSGMAIYDTMQYISAPVATLCLGQAASMGALLLGAGEAGMRYALPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI I A+EI+ L+ ++N + HTG +EKI + T Y +
Sbjct: 134 --------SDIHIHAKEILRLRDELNEIMAGHTGQKLEKIREDTERDYFM 175
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
+P+VIE TGR ERAYDIYSRLL++RII +
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRIILL 32
>gi|417558939|ref|ZP_12209898.1| Protease subunit of ATP-dependent Clp protease [Xylella fastidiosa
EB92.1]
gi|338178521|gb|EGO81507.1| Protease subunit of ATP-dependent Clp protease [Xylella fastidiosa
EB92.1]
Length = 196
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 134/222 (60%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ER+I ++GPIDD +++++VAQLLFL++E+ +K I++YIN
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDYMANLIVAQLLFLEAENPEKDINIYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+G+ IYDTMQY+ P ++T CVGQA SM +LLLA+G G R++LPNSR+MIHQP
Sbjct: 61 SPGGVVTAGMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ L+ ++N + KHTG S+E I T
Sbjct: 129 ------TDIDIHAREILALRARLNEILAKHTGQSLETIAHDT 164
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+V+EQT RGERAYDIYSRLL+ER+I ++GP+ Y
Sbjct: 1 MVVEQTSRGERAYDIYSRLLKERLIFLVGPIDDY 34
>gi|167646810|ref|YP_001684473.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter sp.
K31]
gi|189082451|sp|B0SZQ2.1|CLPP_CAUSK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|167349240|gb|ABZ71975.1| Endopeptidase Clp [Caulobacter sp. K31]
Length = 208
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C+G A SM SLLL AG G R +LPN+RIM+
Sbjct: 71 YINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLQAGAPGHRIALPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 131 HQPSGGFR---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKHTG + E++ K+
Sbjct: 142 ---------SDIERHAEDIIKTKRRLNEIYVKHTGRTYEEVEKT 176
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 11 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 45
>gi|229591362|ref|YP_002873481.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens SBW25]
gi|259585962|sp|C3JYK0.1|CLPP_PSEFS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|229363228|emb|CAY50311.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
fluorescens SBW25]
Length = 211
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAEGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|116747551|ref|YP_844238.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
gi|166214718|sp|A0LEF1.1|CLPP_SYNFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|116696615|gb|ABK15803.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Syntrophobacter fumaroxidans MPOB]
Length = 202
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQ+ RGERA+DIYSRLLR+RII + I D +++V++AQLLFL+SE K IH
Sbjct: 3 LIPIVVEQSSRGERAFDIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHF 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQ++ P ++T C+GQA SMA++LLAAG KG R++LP+ RIM+
Sbjct: 63 YINSPGGLVTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIML 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPMGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD++IQA+EI+ L++++N + V+HTG +E+I + T
Sbjct: 134 ---------TDVEIQAKEILKLREELNDILVRHTGRPVEQIQRDT 169
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
L+PIV+EQ+ RGERA+DIYSRLLR+RII
Sbjct: 3 LIPIVVEQSSRGERAFDIYSRLLRDRII 30
>gi|310820094|ref|YP_003952452.1| ATP-dependent CLP protease proteolytic subunit 1 [Stigmatella
aurantiaca DW4/3-1]
gi|309393166|gb|ADO70625.1| ATP-dependent Clp protease proteolytic subunit 1 [Stigmatella
aurantiaca DW4/3-1]
Length = 207
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIEQT RGER+YDIYSRLL++RI+ + IDD +S+ +V+QLLFL+SE K I++Y
Sbjct: 6 IPYVIEQTHRGERSYDIYSRLLKDRIVMLGTEIDDDVSNAIVSQLLFLESEDPDKDINLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTMQYV P++T C+GQA SM ++LL AG KG R+SLP+SRIMIH
Sbjct: 66 INSPGGSVTAGLAIYDTMQYVKCPVSTICIGQAASMGAVLLLAGAKGKRYSLPSSRIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGV+ GQA
Sbjct: 126 QPLGGVR---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ ++ ++N L VKHTG +E++ K T Y +
Sbjct: 136 --------TDIEIQAKEILRMRAKLNDLIVKHTGQPLERVEKDTDRDYYM 177
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
+P VIEQT RGER+YDIYSRLL++RI+ +
Sbjct: 6 IPYVIEQTHRGERSYDIYSRLLKDRIVML 34
>gi|157273309|gb|ABV27208.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum]
Length = 199
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 133/221 (60%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQTGRGERAYDIYSRLL++ II + PIDD+++S+VVAQLLFL+SE ++ I +
Sbjct: 8 LIPMVIEQTGRGERAYDIYSRLLKDNIIFISTPIDDTVASLVVAQLLFLESEDPERDISI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ+V P I T+CVGQ SM +LLLAAG KG R++LP+SRI+I
Sbjct: 68 YINSPGGSVTAGMAIYDTMQFVKPDIVTFCVGQCASMGALLLAAGTKGKRYALPHSRILI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 128 HQPSGGAQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI +++ + + KHTG E I
Sbjct: 139 ---------TDILIQAEEIKRIRELTSTILAKHTGKPFEVI 170
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIEQTGRGERAYDIYSRLL++ II + P+
Sbjct: 8 LIPMVIEQTGRGERAYDIYSRLLKDNIIFISTPID 42
>gi|359790768|ref|ZP_09293649.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359253256|gb|EHK56411.1| ATP-dependent Clp protease proteolytic subunit [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 210
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 136/234 (58%), Gaps = 58/234 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H + LVP+V+EQT RGERAYDI+SRLL+ERII + GP++D ++++V AQLLFL+
Sbjct: 1 MRHPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVEDGMATLVCAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I +YINSPGG VTSG+ IYDTMQ++ P ++T C+GQA SM SLLL AG K MR
Sbjct: 61 AENPKKEISLYINSPGGVVTSGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLCAGHKDMR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+ PN+RIM+HQPSGG GQA + RH
Sbjct: 121 FATPNARIMVHQPSGGFS---------------------GQASDIE-----------RH- 147
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
A++II LK+++N +YVKHTG E I ++
Sbjct: 148 -------------------------AQDIIKLKRRLNEVYVKHTGKDYETIERT 176
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 1 MRHPVETAMNLVPMVVEQTNRGERAYDIFSRLLKERIIFITGPVE 45
>gi|221234978|ref|YP_002517414.1| ATP-dependent Clp protease proteolytic subunit [Caulobacter
crescentus NA1000]
gi|220964150|gb|ACL95506.1| ATP-dependent endopeptidase clp, proteolytic subunit ClpP
[Caulobacter crescentus NA1000]
Length = 213
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DI+SRLL+ERII + GP++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 15 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPKKEIAM 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P++T C+G A SM SLLLAAG G R SLPN+RIM+
Sbjct: 75 YINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPNARIMV 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 135 HQPSGGFR---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ AE+II K+++N +YVKH G + E++ ++
Sbjct: 146 ---------SDIERHAEDIIKTKRRLNEIYVKHCGRTYEEVERT 180
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DI+SRLL+ERII + GPV
Sbjct: 15 LVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVE 49
>gi|417001829|ref|ZP_11941334.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerococcus prevotii ACS-065-V-Col13]
gi|325479715|gb|EGC82805.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 197
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQT RGERAYDIYSRLL++RII + G + D +S +++AQLLFL+SE K I
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEISDIIIAQLLFLESEDPDKDIQF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM Y+ P ++T C+GQA SMA++LL++G KG R SLP+S IMI
Sbjct: 67 YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMAAVLLSSGAKGKRFSLPSSNIMI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 127 HQPSGGAQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQAE+II +K+++N + +TG S++KI K T
Sbjct: 138 ---------SDIVIQAEQIIKIKERLNKILSDNTGQSLKKIEKDT 173
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP V+EQT RGERAYDIYSRLL++RII + G V
Sbjct: 7 LVPTVVEQTNRGERAYDIYSRLLKDRIIFLSGEV 40
>gi|268592036|ref|ZP_06126257.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
rettgeri DSM 1131]
gi|422010033|ref|ZP_16357015.1| ATP-dependent Clp protease proteolytic subunit [Providencia
rettgeri Dmel1]
gi|291312428|gb|EFE52881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Providencia
rettgeri DSM 1131]
gi|414092206|gb|EKT53885.1| ATP-dependent Clp protease proteolytic subunit [Providencia
rettgeri Dmel1]
Length = 206
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K ++N L HTG SIE+I + T
Sbjct: 147 ---------SDIEIHAQEILKVKSRMNELMALHTGKSIEEITRDT 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|71907348|ref|YP_284935.1| ATP-dependent Clp protease proteolytic subunit [Dechloromonas
aromatica RCB]
gi|110816458|sp|Q47FB6.1|CLPP_DECAR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71846969|gb|AAZ46465.1| ATP-dependent Clp protease proteolytic subunit ClpP [Dechloromonas
aromatica RCB]
Length = 209
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GP++D +++VVAQLLFL++E+ K I+
Sbjct: 16 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVNDVTANLVVAQLLFLEAENPDKDIYF 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R +LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N + +H+G +E+I K T
Sbjct: 147 ---------SDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDT 182
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++GPV+
Sbjct: 16 LVPMVVEQSGRGERAYDIYSRLLKERVIFLVGPVN 50
>gi|254480762|ref|ZP_05094009.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
gi|214039345|gb|EEB80005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [marine gamma
proteobacterium HTCC2148]
Length = 213
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I V+G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 18 LVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVEDHMANLIVAQLLFLESENPDKDIHL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM + LL G KG R+ LPN+R MI
Sbjct: 78 YINSPGGSVTAGLSIYDTMQFIKPDVSTMCLGQAASMGAFLLCGGAKGKRYCLPNARTMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 138 HQPSGGAQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ +++++N L +HTG +E I + T
Sbjct: 149 ---------TDIEIQAKEILIIREKLNQLMAEHTGQPLEVIERDT 184
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I V+G V
Sbjct: 18 LVPMVVEQTSRGERSYDIYSRLLKERVIFVVGQVE 52
>gi|163751869|ref|ZP_02159083.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
KT99]
gi|161328219|gb|EDP99383.1| ATP-dependent Clp protease proteolytic subunit [Shewanella benthica
KT99]
Length = 203
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ERII ++GP+++ ++++VVAQLLFL+SES K I +
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESPDKDIFL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G G RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG S+E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKDKLNQMLAEHTGQSLEVIERDT 178
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ERII ++GPV
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVE 46
>gi|304437034|ref|ZP_07396997.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
gi|304369985|gb|EFM23647.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
oral taxon 149 str. 67H29BP]
Length = 203
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 108/127 (85%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E +GRGERAYDIYSRLL+ERII + GPIDDS+++V+VAQ+LFL+SE K IH+Y
Sbjct: 5 VPMVVETSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T CVGQA SM S+LL AG KG R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E +GRGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVETSGRGERAYDIYSRLLKERIIFLGGPID 38
>gi|399520089|ref|ZP_10760870.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111981|emb|CCH37429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 213
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ ++T C+GQACSM + LLA G KG R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L +HTG S+E I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNELLAQHTGQSLETIERDT 185
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|451822957|ref|YP_007459231.1| ATP-dependent Clp, protease subunit [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775757|gb|AGF46798.1| ATP-dependent Clp, protease subunit [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 215
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E +GRGERAYDIYSRLL+ERII ++GPIDD+++++VVAQ+LFL+SE K I++Y
Sbjct: 26 VPMVVESSGRGERAYDIYSRLLKERIIFLVGPIDDNIANLVVAQMLFLESEDPNKDINIY 85
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGS+ +G+ I+DTM +V P ++T C+G A SM + LL+AG+KG R SLPNS IMIH
Sbjct: 86 INSPGGSIYAGMAIFDTMMFVKPDVSTICIGLAASMGAFLLSAGKKGKRFSLPNSSIMIH 145
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG GQA
Sbjct: 146 QPSGGAN---------------------GQA----------------------------- 155
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI A+EI+ LK ++N + ++TG SIE+I + T
Sbjct: 156 --------TDIQIHAKEILRLKNRLNFIMSENTGKSIEEISEDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E +GRGERAYDIYSRLL+ERII ++GP+
Sbjct: 26 VPMVVESSGRGERAYDIYSRLLKERIIFLVGPID 59
>gi|197284027|ref|YP_002149899.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
HI4320]
gi|226329068|ref|ZP_03804586.1| hypothetical protein PROPEN_02971 [Proteus penneri ATCC 35198]
gi|227358102|ref|ZP_03842444.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
ATCC 29906]
gi|425066920|ref|ZP_18470036.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
WGLW6]
gi|425073647|ref|ZP_18476753.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
WGLW4]
gi|226706465|sp|B4EU53.1|CLPP_PROMH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|194681514|emb|CAR40393.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
HI4320]
gi|225202254|gb|EEG84608.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Proteus
penneri ATCC 35198]
gi|227161837|gb|EEI46869.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
ATCC 29906]
gi|404594918|gb|EKA95473.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
WGLW4]
gi|404601591|gb|EKB01983.1| ATP-dependent Clp protease proteolytic subunit [Proteus mirabilis
WGLW6]
Length = 207
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDINL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQY+ ++T C+GQACSM + LL+AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQYIKADVSTICMGQACSMGAFLLSAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI A+EI+ +K ++N L +HTG SIE+I + T
Sbjct: 147 ---------TDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDT 182
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|390603859|gb|EIN13250.1| hypothetical protein PUNSTDRAFT_48303 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 253
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 95/146 (65%), Positives = 114/146 (78%), Gaps = 9/146 (6%)
Query: 33 KTFHH-------SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSV 85
+ FHH S S LVPIVIEQTGRGER+YDI+SRLLRER++ + GPI DS S++
Sbjct: 30 RQFHHLSQRTCTSEIRSSGLVPIVIEQTGRGERSYDIFSRLLRERVVMLHGPIHDSDSAL 89
Query: 86 VVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145
+V+QLLFL++E S KPIH+YINSPGGSVT+G+ IYDT YV I T+C+GQACSM SLL
Sbjct: 90 IVSQLLFLEAEDSSKPIHLYINSPGGSVTAGMAIYDT--YVSSSIHTYCIGQACSMGSLL 147
Query: 146 LAAGEKGMRHSLPNSRIMIHQPSGGV 171
L AGEKG RH LP++ IMIHQPSGG
Sbjct: 148 LVAGEKGKRHCLPHASIMIHQPSGGA 173
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 7/53 (13%)
Query: 369 KTFHH-------SATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ FHH S S LVPIVIEQTGRGER+YDI+SRLLRER++ + GP+
Sbjct: 30 RQFHHLSQRTCTSEIRSSGLVPIVIEQTGRGERSYDIFSRLLRERVVMLHGPI 82
>gi|381169038|ref|ZP_09878213.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Phaeospirillum molischianum DSM 120]
gi|380681827|emb|CCG43035.1| ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
[Phaeospirillum molischianum DSM 120]
Length = 214
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 130/223 (58%), Gaps = 58/223 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G + D ++ ++ AQ LFL+SE+ K I
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQVHDEVACLICAQFLFLESENPTKDIAF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T C+GQA SM SLLL AG KG R SLPNSRIM+
Sbjct: 74 YINSPGGVVTSGLAIYDTMQYIRPAVSTVCIGQAASMGSLLLTAGAKGKRLSLPNSRIMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
TDI+IQA EI+ L+ ++N +YV HTG +E I +
Sbjct: 145 ---------TDIEIQAREILALRARLNNIYVDHTGQPLEVIER 178
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G V
Sbjct: 14 LVPMVVEQTNRGERSYDIYSRLLKERIVFLTGQV 47
>gi|296112317|ref|YP_003626255.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
gi|295920011|gb|ADG60362.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BBH18]
Length = 217
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
T + LVP+VIEQ+GRGER++DI+SRLLRER+I + G ++D++++++VAQLLFL++++ +
Sbjct: 18 TPNNALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPE 77
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K IH+YINSPGG VT+G+ IYDTM ++ P ++T C+GQA SM S LL+AGEKG R++L N
Sbjct: 78 KDIHLYINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALAN 137
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
SR+MIHQP GG + GQA
Sbjct: 138 SRVMIHQPLGGFR---------------------GQA----------------------- 153
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EII LK ++N L +HTG IEK+ + T
Sbjct: 154 --------------SDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDT 189
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
T + LVP+VIEQ+GRGER++DI+SRLLRER+I + G V
Sbjct: 18 TPNNALVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVE 57
>gi|424922478|ref|ZP_18345839.1| ClpP [Pseudomonas fluorescens R124]
gi|404303638|gb|EJZ57600.1| ClpP [Pseudomonas fluorescens R124]
Length = 211
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|226939792|ref|YP_002794865.1| Protease subunit of ATP-dependent Clp protease [Laribacter
hongkongensis HLHK9]
gi|254763792|sp|C1D539.1|CLPP_LARHH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226714718|gb|ACO73856.1| Protease subunit of ATP-dependent Clp protease [Laribacter
hongkongensis HLHK9]
Length = 212
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GP+ D +++VVAQ+LFL+SE+ K IH+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERIVFMVGPVTDETANLVVAQMLFLESENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM ++ P ++T C+GQA SM + LL+AG KG R +LPNSR+MI
Sbjct: 79 YINSPGGSVTAGLSIYDTMNFIKPSVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A EI+ LK+++N L H G +E + + T
Sbjct: 150 ---------SDFEIHAREILTLKRKLNELMAAHCGRPLEDLERDT 185
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GPV+
Sbjct: 19 LVPMVVEQSGRGERAYDIYSRLLKERIVFMVGPVT 53
>gi|126727090|ref|ZP_01742927.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Rhodobacterales bacterium HTCC2150]
gi|126703518|gb|EBA02614.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Rhodobacterales bacterium HTCC2150]
Length = 209
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 134/231 (58%), Gaps = 58/231 (25%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F+ ++ ++P V E T RG YDI+SRLL+ERII V GP+ D +++ +VAQLLFL+
Sbjct: 2 FNPLGNITDFVIPTVEETTSRGSIRYDIFSRLLKERIIFVSGPVHDEMATTIVAQLLFLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+++ K I MYINSPGG VTSGL IYDTMQY+ P ++T C+GQA SM SLLLAAGE GMR
Sbjct: 62 ADNPTKEIAMYINSPGGVVTSGLSIYDTMQYIKPKVSTVCIGQAASMGSLLLAAGEPGMR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+SLPNSRIM+HQPSGG Q GQA
Sbjct: 122 YSLPNSRIMVHQPSGGYQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A E LK ++NG+YVKHTG +++K+
Sbjct: 143 -------------------TDIMIHAAETQKLKDRLNGIYVKHTGQTMKKV 174
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F+ ++ ++P V E T RG YDI+SRLL+ERII V GPV
Sbjct: 2 FNPLGNITDFVIPTVEETTSRGSIRYDIFSRLLKERIIFVSGPV 45
>gi|350564171|ref|ZP_08932990.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalimicrobium aerophilum AL3]
gi|349778171|gb|EGZ32530.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalimicrobium aerophilum AL3]
Length = 201
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 111/128 (86%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ER+I ++GP++D +++++VAQ+LFL+SE+ +K IH+
Sbjct: 10 LVPMVVEQTSRGERAFDIYSRLLKERVIFLVGPVEDHMANLIVAQMLFLESENPEKDIHL 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTM+++ P ++T C+GQA SM S LLAAG KG R +LPNSR+MI
Sbjct: 70 YINSPGGSVTAGMAIYDTMRFIKPDVSTMCLGQAASMGSFLLAAGAKGKRFALPNSRVMI 129
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 130 HQPLGGFQ 137
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 75/106 (70%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ IYDTM+++ P ++T C+GQA SM S LLAAG KG R +LPNSR+MIH
Sbjct: 71 INSPGGSVTAGMAIYDTMRFIKPDVSTMCLGQAASMGSFLLAAGAKGKRFALPNSRVMIH 130
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
QP GG QGQA+D +I A EI+ +K ++N ++TG +E I + T
Sbjct: 131 QPLGGFQGQASDFEIHAREILFIKDKLNKALSENTGQPLEVIERDT 176
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERA+DIYSRLL+ER+I ++GPV
Sbjct: 10 LVPMVVEQTSRGERAFDIYSRLLKERVIFLVGPVE 44
>gi|336311088|ref|ZP_08566055.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
HN-41]
gi|335865304|gb|EGM70330.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
HN-41]
Length = 202
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EII +K ++N + +HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEIIGIKNKLNLMLAEHTGQPLEVIERDT 177
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVE 45
>gi|70731346|ref|YP_261087.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
protegens Pf-5]
gi|110816462|sp|Q4K9J6.1|CLPP_PSEF5 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|68345645|gb|AAY93251.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
protegens Pf-5]
Length = 211
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|77459919|ref|YP_349426.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens Pf0-1]
gi|398849723|ref|ZP_10606452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM80]
gi|398966271|ref|ZP_10681430.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM30]
gi|398974167|ref|ZP_10684904.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM25]
gi|92087005|sp|Q3K9W9.1|CLPP_PSEPF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77383922|gb|ABA75435.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pseudomonas
fluorescens Pf0-1]
gi|398142051|gb|EJM30956.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM25]
gi|398146239|gb|EJM34995.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM30]
gi|398250438|gb|EJN35758.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM80]
Length = 211
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|254294162|ref|YP_003060185.1| endopeptidase Clp [Hirschia baltica ATCC 49814]
gi|254042693|gb|ACT59488.1| Endopeptidase Clp [Hirschia baltica ATCC 49814]
Length = 206
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 109/136 (80%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H + LVP+V+EQ+ RGERAYDI+SRLL+ERII V GPI+D +++++ AQLLFL+
Sbjct: 1 MHDPIETAMNLVPMVVEQSSRGERAYDIFSRLLKERIIFVTGPIEDGMATLITAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SE+ KK I MYINSPGG V+SGL IYDTMQY+ P++T C+G A SM SLLLAAGEK MR
Sbjct: 61 SENPKKEISMYINSPGGVVSSGLAIYDTMQYISAPVSTACIGMAASMGSLLLAAGEKDMR 120
Query: 155 HSLPNSRIMIHQPSGG 170
+ PN+RIM+HQPSGG
Sbjct: 121 FATPNARIMVHQPSGG 136
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
H + LVP+V+EQ+ RGERAYDI+SRLL+ERII V GP+
Sbjct: 1 MHDPIETAMNLVPMVVEQSSRGERAYDIFSRLLKERIIFVTGPI 44
>gi|409401838|ref|ZP_11251492.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
[Acidocella sp. MX-AZ02]
gi|409129475|gb|EKM99326.1| ATP-dependent endopeptidase Clp proteolytic subunit clpP
[Acidocella sp. MX-AZ02]
Length = 222
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 140/248 (56%), Gaps = 59/248 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G ++D +SS++ AQ LFL+SE+ K I
Sbjct: 14 LVPMVVEQTARGERSYDIYSRLLKERIVFLTGQVNDVVSSLLCAQFLFLESENPNKEISF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V+SGL IYDTMQY+ P++T C+GQA SM SLLL AG KG R +LPN+R+M+
Sbjct: 74 YINSPGGVVSSGLAIYDTMQYIRSPVSTVCLGQAASMGSLLLCAGAKGKRFALPNARVMV 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI-GKSTVCFYVLHDPYICFW 283
TDI+IQA EI+ L+ ++N +YV HTG +E I K Y+ D F
Sbjct: 145 ---------TDIEIQAREILKLRSKLNQIYVDHTGQPLEAIEAKLERDTYMSADEAKDFG 195
Query: 284 INGLYVKH 291
I VK+
Sbjct: 196 IVDEVVKY 203
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G V+
Sbjct: 14 LVPMVVEQTARGERSYDIYSRLLKERIVFLTGQVN 48
>gi|407789641|ref|ZP_11136741.1| ATP-dependent Clp protease proteolytic subunit [Gallaecimonas
xiamenensis 3-C-1]
gi|407206301|gb|EKE76259.1| ATP-dependent Clp protease proteolytic subunit [Gallaecimonas
xiamenensis 3-C-1]
Length = 203
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQLLFL++E+ +K IH+
Sbjct: 13 LVPMVIEQTARGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLEAENPEKDIHL 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ ++T C+GQA SM + LLA G KG RH LPN+R+MI
Sbjct: 73 YINSPGGSVTAGMAIYDTMQFIKADVSTLCIGQAASMGAFLLAGGAKGKRHCLPNARVMI 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 133 HQPLGGFQ---------------------GQA---------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ +K ++N L HTG S+E I + T
Sbjct: 144 ---------SDIEIHAREILFIKDRLNRLLADHTGQSLETIAQDT 179
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 13 LVPMVIEQTARGERSFDIYSRLLKERVIFLTGQVE 47
>gi|332981496|ref|YP_004462937.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
australiensis 50-1 BON]
gi|332699174|gb|AEE96115.1| ATP-dependent Clp protease proteolytic subunit ClpP [Mahella
australiensis 50-1 BON]
Length = 194
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQ+ RGER+YDIYSRLL+ERI+ + G +DD+ +S+VVAQ+LFL+SE K IH+
Sbjct: 3 LVPIVVEQSSRGERSYDIYSRLLKERIVFLDGEVDDATASLVVAQMLFLESEDPDKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G IYDTMQY+ P ++T C+G A SM + LLAAG KG R++LPNS I+I
Sbjct: 63 YINSPGGSVTAGFAIYDTMQYIKPDVSTICIGMAASMGAFLLAAGAKGKRYALPNSEILI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPMGGAR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I AE+I+ +K+++N + + TG EKI K T
Sbjct: 134 ---------TDIMIHAEQIVRIKRRLNEILSERTGQPYEKIEKDT 169
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQ+ RGER+YDIYSRLL+ERI+ + G V
Sbjct: 3 LVPIVVEQSSRGERSYDIYSRLLKERIVFLDGEVD 37
>gi|398938375|ref|ZP_10667778.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM41(2012)]
gi|398165923|gb|EJM54033.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM41(2012)]
Length = 211
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAAGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAKHSGHTLEEIERDT 185
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|410087016|ref|ZP_11283721.1| ATP-dependent Clp protease proteolytic subunit [Morganella morganii
SC01]
gi|455740393|ref|YP_007506659.1| ATP-dependent Clp protease proteolytic subunit [Morganella morganii
subsp. morganii KT]
gi|409766245|gb|EKN50339.1| ATP-dependent Clp protease proteolytic subunit [Morganella morganii
SC01]
gi|455421956|gb|AGG32286.1| ATP-dependent Clp protease proteolytic subunit [Morganella morganii
subsp. morganii KT]
Length = 206
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL++RII + G ++D +++++VAQLLFL++E+ +K I +
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKDRIIFLTGQVEDHMANLIVAQLLFLEAENPEKDISL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T CVGQACSM S LLAAG G R+ LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPQVSTICVGQACSMGSFLLAAGAPGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAQEILKVKARMNDLLAHHTGKSVEEIQRDT 182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL++RII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKDRIIFLTGQVE 50
>gi|59711403|ref|YP_204179.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
ES114]
gi|197335304|ref|YP_002155557.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
MJ11]
gi|423685525|ref|ZP_17660333.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
SR5]
gi|67460143|sp|Q5E6Q5.1|CLPP_VIBF1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706555|sp|B5FBZ8.1|CLPP_VIBFM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|59479504|gb|AAW85291.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Vibrio fischeri ES114]
gi|197316794|gb|ACH66241.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
fischeri MJ11]
gi|371495437|gb|EHN71033.1| ATP-dependent Clp protease proteolytic subunit [Vibrio fischeri
SR5]
Length = 207
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +KK++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKKKLNTLLAEHTGQPLEVIEQDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|83858431|ref|ZP_00951953.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis sp.
HTCC2633]
gi|83853254|gb|EAP91106.1| ATP-dependent Clp protease, proteolytic subunit [Oceanicaulis sp.
HTCC2633]
Length = 207
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ERI+ V GPI+D ++S++VAQLLFL+SE+ K I M
Sbjct: 11 LVPMVVEQSARGERAYDIYSRLLKERIVFVTGPIEDHMASLMVAQLLFLESENPNKEIAM 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQY+ P+AT CVG A SM SLLL AG+KGMR + PN+RIM+
Sbjct: 71 YINSPGGSVSAGLAIYDTMQYISCPVATACVGMAASMGSLLLTAGDKGMRFATPNARIML 130
Query: 165 HQPSGGVQ 172
HQPSGG +
Sbjct: 131 HQPSGGFR 138
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGERAYDIYSRLL+ERI+ V GP+
Sbjct: 11 LVPMVVEQSARGERAYDIYSRLLKERIVFVTGPIE 45
>gi|398985563|ref|ZP_10691098.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM24]
gi|399015406|ref|ZP_10717679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM16]
gi|398108657|gb|EJL98610.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM16]
gi|398153942|gb|EJM42433.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM24]
Length = 225
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 33 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 92
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R LPNSR+MI
Sbjct: 93 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMI 152
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 153 HQPLGGFQ---------------------GQA---------------------------- 163
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 164 ---------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 199
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 33 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 69
>gi|308050308|ref|YP_003913874.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
gi|307632498|gb|ADN76800.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ferrimonas
balearica DSM 9799]
Length = 207
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT +GER+YDIYSRLL+ER+I + GP++D ++++VVAQLLFL+SE+ K I++
Sbjct: 12 LIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVEDHMANLVVAQLLFLESENPDKDIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G KG RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFIKPDVSTVCMGQAASMGAFLLAGGAKGKRHVLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N L +HTG +E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKHKLNLLLAEHTGQPMEVIERDT 178
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT +GER+YDIYSRLL+ER+I + GPV
Sbjct: 12 LIPMVVEQTAKGERSYDIYSRLLKERVIFLTGPVE 46
>gi|153871192|ref|ZP_02000426.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
gi|152072341|gb|EDN69573.1| Peptidase S14, ClpP [Beggiatoa sp. PS]
Length = 228
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 139/240 (57%), Gaps = 58/240 (24%)
Query: 30 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQ 89
H+ + LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++VVAQ
Sbjct: 7 HMNNPYQSDERAVGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYTANLVVAQ 66
Query: 90 LLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 149
LLFL+SE+ +K IH+YINSPGGSV++GL IYDTMQ++ P ++T C+GQA SM +LLL+ G
Sbjct: 67 LLFLESENPEKDIHLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCIGQAASMGALLLSGG 126
Query: 150 EKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209
R+ LP+SRIMIHQP GG Q GQA
Sbjct: 127 ADKKRYCLPHSRIMIHQPLGGFQ---------------------GQA------------- 152
Query: 210 GMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ +++++N + KH+G +EKI K T
Sbjct: 153 ------------------------TDIDIHAREILKVRERLNEILAKHSGQPLEKIQKDT 188
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 366 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
H+ + LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 7 HMNNPYQSDERAVGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 58
>gi|293392545|ref|ZP_06636865.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
DSM 4582]
gi|291424947|gb|EFE98156.1| ATP-dependent Clp protease proteolytic subunit [Serratia odorifera
DSM 4582]
Length = 207
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAQHTGQSLEQIDRDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|238919011|ref|YP_002932525.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
[Edwardsiella ictaluri 93-146]
gi|259585951|sp|C5BCJ6.1|CLPP_EDWI9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|238868579|gb|ACR68290.1| ATP-dependent Clp protease, proteolytic subunit ClpP, putative
[Edwardsiella ictaluri 93-146]
Length = 206
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG +G R LPNSR+MI
Sbjct: 75 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 135 HQPLGGFQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+++K ++N L KH+G IE I + T
Sbjct: 146 ---------TDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDT 181
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 49
>gi|398919614|ref|ZP_10658869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM49]
gi|398169636|gb|EJM57614.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM49]
Length = 211
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P +AT C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVATTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L H+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAMHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|334143754|ref|YP_004536910.1| ATP-dependent Clp protease proteolytic subunit [Thioalkalimicrobium
cyclicum ALM1]
gi|333964665|gb|AEG31431.1| ATP-dependent Clp protease proteolytic subunit [Thioalkalimicrobium
cyclicum ALM1]
Length = 201
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 113/134 (84%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
+ + LVP+V+EQT RGERA+DIYSRLL+ER+I ++GP++D +++++VAQ+LFL+SE+
Sbjct: 4 SNIMNALVPMVVEQTSRGERAFDIYSRLLKERVIFLVGPVEDHMANLIVAQMLFLESENP 63
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
+K IH+YINSPGGSVT+G+ IYDTM+++ P ++T C+GQA SM S LLAAG KG R +LP
Sbjct: 64 EKDIHLYINSPGGSVTAGMAIYDTMRFIKPDVSTMCLGQAASMGSFLLAAGAKGKRFALP 123
Query: 159 NSRIMIHQPSGGVQ 172
NSR+MIHQP GG Q
Sbjct: 124 NSRVMIHQPLGGFQ 137
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 75/106 (70%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ IYDTM+++ P ++T C+GQA SM S LLAAG KG R +LPNSR+MIH
Sbjct: 71 INSPGGSVTAGMAIYDTMRFIKPDVSTMCLGQAASMGSFLLAAGAKGKRFALPNSRVMIH 130
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
QP GG QGQA+D +I A EI+ +K ++N ++TG IE I + T
Sbjct: 131 QPLGGFQGQASDFEIHAREILYIKDKLNKALSENTGQPIEVIEQDT 176
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 34/41 (82%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ + LVP+V+EQT RGERA+DIYSRLL+ER+I ++GPV
Sbjct: 4 SNIMNALVPMVVEQTSRGERAFDIYSRLLKERVIFLVGPVE 44
>gi|427405940|ref|ZP_18896145.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
gi|425708781|gb|EKU71820.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas sp.
F0473]
Length = 206
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 108/127 (85%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDD++++VV+AQ+LFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDNVANVVIAQMLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL +YDTMQY+ P ++T C+GQA SMAS+LLAAG G R++LP +RIMIH
Sbjct: 65 INSPGGVVTAGLAMYDTMQYIKPDVSTICIGQAASMASILLAAGAPGKRYALPQARIMIH 124
Query: 166 QPSGGVQ 172
QPSGG Q
Sbjct: 125 QPSGGAQ 131
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|114330232|ref|YP_746454.1| ATP-dependent Clp protease proteolytic subunit [Nitrosomonas
eutropha C91]
gi|122314709|sp|Q0AJI2.1|CLPP_NITEC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114307246|gb|ABI58489.1| ATP-dependent Clp protease proteolytic subunit ClpP [Nitrosomonas
eutropha C91]
Length = 214
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE +GRGERAYDIYSRLLRERII ++GP+ ++ +++V+AQLLFL+SE+S+K I +
Sbjct: 19 LIPMVIESSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDISL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL +YDTMQ++ P ++T C+GQA SM +LLL AG KG R+ LPNSR+MI
Sbjct: 79 YINSPGGLVTAGLAVYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK ++N + KHT +I I K T
Sbjct: 150 ---------SDIEIHAKEILALKGRLNEILAKHTSQTIRTIEKDT 185
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE +GRGERAYDIYSRLLRERII ++GPV+
Sbjct: 19 LIPMVIESSGRGERAYDIYSRLLRERIIFLVGPVT 53
>gi|153839648|ref|ZP_01992315.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ3810]
gi|260902813|ref|ZP_05911208.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ4037]
gi|417320363|ref|ZP_12106909.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus 10329]
gi|433657174|ref|YP_007274553.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus BB22OP]
gi|149746838|gb|EDM57826.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ3810]
gi|308108649|gb|EFO46189.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AQ4037]
gi|328473326|gb|EGF44174.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus 10329]
gi|432507862|gb|AGB09379.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus BB22OP]
Length = 208
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|258514515|ref|YP_003190737.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum acetoxidans DSM 771]
gi|257778220|gb|ACV62114.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum acetoxidans DSM 771]
Length = 194
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL++RII + GPI+D +++++AQLLFL++E +K IH+
Sbjct: 4 LVPIVVEQTNRGERSYDIYSRLLKDRIIFIGGPIEDYTANLIIAQLLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ PP++T C+GQA SM S LLAAG G R +LP +RIMI
Sbjct: 64 YINSPGGVVTAGMAIYDTMQYIKPPVSTICLGQAASMGSFLLAAGAPGKRFALPYARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG+Q GQA
Sbjct: 124 HQPSGGMQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ +K+ +N L KHT ++KI + +
Sbjct: 135 ---------TDIGIHAKEILRMKEILNKLLSKHTKQPLDKITRDS 170
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVPIV+EQT RGER+YDIYSRLL++RII + GP+ Y
Sbjct: 4 LVPIVVEQTNRGERSYDIYSRLLKDRIIFIGGPIEDY 40
>gi|441506114|ref|ZP_20988091.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
AK15]
gi|441426253|gb|ELR63738.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium sp.
AK15]
Length = 207
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G +G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAQGKRYCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E + + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVVERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|312373461|gb|EFR21200.1| hypothetical protein AND_17405 [Anopheles darlingi]
Length = 185
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/189 (55%), Positives = 115/189 (60%), Gaps = 58/189 (30%)
Query: 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWC 134
MGP+ D LSS++VAQLLFLQSE+ KPIHMYINSPGGSVT+GL IYDTMQYV PP+ATWC
Sbjct: 1 MGPVHDDLSSLIVAQLLFLQSENGTKPIHMYINSPGGSVTAGLAIYDTMQYVKPPVATWC 60
Query: 135 VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVG 194
VGQACSM SLLLAAG GMRHSLPN+RIMIHQPSGG Q G
Sbjct: 61 VGQACSMGSLLLAAGAPGMRHSLPNARIMIHQPSGGAQ---------------------G 99
Query: 195 QACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLY 254
QA TDIQIQAEEI+ LKKQ+ +Y
Sbjct: 100 QA-------------------------------------TDIQIQAEEILKLKKQLTEIY 122
Query: 255 VKHTGLSIE 263
KHT SI+
Sbjct: 123 GKHTKTSID 131
>gi|404330109|ref|ZP_10970557.1| ATP-dependent Clp protease proteolytic subunit [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 194
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 134/226 (59%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+P VIEQT RGERAYDIYSRLL++RII + IDD++++ VVAQLLFL +E S+K I
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANAVVAQLLFLAAEDSEKDIS 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+YINSPGGS+T+G+ IYDTMQY+ P ++T C+G A SM S LL AGEKG R++LPNS IM
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGMAASMGSFLLMAGEKGKRYALPNSEIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQPSGG+Q GQA
Sbjct: 122 IHQPSGGMQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D++I A+ I+ +++++N +Y + TG E I + T
Sbjct: 134 ----------SDMEIHAKRILQIREKLNHIYAERTGQPFEVIERDT 169
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
PL+P VIEQT RGERAYDIYSRLL++RII +
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIML 32
>gi|422307873|ref|ZP_16395027.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1035(8)]
gi|408618825|gb|EKK91883.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1035(8)]
Length = 208
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 144/250 (57%), Gaps = 59/250 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFW 283
+DIQI A+EI+ +K ++N L +HTG IE I + T ++ D + +
Sbjct: 147 ---------SDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYG 197
Query: 284 INGLYVKHTG 293
+ +KH G
Sbjct: 198 LVDAVLKHRG 207
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|322834046|ref|YP_004214073.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
Y9602]
gi|383191242|ref|YP_005201370.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
gi|384259224|ref|YP_005403158.1| ATP-dependent Clp protease proteolytic subunit [Rahnella aquatilis
HX2]
gi|321169247|gb|ADW74946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella sp.
Y9602]
gi|371589500|gb|AEX53230.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rahnella
aquatilis CIP 78.65 = ATCC 33071]
gi|380755200|gb|AFE59591.1| ATP-dependent Clp protease proteolytic subunit [Rahnella aquatilis
HX2]
Length = 207
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++ES +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAEGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG S+E+I + T
Sbjct: 147 ---------TDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDT 182
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 50
>gi|121727845|ref|ZP_01680912.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae V52]
gi|229507982|ref|ZP_04397487.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
330286]
gi|229511781|ref|ZP_04401260.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
B33]
gi|229515308|ref|ZP_04404768.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
21]
gi|229518918|ref|ZP_04408361.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC9]
gi|229523942|ref|ZP_04413347.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
albensis VL426]
gi|229529052|ref|ZP_04418442.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
12129(1)]
gi|229607528|ref|YP_002878176.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
MJ-1236]
gi|254849010|ref|ZP_05238360.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
gi|255745319|ref|ZP_05419268.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
101]
gi|262156043|ref|ZP_06029163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
INDRE 91/1]
gi|262167884|ref|ZP_06035584.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC27]
gi|297579440|ref|ZP_06941368.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
gi|298498040|ref|ZP_07007847.1| clp protease [Vibrio cholerae MAK 757]
gi|360035805|ref|YP_004937568.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. 2010EL-1786]
gi|379741755|ref|YP_005333724.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
IEC224]
gi|384424912|ref|YP_005634270.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
LMA3984-4]
gi|417813967|ref|ZP_12460620.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-49A2]
gi|417817704|ref|ZP_12464333.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HCUF01]
gi|417821275|ref|ZP_12467889.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE39]
gi|417825143|ref|ZP_12471731.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE48]
gi|418334942|ref|ZP_12943856.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-06A1]
gi|418338559|ref|ZP_12947453.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-23A1]
gi|418346477|ref|ZP_12951239.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-28A1]
gi|418350239|ref|ZP_12954970.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43A1]
gi|418355975|ref|ZP_12958694.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A1]
gi|419826901|ref|ZP_14350400.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1033(6)]
gi|419830397|ref|ZP_14353882.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-1A2]
gi|419834076|ref|ZP_14357531.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A2]
gi|419837652|ref|ZP_14361090.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46B1]
gi|421318223|ref|ZP_15768791.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1032(5)]
gi|421321694|ref|ZP_15772247.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1038(11)]
gi|421325493|ref|ZP_15776017.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1041(14)]
gi|421329155|ref|ZP_15779665.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1042(15)]
gi|421333063|ref|ZP_15783540.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1046(19)]
gi|421336651|ref|ZP_15787112.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1048(21)]
gi|421340082|ref|ZP_15790514.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-20A2]
gi|421344701|ref|ZP_15795104.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43B1]
gi|421348140|ref|ZP_15798517.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46A1]
gi|421351663|ref|ZP_15802028.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-25]
gi|421354596|ref|ZP_15804928.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-45]
gi|422897029|ref|ZP_16934479.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-40A1]
gi|422903231|ref|ZP_16938207.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48A1]
gi|422907115|ref|ZP_16941919.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-70A1]
gi|422909692|ref|ZP_16944335.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-09]
gi|422913962|ref|ZP_16948468.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HFU-02]
gi|422917778|ref|ZP_16952096.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02A1]
gi|422923227|ref|ZP_16956385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae BJG-01]
gi|422926168|ref|ZP_16959182.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-38A1]
gi|423145487|ref|ZP_17133081.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-19A1]
gi|423150163|ref|ZP_17137477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-21A1]
gi|423153983|ref|ZP_17141164.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-22A1]
gi|423157067|ref|ZP_17144160.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-32A1]
gi|423160637|ref|ZP_17147577.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-33A2]
gi|423165457|ref|ZP_17152186.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48B2]
gi|423731474|ref|ZP_17704777.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A1]
gi|423735604|ref|ZP_17708801.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41B1]
gi|423768488|ref|ZP_17712902.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A2]
gi|423822683|ref|ZP_17716693.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55C2]
gi|423856424|ref|ZP_17720500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59A1]
gi|423882950|ref|ZP_17724087.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-60A1]
gi|423895365|ref|ZP_17727112.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62A1]
gi|423930803|ref|ZP_17731506.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-77A1]
gi|423956436|ref|ZP_17734990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-40]
gi|423985222|ref|ZP_17738539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-46]
gi|423998208|ref|ZP_17741460.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02C1]
gi|424002918|ref|ZP_17745993.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A2]
gi|424006707|ref|ZP_17749677.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-37A1]
gi|424009944|ref|ZP_17752881.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-44C1]
gi|424017101|ref|ZP_17756930.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55B2]
gi|424020026|ref|ZP_17759812.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59B1]
gi|424024688|ref|ZP_17764339.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62B1]
gi|424027573|ref|ZP_17767176.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-69A1]
gi|424586845|ref|ZP_18026424.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1030(3)]
gi|424595492|ref|ZP_18034813.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1040(13)]
gi|424599408|ref|ZP_18038589.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
Cholerae CP1044(17)]
gi|424602129|ref|ZP_18041271.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1047(20)]
gi|424607100|ref|ZP_18046044.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1050(23)]
gi|424610923|ref|ZP_18049762.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-39A1]
gi|424613736|ref|ZP_18052524.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41A1]
gi|424617716|ref|ZP_18056388.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-42A1]
gi|424622495|ref|ZP_18061003.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-47A1]
gi|424625394|ref|ZP_18063855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A1]
gi|424629880|ref|ZP_18068167.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-51A1]
gi|424633923|ref|ZP_18072023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-52A1]
gi|424637005|ref|ZP_18075013.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55A1]
gi|424640914|ref|ZP_18078797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A1]
gi|424645459|ref|ZP_18083195.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A2]
gi|424648982|ref|ZP_18086645.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A1]
gi|424653228|ref|ZP_18090608.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A2]
gi|424659631|ref|ZP_18096880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-16]
gi|429887950|ref|ZP_19369454.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
PS15]
gi|440710125|ref|ZP_20890776.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
4260B]
gi|443504285|ref|ZP_21071243.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-64A1]
gi|443508183|ref|ZP_21074946.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-65A1]
gi|443512025|ref|ZP_21078663.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-67A1]
gi|443515583|ref|ZP_21082094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-68A1]
gi|443519377|ref|ZP_21085773.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-71A1]
gi|443524267|ref|ZP_21090480.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-72A2]
gi|443527901|ref|ZP_21093950.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-78A1]
gi|443531864|ref|ZP_21097878.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-7A1]
gi|443535661|ref|ZP_21101539.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-80A1]
gi|443539208|ref|ZP_21105062.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A1]
gi|449055648|ref|ZP_21734316.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. Inaba G4222]
gi|121629881|gb|EAX62295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae V52]
gi|229332826|gb|EEN98312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
12129(1)]
gi|229337523|gb|EEO02540.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae bv.
albensis VL426]
gi|229343607|gb|EEO08582.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC9]
gi|229348013|gb|EEO12972.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae TMA
21]
gi|229351746|gb|EEO16687.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
B33]
gi|229355487|gb|EEO20408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae BX
330286]
gi|229370183|gb|ACQ60606.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
MJ-1236]
gi|254844715|gb|EET23129.1| ATP-dependent Clp protease [Vibrio cholerae MO10]
gi|255737149|gb|EET92545.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholera CIRS
101]
gi|262023611|gb|EEY42312.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
RC27]
gi|262030221|gb|EEY48865.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
INDRE 91/1]
gi|297537034|gb|EFH75867.1| ATP-dependent Clp protease [Vibrio cholerae RC385]
gi|297542373|gb|EFH78423.1| clp protease [Vibrio cholerae MAK 757]
gi|327484465|gb|AEA78872.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
LMA3984-4]
gi|340036453|gb|EGQ97429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-49A2]
gi|340037427|gb|EGQ98402.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HCUF01]
gi|340038906|gb|EGQ99880.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE39]
gi|340046628|gb|EGR07558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE48]
gi|341621322|gb|EGS47068.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-70A1]
gi|341621465|gb|EGS47210.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48A1]
gi|341622390|gb|EGS48053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-40A1]
gi|341634452|gb|EGS59210.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-09]
gi|341636660|gb|EGS61354.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02A1]
gi|341637623|gb|EGS62301.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HFU-02]
gi|341644319|gb|EGS68544.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae BJG-01]
gi|341646374|gb|EGS70488.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-38A1]
gi|356417651|gb|EHH71266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-06A1]
gi|356418523|gb|EHH72120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-21A1]
gi|356423097|gb|EHH76558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-19A1]
gi|356428543|gb|EHH81769.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-22A1]
gi|356430201|gb|EHH83410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-23A1]
gi|356433556|gb|EHH86745.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-28A1]
gi|356439724|gb|EHH92689.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-32A1]
gi|356444735|gb|EHH97544.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43A1]
gi|356445734|gb|EHH98536.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-33A2]
gi|356450978|gb|EHI03683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-48B2]
gi|356452473|gb|EHI05152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A1]
gi|356646959|gb|AET27014.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. 2010EL-1786]
gi|378795265|gb|AFC58736.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
IEC224]
gi|395916481|gb|EJH27311.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1032(5)]
gi|395917331|gb|EJH28159.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1041(14)]
gi|395918688|gb|EJH29512.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1038(11)]
gi|395927689|gb|EJH38452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1042(15)]
gi|395928465|gb|EJH39218.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1046(19)]
gi|395931750|gb|EJH42494.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1048(21)]
gi|395939365|gb|EJH50047.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-20A2]
gi|395940781|gb|EJH51462.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-43B1]
gi|395942719|gb|EJH53395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46A1]
gi|395952108|gb|EJH62722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-25]
gi|395953721|gb|EJH64334.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-45]
gi|395958922|gb|EJH69377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A2]
gi|395959527|gb|EJH69955.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A2]
gi|395962173|gb|EJH72474.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-42A1]
gi|395970884|gb|EJH80601.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-47A1]
gi|395973487|gb|EJH83046.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1030(3)]
gi|395975870|gb|EJH85344.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1047(20)]
gi|408007245|gb|EKG45338.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-39A1]
gi|408012536|gb|EKG50313.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A1]
gi|408013145|gb|EKG50890.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41A1]
gi|408018228|gb|EKG55687.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-52A1]
gi|408023467|gb|EKG60630.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-56A1]
gi|408024055|gb|EKG61191.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55A1]
gi|408032385|gb|EKG68971.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1040(13)]
gi|408032931|gb|EKG69500.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-57A1]
gi|408041791|gb|EKG77885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
Cholerae CP1044(17)]
gi|408043275|gb|EKG79281.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1050(23)]
gi|408051987|gb|EKG87053.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-16]
gi|408055233|gb|EKG90172.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-51A1]
gi|408607691|gb|EKK81094.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1033(6)]
gi|408620170|gb|EKK93182.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-1A2]
gi|408624096|gb|EKK97048.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A1]
gi|408629787|gb|EKL02456.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-41B1]
gi|408633769|gb|EKL06070.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-50A2]
gi|408634659|gb|EKL06894.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55C2]
gi|408640712|gb|EKL12498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59A1]
gi|408641074|gb|EKL12855.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-60A1]
gi|408648898|gb|EKL20215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-61A2]
gi|408654235|gb|EKL25377.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-77A1]
gi|408655165|gb|EKL26290.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62A1]
gi|408657620|gb|EKL28698.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-40]
gi|408664453|gb|EKL35290.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HE-46]
gi|408845315|gb|EKL85431.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-37A1]
gi|408846088|gb|EKL86200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-17A2]
gi|408852563|gb|EKL92385.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-02C1]
gi|408856200|gb|EKL95895.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-46B1]
gi|408860012|gb|EKL99666.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-55B2]
gi|408863739|gb|EKM03213.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-44C1]
gi|408867120|gb|EKM06482.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-59B1]
gi|408870398|gb|EKM09678.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-62B1]
gi|408878876|gb|EKM17869.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-69A1]
gi|429224949|gb|EKY31247.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
PS15]
gi|439974348|gb|ELP50525.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
4260B]
gi|443431230|gb|ELS73782.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-64A1]
gi|443435125|gb|ELS81269.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-65A1]
gi|443439008|gb|ELS88723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-67A1]
gi|443442993|gb|ELS96295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-68A1]
gi|443446795|gb|ELT03451.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-71A1]
gi|443449601|gb|ELT09892.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-72A2]
gi|443453773|gb|ELT17591.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-78A1]
gi|443457254|gb|ELT24651.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-7A1]
gi|443461201|gb|ELT32274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-80A1]
gi|443465308|gb|ELT39968.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HC-81A1]
gi|448264687|gb|EMB01924.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
str. Inaba G4222]
Length = 208
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 144/250 (57%), Gaps = 59/250 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFW 283
+DIQI A+EI+ +K ++N L +HTG IE I + T ++ D + +
Sbjct: 147 ---------SDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYG 197
Query: 284 INGLYVKHTG 293
+ +KH G
Sbjct: 198 LVDAVLKHRG 207
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|83644978|ref|YP_433413.1| ATP-dependent Clp protease proteolytic subunit ClpP [Hahella
chejuensis KCTC 2396]
gi|83633021|gb|ABC28988.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hahella
chejuensis KCTC 2396]
Length = 213
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 142/237 (59%), Gaps = 59/237 (24%)
Query: 34 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFL 93
T + ++ LVP+V+EQT RGER+YDIYSRLL+ERII ++G ++D ++++VVAQLLFL
Sbjct: 8 TMMNKLEIANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFL 67
Query: 94 QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 153
+SE+ K IH+YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM +LLL+ G G
Sbjct: 68 ESENPDKDIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGK 127
Query: 154 RHSLPNSRIMIHQP-SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 212
R+ LP+SR+MIHQP GG+Q GQA
Sbjct: 128 RYCLPHSRVMIHQPLLGGLQ---------------------GQA---------------- 150
Query: 213 HSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++N + KHTG IE I + T
Sbjct: 151 ---------------------SDIEIHAKEILLLREKLNNILSKHTGQDIETIARDT 186
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 370 TFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
T + ++ LVP+V+EQT RGER+YDIYSRLL+ERII ++G V
Sbjct: 8 TMMNKLEIANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVE 53
>gi|416156277|ref|ZP_11604409.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 101P30B1]
gi|416216367|ref|ZP_11623691.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 7169]
gi|416220781|ref|ZP_11625590.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 103P14B1]
gi|416228844|ref|ZP_11627776.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 46P47B1]
gi|416236087|ref|ZP_11630453.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 12P80B1]
gi|416237864|ref|ZP_11631219.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC1]
gi|416243368|ref|ZP_11633889.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC7]
gi|416245839|ref|ZP_11634734.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC8]
gi|416248951|ref|ZP_11636285.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis CO72]
gi|416253183|ref|ZP_11638206.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis O35E]
gi|421779131|ref|ZP_16215625.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
gi|326561827|gb|EGE12162.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 7169]
gi|326563259|gb|EGE13526.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 46P47B1]
gi|326563373|gb|EGE13638.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 12P80B1]
gi|326565911|gb|EGE16072.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 103P14B1]
gi|326568952|gb|EGE19021.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC1]
gi|326569251|gb|EGE19312.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC7]
gi|326571926|gb|EGE21931.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis BC8]
gi|326575439|gb|EGE25364.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis 101P30B1]
gi|326576473|gb|EGE26381.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis CO72]
gi|326577944|gb|EGE27808.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis O35E]
gi|407813572|gb|EKF84352.1| ATP-dependent Clp protease proteolytic subunit ClpP [Moraxella
catarrhalis RH4]
Length = 217
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+GRGER++DI+SRLLRER+I + G ++D++++++VAQLLFL++++ +K IH+
Sbjct: 23 LVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVEDNMANLIVAQLLFLEADNPEKDIHL 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTM ++ P ++T C+GQA SM S LL+AGEKG R++L NSR+MI
Sbjct: 83 YINSPGGVVTAGMAIYDTMNFIKPHVSTICMGQAASMGSFLLSAGEKGKRYALANSRVMI 142
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 143 HQPLGGFR---------------------GQA---------------------------- 153
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EII LK ++N L +HTG IEK+ + T
Sbjct: 154 ---------SDIEIHAREIIELKAKLNRLLAEHTGQPIEKLERDT 189
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQ+GRGER++DI+SRLLRER+I + G V
Sbjct: 23 LVPMVIEQSGRGERSFDIFSRLLRERVIFLTGQVE 57
>gi|404379126|ref|ZP_10984194.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
gi|294483471|gb|EFG31156.1| ATP-dependent Clp protease proteolytic subunit [Simonsiella
muelleri ATCC 29453]
Length = 206
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 135/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GP++D +++VVAQLLFL+SE+ K I+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIYF 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTM ++ P + T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 70 YINSPGGSVSAGMSIFDTMNFIKPDVQTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I LK+++N L KHTG +EKI + T
Sbjct: 144 ----------DIEIHARELIKLKEKLNNLLAKHTGQPLEKIERDT 178
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVN 44
>gi|54309798|ref|YP_130818.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum SS9]
gi|46914236|emb|CAG21016.1| putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease,
proteolytic subunit [Vibrio vulnificus CMCP6]
[Photobacterium profundum SS9]
Length = 207
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 136/229 (59%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K
Sbjct: 12 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 71
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNS
Sbjct: 72 DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNS 131
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+MIHQP GG Q GQA
Sbjct: 132 RVMIHQPLGGFQ---------------------GQA------------------------ 146
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L KHTG +E + T
Sbjct: 147 -------------SDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 12 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|224373739|ref|YP_002608111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
profundicola AmH]
gi|223589486|gb|ACM93222.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nautilia
profundicola AmH]
Length = 196
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIE+TGRGERAYDIYSRLL++RII + G I+D +SS++VAQ+LFL++E+ +K I++
Sbjct: 4 LVPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHVSSIIVAQMLFLEAENPEKDIYL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTM Y+ P + T C+GQA SM + LL++G KG R +LP++RIMI
Sbjct: 64 YINSPGGVVTSGMAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 124 HQPLGGAQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +KK++N + ++TG S+ KI + T
Sbjct: 135 ---------TDIEIHAKEILRMKKELNKILAENTGQSVRKIERDT 170
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP VIE+TGRGERAYDIYSRLL++RII + G ++
Sbjct: 4 LVPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEIN 38
>gi|134295958|ref|YP_001119693.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
vietnamiensis G4]
gi|387902477|ref|YP_006332816.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
KJ006]
gi|166201808|sp|A4JF05.1|CLPP_BURVG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|134139115|gb|ABO54858.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
vietnamiensis G4]
gi|387577369|gb|AFJ86085.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
KJ006]
Length = 217
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNNLLAQHTGQDVERIARDT 192
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 60
>gi|430750770|ref|YP_007213678.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
gi|430734735|gb|AGA58680.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermobacillus composti KWC4]
Length = 198
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQ+ RGER+YDIYSRLL++RII + PIDD ++++V+AQLLFL +E +K I++
Sbjct: 3 LVPIVVEQSSRGERSYDIYSRLLKDRIIFLGSPIDDDVANLVIAQLLFLAAEDPEKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GLGIYDTMQY+ P ++T CVG A SMASLLL AG KG R++LPNS +MI
Sbjct: 63 YINSPGGSVTAGLGIYDTMQYIKPDVSTICVGIAASMASLLLTAGAKGKRYALPNSEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 123 HQPLGGVR---------------------GQAA--------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A+ I+ K ++N +YV+ TG EKI + T
Sbjct: 135 ----------DIKIHADWILKTKHKLNQIYVERTGQPYEKIERDT 169
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQ+ RGER+YDIYSRLL++RII + P+
Sbjct: 3 LVPIVVEQSSRGERSYDIYSRLLKDRIIFLGSPID 37
>gi|350552166|ref|ZP_08921372.1| ATP-dependent Clp protease proteolytic subunit [Thiorhodospira
sibirica ATCC 700588]
gi|349795031|gb|EGZ48837.1| ATP-dependent Clp protease proteolytic subunit [Thiorhodospira
sibirica ATCC 700588]
Length = 214
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 139/236 (58%), Gaps = 60/236 (25%)
Query: 36 HHSA--TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFL 93
HH A T + LVP+V+EQT RGERAYDIYSRLL+ER++ +GP++D +++++VAQLLFL
Sbjct: 5 HHGALATQALNLVPMVVEQTARGERAYDIYSRLLKERVVFAVGPVEDHMANLIVAQLLFL 64
Query: 94 QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGM 153
+SE+ K I +YINSPGG+VT+GL IYDTMQ++ P ++T C+GQA SM ++LL+ G KG
Sbjct: 65 ESENPDKDISLYINSPGGAVTAGLAIYDTMQFIKPDVSTLCIGQAASMGAVLLSGGAKGK 124
Query: 154 RHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 213
R+ L +SR+MIHQP GG Q GQA
Sbjct: 125 RYCLAHSRVMIHQPLGGFQ---------------------GQA----------------- 146
Query: 214 SLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EI+ ++ Q+N + KH+G SIE+I T
Sbjct: 147 --------------------SDIDIHAREILKIRAQLNEILAKHSGQSIERIENDT 182
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 36/46 (78%), Gaps = 2/46 (4%)
Query: 372 HHSA--TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
HH A T + LVP+V+EQT RGERAYDIYSRLL+ER++ +GPV
Sbjct: 5 HHGALATQALNLVPMVVEQTARGERAYDIYSRLLKERVVFAVGPVE 50
>gi|395225605|ref|ZP_10404124.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
gi|394446228|gb|EJF07066.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiovulum sp.
ES]
Length = 197
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P V+E++GRGER+YDIYSRLL++RI+ + G ++D+++S +VAQLLFL++E +K I+ Y
Sbjct: 4 IPYVVEKSGRGERSYDIYSRLLKDRIVMLSGEVNDAVASSIVAQLLFLEAEDPEKDIYFY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSG+ IYDTM Y+ P ++T C+GQA SM + LL+AGEKG R++LPN+RIMIH
Sbjct: 64 INSPGGVITSGMSIYDTMNYIKPQVSTICIGQAASMGAFLLSAGEKGKRYALPNARIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG + GQA
Sbjct: 124 QPLGGAK---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQIQAEEI+ +K+ +N + ++TG SIE I + T
Sbjct: 134 --------TDIQIQAEEILRMKRDLNKILSENTGQSIETIERDT 169
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P V+E++GRGER+YDIYSRLL++RI+ + G V+
Sbjct: 4 IPYVVEKSGRGERSYDIYSRLLKDRIVMLSGEVN 37
>gi|28897691|ref|NP_797296.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|260898290|ref|ZP_05906786.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus Peru-466]
gi|308094762|ref|ZP_05891792.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AN-5034]
gi|31340006|sp|Q87R80.1|CLPP_VIBPA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|28805904|dbj|BAC59180.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio
parahaemolyticus RIMD 2210633]
gi|308088425|gb|EFO38120.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus Peru-466]
gi|308093191|gb|EFO42886.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus AN-5034]
Length = 200
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 68 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 139 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDT 174
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|407696210|ref|YP_006820998.1| ATP-dependent Clp protease proteolytic subunit [Alcanivorax
dieselolei B5]
gi|407253548|gb|AFT70655.1| ATP-dependent Clp protease proteolytic subunit [Alcanivorax
dieselolei B5]
Length = 216
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER +DIYSRLL+ER+I ++G ++D +++++VAQ+LFL+SE+ K IH+
Sbjct: 26 LVPIVVEQTSRGERQFDIYSRLLKERVIFLIGQVEDYMANLIVAQMLFLESENPDKDIHL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVGQA SM + LLAAG +G R +LP+SR+MI
Sbjct: 86 YINSPGGSVTAGMSIYDTMQFIKPEVSTMCVGQAASMGAFLLAAGAEGKRLALPHSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 146 HQPLGGFQ---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K Q+N L KHTG +E + + T
Sbjct: 157 ---------SDIEIHAKEILKIKAQLNELLAKHTGQPLEVLERDT 192
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVPIV+EQT RGER +DIYSRLL+ER+I ++G V Y
Sbjct: 26 LVPIVVEQTSRGERQFDIYSRLLKERVIFLIGQVEDY 62
>gi|220934115|ref|YP_002513014.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995425|gb|ACL72027.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 216
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I +GP++D +++V+VAQLLFL+SE+ K I +
Sbjct: 19 LVPMVVEQTARGERAYDIYSRLLKERVIFAVGPVEDYMANVIVAQLLFLESENPDKDISL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+G+ IYDTMQ++ P ++T C+GQA SM ++LLA G KG R LP+SR+MI
Sbjct: 79 YINSPGGAVTAGMAIYDTMQFIKPDVSTLCIGQAASMGAVLLAGGAKGKRFCLPHSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ ++ ++N + HTG SIE+I + T
Sbjct: 150 ---------TDIDIHAREILKVRAELNRILAHHTGQSIEQIEQDT 185
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL+ER+I +GPV Y
Sbjct: 19 LVPMVVEQTARGERAYDIYSRLLKERVIFAVGPVEDY 55
>gi|149376712|ref|ZP_01894470.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
algicola DG893]
gi|149358951|gb|EDM47417.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter
algicola DG893]
Length = 227
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGER++DI+SRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K IH+
Sbjct: 33 LVPIVIEQTARGERSFDIFSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHL 92
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P +AT CVGQA SM + LLA G +G R LPNSR+MI
Sbjct: 93 YINSPGGSVTAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAEGKRACLPNSRVMI 152
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 153 HQPLGGYQ---------------------GQA---------------------------- 163
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ ++ +N + HTG ++ I K T
Sbjct: 164 ---------TDIEIHTREILKIRHTLNSILAHHTGQKLDTIAKDT 199
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGER++DI+SRLL+ER+I ++GPV
Sbjct: 33 LVPIVIEQTARGERSFDIFSRLLKERVIFLVGPVE 67
>gi|326795825|ref|YP_004313645.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
mediterranea MMB-1]
gi|326546589|gb|ADZ91809.1| ATP-dependent Clp protease proteolytic subunit [Marinomonas
mediterranea MMB-1]
Length = 210
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
A S LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D ++++VVAQLLFL+SE+
Sbjct: 12 AITSNGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENP 71
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL AG G R+ LP
Sbjct: 72 DKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLP 131
Query: 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218
NSR+MIHQP GG Q GQA
Sbjct: 132 NSRVMIHQPLGGYQ---------------------GQA---------------------- 148
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+++K ++N + HTG IEK+ + T
Sbjct: 149 ---------------SDIEIHTREILSIKHRLNEIIAHHTGQPIEKVAEDT 184
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
A S LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 12 AITSNGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVE 52
>gi|302878843|ref|YP_003847407.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
capsiferriformans ES-2]
gi|302581632|gb|ADL55643.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Gallionella
capsiferriformans ES-2]
Length = 202
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+E +GRGERAYDIYSRLL+ER++ ++G ++D ++++VAQ+LFL+SE+ K IH
Sbjct: 11 MIPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDHSANLIVAQMLFLESENPDKDIHF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AGEKG R +LPNSR+MI
Sbjct: 71 YINSPGGSVTAGMAIYDTMQFIKPAVSTLCIGQAASMGAFLLTAGEKGKRFALPNSRVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 131 HQPLGGFR---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ LK+++N + HTG ++E I + T
Sbjct: 142 ---------SDIEIHAREILYLKQKLNQMLADHTGQTVEAIERDT 177
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+E +GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 11 MIPMVVETSGRGERAYDIYSRLLKERVVFLVGEVN 45
>gi|60389653|sp|Q6LNW0.2|CLPP_PHOPR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 199
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 136/229 (59%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K
Sbjct: 4 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 63
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNS
Sbjct: 64 DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNS 123
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+MIHQP GG Q GQA
Sbjct: 124 RVMIHQPLGGFQ---------------------GQA------------------------ 138
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L KHTG +E + T
Sbjct: 139 -------------SDIQIHAKEILTIKHRLNSLLAKHTGQPLEVVEGDT 174
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 4 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|359396721|ref|ZP_09189772.1| ATP-dependent Clp protease proteolytic subunit [Halomonas
boliviensis LC1]
gi|357969399|gb|EHJ91847.1| ATP-dependent Clp protease proteolytic subunit [Halomonas
boliviensis LC1]
Length = 205
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLESENPDKDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ+V P ++T C+GQA SM +LLL AG G R+ LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFVKPDVSTVCIGQAASMGALLLTAGAAGKRYCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+ +++++N + HTG IE + + T
Sbjct: 143 ---------SDIEIHTREILGIREKLNQILAHHTGQDIEAVSRDT 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDY 48
>gi|90410782|ref|ZP_01218797.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum 3TCK]
gi|90328413|gb|EAS44711.1| ATP-dependent Clp protease proteolytic subunit [Photobacterium
profundum 3TCK]
Length = 207
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K
Sbjct: 12 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDK 71
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G KG R+ LPNS
Sbjct: 72 DIFLYINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAKGKRYCLPNS 131
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+MIHQP GG Q GQA
Sbjct: 132 RVMIHQPLGGFQ---------------------GQA------------------------ 146
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E + T
Sbjct: 147 -------------SDIQIHAQEILTIKQRLNNLLAEHTGQPLEIVEGDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 12 ITDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|422016474|ref|ZP_16363057.1| ATP-dependent Clp protease proteolytic subunit [Providencia
burhodogranariea DSM 19968]
gi|414092673|gb|EKT54346.1| ATP-dependent Clp protease proteolytic subunit [Providencia
burhodogranariea DSM 19968]
Length = 206
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIQL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L HTG SIE+I + T
Sbjct: 147 ---------TDIEIHAQEILKVKSRMNELMALHTGKSIEEINRDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|107028898|ref|YP_625993.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia AU 1054]
gi|115351962|ref|YP_773801.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ambifaria AMMD]
gi|116689944|ref|YP_835567.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia HI2424]
gi|170702050|ref|ZP_02892966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria IOP40-10]
gi|170733282|ref|YP_001765229.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia MC0-3]
gi|171320790|ref|ZP_02909797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MEX-5]
gi|172060888|ref|YP_001808540.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ambifaria MC40-6]
gi|206560359|ref|YP_002231123.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia J2315]
gi|402566278|ref|YP_006615623.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cepacia GG4]
gi|421866865|ref|ZP_16298527.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia H111]
gi|116243129|sp|Q1BH85.1|CLPP_BURCA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|122322952|sp|Q0BEF6.1|CLPP_BURCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201802|sp|A0K847.1|CLPP_BURCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|105898062|gb|ABF81020.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
cenocepacia AU 1054]
gi|115281950|gb|ABI87467.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
ambifaria AMMD]
gi|116648033|gb|ABK08674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
cenocepacia HI2424]
gi|169816524|gb|ACA91107.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
cenocepacia MC0-3]
gi|170133036|gb|EDT01448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria IOP40-10]
gi|171093960|gb|EDT39074.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MEX-5]
gi|171993405|gb|ACB64324.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
ambifaria MC40-6]
gi|198036400|emb|CAR52296.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia J2315]
gi|358073029|emb|CCE49405.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cenocepacia H111]
gi|402247475|gb|AFQ47929.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
cepacia GG4]
Length = 217
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNNLLAQHTGQDVERIARDT 192
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 60
>gi|399910853|ref|ZP_10779167.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. KM-1]
Length = 206
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K IH+
Sbjct: 13 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDHMANLIVAQLLFLESENPDKDIHL 72
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+G+ IYDTMQ++ P ++T C+GQA SM +LLLA G G R+SLP+SR+MI
Sbjct: 73 YINSPGGAVTAGMAIYDTMQFIKPDVSTVCIGQAASMGALLLAGGASGKRYSLPHSRMMI 132
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 133 HQPLGGYQ---------------------GQAA--------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I EI+ ++ ++N + HTG IE I + T
Sbjct: 145 ----------DIEIHTREILGIRDKLNRILAHHTGQDIETIARDT 179
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV
Sbjct: 13 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVE 47
>gi|356544357|ref|XP_003540619.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 2,
mitochondrial-like [Glycine max]
Length = 236
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/139 (65%), Positives = 110/139 (79%), Gaps = 3/139 (2%)
Query: 35 FHHSAT---LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLL 91
FH T S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI D + VVVAQLL
Sbjct: 14 FHGRNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLL 73
Query: 92 FLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 151
FL+SE+ KPI+MY+NSPGG++++GL IYDTMQY+ P+ T C+GQA SM SLLLAAG K
Sbjct: 74 FLESENPSKPINMYLNSPGGAISAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAK 133
Query: 152 GMRHSLPNSRIMIHQPSGG 170
G R SLPN+ IMIHQPSGG
Sbjct: 134 GERRSLPNATIMIHQPSGG 152
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Query: 371 FHHSAT---LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
FH T S L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 14 FHGRNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPIS 61
>gi|374369272|ref|ZP_09627306.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
gi|373099185|gb|EHP40272.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
basilensis OR16]
Length = 216
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ+V P +AT C+G A SM + LL+AG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVATLCMGMAASMGAFLLSAGAKGKRSALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG +EKI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNTILSEVTGQPVEKIARDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERLIFMVGEVN 59
>gi|431806262|ref|YP_007233163.1| ATP-dependent Clp protease proteolytic subunit [Liberibacter
crescens BT-1]
gi|430800237|gb|AGA64908.1| ATP-dependent Clp protease proteolytic subunit [Liberibacter
crescens BT-1]
Length = 209
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 110/126 (87%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQT RGER+YDIYSRLL++RII + GPI+D +S++V AQLLFL+SE+ K I M
Sbjct: 16 VVPVVIEQTNRGERSYDIYSRLLKDRIIFITGPIEDYISALVCAQLLFLESENCSKEISM 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+GL IYDTMQ++ PI+T+C+GQA SM SLLL+AGEKG R+ LPN+RIM+
Sbjct: 76 YINSPGGAVTAGLAIYDTMQFIRSPISTFCIGQAASMGSLLLSAGEKGHRYVLPNARIMV 135
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 136 HQPSGG 141
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+VP+VIEQT RGER+YDIYSRLL++RII + GP+ Y
Sbjct: 16 VVPVVIEQTNRGERSYDIYSRLLKDRIIFITGPIEDY 52
>gi|242206306|ref|XP_002469009.1| predicted protein [Postia placenta Mad-698-R]
gi|220731874|gb|EED85714.1| predicted protein [Postia placenta Mad-698-R]
Length = 200
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 91/124 (73%), Positives = 107/124 (86%), Gaps = 2/124 (1%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQTGRGER+YDI+SRLLRER+I + GPI D+ S++ VAQLLFL++E + KPIH+YIN
Sbjct: 1 MVIEQTGRGERSYDIFSRLLRERVIMLYGPIRDTDSALTVAQLLFLEAEETSKPIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+GL IYDT YV PI T+CVGQACSM SLLLAAGEKG RH+LP+S IMIHQP
Sbjct: 61 SPGGSVTAGLAIYDT--YVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPHSTIMIHQP 118
Query: 168 SGGV 171
SGG
Sbjct: 119 SGGA 122
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ I+ P G V GL IYDT YV PI T+CVGQACSM SLLLAAGEKG RH+LP+S IM
Sbjct: 57 LYINSPGGSVTAGLAIYDT--YVSSPIHTYCVGQACSMGSLLLAAGEKGKRHALPHSTIM 114
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
IHQPSGG GQA+DI I A+EI+ +++ + G+Y +H G E +
Sbjct: 115 IHQPSGGASGQASDIVIHAKEILRVRQLLTGIYQRHCGKDGESV 158
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 29/31 (93%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+VIEQTGRGER+YDI+SRLLRER+I + GP+
Sbjct: 1 MVIEQTGRGERSYDIFSRLLRERVIMLYGPI 31
>gi|395762551|ref|ZP_10443220.1| ATP-dependent Clp protease proteolytic subunit [Janthinobacterium
lividum PAMC 25724]
Length = 205
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 110/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGER+YDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ +K I +
Sbjct: 14 LVPMVVEQSGRGERSYDIYSRLLKERLIFMVGPVNDQMANLVVAQLLFLESENPEKEISL 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 74 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 133
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 134 HQPSGGSQ 141
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 78/106 (73%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ IYDTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMIH
Sbjct: 75 INSPGGSVSAGMAIYDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMIH 134
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
QPSGG QG A+DI+IQA EI+ L+ ++NG+ + TG SIE+I K T
Sbjct: 135 QPSGGSQGMASDIEIQAREILYLRTRLNGIMAERTGQSIEQIAKDT 180
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 14 LVPMVVEQSGRGERSYDIYSRLLKERLIFMVGPVN 48
>gi|329114674|ref|ZP_08243433.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
gi|326696154|gb|EGE47836.1| ATP-dependent Clp protease proteolytic subunit 1 [Acetobacter
pomorum DM001]
Length = 237
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
S LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D ++S++ AQLL+L+S + K
Sbjct: 30 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPNK 89
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPN+
Sbjct: 90 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNA 149
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 150 RVMVHQPSGGAQ---------------------GQA------------------------ 164
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA EI+ +++++N +Y +HTG ++E+I
Sbjct: 165 -------------SDIEIQAREILIIRQKLNEIYREHTGRTLEEI 196
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 30 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 67
>gi|148652118|ref|YP_001279211.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
PRwf-1]
gi|148571202|gb|ABQ93261.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
sp. PRwf-1]
Length = 240
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 162/290 (55%), Gaps = 72/290 (24%)
Query: 12 EVQSIILCPFIFQGLSLGHLAKTFH-HSATLSRP---LVPIVIEQTGRGERAYDIYSRLL 67
+++ II P F+ L H A + AT+S P LVP+V+EQ+ RGER++DIYSRLL
Sbjct: 9 DIERIINNPH-FETLVAAHDAVLRNMRDATVSVPQAALVPMVVEQSARGERSFDIYSRLL 67
Query: 68 RERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL 127
RER+I + G ++D++++++VAQ+LFL++E+ +K IH+YINSPGGSV++GL ++DTM ++
Sbjct: 68 RERVIFLTGQVEDNMANLIVAQMLFLEAENPEKDIHLYINSPGGSVSAGLAMFDTMNFIK 127
Query: 128 PPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPP 187
P ++T C+G A SM S LLAAG+KG R++L NSR+MIHQPSGG Q
Sbjct: 128 PDVSTICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQ--------------- 172
Query: 188 IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLK 247
GQA TDI+I A EI+ ++
Sbjct: 173 ------GQA-------------------------------------TDIEINAREILKIR 189
Query: 248 KQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIE 297
++N + + TG +EKI + D +W++ K GL E
Sbjct: 190 DRLNRILAERTGQPLEKIER---------DVERDYWLDAQEAKAYGLVDE 230
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 348 EVQSIILCPFIFQGLSLGHLAKTFH-HSATLSRP---LVPIVIEQTGRGERAYDIYSRLL 403
+++ II P F+ L H A + AT+S P LVP+V+EQ+ RGER++DIYSRLL
Sbjct: 9 DIERIINNPH-FETLVAAHDAVLRNMRDATVSVPQAALVPMVVEQSARGERSFDIYSRLL 67
Query: 404 RERIICVMGPVS 415
RER+I + G V
Sbjct: 68 RERVIFLTGQVE 79
>gi|332529294|ref|ZP_08405256.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
gracilis ATCC 19624]
gi|332041211|gb|EGI77575.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Hylemonella
gracilis ATCC 19624]
Length = 194
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+GRGER+YDIYSRLLRER+I ++GP++D +++VVAQLLFL+SE+ K I +
Sbjct: 3 MVPIVIEQSGRGERSYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLESENPDKEISL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTM ++ P ++T C+G A SM + LLAAG KG R SLPNS+IMI
Sbjct: 63 YINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGMAASMGAFLLAAGAKGKRFSLPNSKIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
T+I+I A EI+ ++Q+N + + TG +EKI + T Y L
Sbjct: 134 ---------TEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYL 175
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+GRGER+YDIYSRLLRER+I ++GPV+
Sbjct: 3 MVPIVIEQSGRGERSYDIYSRLLRERVIFLVGPVN 37
>gi|104781013|ref|YP_607511.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
entomophila L48]
gi|122403881|sp|Q1ICA8.1|CLPP_PSEE4 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|95110000|emb|CAK14705.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
entomophila L48]
Length = 213
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 139/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG S+E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDT 185
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|269792564|ref|YP_003317468.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100199|gb|ACZ19186.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 199
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQTGRGER+YDIYSRLL++RII + IDD LS++VVAQLLFL+SE K + +
Sbjct: 9 LIPYVIEQTGRGERSYDIYSRLLKDRIIFIGQEIDDHLSNLVVAQLLFLESEDPDKDVFV 68
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQYV P++T CVGQA SMA++LL+AGEKG R LP+SRIMI
Sbjct: 69 YINSPGGVVTAGLAIYDTMQYVKCPVSTICVGQAASMAAVLLSAGEKGKRICLPHSRIMI 128
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 129 HQPLGGAQ---------------------GQA---------------------------- 139
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA+EI+ +K+ +N + HTG +++I K T
Sbjct: 140 ---------SDIEIQAKEILRMKEILNSILSNHTGQPMDRIAKDT 175
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 28/30 (93%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQTGRGER+YDIYSRLL++RII +
Sbjct: 9 LIPYVIEQTGRGERSYDIYSRLLKDRIIFI 38
>gi|30248062|ref|NP_840132.1| ATP-dependent Clp protease proteolytic subunit [Nitrosomonas
europaea ATCC 19718]
gi|60389763|sp|Q82Y57.1|CLPP_NITEU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|30179947|emb|CAD83942.1| Clp protease [Nitrosomonas europaea ATCC 19718]
Length = 214
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE +GRGERAYDIYSRLLRERII ++GP+ ++ +++V+AQLLFL+SE+S+K I +
Sbjct: 19 LIPMVIETSGRGERAYDIYSRLLRERIIFLVGPVTETSANLVIAQLLFLESENSEKDIFL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL +YDT+Q++ P ++T CVGQA SM + LL AG KG R+ LPNSR+MI
Sbjct: 79 YINSPGGLVTAGLAVYDTIQFIKPDVSTLCVGQAASMGAFLLTAGAKGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK ++N + KHTG +++ I + T
Sbjct: 150 ---------SDIEIHAKEILALKSRLNEIMAKHTGQTVKAIERDT 185
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE +GRGERAYDIYSRLLRERII ++GPV+
Sbjct: 19 LIPMVIETSGRGERAYDIYSRLLRERIIFLVGPVT 53
>gi|384227894|ref|YP_005619639.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
gi|345538834|gb|AEO08811.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
Length = 204
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 142/240 (59%), Gaps = 60/240 (25%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
+++ L L+P+V+EQ +GER+YDIYSRLL+ERII ++G I+D++++ +VAQ+LFL+
Sbjct: 3 YNNQKNLCTTLIPMVVEQHSKGERSYDIYSRLLKERIIFMIGTIEDNMANNIVAQILFLE 62
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ +K I +YINSPGG +TSG+ IYDTMQ+V P I+T C+GQACSMA+LLL +G KG R
Sbjct: 63 AENPEKDIFLYINSPGGIITSGMSIYDTMQFVKPEISTICMGQACSMAALLLTSGTKGKR 122
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNS++MIHQP GG Q GQA
Sbjct: 123 FCLPNSKVMIHQPLGGYQ---------------------GQA------------------ 143
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV--CF 272
+DI I A EI+ +KK++N L HTG SI+KI K T CF
Sbjct: 144 -------------------SDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERDCF 184
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+++ L L+P+V+EQ +GER+YDIYSRLL+ERII ++G +
Sbjct: 3 YNNQKNLCTTLIPMVVEQHSKGERSYDIYSRLLKERIIFMIGTIE 47
>gi|313887837|ref|ZP_07821517.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846180|gb|EFR33561.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Peptoniphilus harei ACS-146-V-Sch2b]
Length = 194
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/255 (40%), Positives = 142/255 (55%), Gaps = 68/255 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL++RII + G ++D+++ ++VAQLLFL++E K I +
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGEVNDTMADLIVAQLLFLEAEDPNKDIQL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G IYDTM Y+ P ++T C+G A SM + LLA+G KG R +LPNS IMI
Sbjct: 63 YINSPGGSVSAGFAIYDTMNYIKPDVSTICIGMAASMGAFLLASGAKGKRFALPNSDIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 123 HQPSGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
+DIQI AE+I+ ++ ++N + + TG +EKI K T Y W+
Sbjct: 134 ---------SDIQINAEKILKIRHKLNEILAERTGQDLEKIEKDTDRDY---------WL 175
Query: 285 NGLYVKHTGLSIEKI 299
N K GL I+K+
Sbjct: 176 NSQEAKDYGL-IDKV 189
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL++RII + G V+
Sbjct: 3 LVPMVVEQTNRGERSYDIYSRLLKDRIIFLSGEVN 37
>gi|225175200|ref|ZP_03729196.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
gi|225169376|gb|EEG78174.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Dethiobacter
alkaliphilus AHT 1]
Length = 193
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL++RII + PIDD+++++V+AQLLFL+SE +K I++
Sbjct: 3 LVPMVVEQTNRGERAYDIYSRLLKDRIIFIGSPIDDNVANLVIAQLLFLESEDPEKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGGSV +GL IYDTMQY+ P ++T CVG A SM ++LLAAG G R SLPNSRIM+
Sbjct: 63 YVNSPGGSVYAGLAIYDTMQYIKPDVSTICVGLAASMGAVLLAAGADGKRFSLPNSRIMV 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQAV--------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
DI+I A+EI+ +++++N + HTG +E+I + T Y +
Sbjct: 135 ----------DIEIHAKEILRIRERLNEILSGHTGKPVEQIARDTDRDYFM 175
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL++RII + P+
Sbjct: 3 LVPMVVEQTNRGERAYDIYSRLLKDRIIFIGSPID 37
>gi|258542726|ref|YP_003188159.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|384042647|ref|YP_005481391.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
gi|384051164|ref|YP_005478227.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|384054272|ref|YP_005487366.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|384057506|ref|YP_005490173.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|384060147|ref|YP_005499275.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|384063439|ref|YP_005484081.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|384119449|ref|YP_005502073.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256633804|dbj|BAH99779.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01]
gi|256636863|dbj|BAI02832.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-03]
gi|256639916|dbj|BAI05878.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-07]
gi|256642972|dbj|BAI08927.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-22]
gi|256646027|dbj|BAI11975.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-26]
gi|256649080|dbj|BAI15021.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-32]
gi|256652067|dbj|BAI18001.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655124|dbj|BAI21051.1| Clp protease proteolytic subunit ClpP [Acetobacter pasteurianus IFO
3283-12]
Length = 220
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
S LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D ++S++ AQLL+L+S + K
Sbjct: 13 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPNK 72
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R +LPN+
Sbjct: 73 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGRRFALPNA 132
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 133 RVMVHQPSGGAQ---------------------GQA------------------------ 147
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA EI+ +++++N +Y +HTG ++E+I
Sbjct: 148 -------------SDIEIQAREILIIRQKLNEIYREHTGRTLEEI 179
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 13 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 50
>gi|15641924|ref|NP_231556.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|147674197|ref|YP_001217455.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
O395]
gi|153824129|ref|ZP_01976796.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae B33]
gi|153826398|ref|ZP_01979065.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae MZO-2]
gi|227082052|ref|YP_002810603.1| ATP-dependent Clp protease proteolytic subunit [Vibrio cholerae
M66-2]
gi|227118370|ref|YP_002820266.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
gi|254286858|ref|ZP_04961810.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae AM-19226]
gi|18203199|sp|Q9KQS6.1|CLPP_VIBCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|172047646|sp|A5F6X0.1|CLPP_VIBC3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|254763808|sp|C3LNM6.1|CLPP_VIBCM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|9656458|gb|AAF95070.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|126518348|gb|EAZ75571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae B33]
gi|146316080|gb|ABQ20619.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
gi|149739876|gb|EDM54067.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae MZO-2]
gi|150423008|gb|EDN14957.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae AM-19226]
gi|227009940|gb|ACP06152.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae M66-2]
gi|227013820|gb|ACP10030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae O395]
Length = 200
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 144/250 (57%), Gaps = 59/250 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 68 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFW 283
+DIQI A+EI+ +K ++N L +HTG IE I + T ++ D + +
Sbjct: 139 ---------SDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYG 189
Query: 284 INGLYVKHTG 293
+ +KH G
Sbjct: 190 LVDAVLKHRG 199
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|352101155|ref|ZP_08958578.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. HAL1]
gi|350600639|gb|EHA16700.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. HAL1]
Length = 205
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLESENPDKDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ+V P ++T C+GQA SM +LLL AG G R+ LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFVKPDVSTVCIGQAASMGALLLTAGAAGKRYCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+ +++++N + HTG IE + + T
Sbjct: 143 ---------SDIEIHTREILGIREKLNQILAHHTGQDIETVSRDT 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDY 48
>gi|448747538|ref|ZP_21729195.1| Peptidase S14/S49 [Halomonas titanicae BH1]
gi|445564818|gb|ELY20933.1| Peptidase S14/S49 [Halomonas titanicae BH1]
Length = 205
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLESENPDKDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ+V P ++T C+GQA SM +LLL AG G R+ LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFVKPDVSTVCIGQAASMGALLLTAGAAGKRYCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+ +++++N + HTG IE + + T
Sbjct: 143 ---------SDIEIHTREILGIREKLNQILAHHTGQEIEAVSRDT 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDY 48
>gi|399060628|ref|ZP_10745703.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Novosphingobium sp. AP12]
gi|398037346|gb|EJL30540.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Novosphingobium sp. AP12]
Length = 221
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 114/141 (80%)
Query: 32 AKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLL 91
A+ H+ ++ LVP+V+EQT RGER++DIYSRLLRERI+ + G ++D ++S++VAQLL
Sbjct: 10 AQGKFHTDPVTGALVPMVVEQTSRGERSFDIYSRLLRERIVFITGQVEDHMASLIVAQLL 69
Query: 92 FLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 151
FL+SE+ K I MYINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE
Sbjct: 70 FLESENPSKDISMYINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEP 129
Query: 152 GMRHSLPNSRIMIHQPSGGVQ 172
GMR +LPN+RIM+HQPSGG Q
Sbjct: 130 GMRIALPNARIMVHQPSGGAQ 150
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 83/105 (79%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+H
Sbjct: 84 INSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVH 143
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
QPSGG QG A+DI+IQA EI+ +++++N LYVK+TG +++ I K+
Sbjct: 144 QPSGGAQGMASDIEIQAREILRMRRRLNDLYVKYTGKTLDAIEKA 188
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 368 AKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
A+ H+ ++ LVP+V+EQT RGER++DIYSRLLRERI+ + G V
Sbjct: 10 AQGKFHTDPVTGALVPMVVEQTSRGERSFDIYSRLLRERIVFITGQVE 57
>gi|333368408|ref|ZP_08460607.1| ATP-dependent Clp protease, protease subunit [Psychrobacter sp.
1501(2011)]
gi|332977273|gb|EGK14064.1| ATP-dependent Clp protease, protease subunit [Psychrobacter sp.
1501(2011)]
Length = 240
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 159/290 (54%), Gaps = 72/290 (24%)
Query: 12 EVQSIILCPFIFQGLSLGHLAKTFH-HSATLSRP---LVPIVIEQTGRGERAYDIYSRLL 67
+++ II P F+ L H A AT+S P LVP+V+EQ+ RGER++DIYSRLL
Sbjct: 9 DIERIINNPH-FEKLVAAHDAVLRDMRDATVSVPQAALVPMVVEQSARGERSFDIYSRLL 67
Query: 68 RERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL 127
RER+I + G ++D++++++VAQ+LFL++E+ K IH+YINSPGGSV++GL ++DTM ++
Sbjct: 68 RERVIFLTGQVEDNMANLIVAQMLFLEAENPDKDIHLYINSPGGSVSAGLAMFDTMNFIK 127
Query: 128 PPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPP 187
P ++T C+G A SM S LLAAG+KG R++L NSR+MIHQPSGG Q
Sbjct: 128 PDVSTICMGGAYSMGSFLLAAGQKGKRYALANSRVMIHQPSGGAQ--------------- 172
Query: 188 IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLK 247
GQA TDI+I A EI+ ++
Sbjct: 173 ------GQA-------------------------------------TDIEINAREILKIR 189
Query: 248 KQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIE 297
++N + + TG +EKI + Y W++ K GL E
Sbjct: 190 DRLNRILAERTGQPLEKIERDVERDY---------WLDAQEAKEYGLVDE 230
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 348 EVQSIILCPFIFQGLSLGHLAKTFH-HSATLSRP---LVPIVIEQTGRGERAYDIYSRLL 403
+++ II P F+ L H A AT+S P LVP+V+EQ+ RGER++DIYSRLL
Sbjct: 9 DIERIINNPH-FEKLVAAHDAVLRDMRDATVSVPQAALVPMVVEQSARGERSFDIYSRLL 67
Query: 404 RERIICVMGPVS 415
RER+I + G V
Sbjct: 68 RERVIFLTGQVE 79
>gi|153835695|ref|ZP_01988362.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
harveyi HY01]
gi|156973712|ref|YP_001444619.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi ATCC
BAA-1116]
gi|269961045|ref|ZP_06175414.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
1DA3]
gi|350530714|ref|ZP_08909655.1| ATP-dependent Clp protease proteolytic subunit [Vibrio rotiferianus
DAT722]
gi|388602070|ref|ZP_10160466.1| ATP-dependent Clp protease proteolytic subunit [Vibrio campbellii
DS40M4]
gi|424042695|ref|ZP_17780376.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-02]
gi|424047074|ref|ZP_17784635.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-03]
gi|444425230|ref|ZP_21220675.1| ATP-dependent Clp protease proteolytic subunit [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|226706635|sp|A7MV87.1|CLPP_VIBHB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|148867676|gb|EDL66952.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
harveyi HY01]
gi|156525306|gb|ABU70392.1| hypothetical protein VIBHAR_01417 [Vibrio harveyi ATCC BAA-1116]
gi|269834264|gb|EEZ88354.1| ATP-dependent Clp protease proteolytic subunit [Vibrio harveyi
1DA3]
gi|408884372|gb|EKM23116.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-03]
gi|408887529|gb|EKM26081.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-02]
gi|444241518|gb|ELU53041.1| ATP-dependent Clp protease proteolytic subunit [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 208
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|312882507|ref|ZP_07742248.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309369907|gb|EFP97418.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 208
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +KK++N L +HTG ++ I + T
Sbjct: 147 ---------SDIQIHAQEILTIKKKLNTLLAEHTGQPLDVIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|410446864|ref|ZP_11300967.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
gi|409980536|gb|EKO37287.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [SAR86
cluster bacterium SAR86E]
Length = 204
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERA+DIYSRLL+ERII + GPIDD +S++VVAQLLFL+SE+ +K I +
Sbjct: 8 LVPMVVEQTPRGERAFDIYSRLLKERIIFLSGPIDDYISNLVVAQLLFLESENPEKDISI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG ++SGL IYDTMQ++ P ++T C+GQA SM SLLLA G KG R +L NSRIMI
Sbjct: 68 YINSPGGVISSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAKGKRFALTNSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+E++ +K+++N + KHTG +++K+ + T
Sbjct: 139 ---------SDFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDT 174
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ Y
Sbjct: 8 LVPMVVEQTPRGERAFDIYSRLLKERIIFLSGPIDDY 44
>gi|390949050|ref|YP_006412809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiocystis
violascens DSM 198]
gi|390425619|gb|AFL72684.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thiocystis
violascens DSM 198]
Length = 214
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER++DIYSRLL+ER+I ++G ++D +S++VVAQLLFL+SE+ K IH+
Sbjct: 17 LVPIVVEQTARGERSFDIYSRLLKERVIFLVGQVEDHMSNLVVAQLLFLESENPDKDIHL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM++V P ++T C+GQA SM +LLLA G KG R+ LP+SR+MI
Sbjct: 77 YINSPGGSVTAGLAIYDTMRFVRPDVSTMCIGQAASMGALLLAGGAKGKRYCLPHSRMMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGFQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ ++ ++N + +HTG IEKI + T
Sbjct: 148 ---------TDIDIHAREILYIRDKLNQILSEHTGQPIEKIAEDT 183
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 17 LVPIVVEQTARGERSFDIYSRLLKERVIFLVGQVE 51
>gi|451967071|ref|ZP_21920318.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda
NBRC 105688]
gi|451314224|dbj|GAC65680.1| ATP-dependent Clp protease proteolytic subunit [Edwardsiella tarda
NBRC 105688]
Length = 206
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG +G R LPNSR+MI
Sbjct: 75 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 135 HQPLGGFQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+++K ++N L KH+G +E I + T
Sbjct: 146 ---------TDIEIHAKEILSIKARMNTLMAKHSGQPLEVIERDT 181
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 49
>gi|85707624|ref|ZP_01038690.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
gi|85689158|gb|EAQ29161.1| ATP-dependent Clp protease [Erythrobacter sp. NAP1]
Length = 235
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 111/132 (84%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
L+ LVP V+EQ+ RGERA+DI+SRLLRERI+ V G ++D+++S++VAQLLFL+SE+ K
Sbjct: 23 LTGALVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQLLFLESENPSK 82
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
PI MYINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+
Sbjct: 83 PISMYINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRVALPNA 142
Query: 161 RIMIHQPSGGVQ 172
RIM+HQPSGG +
Sbjct: 143 RIMVHQPSGGAR 154
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+ LVP V+EQ+ RGERA+DI+SRLLRERI+ V G V
Sbjct: 23 LTGALVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVE 61
>gi|381393570|ref|ZP_09919291.1| ATP-dependent Clp protease, protease subunit [Glaciecola punicea
DSM 14233 = ACAM 611]
gi|379330786|dbj|GAB54424.1| ATP-dependent Clp protease, protease subunit [Glaciecola punicea
DSM 14233 = ACAM 611]
Length = 207
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 138/228 (60%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVP+VIEQT RGER++DIYSRLL+E +I ++G ++D +++++VAQ+LFL++E+ +K
Sbjct: 9 SNALVPMVIEQTARGERSFDIYSRLLKENVIFLVGQVEDHMANLIVAQMLFLEAENPEKD 68
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I +YINSPGGSVT+G+ IYDTM ++ P ++T C+GQA SM + LL+AGEKG R+ LPNSR
Sbjct: 69 IFLYINSPGGSVTAGMAIYDTMNFIKPNVSTVCIGQAASMGAFLLSAGEKGKRYVLPNSR 128
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+MIHQP GG Q GQA
Sbjct: 129 VMIHQPLGGFQ---------------------GQA------------------------- 142
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+++K+++N L +HTG EK+ K T
Sbjct: 143 ------------SDFEIHAKEILSIKEKMNRLMAQHTGQKYEKVAKDT 178
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVP+VIEQT RGER++DIYSRLL+E +I ++G V
Sbjct: 9 SNALVPMVIEQTARGERSFDIYSRLLKENVIFLVGQVE 46
>gi|421492899|ref|ZP_15940258.1| hypothetical protein MU9_1428 [Morganella morganii subsp. morganii
KT]
gi|400193004|gb|EJO26141.1| hypothetical protein MU9_1428 [Morganella morganii subsp. morganii
KT]
Length = 262
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER+YDIYSRLL++RII + G ++D +++++VAQLLFL++E+ +K I +
Sbjct: 72 LVPMVIEQTSRGERSYDIYSRLLKDRIIFLTGQVEDHMANLIVAQLLFLEAENPEKDISL 131
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T CVGQACSM S LLAAG G R+ LPNSR+MI
Sbjct: 132 YINSPGGVITAGMSIYDTMQFIKPQVSTICVGQACSMGSFLLAAGAPGKRYCLPNSRVMI 191
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 192 HQPLGGYQ---------------------GQA---------------------------- 202
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L HTG S+E+I + T
Sbjct: 203 ---------TDIEIHAQEILKVKARMNDLLAHHTGKSVEEIQRDT 238
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER+YDIYSRLL++RII + G V
Sbjct: 72 LVPMVIEQTSRGERSYDIYSRLLKDRIIFLTGQVE 106
>gi|339483339|ref|YP_004695125.1| ATP-dependent Clp protease proteolytic subunit [Nitrosomonas sp.
Is79A3]
gi|338805484|gb|AEJ01726.1| ATP-dependent Clp protease proteolytic subunit [Nitrosomonas sp.
Is79A3]
Length = 213
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE +GRGERAYDIYSRLL+ER++ ++GP+ ++ +++VVAQ LFL+SE+S+K IH
Sbjct: 18 LIPMVIETSGRGERAYDIYSRLLKERVVFLVGPVTETTANLVVAQFLFLESENSEKDIHF 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQY+ P ++T C+GQA SM +LLL AG KG R+ LPNSR+MI
Sbjct: 78 YINSPGGMVSAGLAIYDTMQYIKPDVSTLCIGQAASMGALLLTAGAKGKRYCLPNSRVMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 138 HQPLGGFQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ LK ++N + KH G + + K T
Sbjct: 149 ---------SDIEIHAREILYLKARLNEIMAKHAGRPVSDLEKDT 184
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE +GRGERAYDIYSRLL+ER++ ++GPV+
Sbjct: 18 LIPMVIETSGRGERAYDIYSRLLKERVVFLVGPVT 52
>gi|325577258|ref|ZP_08147742.1| ATP-dependent Clp protease, protease subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|419802180|ref|ZP_14327381.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus parainfluenzae HK262]
gi|325160840|gb|EGC72961.1| ATP-dependent Clp protease, protease subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|385191502|gb|EIF38916.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus parainfluenzae HK262]
Length = 193
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE KK I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPKKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P + T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+ +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKQTLNERLAFHTGQSIERIEKDT 169
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|444363684|ref|ZP_21164096.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia BC7]
gi|444369902|ref|ZP_21169607.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia K56-2Valvano]
gi|443594526|gb|ELT63169.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia BC7]
gi|443598384|gb|ELT66748.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia cenocepacia K56-2Valvano]
Length = 208
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 137 HQPLGGAR---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 148 ---------SDIEIQAREILYLKERLNNLLAQHTGQDVERIARDT 183
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 51
>gi|404493314|ref|YP_006717420.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
carbinolicus DSM 2380]
gi|90183182|sp|Q3A3X5.1|CLPP_PELCD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77545370|gb|ABA88932.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
carbinolicus DSM 2380]
Length = 194
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQTGRGERAYDI+SRLL++RII + G +DD ++++++AQ+LFL+SE +K I +
Sbjct: 3 LIPMVVEQTGRGERAYDIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQYV P++T CVGQA SM ++LLAAG +G R +LP++RIMI
Sbjct: 63 YINSPGGVVTAGMAIYDTMQYVRCPVSTLCVGQAASMGAVLLAAGGEGKRFALPHARIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPWGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ L++ +NG+ HTG ++EKI T
Sbjct: 134 ---------TDINIHAQEILRLRETLNGVLASHTGQTLEKIATDT 169
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQTGRGERAYDI+SRLL++RII + G V
Sbjct: 3 LIPMVVEQTGRGERAYDIFSRLLKDRIIFLGGAVD 37
>gi|353228901|emb|CCD75072.1| peptidase Clp (S14 family) [Schistosoma mansoni]
Length = 249
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 143/254 (56%), Gaps = 59/254 (23%)
Query: 15 SIILCPFIFQGLSLGHLA-KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIIC 73
S + C +FQ L+ K FH + PL+P+V++++ ER YDIYSRLL++RIIC
Sbjct: 13 SSLACYALFQCRFRNKLSLKCFHTGSQNYIPLIPMVLDKSTNVERYYDIYSRLLKDRIIC 72
Query: 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATW 133
+MG + D ++ V+AQLLFLQSE + PIH+YINSPGGSVT+GL IYDTMQ++ PP+AT+
Sbjct: 73 LMGAVTDEMAGSVIAQLLFLQSEDKRTPIHLYINSPGGSVTAGLAIYDTMQFIRPPVATF 132
Query: 134 CVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV 193
C+GQA SM SLLLAAG G R +LP+S IM+HQPSG
Sbjct: 133 CIGQASSMGSLLLAAGSHGCRFALPHSSIMVHQPSGSAH--------------------- 171
Query: 194 GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGL 253
GQA +DI+I+AEE+I + IN +
Sbjct: 172 GQA-------------------------------------SDIKIRAEELIRTRSVINTI 194
Query: 254 YVKHTGLSIEKIGK 267
Y +HT S E I K
Sbjct: 195 YERHTKQSQEVIEK 208
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 351 SIILCPFIFQGLSLGHLA-KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIIC 409
S + C +FQ L+ K FH + PL+P+V++++ ER YDIYSRLL++RIIC
Sbjct: 13 SSLACYALFQCRFRNKLSLKCFHTGSQNYIPLIPMVLDKSTNVERYYDIYSRLLKDRIIC 72
Query: 410 VMGPVS 415
+MG V+
Sbjct: 73 LMGAVT 78
>gi|254507754|ref|ZP_05119885.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus 16]
gi|219549279|gb|EED26273.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
parahaemolyticus 16]
Length = 208
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|126668931|ref|ZP_01739872.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
ELB17]
gi|126626594|gb|EAZ97250.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
ELB17]
Length = 211
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/230 (43%), Positives = 133/230 (57%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
+ S LVP+VIEQT RGER++DIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+
Sbjct: 12 STSAALVPMVIEQTARGERSFDIYSRLLKERVIFMVGPVEDHMANLVVAQLLFLESENPD 71
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K IH+YINSPGGSV++G+ IYDTMQ++ P +AT CVGQA SM + LLA G G R LPN
Sbjct: 72 KDIHLYINSPGGSVSAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPN 131
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
SR+MIHQP GG Q GQA
Sbjct: 132 SRVMIHQPLGGYQ---------------------GQA----------------------- 147
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ ++ +N + HTG +E I + T
Sbjct: 148 --------------TDIEIHTREILKIRHTLNSILAHHTGQDLETISRDT 183
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 34/39 (87%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ S LVP+VIEQT RGER++DIYSRLL+ER+I ++GPV
Sbjct: 12 STSAALVPMVIEQTARGERSFDIYSRLLKERVIFMVGPV 50
>gi|340777394|ref|ZP_08697337.1| ATP-dependent Clp protease proteolytic subunit [Acetobacter aceti
NBRC 14818]
Length = 212
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 108/260 (41%), Positives = 147/260 (56%), Gaps = 60/260 (23%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D ++SV+ AQLL+L+S + K
Sbjct: 10 FNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASVISAQLLYLESVNPNK 69
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA G +G R +LPN+
Sbjct: 70 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGAEGKRFALPNA 129
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 130 RVMVHQPSGGAQ---------------------GQA------------------------ 144
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI-GKSTVCFYVLHDPY 279
+DI+IQA EI+ +++++N +Y +HTG ++E I K Y+ D
Sbjct: 145 -------------SDIEIQAREILTIRQRLNEIYREHTGQTLEDIEQKLERDSYMSADEA 191
Query: 280 ICFWI-NGLYVKHTGLSIEK 298
F I + + KH S EK
Sbjct: 192 KAFGIVDEVIKKHPAQSGEK 211
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 10 FNNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 47
>gi|73541074|ref|YP_295594.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
JMP134]
gi|124013825|sp|Q472D3.1|CLPP_RALEJ RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|72118487|gb|AAZ60750.1| ATP-dependent Clp protease proteolytic subunit ClpP [Ralstonia
eutropha JMP134]
Length = 216
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ+V P + T C+G A SM + LLAAG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFVKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG +EKI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNSILSEVTGQPVEKIARDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFLVGEVN 59
>gi|323498276|ref|ZP_08103278.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
DSM 21326]
gi|323316704|gb|EGA69713.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sinaloensis
DSM 21326]
Length = 208
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|284047883|ref|YP_003398222.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
gi|283952104|gb|ADB46907.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Acidaminococcus fermentans DSM 20731]
Length = 197
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQT +GER+YDIYSRLL++RII V G I+D ++++++AQLLFL+SE K +H+Y
Sbjct: 4 VPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIIAQLLFLESEDPDKDVHLY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV++GL IYDTMQY+ P ++T CVG A SMAS+LLAAG KG R++LP+SR+MIH
Sbjct: 64 INSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASVLLAAGTKGKRYALPHSRVMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +++++N + HTG + E+I T
Sbjct: 134 --------TDIEIHAREILRIREEMNQILASHTGQTPEQIRLDT 169
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQT +GER+YDIYSRLL++RII V G +
Sbjct: 4 VPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIE 37
>gi|394987652|ref|ZP_10380491.1| ATP-dependent Clp protease proteolytic subunit [Sulfuricella
denitrificans skB26]
gi|393792871|dbj|GAB70130.1| ATP-dependent Clp protease proteolytic subunit [Sulfuricella
denitrificans skB26]
Length = 209
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERA+DIYSRLL+ER+I ++GP++D ++++VAQ+LFL+S++ K I
Sbjct: 14 MVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVNDVTANLIVAQMLFLESDNPDKDIFF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+GQA SM S LLAAG KG R LPNSR+MI
Sbjct: 74 YINSPGGSVSAGMSIYDTMQFIKPDVSTLCLGQAASMGSFLLAAGAKGKRFCLPNSRVMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGFQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++N + +HTG S++ I K +
Sbjct: 145 ---------SDIEIHAKEILYLRQRLNTMLAQHTGQSVKTIEKDS 180
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERA+DIYSRLL+ER+I ++GPV+
Sbjct: 14 MVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVN 48
>gi|294635324|ref|ZP_06713821.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
tarda ATCC 23685]
gi|291091300|gb|EFE23861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Edwardsiella
tarda ATCC 23685]
Length = 194
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 3 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG +G R LPNSR+MI
Sbjct: 63 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAQGKRFCLPNSRVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+++K ++N L KH+G +E I + T
Sbjct: 134 ---------TDIEIHAKEILSIKARMNTLMAKHSGQPLEVIERDT 169
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 3 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 37
>gi|422299469|ref|ZP_16387036.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
avellanae BPIC 631]
gi|407988618|gb|EKG31111.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
avellanae BPIC 631]
Length = 192
Score = 191 bits (486), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 134/222 (60%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+YIN
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G +G RH LPNSR+MIHQP
Sbjct: 61 SPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N L HTG S+E I + T
Sbjct: 129 ------SDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDT 164
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFMVGPVEDY 34
>gi|260776382|ref|ZP_05885277.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607605|gb|EEX33870.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
coralliilyticus ATCC BAA-450]
Length = 208
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|399002988|ref|ZP_10705662.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM18]
gi|398123674|gb|EJM13215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pseudomonas
sp. GM18]
Length = 211
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRYCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L H+G ++E+I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNTLMAAHSGRTLEEIERDT 185
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|392954369|ref|ZP_10319921.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrocarboniphaga effusa AP103]
gi|391858268|gb|EIT68798.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrocarboniphaga effusa AP103]
Length = 193
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 108/125 (86%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDIYSRLL+ERII ++GPIDD ++++VVAQ+LFL+SE+ K IH+YIN
Sbjct: 1 MVVEQTARGERAYDIYSRLLKERIIFIVGPIDDYMANIVVAQMLFLESENPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG +T+GL IYDTM+++ P +AT C+GQA SM + LL+AG KG R+SLP+SRIMIHQP
Sbjct: 61 SPGGIITAGLSIYDTMKFIKPDVATMCIGQAASMGAFLLSAGTKGKRYSLPHSRIMIHQP 120
Query: 168 SGGVQ 172
SGG Q
Sbjct: 121 SGGAQ 125
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 81/112 (72%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G + GL IYDTM+++ P +AT C+GQA SM + LL+AG KG R+SLP+SRIMIH
Sbjct: 59 INSPGGIITAGLSIYDTMKFIKPDVATMCIGQAASMGAFLLSAGTKGKRYSLPHSRIMIH 118
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
QPSGG QG A D++IQA+EI+ L++++N L HTG IE+I K Y +
Sbjct: 119 QPSGGAQGTAADVEIQAKEILYLRERLNKLMADHTGQPIERIAKDVERDYFM 170
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+V+EQT RGERAYDIYSRLL+ERII ++GP+ Y
Sbjct: 1 MVVEQTARGERAYDIYSRLLKERIIFIVGPIDDY 34
>gi|37527729|ref|NP_931074.1| ATP-dependent Clp protease proteolytic subunit [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|60389709|sp|Q7N0L3.1|CLPP_PHOLL RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|36787165|emb|CAE16241.1| ATP-dependent proteolytic subunit of clpA-clpP serine protease,
heat shock protein F21.5 (Endopeptidase Clp)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 207
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++V AQ+LFL++E+ +K I +
Sbjct: 16 LVPMVVEQTTRGERSYDIYSRLLKERIIFLTGQVEDHMANLVAAQMLFLEAENPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG IE+I K T
Sbjct: 147 ---------TDIEIHAQEILKVKSRMNELMAKHTGRPIEEIAKDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTTRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|119713091|gb|ABL97160.1| ATP-dependent Clp protease proteolytic subunit [uncultured marine
bacterium EB0_49D07]
Length = 204
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 138/230 (60%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
T++ LVP+V+EQT RGERA+DIYSRLL+ERII + GPIDD +S++VVAQLLFL+SE+ +
Sbjct: 3 TINSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDYISNLVVAQLLFLESENPE 62
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K I +YINSPGG +TSGL IYDTMQ++ P ++T C+GQA SM SLLLA G +G R +L N
Sbjct: 63 KDISIYINSPGGVITSGLAIYDTMQFIAPEVSTLCIGQAASMGSLLLAGGAEGKRFALTN 122
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
SRIMIHQP GG GQA
Sbjct: 123 SRIMIHQPLGGFS---------------------GQAS---------------------- 139
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
D +I A+E++ +K+++N + KHTG +++K+ + T
Sbjct: 140 ---------------DFEIHAKEMLLVKQKVNEILSKHTGKTLKKVEQDT 174
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 35/42 (83%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
T++ LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ Y
Sbjct: 3 TINSGLVPMVVEQTPRGERAFDIYSRLLKERIIFLTGPIDDY 44
>gi|378825565|ref|YP_005188297.1| ATP-dependent Clp protease, proteolytic subunit [Sinorhizobium
fredii HH103]
gi|365178617|emb|CCE95472.1| ATP-dependent Clp protease, proteolytic subunit [Sinorhizobium
fredii HH103]
Length = 210
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YV+H G + E++ ++
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVRHCGRTYEEVEQT 176
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMAT 50
>gi|336124548|ref|YP_004566596.1| ClpP [Vibrio anguillarum 775]
gi|365538382|ref|ZP_09363557.1| ATP-dependent Clp protease proteolytic subunit [Vibrio ordalii ATCC
33509]
gi|335342271|gb|AEH33554.1| ClpP [Vibrio anguillarum 775]
Length = 208
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|261253459|ref|ZP_05946032.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|417955962|ref|ZP_12598960.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|260936850|gb|EEX92839.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
gi|342811482|gb|EGU46519.1| ATP-dependent Clp protease proteolytic subunit [Vibrio orientalis
CIP 102891 = ATCC 33934]
Length = 208
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|261210563|ref|ZP_05924856.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
gi|262404275|ref|ZP_06080830.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
gi|424591588|ref|ZP_18031015.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1037(10)]
gi|260840348|gb|EEX66919.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC341]
gi|262349307|gb|EEY98445.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. RC586]
gi|408031447|gb|EKG68069.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae CP1037(10)]
Length = 208
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 144/250 (57%), Gaps = 59/250 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFW 283
+DIQI A+EI+ +K ++N L +HTG +E I + T ++ D + +
Sbjct: 147 ---------SDIQIHAQEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSADQAVEYG 197
Query: 284 INGLYVKHTG 293
+ +KH G
Sbjct: 198 LVDAVLKHRG 207
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|120599414|ref|YP_963988.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
W3-18-1]
gi|146292590|ref|YP_001183014.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
putrefaciens CN-32]
gi|386313267|ref|YP_006009432.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
gi|166214710|sp|A4Y5I2.1|CLPP_SHEPC RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214712|sp|A1RL89.1|CLPP_SHESW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|120559507|gb|ABM25434.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
W3-18-1]
gi|145564280|gb|ABP75215.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens CN-32]
gi|319425892|gb|ADV53966.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Shewanella
putrefaciens 200]
Length = 202
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQNALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDT 177
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER+YDIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQNALVPMVIEQTAKGERSYDIYSRLLKERIIFLVGQVE 45
>gi|114777030|ref|ZP_01452050.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
ferrooxydans PV-1]
gi|114552551|gb|EAU55011.1| ATP-dependent Clp protease proteolytic subunit [Mariprofundus
ferrooxydans PV-1]
Length = 207
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 133/239 (55%), Gaps = 58/239 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQT RGERAYDI+SRLL+ERI+ + G +DD +++++AQLLFL+SE K I+M
Sbjct: 3 LVPTVVEQTSRGERAYDIFSRLLKERIVFLNGQVDDHTANLIIAQLLFLESEGPDKDIYM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ ++T C+GQA SM + LLA+G G R SLPNSRIMI
Sbjct: 63 YINSPGGVVTSGLAIYDTMQYIRCDVSTLCIGQAASMGAHLLASGAPGKRFSLPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283
TDI+I A EI++LK ++N + KHTG IEK+ Y L C +
Sbjct: 134 ---------TDIEIHAREILSLKNRLNEMMAKHTGQPIEKLADDVERDYFLTADQACEY 183
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP V+EQT RGERAYDI+SRLL+ERI+ + G V
Sbjct: 3 LVPTVVEQTSRGERAYDIFSRLLKERIVFLNGQVD 37
>gi|424033222|ref|ZP_17772637.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-01]
gi|408874956|gb|EKM14118.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae HENC-01]
Length = 200
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 68 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 139 ---------SDIQIHAQEILTIKQKLNNLLAEHTGQPLEVIERDT 174
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|338739742|ref|YP_004676704.1| ATP-dependent Clp protease, proteolytic subunit [Hyphomicrobium sp.
MC1]
gi|337760305|emb|CCB66136.1| ATP-dependent Clp protease, proteolytic subunit [Hyphomicrobium sp.
MC1]
Length = 217
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 133/229 (58%), Gaps = 58/229 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
TL+ P+V+EQT RGER YD+ SRLL+ERII V GP++D +++ + QLLFL+SE+ K
Sbjct: 7 TLTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVEDHMAASICMQLLFLESENPK 66
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K I MYINSPGG VT+G+ IYDTMQ+V P +AT C+GQA SM SLLL AG KGMR++LPN
Sbjct: 67 KEISMYINSPGGVVTAGMAIYDTMQFVKPAVATLCIGQAASMGSLLLCAGAKGMRYALPN 126
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
+R+M+HQPSGG GQA
Sbjct: 127 ARVMVHQPSGGFS---------------------GQASD--------------------- 144
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
I+ AE+II +K+++N YVKHTG + E + K+
Sbjct: 145 ----------------IERHAEDIIKMKRRLNETYVKHTGQTYEMVDKT 177
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
TL+ P+V+EQT RGER YD+ SRLL+ERII V GPV
Sbjct: 7 TLTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVE 46
>gi|224824981|ref|ZP_03698087.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pseudogulbenkiania ferrooxidans 2002]
gi|347540404|ref|YP_004847829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pseudogulbenkiania sp. NH8B]
gi|224602652|gb|EEG08829.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pseudogulbenkiania ferrooxidans 2002]
gi|345643582|dbj|BAK77415.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pseudogulbenkiania sp. NH8B]
Length = 207
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GP+ D +++VVAQ+LFL+SE+ K I+
Sbjct: 12 LVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLESENPDKDIYF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTM ++ P ++T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 72 YINSPGGSVSAGMSIFDTMNFIKPDVSTLCIGQAASMGAFLLSAGAKGKRFALPNSRIMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+ I+ +K+++N L HTG SIE+I + T
Sbjct: 143 ---------SDFEIHAKNILYMKRRLNELLALHTGRSIEEIERDT 178
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GPV+
Sbjct: 12 LVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVT 46
>gi|94987236|ref|YP_595169.1| protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|442556076|ref|YP_007365901.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
gi|116243147|sp|Q1MQ79.1|CLPP_LAWIP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|94731485|emb|CAJ54848.1| Protease subunit of ATP-dependent Clp proteases [Lawsonia
intracellularis PHE/MN1-00]
gi|441493523|gb|AGC50217.1| ATP-dependent Clp protease, proteolytic subunit [Lawsonia
intracellularis N343]
Length = 209
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 144/254 (56%), Gaps = 60/254 (23%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+E GR ERAYDIYSRLL++RI+ + ++D ++S++ AQLLFL+S+ +K I++Y
Sbjct: 9 VPIVVENNGRNERAYDIYSRLLKDRIVLLGTEVNDQVASLICAQLLFLESQDPEKEIYLY 68
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+GL IYDTM Y+ P +AT C+G+A SM +LLLAAGEK MR++LPNS++MIH
Sbjct: 69 INSPGGSVTAGLAIYDTMNYITPNVATVCMGRAASMGALLLAAGEKNMRYALPNSQVMIH 128
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 129 QPLGGYQ---------------------GQA----------------------------- 138
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL--HDPYICFW 283
TDI I A EI+ +++++N + ++ TG S+EK+ + T Y + D
Sbjct: 139 --------TDIDIHAREILRMRQRLNEILMEQTGQSLEKVAQDTERDYFMTAEDAKAYGL 190
Query: 284 INGLYVKHTGLSIE 297
I+ + V L IE
Sbjct: 191 IDKVLVSRKDLDIE 204
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
VPIV+E GR ERAYDIYSRLL++RI+ +
Sbjct: 9 VPIVVENNGRNERAYDIYSRLLKDRIVLL 37
>gi|384228448|ref|YP_005620183.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
gi|345539381|gb|AEO08248.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Ua (Uroleucon ambrosiae)]
Length = 204
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 138/235 (58%), Gaps = 60/235 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VP+VIE+ RGER+YDIYSRLL+ERII + GPI+D++++ +VAQ+LFL+SE K I +
Sbjct: 14 FVPMVIEEHSRGERSYDIYSRLLKERIIFITGPIEDNMANNIVAQILFLESEQPDKDIFL 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ+V I+T C+GQACSMA+LLL +G+KG R LPNS++MI
Sbjct: 74 YINSPGGIITAGMSIYDTMQFVKSDISTICIGQACSMAALLLTSGKKGKRFCLPNSKVMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 134 HQPLGGYK---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV--CFYVLHD 277
+DI I A EI+++KK++N L HTG SI+KI K T CF H+
Sbjct: 145 ---------SDIAIHAREIMDMKKKLNKLMSFHTGQSIKKINKDTERDCFLSAHE 190
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+VIE+ RGER+YDIYSRLL+ERII + GP+
Sbjct: 14 FVPMVIEEHSRGERSYDIYSRLLKERIIFITGPIE 48
>gi|71066496|ref|YP_265223.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
arcticus 273-4]
gi|110816464|sp|Q4FQB9.1|CLPP_PSYA2 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71039481|gb|AAZ19789.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
arcticus 273-4]
Length = 225
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 145/259 (55%), Gaps = 67/259 (25%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H +T LVP+V+EQ+ RGER++DI+SRLLRER+I + G ++D +++++VAQLLFL++
Sbjct: 22 HVQSTTQSALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLEA 81
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ K IH+YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S LLAAG+KG R+
Sbjct: 82 ENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGQKGKRY 141
Query: 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 215
+L N+R+MIHQPSGG Q GQA
Sbjct: 142 ALANARVMIHQPSGGAQ---------------------GQA------------------- 161
Query: 216 PNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A EI+ + ++N + + TG S+EKI K
Sbjct: 162 ------------------TDIEINAREILKTRARLNEILAERTGQSVEKIEK-------- 195
Query: 276 HDPYICFWINGLYVKHTGL 294
D +W++ K GL
Sbjct: 196 -DVERDYWLDAKEAKEYGL 213
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H +T LVP+V+EQ+ RGER++DI+SRLLRER+I + G V
Sbjct: 22 HVQSTTQSALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVE 65
>gi|300023469|ref|YP_003756080.1| endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
gi|299525290|gb|ADJ23759.1| Endopeptidase Clp [Hyphomicrobium denitrificans ATCC 51888]
Length = 217
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 132/229 (57%), Gaps = 58/229 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
T++ P+V+EQT RGER YD+ SRLL+ERII V GP++D +++ + QLLFL+SE+ K
Sbjct: 7 TVTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVEDHMAASICMQLLFLESENPK 66
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K I MYINSPGG VT+G+ IYDTMQ+V PP+AT C+GQA SM SLLL AG K MR +LPN
Sbjct: 67 KEISMYINSPGGVVTAGMAIYDTMQFVKPPVATLCIGQAASMGSLLLCAGAKDMRFALPN 126
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
+RIM+HQPSGG GQA
Sbjct: 127 ARIMVHQPSGGFS---------------------GQASD--------------------- 144
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
I+ AE+II +K+++N YVKHTG S E I K+
Sbjct: 145 ----------------IERHAEDIIKMKRRLNETYVKHTGQSYEMIEKT 177
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
T++ P+V+EQT RGER YD+ SRLL+ERII V GPV
Sbjct: 7 TVTNTFWPMVVEQTTRGERGYDLPSRLLKERIIFVTGPVE 46
>gi|429743956|ref|ZP_19277482.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
gi|429164090|gb|EKY06250.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Neisseria sp. oral taxon 020 str. F0370]
Length = 211
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GP++D +++VVAQ+LFL+SE+ K I +
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDDTANLVVAQMLFLESENPDKDIFL 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ ++DTM ++ P ++T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 70 YINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I +K+++N KHTG +EKI + T
Sbjct: 144 ----------DIEIHARELIKIKQKLNEFLAKHTGQPLEKIERDT 178
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVN 44
>gi|315122830|ref|YP_004063319.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313496232|gb|ADR52831.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 216
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/259 (40%), Positives = 150/259 (57%), Gaps = 62/259 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G I+D +++++ AQLLFL++E+ +K I +
Sbjct: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFITGQIEDHMAALICAQLLFLEAENPQKEISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ PP++T C+GQA SM SLLLAAG+KGMR +LPN+RIM+
Sbjct: 78 YINSPGGVVTAGMAIYDTMQFIKPPVSTLCIGQAASMGSLLLAAGKKGMRFALPNARIML 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG GQA + RH
Sbjct: 138 HQPSGGFS---------------------GQASDIE-----------RH----------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS--TVCFYVLHDPYICF 282
A +II +K ++N +YVKH G E++ ++ CF D +
Sbjct: 155 ---------------ARDIIKIKHRLNNIYVKHCGRVYEEVEQTLDRDCFMSAEDAHAWG 199
Query: 283 WINGLYVKHTGLSIEKIGK 301
I+ + + + IE+ GK
Sbjct: 200 LIDKVLMSR--VDIEEGGK 216
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERI+ + G +
Sbjct: 18 LVPMVVEQTNRGERSYDIYSRLLKERIVFITGQIE 52
>gi|383935029|ref|ZP_09988467.1| ATP-dependent Clp protease, protease subunit [Rheinheimera
nanhaiensis E407-8]
gi|383703794|dbj|GAB58558.1| ATP-dependent Clp protease, protease subunit [Rheinheimera
nanhaiensis E407-8]
Length = 207
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/234 (43%), Positives = 139/234 (59%), Gaps = 58/234 (24%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H + LVPIVIEQT +GER++DIYSRLL+ER+I + G ++D +++++VAQLLFL+S
Sbjct: 5 QHLNDIVNALVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLES 64
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ +K I++YINSPGGSVT+GL IYDTM+Y+ P IAT CVGQA SM + LL+ G KG R+
Sbjct: 65 ENPEKDIYIYINSPGGSVTAGLSIYDTMRYIKPDIATVCVGQAASMGAFLLSGGTKGKRY 124
Query: 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 215
LPN+R+MIHQP GG Q GQA
Sbjct: 125 CLPNARVMIHQPLGGFQ---------------------GQA------------------- 144
Query: 216 PNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD +I A EI+++K+++N L +H+G S E++ K T
Sbjct: 145 ------------------TDFEIHAREILSIKEKLNRLMAEHSGKSYEQVCKDT 180
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H + LVPIVIEQT +GER++DIYSRLL+ER+I + G V
Sbjct: 5 QHLNDIVNALVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVE 48
>gi|218961379|ref|YP_001741154.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans]
gi|167730036|emb|CAO80948.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Candidatus Cloacamonas acidaminovorans str.
Evry]
Length = 194
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIVIEQ GR ERAYDIYSRLL++RI+ V G I+D+L++ VVAQLL L+ E ++ I+M
Sbjct: 3 FVPIVIEQVGRTERAYDIYSRLLKDRIVFVGGVIEDNLANTVVAQLLHLEGEDPERDIYM 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +++GL IYDTMQY+ P ++T C+GQA SMA++LLAAG G R +LPNSRIMI
Sbjct: 63 YINSPGGIISAGLAIYDTMQYIKPRVSTICIGQAASMAAVLLAAGAPGKRSALPNSRIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPMGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+IQA+EI+ L+ ++N + KH+G SIEKI + T Y +
Sbjct: 134 ---------TDIEIQAKEILYLRGRMNEILHKHSGQSIEKIMEDTERNYFM 175
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFANDSICKCCH 433
VPIVIEQ GR ERAYDIYSRLL++RI+ V G I + AN + + H
Sbjct: 3 FVPIVIEQVGRTERAYDIYSRLLKDRIVFVGG-----VIEDNLANTVVAQLLH 50
>gi|238023189|ref|ZP_04603615.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
gi|237865572|gb|EEP66712.1| hypothetical protein GCWU000324_03115 [Kingella oralis ATCC 51147]
Length = 206
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GP++D +++VVAQLLFL+SE+ K I+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDHTANLVVAQLLFLESENPDKDIYF 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTM+++ P + T C+GQA SM + LL+AG KG R +LPNSR+MI
Sbjct: 70 YINSPGGSVTAGMSIYDTMKFIKPDVQTLCLGQAASMGAFLLSAGTKGKRFALPNSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E++ LK+++N + +HTG S+E+I + T
Sbjct: 144 ----------DIEIHARELLKLKEKLNQMLAEHTGKSLEQIERDT 178
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVN 44
>gi|153006264|ref|YP_001380589.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
gi|166201797|sp|A7HFV9.1|CLPP_ANADF RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|152029837|gb|ABS27605.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Anaeromyxobacter sp. Fw109-5]
Length = 204
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 131/230 (56%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P V+EQT RGER+YDIYSRLL++RI+ + PIDD +++VV+AQLLFL+SE K I +Y
Sbjct: 6 MPYVVEQTHRGERSYDIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVTSGL IYDTMQYV P ++T C+GQA SM + LLA G G R ++PN+RIMIH
Sbjct: 66 INSPGGSVTSGLAIYDTMQYVKPQVSTICLGQAASMGAFLLAGGAAGKRFAVPNARIMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 126 QPMGGFQ---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI IQA EI+ LK ++N + KHT +E+I K T Y +
Sbjct: 136 --------TDIDIQAREILRLKAKLNDILAKHTKQPLERIEKDTDRDYFM 177
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P V+EQT RGER+YDIYSRLL++RI+ + P+
Sbjct: 6 MPYVVEQTHRGERSYDIYSRLLKDRIVFLGTPID 39
>gi|78066693|ref|YP_369462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
383]
gi|167586932|ref|ZP_02379320.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
ubonensis Bu]
gi|90101404|sp|Q39FE8.1|CLPP_BURS3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|77967438|gb|ABB08818.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
sp. 383]
Length = 217
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNQLLAQHTGQDVERIARDT 192
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 60
>gi|258621302|ref|ZP_05716336.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM573]
gi|258625374|ref|ZP_05720271.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM603]
gi|262166052|ref|ZP_06033789.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM223]
gi|262171083|ref|ZP_06038761.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
MB-451]
gi|424807155|ref|ZP_18232563.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
mimicus SX-4]
gi|449144449|ref|ZP_21775264.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus CAIM
602]
gi|258582365|gb|EEW07217.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM603]
gi|258586690|gb|EEW11405.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM573]
gi|261892159|gb|EEY38145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
MB-451]
gi|262025768|gb|EEY44436.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus
VM223]
gi|342325097|gb|EGU20877.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
mimicus SX-4]
gi|449079950|gb|EMB50869.1| ATP-dependent Clp protease proteolytic subunit [Vibrio mimicus CAIM
602]
Length = 208
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 144/250 (57%), Gaps = 59/250 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFW 283
+DIQI A+EI+ +K ++N L +HTG +E I + T ++ D + +
Sbjct: 147 ---------SDIQIHAKEILTIKNKLNRLLAEHTGQPLEVIERDTDRDNFMSADQAVEYG 197
Query: 284 INGLYVKHTG 293
+ +KH G
Sbjct: 198 LVDAVLKHRG 207
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|227821606|ref|YP_002825576.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
fredii NGR234]
gi|227340605|gb|ACP24823.1| ATP-dependent Clp protease proteolytic subunit [Sinorhizobium
fredii NGR234]
Length = 210
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + GP++D ++++V AQLLFL++E+ KK I +
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMATLVCAQLLFLEAENPKKEIAL 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQ++ P ++T C+GQA SM SLLLAAG K MR + PN+RIM+
Sbjct: 71 YINSPGGVVTAGMAIYDTMQFIKPAVSTLCIGQAASMGSLLLAAGHKDMRFATPNARIMV 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 131 HQPSGGFQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI+ A +I+ +K+++N +YV+H G + E++ ++
Sbjct: 142 ---------SDIERHARDILKMKRRLNEVYVRHCGRTYEEVEQT 176
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPIT 420
LVP+V+EQT RGER+YDIYSRLL+ERII + GPV + T
Sbjct: 11 LVPMVVEQTNRGERSYDIYSRLLKERIIFLTGPVEDHMAT 50
>gi|375264871|ref|YP_005022314.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. EJY3]
gi|369840195|gb|AEX21339.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. EJY3]
Length = 208
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|91228617|ref|ZP_01262535.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 12G01]
gi|254229904|ref|ZP_04923307.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
Ex25]
gi|262394815|ref|YP_003286669.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
gi|269965580|ref|ZP_06179694.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 40B]
gi|451970181|ref|ZP_21923408.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus E0666]
gi|91187849|gb|EAS74163.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 12G01]
gi|151937540|gb|EDN56395.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio sp.
Ex25]
gi|262338409|gb|ACY52204.1| ATP-dependent Clp protease proteolytic subunit [Vibrio sp. Ex25]
gi|269829805|gb|EEZ84040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus 40B]
gi|451933695|gb|EMD81362.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
alginolyticus E0666]
Length = 208
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKQKLNKLLAEHTGQPLEVIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|24373360|ref|NP_717403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
oneidensis MR-1]
gi|60389791|sp|Q8EG19.1|CLPP_SHEON RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|24347620|gb|AAN54847.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
oneidensis MR-1]
Length = 202
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 138/235 (58%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDT 177
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVE 45
>gi|167562414|ref|ZP_02355330.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
oklahomensis EO147]
gi|167569597|ref|ZP_02362471.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
oklahomensis C6786]
Length = 207
Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 136 HQPLGGAR---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK ++N L +HTG +E+I + T
Sbjct: 147 ---------SDIEIQAREILYLKDRLNHLLAQHTGQDVERIARDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 50
>gi|445496993|ref|ZP_21463848.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
gi|444786988|gb|ELX08536.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Janthinobacterium sp. HH01]
Length = 208
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 83/128 (64%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGER+YDIYSRLL+ER+I ++GP++D +++++VAQLLFL+SE+ K I +
Sbjct: 17 LVPMVVEQSGRGERSYDIYSRLLKERVIFMVGPVNDQMANLIVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL I+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMI
Sbjct: 77 YINSPGGSVSAGLAIFDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMI 136
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 137 HQPSGGSQ 144
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 2/152 (1%)
Query: 120 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM--IHQPSGGVQVGLGI 177
YD +L + VG + L+ A + P+ I I+ P G V GL I
Sbjct: 32 YDIYSRLLKERVIFMVGPVNDQMANLIVAQLLFLESENPDKDISLYINSPGGSVSAGLAI 91
Query: 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQ 237
+DTMQ++ P ++T C G A SM + LLAAG KG R SLPNSRIMIHQPSGG QG A+DI+
Sbjct: 92 FDTMQFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSRIMIHQPSGGSQGMASDIE 151
Query: 238 IQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
IQA+EI+ L+ ++N + + TG S+E+I K T
Sbjct: 152 IQAKEILYLRHRLNSIMAERTGQSVEQIAKDT 183
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 17 LVPMVVEQSGRGERSYDIYSRLLKERVIFMVGPVN 51
>gi|317492909|ref|ZP_07951333.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365835459|ref|ZP_09376878.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Hafnia
alvei ATCC 51873]
gi|316919031|gb|EFV40366.1| Clp protease [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364566034|gb|EHM43738.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Hafnia
alvei ATCC 51873]
Length = 206
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K IH+
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 75 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 135 HQPLGGFQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KH+G +E+I + T
Sbjct: 146 ---------TDIEIHAKEILKVKARMNELMAKHSGKPLEEIERDT 181
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 15 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 49
>gi|115311358|sp|Q2SK36.2|CLPP_HAHCH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 204
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 140/230 (60%), Gaps = 59/230 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
++ LVP+V+EQT RGER+YDIYSRLL+ERII ++G ++D ++++VVAQLLFL+SE+ K
Sbjct: 6 IANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVEDHMANLVVAQLLFLESENPDK 65
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
IH+YINSPGGSVT+GL IYDTMQ++ P ++T C+GQA SM +LLL+ G G R+ LP+S
Sbjct: 66 DIHLYINSPGGSVTAGLSIYDTMQFIKPDVSTMCIGQAASMGALLLSGGAAGKRYCLPHS 125
Query: 161 RIMIHQP-SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
R+MIHQP GG+Q GQA
Sbjct: 126 RVMIHQPLLGGLQ---------------------GQA----------------------- 141
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ L++++N + KHTG IE I + T
Sbjct: 142 --------------SDIEIHAKEILLLREKLNNILSKHTGQDIETIARDT 177
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ LVP+V+EQT RGER+YDIYSRLL+ERII ++G V
Sbjct: 6 IANALVPMVVEQTARGERSYDIYSRLLKERIIFLVGQVE 44
>gi|294101895|ref|YP_003553753.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
gi|293616875|gb|ADE57029.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Aminobacterium colombiense DSM 12261]
Length = 193
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQ+GRGERAYDIYSRLL++RII + IDD +++ VVAQLLFL+SE K IH+
Sbjct: 2 LIPMVIEQSGRGERAYDIYSRLLKDRIIFLGQEIDDPIANTVVAQLLFLESEDPDKDIHL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG ++SGL IYDTMQY+ P++T C+GQA SMA++LLA G G R +LPN+R+MI
Sbjct: 62 YINSPGGVISSGLAIYDTMQYIKSPVSTICIGQAASMAAVLLAGGAPGKRIALPNARVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG GQA
Sbjct: 122 HQPLGGAH---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ ++++IN + VKHTG + ++I T
Sbjct: 133 ---------TDIEIHAKEILKIREKINDILVKHTGQTRKRIKADT 168
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 28/28 (100%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
L+P+VIEQ+GRGERAYDIYSRLL++RII
Sbjct: 2 LIPMVIEQSGRGERAYDIYSRLLKDRII 29
>gi|227824397|ref|ZP_03989229.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|352683492|ref|YP_004895475.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
gi|226904896|gb|EEH90814.1| ATP-dependent Clp protease [Acidaminococcus sp. D21]
gi|350278145|gb|AEQ21335.1| ATP-dependent Clp protease [Acidaminococcus intestini RyC-MR95]
Length = 199
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQT +GER+YDIYSRLL++RII V G I+D +++++VAQLLFL+SE K IH+Y
Sbjct: 7 VPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIEDHMANLIVAQLLFLESEDPDKDIHLY 66
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSV++GL IYDTMQY+ P ++T CVG A SMAS+LLAAG KG R +LP+SR+MIH
Sbjct: 67 INSPGGSVSAGLAIYDTMQYIRPDVSTICVGMAASMASILLAAGAKGKRFALPHSRVMIH 126
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 127 QPLGGAQ---------------------GQA----------------------------- 136
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +++++N + HTG E I T
Sbjct: 137 --------TDIEIHAREILRVREEMNQILAAHTGKDPETIKLDT 172
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQT +GER+YDIYSRLL++RII V G +
Sbjct: 7 VPIVVEQTSKGERSYDIYSRLLKDRIIFVTGEIE 40
>gi|410612507|ref|ZP_11323584.1| ATP-dependent Clp protease, protease subunit [Glaciecola
psychrophila 170]
gi|410167848|dbj|GAC37473.1| ATP-dependent Clp protease, protease subunit [Glaciecola
psychrophila 170]
Length = 214
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 138/228 (60%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
+ LVP+V+EQT +GER+YDIYSRLL+E +I ++G ++D +++++VAQLLFL++E+ +K
Sbjct: 9 TNALVPMVVEQTAKGERSYDIYSRLLKENVIFLVGQVEDHMANLIVAQLLFLEAENPEKD 68
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I +YINSPGGSVT+G+ IYDTM ++ P ++T C+GQA SM + LL+AGEKG R+ LPNSR
Sbjct: 69 IFLYINSPGGSVTAGMAIYDTMNFIKPNVSTVCIGQAASMGAFLLSAGEKGKRYCLPNSR 128
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+MIHQP GG Q GQA
Sbjct: 129 VMIHQPLGGFQ---------------------GQA------------------------- 142
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+++K+++N L KHTG EK+ + T
Sbjct: 143 ------------SDFEIHAKEILSIKEKMNRLMAKHTGQEYEKVAQDT 178
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 31/38 (81%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT +GER+YDIYSRLL+E +I ++G V
Sbjct: 9 TNALVPMVVEQTAKGERSYDIYSRLLKENVIFLVGQVE 46
>gi|34498013|ref|NP_902228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
violaceum ATCC 12472]
gi|60389718|sp|Q7NUY9.1|CLPP_CHRVO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|34103868|gb|AAQ60228.1| ATP-dependent Clp protease proteolytic subunit [Chromobacterium
violaceum ATCC 12472]
Length = 210
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 133/225 (59%), Gaps = 55/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GP+ D +++VVAQ+LFL+SE+ K IH
Sbjct: 12 LVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVTDESANLVVAQMLFLESENPDKDIHF 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTM ++ P ++T C+GQA SM + LLAAG G R +L NSR+MI
Sbjct: 72 YINSPGGSITAGMSIYDTMNFIKPDVSTLCIGQAASMGAFLLAAGTHGKRFALENSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP LL G
Sbjct: 132 HQP----------------------------------LLYGGG----------------- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+ GQ TDI+I A E++ +K ++N L KH+G ++E++ T
Sbjct: 141 ----LSGQVTDIEIHARELVKVKAKMNELLAKHSGQTLERVQSDT 181
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ERI+ ++GPV+
Sbjct: 12 LVPMVVEQSGRGERAYDIYSRLLKERIVFLVGPVT 46
>gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
CMCP6]
gi|37679288|ref|NP_933897.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
YJ016]
gi|320156969|ref|YP_004189348.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
MO6-24/O]
gi|27359628|gb|AAO08567.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
vulnificus CMCP6]
gi|37198031|dbj|BAC93868.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus
YJ016]
gi|319932281|gb|ADV87145.1| ATP-dependent Clp protease proteolytic subunit [Vibrio vulnificus
MO6-24/O]
Length = 208
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L +HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|417839806|ref|ZP_12485973.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M19107]
gi|341951681|gb|EGT78241.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M19107]
Length = 193
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE + K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDATKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|294141768|ref|YP_003557746.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
violacea DSS12]
gi|293328237|dbj|BAJ02968.1| ATP-dependent Clp protease, proteolytic subunit [Shewanella
violacea DSS12]
Length = 203
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ERII ++GP+++ ++++VVAQLLFL+SES K I +
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVEEHMANLVVAQLLFLESESPDKDIFL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G G RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPDVSTVCIGQAASMGAFLLAGGAAGKRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKNKLNEMLAEHTGQPLEVIERDT 178
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ERII ++GPV
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERIIFLVGPVE 46
>gi|347753754|ref|YP_004861318.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum B]
gi|347586272|gb|AEP10802.1| ATP-dependent Clp protease proteolytic subunit ClpP [Candidatus
Chloracidobacterium thermophilum B]
Length = 199
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 132/221 (59%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLL++ II + PIDD+++S+VVAQLLFL+SE ++ I +
Sbjct: 8 LVPMVIEQTSRGERAYDIYSRLLKDNIIFIGTPIDDTVASLVVAQLLFLESEDPERDISI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ+V P I T+C+GQ SM +LLLAAG KG R++LP+SRI+I
Sbjct: 68 YINSPGGSVTAGMAIYDTMQFVKPDIVTFCIGQCASMGALLLAAGTKGKRYALPHSRILI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 128 HQPSGGAQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI +++ + + KHTG E I
Sbjct: 139 ---------TDILIQAEEIKRIRELTSNILAKHTGKPFEVI 170
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLL++ II + P+
Sbjct: 8 LVPMVIEQTSRGERAYDIYSRLLKDNIIFIGTPID 42
>gi|347528435|ref|YP_004835182.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
gi|345137116|dbj|BAK66725.1| ATP-dependent Clp protease proteolytic subunit [Sphingobium sp.
SYK-6]
Length = 211
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/128 (69%), Positives = 107/128 (83%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQ+ RGER++DIYSRLLRERII V G ++D ++S++VAQLLFL+SE+ KK I M
Sbjct: 12 LVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLIVAQLLFLESENPKKDIWM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ I+DTMQY+ P + T C+GQA SM S LLAAGE GMR +L N+RIMI
Sbjct: 72 YINSPGGVVTSGMAIHDTMQYIRPKVGTVCIGQAASMGSFLLAAGEPGMRFALSNARIMI 131
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 132 HQPSGGAQ 139
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 80/102 (78%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ I+DTMQY+ P + T C+GQA SM S LLAAGE GMR +L N+RIMIH
Sbjct: 73 INSPGGVVTSGMAIHDTMQYIRPKVGTVCIGQAASMGSFLLAAGEPGMRFALSNARIMIH 132
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
QPSGG QG A+DI+IQA+EI+ +++++N LYVK+TG ++KI
Sbjct: 133 QPSGGAQGMASDIEIQAKEILRIRRRLNDLYVKYTGQPLDKI 174
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQ+ RGER++DIYSRLLRERII V G V
Sbjct: 12 LVPIVIEQSNRGERSFDIYSRLLRERIIFVTGQVE 46
>gi|338999443|ref|ZP_08638086.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. TD01]
gi|338763592|gb|EGP18581.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp. TD01]
Length = 205
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLESENPDKDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL AG G R+ LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFIKPDVSTVCIGQAASMGALLLTAGAAGKRYCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+ +++++N + HTG +E + + T
Sbjct: 143 ---------SDIEIHTREILGIREKLNQILAHHTGQDLEAVARDT 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDY 48
>gi|313894919|ref|ZP_07828479.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|402301976|ref|ZP_10821097.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
gi|312976600|gb|EFR42055.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. oral taxon 137 str. F0430]
gi|400381261|gb|EJP34064.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC9]
Length = 205
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 107/127 (84%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDDS+++VVVAQ+LFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LL AG KG R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKGKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|270263570|ref|ZP_06191839.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
odorifera 4Rx13]
gi|333925889|ref|YP_004499468.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. AS12]
gi|333930842|ref|YP_004504420.1| ATP-dependent Clp protease proteolytic subunit [Serratia plymuthica
AS9]
gi|386327713|ref|YP_006023883.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. AS13]
gi|421781988|ref|ZP_16218448.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
plymuthica A30]
gi|270042454|gb|EFA15549.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
odorifera 4Rx13]
gi|333472449|gb|AEF44159.1| ATP-dependent Clp protease proteolytic subunit [Serratia plymuthica
AS9]
gi|333489949|gb|AEF49111.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. AS12]
gi|333960046|gb|AEG26819.1| ATP-dependent Clp protease proteolytic subunit [Serratia sp. AS13]
gi|407755862|gb|EKF65985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
plymuthica A30]
Length = 207
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG ++E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAEHTGQTLEQIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|253990891|ref|YP_003042247.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
heat shock protein F21.5 [Photorhabdus asymbiotica]
gi|253782341|emb|CAQ85505.1| ATP-dependent proteolytic subunit of clpA-ClpP serine protease,
heat shock protein F21.5 [Photorhabdus asymbiotica]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 16 LVPMVIEQTARGERSFDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAEGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +K ++N L KHTG S+E+I K T
Sbjct: 147 ---------SDIEIHAQEILKVKGRMNSLMAKHTGKSLEEIEKDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ERII + G V
Sbjct: 16 LVPMVIEQTARGERSFDIYSRLLKERIIFLTGQVE 50
>gi|149186485|ref|ZP_01864797.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
gi|148829712|gb|EDL48151.1| ATP-dependent Clp protease [Erythrobacter sp. SD-21]
Length = 241
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQ+ RGERA+DI+SRLLRERI+ V G ++D+++S++VAQLLFL+SE+ KPI M
Sbjct: 29 LVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVEDTMASLIVAQLLFLESENPSKPISM 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+
Sbjct: 89 YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMV 148
Query: 165 HQPSGGVQ 172
HQPSGG +
Sbjct: 149 HQPSGGAR 156
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP V+EQ+ RGERA+DI+SRLLRERI+ V G V
Sbjct: 29 LVPTVVEQSSRGERAFDIFSRLLRERIVFVTGQVE 63
>gi|332160749|ref|YP_004297326.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|386309498|ref|YP_006005554.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418242377|ref|ZP_12868889.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|433550574|ref|ZP_20506618.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica IP 10393]
gi|318604628|emb|CBY26126.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325664979|gb|ADZ41623.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330859950|emb|CBX70279.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica W22703]
gi|351778211|gb|EHB20378.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. palearctica PhRBD_Ye1]
gi|431789709|emb|CCO69658.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica IP 10393]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++ AQ+LFL++E+ +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG S+E+I + T
Sbjct: 147 ---------TDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDT 182
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 50
>gi|161524522|ref|YP_001579534.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
multivorans ATCC 17616]
gi|189350722|ref|YP_001946350.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
multivorans ATCC 17616]
gi|221198217|ref|ZP_03571263.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2M]
gi|221209201|ref|ZP_03582193.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2]
gi|254252156|ref|ZP_04945474.1| Peptidase S14 [Burkholderia dolosa AUO158]
gi|416986795|ref|ZP_11938505.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
TJI49]
gi|124894765|gb|EAY68645.1| Peptidase S14 [Burkholderia dolosa AUO158]
gi|160341951|gb|ABX15037.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans ATCC 17616]
gi|189334744|dbj|BAG43814.1| ATP-dependent Clp protease [Burkholderia multivorans ATCC 17616]
gi|221170939|gb|EEE03394.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2]
gi|221182149|gb|EEE14550.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD2M]
gi|325518991|gb|EGC98514.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia sp.
TJI49]
Length = 217
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNHLLAQHTGQDVERIARDT 192
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 60
>gi|395232657|ref|ZP_10410907.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
Ag1]
gi|394733059|gb|EJF32698.1| ATP-dependent Clp protease proteolytic subunit [Enterobacter sp.
Ag1]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L +HTG S+E+I K T
Sbjct: 147 ---------TDIEIHAKEILKVKARMNELMAEHTGKSLEQIEKDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|15617073|ref|NP_240286.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|11386686|sp|P57547.1|CLPP_BUCAI RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|25289846|pir||D84985 endopeptidase Clp (EC 3.4.21.92) [imported] - Buchnera sp. (strain
APS)
gi|10039138|dbj|BAB13172.1| ATP-dependent clp protease proteolytic subunit [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
Length = 208
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 60/230 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P+V+EQ RGER+YDIYSRLL+ERII + G I+D++++ +VAQ+LFL++E+ +K I +
Sbjct: 17 FIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIVAQILFLEAENPEKDIFL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +TSG+ IYDTMQ+V P I+T C+GQACSMA+LLL +G KG R LPNS++MI
Sbjct: 77 YINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKGKRFCLPNSKVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGYQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV--CF 272
+DI I A EI+ +KK++N L HTG SI+KI K T CF
Sbjct: 148 ---------SDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERDCF 188
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+P+V+EQ RGER+YDIYSRLL+ERII + G +
Sbjct: 17 FIPMVVEQHSRGERSYDIYSRLLKERIIFITGAI 50
>gi|339021745|ref|ZP_08645737.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
gi|338751241|dbj|GAA09041.1| Clp protease proteolytic subunit ClpP [Acetobacter tropicalis NBRC
101654]
Length = 234
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
S LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D ++S++ AQLL+L+S + K
Sbjct: 26 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVASLISAQLLYLESVNPTK 85
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEKG R++LPN+
Sbjct: 86 EISFYINSPGGVVSAGLAIYDTMQYIRSPVSTVCIGQAASMGSLLLAGGEKGHRYALPNA 145
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 146 RVMVHQPSGGAQ---------------------GQA------------------------ 160
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
+DI+IQA+EI+ +++++N +Y +HTG ++E I
Sbjct: 161 -------------SDIEIQAKEILIIRQRLNEIYREHTGQTLEDI 192
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 26 FSNALVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 63
>gi|123443342|ref|YP_001007316.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|420257505|ref|ZP_14760262.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. enterocolitica WA-314]
gi|2493738|sp|Q60107.1|CLPP_YEREN RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166214722|sp|A1JNN2.1|CLPP_YERE8 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|1377852|gb|AAC45782.1| ClpP [Yersinia enterocolitica]
gi|122090303|emb|CAL13169.1| ATP-dependent Clp protease proteolytic subunit ClpP [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|404515019|gb|EKA28797.1| ATP-dependent Clp protease proteolytic subunit [Yersinia
enterocolitica subsp. enterocolitica WA-314]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++ AQ+LFL++E+ +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLITAQMLFLEAENPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG S+E+I + T
Sbjct: 147 ---------TDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDT 182
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 50
>gi|393773236|ref|ZP_10361634.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
Rr 2-17]
gi|392721116|gb|EIZ78583.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
Rr 2-17]
Length = 221
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 108/128 (84%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLLRERI+ + G ++D ++S++VAQLLFL+SE+ K I M
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFITGAVEDHMASLIVAQLLFLESENPAKDISM 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+
Sbjct: 83 YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMV 142
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 143 HQPSGGAQ 150
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 83/105 (79%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+H
Sbjct: 84 INSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMVH 143
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
QPSGG QG A+DI+IQA EI+ +++++N LYVK+TG +++ I K+
Sbjct: 144 QPSGGAQGMASDIEIQAREILRMRRRLNDLYVKYTGKTLDAIEKA 188
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER++DIYSRLLRERI+ + G V
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFITGAVE 57
>gi|375111157|ref|ZP_09757368.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
jeotgali KCTC 22429]
gi|393762608|ref|ZP_10351235.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
agri BL06]
gi|397169840|ref|ZP_10493267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
aestuarii B11]
gi|374568699|gb|EHR39871.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
jeotgali KCTC 22429]
gi|392606843|gb|EIW89727.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
agri BL06]
gi|396088368|gb|EJI85951.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Alishewanella
aestuarii B11]
Length = 201
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT +GER++DIYSRLL+ER+I + G ++D +++++VAQLLFL+SE+ +K I++
Sbjct: 8 LVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLESENPEKDIYI 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM+Y+ P IAT CVGQA SM + LL+ G KG R+ LPN+R+MI
Sbjct: 68 YINSPGGSVTAGLSIYDTMRYIKPDIATVCVGQAASMGAFLLSGGTKGKRYCLPNARVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD +I A EI+++K+++N L +H+G S E++ K T
Sbjct: 139 ---------TDFEIHAREILSIKEKLNRLMAEHSGKSYEQVCKDT 174
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT +GER++DIYSRLL+ER+I + G V
Sbjct: 8 LVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVE 42
>gi|256074339|ref|XP_002573483.1| peptidase Clp (S14 family) [Schistosoma mansoni]
Length = 632
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 143/254 (56%), Gaps = 59/254 (23%)
Query: 15 SIILCPFIFQGLSLGHLA-KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIIC 73
S + C +FQ L+ K FH + PL+P+V++++ ER YDIYSRLL++RIIC
Sbjct: 13 SSLACYALFQCRFRNKLSLKCFHTGSQNYIPLIPMVLDKSTNVERYYDIYSRLLKDRIIC 72
Query: 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATW 133
+MG + D ++ V+AQLLFLQSE + PIH+YINSPGGSVT+GL IYDTMQ++ PP+AT+
Sbjct: 73 LMGAVTDEMAGSVIAQLLFLQSEDKRTPIHLYINSPGGSVTAGLAIYDTMQFIRPPVATF 132
Query: 134 CVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV 193
C+GQA SM SLLLAAG G R +LP+S IM+HQPSG
Sbjct: 133 CIGQASSMGSLLLAAGSHGCRFALPHSSIMVHQPSGSAH--------------------- 171
Query: 194 GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGL 253
GQA +DI+I+AEE+I + IN +
Sbjct: 172 GQA-------------------------------------SDIKIRAEELIRTRSVINTI 194
Query: 254 YVKHTGLSIEKIGK 267
Y +HT S E I K
Sbjct: 195 YERHTKQSQEVIEK 208
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 351 SIILCPFIFQGLSLGHLA-KTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIIC 409
S + C +FQ L+ K FH + PL+P+V++++ ER YDIYSRLL++RIIC
Sbjct: 13 SSLACYALFQCRFRNKLSLKCFHTGSQNYIPLIPMVLDKSTNVERYYDIYSRLLKDRIIC 72
Query: 410 VMGPVS 415
+MG V+
Sbjct: 73 LMGAVT 78
>gi|169831635|ref|YP_001717617.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638479|gb|ACA59985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Candidatus
Desulforudis audaxviator MP104C]
Length = 198
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 131/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RI+ + GPI+D ++++++AQLLFL++E K IH+
Sbjct: 4 LVPIVVEQTARGERAYDIYSRLLKDRIVFIGGPIEDHVANLIIAQLLFLEAEDPDKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG+ IYDTMQY+ P ++T C+GQA S + LLAAG G R +LP +RIM+
Sbjct: 64 YINSPGGLVTSGMAIYDTMQYIRPDVSTICLGQAASFGAFLLAAGTPGKRFALPYARIMM 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 124 HQPLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I I A EI+ K+ +N L KHTG +EKI + T
Sbjct: 135 ---------TEIDIHAREILRTKRVLNELLAKHTGQPVEKIERDT 170
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RI+ + GP+
Sbjct: 4 LVPIVVEQTARGERAYDIYSRLLKDRIVFIGGPIE 38
>gi|31340017|sp|Q8DG26.2|CLPP_VIBVU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|60389705|sp|Q7MMG7.2|CLPP_VIBVY RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 200
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 68 YINSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 128 HQPLGGFQ---------------------GQA---------------------------- 138
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L +HTG +E I + T
Sbjct: 139 ---------SDIQIHAQEILTIKTKLNKLLAEHTGQPLEVIERDT 174
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 8 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|149194680|ref|ZP_01871775.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
mediatlanticus TB-2]
gi|149135103|gb|EDM23584.1| ATP-dependent Clp protease proteolytic subunit [Caminibacter
mediatlanticus TB-2]
Length = 196
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE+TGRGERAYDIYSRLL++RII + G I+D +S++VAQLLFL++E+ +K I++
Sbjct: 4 LIPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEINDHTASLIVAQLLFLEAENPEKDIYL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSG IYDTM Y+ P + T C+GQA SM + LL++G KG R +LP++RIMI
Sbjct: 64 YINSPGGVVTSGFAIYDTMNYIKPDVVTICMGQAASMGAFLLSSGAKGKRFALPHARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 124 HQPLGGAQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +KK++N + ++TG S+ KI K T
Sbjct: 135 ---------TDIEIHAKEILRMKKELNKILAENTGQSVRKIEKDT 170
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIE+TGRGERAYDIYSRLL++RII + G ++
Sbjct: 4 LIPTVIEKTGRGERAYDIYSRLLKDRIIMLQGEIN 38
>gi|257138854|ref|ZP_05587116.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis E264]
gi|424903788|ref|ZP_18327301.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
gi|390931661|gb|EIP89062.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
Length = 217
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK ++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 60
>gi|402822003|ref|ZP_10871512.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
LH128]
gi|402264484|gb|EJU14338.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas sp.
LH128]
Length = 222
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLLRERI+ + G ++D ++S++VAQLLFL+SE+ K I M
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFITGQVEDHMASLIVAQLLFLESENPTKDISM 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+
Sbjct: 83 YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMV 142
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q MAS
Sbjct: 143 HQPSGGAQ-------------------------GMAS----------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
++ QA +I + +++++N LYVK+TG S+++I K+
Sbjct: 155 ---DIEIQAREI-------LRMRRRLNDLYVKYTGKSLDEIEKA 188
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER++DIYSRLLRERI+ + G V
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFITGQVE 57
>gi|94310823|ref|YP_584033.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus
metallidurans CH34]
gi|430810194|ref|ZP_19437309.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
gi|116243154|sp|Q1LM62.1|CLPP_RALME RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|93354675|gb|ABF08764.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Cupriavidus metallidurans CH34]
gi|429497428|gb|EKZ95961.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus sp.
HMR-1]
Length = 216
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K + +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P + T C+G A SM + LLAAG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVQTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG +EKI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNSILSEVTGQPVEKIARDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVN 59
>gi|17546430|ref|NP_519832.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum GMI1000]
gi|83745913|ref|ZP_00942970.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|207743049|ref|YP_002259441.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|300691404|ref|YP_003752399.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|300703972|ref|YP_003745574.1| proteolytic subunit of clpa-clpp ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|386333413|ref|YP_006029583.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|421888083|ref|ZP_16319197.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
gi|421898197|ref|ZP_16328564.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|22653696|sp|Q8XYP7.1|CLPP_RALSO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|17428728|emb|CAD15413.1| probable atp-atp-dependent clp protease proteolytic subunit
(endopeptidase clp). transmembrane protein [Ralstonia
solanacearum GMI1000]
gi|83727603|gb|EAP74724.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia
solanacearum UW551]
gi|206589403|emb|CAQ36365.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum MolK2]
gi|206594446|emb|CAQ61373.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum IPO1609]
gi|299066731|emb|CBJ37925.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CMR15]
gi|299071635|emb|CBJ42959.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum CFBP2957]
gi|299078464|emb|CBJ51116.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum PSI07]
gi|334195862|gb|AEG69047.1| atp-atp-dependent clp protease proteolytic subunit (endopeptidase
clp) protein [Ralstonia solanacearum Po82]
gi|344167643|emb|CCA79883.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[blood disease bacterium R229]
gi|344174667|emb|CCA86475.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia syzygii R24]
gi|378966546|emb|CCF95945.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Ralstonia solanacearum K60-1]
Length = 217
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL +YDTMQ+V P ++T C+G A SM + LLAAG KG R++LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRYALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG ++KI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNTILSEVTGQPVDKIARDT 191
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVN 59
>gi|113867496|ref|YP_725985.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia eutropha
H16]
gi|194289504|ref|YP_002005411.1| ATP-dependent clp protease proteolytic subunit [Cupriavidus
taiwanensis LMG 19424]
gi|339325652|ref|YP_004685345.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
gi|123033071|sp|Q0KBK4.1|CLPP_RALEH RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|226706449|sp|B3R4W1.1|CLPP_CUPTR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113526272|emb|CAJ92617.1| Endopeptidase Clp (type 1) [Ralstonia eutropha H16]
gi|193223339|emb|CAQ69344.1| proteolytic subunit of clpA-clpP ATP-dependent serine protease
[Cupriavidus taiwanensis LMG 19424]
gi|338165809|gb|AEI76864.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
N-1]
Length = 216
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K + +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVNDQTANLVVAQLLFLESENPDKDVSL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRSALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG +EKI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNTILSEVTGQPVEKIARDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVVFMVGEVN 59
>gi|456063263|ref|YP_007502233.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
gi|455440560|gb|AGG33498.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium CB]
Length = 209
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE +GRGERAYDIYSRLLRER++ ++G ++D +++V+AQLLFL+SE+ K I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKEISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P ++T C+G A SM + LL AGEKG R++LPNSR+MI
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 138 HQPLGGAR---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + TG SIE I K T
Sbjct: 149 ---------SDIEIQAREILYLRERLNKILADRTGQSIETIAKDT 184
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE +GRGERAYDIYSRLLRER++ ++G V+
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVN 52
>gi|219681825|ref|YP_002468211.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|219682380|ref|YP_002468764.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|257471527|ref|ZP_05635526.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. LSR1 (Acyrthosiphon pisum)]
gi|384226270|ref|YP_005617433.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
gi|384226766|ref|YP_005618517.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. JF98 (Acyrthosiphon pisum)]
gi|384227324|ref|YP_005619074.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|414562829|ref|YP_005618020.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
gi|219622113|gb|ACL30269.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. Tuc7 (Acyrthosiphon pisum)]
gi|219624668|gb|ACL30823.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. 5A (Acyrthosiphon pisum)]
gi|311086200|gb|ADP66282.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. LL01 (Acyrthosiphon pisum)]
gi|311086777|gb|ADP66858.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. TLW03 (Acyrthosiphon pisum)]
gi|311087365|gb|ADP67445.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. JF99 (Acyrthosiphon pisum)]
gi|311087863|gb|ADP67942.1| ATP-dependent Clp protease proteolytic subunit [Buchnera aphidicola
str. JF98 (Acyrthosiphon pisum)]
Length = 208
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 136/230 (59%), Gaps = 60/230 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P+V+EQ RGER+YDIYSRLL+ERII + G I+D++++ +VAQ+LFL++E+ +K I +
Sbjct: 17 FIPMVVEQHSRGERSYDIYSRLLKERIIFITGAIEDNMANNIVAQILFLEAENPEKDIFL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +TSG+ IYDTMQ+V P I+T C+GQACSMA+LLL +G KG R LPNS++MI
Sbjct: 77 YINSPGGIITSGMSIYDTMQFVKPEISTICLGQACSMAALLLTSGAKGKRFCLPNSKVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGYQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV--CF 272
+DI I A EI+ +KK++N L HTG SI+KI K T CF
Sbjct: 148 ---------SDIAIHAREIMEMKKKLNKLMSFHTGQSIKKINKDTERDCF 188
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+P+V+EQ RGER+YDIYSRLL+ERII + G +
Sbjct: 17 FIPMVVEQHSRGERSYDIYSRLLKERIIFITGAI 50
>gi|357473939|ref|XP_003607254.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
gi|217072528|gb|ACJ84624.1| unknown [Medicago truncatula]
gi|355508309|gb|AES89451.1| ATP-dependent Clp protease proteolytic subunit [Medicago
truncatula]
Length = 238
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/126 (69%), Positives = 105/126 (83%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE + RGERAYDI+SRLL+ERI+C+ GPI D + VVVAQLLFL+SE+ KPI+M
Sbjct: 29 LIPMVIETSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPINM 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGG+VT+GL IYDTMQY+ PI T C+GQA SM SLLL AG KG R +LPN+ IMI
Sbjct: 89 YLNSPGGAVTAGLAIYDTMQYIRSPINTICLGQAASMGSLLLCAGAKGQRRALPNATIMI 148
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 149 HQPSGG 154
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE + RGERAYDI+SRLL+ERI+C+ GP+S
Sbjct: 29 LIPMVIETSSRGERAYDIFSRLLKERIVCINGPIS 63
>gi|359785395|ref|ZP_09288547.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp.
GFAJ-1]
gi|359297324|gb|EHK61560.1| ATP-dependent Clp protease proteolytic subunit [Halomonas sp.
GFAJ-1]
Length = 205
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLESENPDKDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL AG G R+ LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFIKPDVSTVCIGQAASMGALLLTAGAAGKRYCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+ +++++N + HTG IE + T
Sbjct: 143 ---------SDIEIHTREILGIREKLNQILAHHTGQDIETVASDT 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ +GERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 12 LVPMVVEQSAKGERAYDIYSRLLKERVIFLVGPVEDY 48
>gi|237807855|ref|YP_002892295.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
auensis DSM 9187]
gi|237500116|gb|ACQ92709.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Tolumonas
auensis DSM 9187]
Length = 207
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE+ K I++
Sbjct: 16 LVPIVVEQTARGERSYDIYSRLLKERVIFLTGQVEDQMANLIVAQLLFLESENPDKDIYI 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDT++++ P ++T C+GQACSM + LL+AG KG R LP++R+MI
Sbjct: 76 YINSPGGSVTAGMAIYDTLKFIKPDVSTVCMGQACSMGAFLLSAGTKGKRFCLPSARVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A EI+ +K+++N L +HTG +E+I + T
Sbjct: 147 ---------SDIQIHAMEILKIKERLNNLLAEHTGQPLERIERDT 182
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPIVVEQTARGERSYDIYSRLLKERVIFLTGQVE 50
>gi|365838987|ref|ZP_09380240.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaeroglobus geminatus F0357]
gi|364566008|gb|EHM43714.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Anaeroglobus geminatus F0357]
Length = 202
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VPIV+EQ+ +GER+YDIYSRLL++RII + G IDD++++ ++AQLLFL++++ K IH+Y
Sbjct: 6 VPIVVEQSSQGERSYDIYSRLLKDRIIFLTGGIDDTVANSIIAQLLFLEADNPDKDIHLY 65
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ +YDTMQY+ P ++T CVG A SMAS+LL AG KG R +LP+S++MIH
Sbjct: 66 INSPGGVVTAGMAVYDTMQYIKPDVSTICVGSAASMASVLLTAGTKGKRFALPHSQVMIH 125
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGVQ GQA
Sbjct: 126 QPLGGVQ---------------------GQA----------------------------- 135
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ ++K++NG+ HTG IE I K T
Sbjct: 136 --------TDIEIHAREILRMRKELNGILASHTGRPIEVIEKDT 171
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+ +GER+YDIYSRLL++RII + G +
Sbjct: 6 VPIVVEQSSQGERSYDIYSRLLKDRIIFLTGGID 39
>gi|329296782|ref|ZP_08254118.1| ClpP [Plautia stali symbiont]
Length = 207
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 138/228 (60%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
+ LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K
Sbjct: 13 TNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKD 72
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I++YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR
Sbjct: 73 IYLYINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSR 132
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+MIHQP GG Q GQA
Sbjct: 133 VMIHQPLGGYQ---------------------GQA------------------------- 146
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 147 ------------TDIEIHAREILKVKQRMNELMAEHTGKSLEQIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 31/38 (81%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 13 TNALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|429333163|ref|ZP_19213868.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
CSV86]
gi|428762169|gb|EKX84378.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas putida
CSV86]
Length = 213
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 138/225 (61%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D ++++VVAQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLAAG G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAGAAGKRHCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+N+K ++N L HTG +E I + T
Sbjct: 150 ---------TDIEIHAQEILNIKSRLNELLAHHTGQDLETIKRDT 185
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 55
>gi|417842395|ref|ZP_12488486.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M19501]
gi|341947267|gb|EGT73935.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M19501]
Length = 193
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+ +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKQTLNDRLAFHTGQSIERIEKDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|289548353|ref|YP_003473341.1| ATP-dependent Clp protease proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
gi|289181970|gb|ADC89214.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Thermocrinis
albus DSM 14484]
Length = 199
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 135/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RI+ + PIDD +++++VAQLLFL+++ +K I+M
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIVLLGYPIDDHVANLIVAQLLFLEAQDPEKDIYM 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQY+ P + T C+GQA SMA++LLAAG KG R+SLP+SRIMI
Sbjct: 68 YINSPGGSVTAGMAIYDTMQYIKPDVVTICIGQAASMAAVLLAAGAKGKRYSLPHSRIMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG+ GQA
Sbjct: 128 HQPMGGIS---------------------GQAT--------------------------- 139
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
DI I AEEI +K +N + KHTG + K+ + Y +
Sbjct: 140 ----------DIIIHAEEIKRIKHMLNEIIAKHTGQPLSKVEQDVERDYFM 180
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 5/45 (11%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
LVPIVIEQT RGERAYDIYSRLL++RI+ ++G YPI AN
Sbjct: 8 LVPIVIEQTPRGERAYDIYSRLLQDRIV-LLG----YPIDDHVAN 47
>gi|399545473|ref|YP_006558781.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
BSs20148]
gi|399160805|gb|AFP31368.1| ATP-dependent Clp protease proteolytic subunit [Marinobacter sp.
BSs20148]
Length = 211
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 133/230 (57%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
+ S LVP+VIEQT RGER++DI+SRLL+ER+I ++GP++D ++++VVAQLLFL+SE+
Sbjct: 12 STSAALVPMVIEQTARGERSFDIFSRLLKERVIFMVGPVEDQMANLVVAQLLFLESENPD 71
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K IH+YINSPGGSV++G+ IYDTMQ++ P +AT CVGQA SM + LLA G G R LPN
Sbjct: 72 KDIHLYINSPGGSVSAGMSIYDTMQFIKPDVATLCVGQAASMGAFLLAGGAAGKRACLPN 131
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
SR+MIHQP GG Q GQA
Sbjct: 132 SRVMIHQPLGGYQ---------------------GQA----------------------- 147
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ ++ +N + HTG +E I + T
Sbjct: 148 --------------TDIEIHTREILKIRHTLNSILAHHTGQDLETISRDT 183
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ S LVP+VIEQT RGER++DI+SRLL+ER+I ++GPV
Sbjct: 12 STSAALVPMVIEQTARGERSFDIFSRLLKERVIFMVGPVE 51
>gi|337279216|ref|YP_004618688.1| ATP-dependent Clp protease proteolytic subunit [Ramlibacter
tataouinensis TTB310]
gi|334730293|gb|AEG92669.1| candidate ATP-dependent Clp protease proteolytic subunit
(Endopeptidase Clp) [Ramlibacter tataouinensis TTB310]
Length = 202
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 135/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQ+GRGER+YDIYSRLLRER++ ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 11 MVPIVIEQSGRGERSYDIYSRLLRERVVFLVGPVNDQTANLVVAQLLFLESENPDKDISF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTM ++ P ++T C G A SM + LLAAG KG R +LPNS++MI
Sbjct: 71 YINSPGGSVSAGMAIFDTMNFIKPDVSTLCTGMAASMGAFLLAAGTKGKRFALPNSKVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG+Q GQA
Sbjct: 131 HQPLGGMQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A++I+ + Q+N + + TG +EKI + T Y L
Sbjct: 142 ---------TDIEIHAKDILKTRAQLNKILAERTGQPLEKIERDTERDYFL 183
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VPIVIEQ+GRGER+YDIYSRLLRER++ ++GPV+
Sbjct: 11 MVPIVIEQSGRGERSYDIYSRLLRERVVFLVGPVN 45
>gi|152989915|ref|YP_001355637.1| ATP-dependent Clp protease proteolytic subunit [Nitratiruptor sp.
SB155-2]
gi|166201830|sp|A6Q1C1.1|CLPP_NITSB RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|151421776|dbj|BAF69280.1| ATP-dependent Clp protease, proteolytic subunit [Nitratiruptor sp.
SB155-2]
Length = 196
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE+TGRGER+YDIYSRLL++RII + G I+D+++S +VAQLLFL++E K I++Y
Sbjct: 5 IPYVIERTGRGERSYDIYSRLLKDRIIMLSGEINDAVASSIVAQLLFLEAEDPDKDIYLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSG+ IYDTM Y+ P ++T C+GQA SM + LL++G KG R++LP++RIMIH
Sbjct: 65 INSPGGVITSGMSIYDTMNYIKPDVSTICIGQAASMGAFLLSSGTKGKRYALPHARIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ LKK +N + ++TG S++KI K T
Sbjct: 135 --------TDIEIQAKEILRLKKILNEILAENTGQSVKKIAKDT 170
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE+TGRGER+YDIYSRLL++RII + G ++
Sbjct: 5 IPYVIERTGRGERSYDIYSRLLKDRIIMLSGEIN 38
>gi|206602656|gb|EDZ39137.1| Peptidase S14, ClpP [Leptospirillum sp. Group II '5-way CG']
Length = 203
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 142/251 (56%), Gaps = 60/251 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P V+EQT RGER+YDIYSRLL++RII + IDD ++++V+AQLLFL++E + K I++
Sbjct: 2 LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T CVGQA SM ++LLAAG G R +LPN+RIMI
Sbjct: 62 YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 122 HQPLGGVQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL--HDPYICF 282
T+I+I A EI+ +++ +NG+ KHT S+ K+ + T Y L D
Sbjct: 133 ---------TEIEIHAREILKMREHLNGILAKHTKQSLAKVAQDTDRDYFLSAEDAKAYG 183
Query: 283 WINGLYVKHTG 293
++ + H G
Sbjct: 184 LVDSVISSHRG 194
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
L+P V+EQT RGER+YDIYSRLL++RII
Sbjct: 2 LIPYVVEQTTRGERSYDIYSRLLKDRII 29
>gi|326386907|ref|ZP_08208521.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Novosphingobium nitrogenifigens DSM 19370]
gi|326208587|gb|EGD59390.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Novosphingobium nitrogenifigens DSM 19370]
Length = 231
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/128 (66%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQ+ RGER++DIYSRLLRERII V G I+D ++SV+VAQLLFL+SE+ K I M
Sbjct: 23 LIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEIEDHMASVIVAQLLFLESENPSKDISM 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTM+Y+ P ++T C+GQACSM S LLAAGE G+R +LPN+RIMI
Sbjct: 83 YINSPGGVVTAGMAIHDTMKYIRPRVSTVCIGQACSMGSFLLAAGEPGLRVALPNARIMI 142
Query: 165 HQPSGGVQ 172
HQPSGG +
Sbjct: 143 HQPSGGAR 150
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L+P+V+EQ+ RGER++DIYSRLLRERII V G +
Sbjct: 23 LIPVVVEQSSRGERSFDIYSRLLRERIIFVTGEI 56
>gi|304311290|ref|YP_003810888.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium HdN1]
gi|301797023|emb|CBL45236.1| ATP-dependent Clp protease proteolytic subunit [gamma
proteobacterium HdN1]
Length = 189
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/222 (44%), Positives = 134/222 (60%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQT RGER++DIYSRLL+ER+I ++G ++D +++++VAQLLFL+SE+ K IH+YIN
Sbjct: 1 MVIEQTARGERSFDIYSRLLKERLIFMVGQVEDHMANLIVAQLLFLESENPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+G+ IYDTMQ++ ++T CVGQACSM + LLAAG G R++LPNSR+MIHQP
Sbjct: 61 SPGGSVTAGMSIYDTMQFIKADVSTICVGQACSMGAFLLAAGAPGKRYALPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EII +K+++N + KH+G IEK+ T
Sbjct: 129 ------SDIEIHAREIITMKRRLNEMLAKHSGQPIEKVEGDT 164
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 28/32 (87%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 1 MVIEQTARGERSFDIYSRLLKERLIFMVGQVE 32
>gi|83718816|ref|YP_442643.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis E264]
gi|167581577|ref|ZP_02374451.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis TXDOH]
gi|167619693|ref|ZP_02388324.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis Bt4]
gi|167836265|ref|ZP_02463148.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
thailandensis MSMB43]
gi|110816456|sp|Q2SWQ6.1|CLPP_BURTA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|83652641|gb|ABC36704.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
thailandensis E264]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 136 HQPLGGAR---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK ++N L HTG +E+I + T
Sbjct: 147 ---------SDIEIQAREILYLKDRLNHLLAHHTGQDVERIARDT 182
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 50
>gi|118579613|ref|YP_900863.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pelobacter
propionicus DSM 2379]
gi|166201831|sp|A1AN85.1|CLPP_PELPD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|118502323|gb|ABK98805.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pelobacter
propionicus DSM 2379]
Length = 199
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 135/230 (58%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGERAYDIYSRLL+ERII + G IDD ++++++AQLLFL++E K IH+Y
Sbjct: 3 IPMVVEQSGRGERAYDIYSRLLKERIIFLGGGIDDQVANLIIAQLLFLEAEDPDKDIHLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VTSG+ IYDTM+Y+ P++T CVGQA SM ++LLAAGEKG R SL +SRIMIH
Sbjct: 63 INSPGGVVTSGMAIYDTMRYIKAPVSTICVGQAASMGAVLLAAGEKGKRFSLNHSRIMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 123 QPLGGFQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI I A+EI+ +K+++N + TG S E+I T Y +
Sbjct: 133 --------TDISIHAKEILRMKEELNSILADLTGQSKERIEADTDRDYFM 174
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGERAYDIYSRLL+ERII + G +
Sbjct: 3 IPMVVEQSGRGERAYDIYSRLLKERIIFLGGGID 36
>gi|386828606|ref|ZP_10115713.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Beggiatoa
alba B18LD]
gi|386429490|gb|EIJ43318.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Beggiatoa
alba B18LD]
Length = 213
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQ+ RGER+YDIYSRLL+ER+I ++G ++D +++++VAQLLFL+SE+ K IH+
Sbjct: 15 LVPIVVEQSARGERSYDIYSRLLKERLIFLVGQVEDYMANLIVAQLLFLESENPDKDIHL 74
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDT+Q++ P ++T C+GQA SM +LLLA+G G R+ LP+SR+MI
Sbjct: 75 YINSPGGSVTAGMSIYDTIQFIKPNVSTLCIGQASSMGALLLASGAAGKRYCLPHSRVMI 134
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 135 HQPLGGFQ---------------------GQA---------------------------- 145
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ ++ ++N + VKHTG +E I + T
Sbjct: 146 ---------TDIDIHAREILKVRDRLNNILVKHTGQPLETIARDT 181
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVPIV+EQ+ RGER+YDIYSRLL+ER+I ++G V Y
Sbjct: 15 LVPIVVEQSARGERSYDIYSRLLKERLIFLVGQVEDY 51
>gi|431929875|ref|YP_007242921.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioflavicoccus mobilis 8321]
gi|431828178|gb|AGA89291.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioflavicoccus mobilis 8321]
Length = 214
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+PIV+EQT RGER+YDIYSRLL+ER++ ++GPI+D ++++VVAQLLFL+SE+ K IH+
Sbjct: 17 LIPIVVEQTARGERSYDIYSRLLKERVVFLVGPIEDHMANLVVAQLLFLESENPDKDIHL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM+++ P I+T C+GQA SM +LLL G KG R LP+SR+MI
Sbjct: 77 YINSPGGSVTAGLAIYDTMRFIRPDISTMCIGQAASMGALLLTGGTKGKRFCLPHSRMMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 137 HQPLGGFQ---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A EI+ +++++N + HTG ++E+I T
Sbjct: 148 ---------TDIDIHAREILFIRERLNQILSHHTGQTVEQIADDT 183
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+PIV+EQT RGER+YDIYSRLL+ER++ ++GP+
Sbjct: 17 LIPIVVEQTARGERSYDIYSRLLKERVVFLVGPIE 51
>gi|260773194|ref|ZP_05882110.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
metschnikovii CIP 69.14]
gi|260612333|gb|EEX37536.1| ATP-dependent Clp protease proteolytic subunit [Vibrio
metschnikovii CIP 69.14]
Length = 208
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL++R+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T CVGQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTLCVGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+++K ++N L +HTG ++ I + T
Sbjct: 147 ---------SDIQIHAQEILSIKNKLNTLLAEHTGQPLDVIERDT 182
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL++R+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVE 50
>gi|195952528|ref|YP_002120818.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. Y04AAS1]
gi|195932140|gb|ACG56840.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. Y04AAS1]
Length = 205
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 108/128 (84%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RI+ + PIDD +++++VAQLLFL+++ +K I M
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLFLEAQDPEKDIQM 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LPN+RIMI
Sbjct: 74 YINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGTKGKRFALPNARIMI 133
Query: 165 HQPSGGVQ 172
HQP GGVQ
Sbjct: 134 HQPLGGVQ 141
Score = 126 bits (316), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 78/115 (67%)
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
++ I+ P G V GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LPN+RI
Sbjct: 72 QMYINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGTKGKRFALPNARI 131
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
MIHQP GGVQGQATDI I AEEI +K +N + TG ++ +I K Y +
Sbjct: 132 MIHQPLGGVQGQATDILIHAEEIKRIKHILNTILANATGKNLRQIEKDVDRDYFM 186
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 5/45 (11%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
LVPIV+EQT RGERAYDIYSRLL++RI+ ++G +PI AN
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIV-ILG----FPIDDHVAN 53
>gi|260887080|ref|ZP_05898343.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|330839143|ref|YP_004413723.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402833991|ref|ZP_10882598.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
gi|260863142|gb|EEX77642.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|329746907|gb|AEC00264.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Selenomonas
sputigena ATCC 35185]
gi|402279060|gb|EJU28103.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. CM52]
Length = 206
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 107/127 (84%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E++ RGERAYDIYSRLL++RI+ V GPIDD++++VVVAQLLFL+SE K IH+Y
Sbjct: 9 VPMVVERSNRGERAYDIYSRLLKDRIVFVGGPIDDNVANVVVAQLLFLESEDPDKDIHLY 68
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM SLLL AG KG R++LP +RIMIH
Sbjct: 69 INSPGGVVTAGLAIYDTMQYIRPDVSTICIGQAASMGSLLLTAGAKGKRYALPLARIMIH 128
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 129 QPLGGAQ 135
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E++ RGERAYDIYSRLL++RI+ V GP+
Sbjct: 9 VPMVVERSNRGERAYDIYSRLLKDRIVFVGGPID 42
>gi|153829246|ref|ZP_01981913.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae 623-39]
gi|148875284|gb|EDL73419.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
cholerae 623-39]
Length = 200
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 143/249 (57%), Gaps = 59/249 (23%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+EQT RGER+YDIYSRLL+ER+I + G ++D ++++VVAQLLFL+SE+ K I +Y
Sbjct: 9 VPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLY 68
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MIH
Sbjct: 69 INSPGGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIH 128
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 129 QPLGGFQ---------------------GQA----------------------------- 138
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST-VCFYVLHDPYICFWI 284
+DIQI A+EI+ +K ++N L +HTG IE I + T ++ D + + +
Sbjct: 139 --------SDIQIHAQEILTIKNKLNRLLAEHTGQPIEVIERDTDRDNFMSADQAVEYGL 190
Query: 285 NGLYVKHTG 293
+KH G
Sbjct: 191 VDAVLKHRG 199
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 9 VPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 42
>gi|50120087|ref|YP_049254.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
atrosepticum SCRI1043]
gi|60389567|sp|Q6D827.1|CLPP_ERWCT RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|49610613|emb|CAG74058.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
atrosepticum SCRI1043]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +E I + T
Sbjct: 147 ---------TDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDT 182
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGER+YDIYSRLL+ERII + G V Y
Sbjct: 16 LVPMVVEQTARGERSYDIYSRLLKERIIFLTGQVEDY 52
>gi|239907453|ref|YP_002954194.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
magneticus RS-1]
gi|259585949|sp|C4XH03.1|CLPP_DESMR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|239797319|dbj|BAH76308.1| ATP-dependent Clp protease proteolytic subunit [Desulfovibrio
magneticus RS-1]
Length = 202
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+PIVIE TGR ERAYDIYSRLLR+RII + +DD +++++ AQLLFL+SE +K I MY
Sbjct: 4 IPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG V++GL IYDTMQYV+PP++T C+GQA SM +LLL AG GMR++LP+SRIMIH
Sbjct: 64 INSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGMRYALPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 124 QPSGGYQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+E ++ +N + KHTG S+E+I T
Sbjct: 134 --------TDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDT 169
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+PIVIE TGR ERAYDIYSRLLR+RII + V Y
Sbjct: 4 IPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDY 39
>gi|170692395|ref|ZP_02883558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|307729638|ref|YP_003906862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|323526047|ref|YP_004228200.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
gi|170142825|gb|EDT10990.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
graminis C4D1M]
gi|307584173|gb|ADN57571.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1003]
gi|323383049|gb|ADX55140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1001]
Length = 217
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQ+LFL+SE+ K I+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNHLLAHHTGQPVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60
>gi|398792058|ref|ZP_10552756.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
YR343]
gi|398214190|gb|EJN00773.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
YR343]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDT 182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|354598750|ref|ZP_09016767.1| ATP-dependent Clp protease proteolytic subunit [Brenneria sp.
EniD312]
gi|353676685|gb|EHD22718.1| ATP-dependent Clp protease proteolytic subunit [Brenneria sp.
EniD312]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDYMANLIVAQMLFLEAENPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM S LLAAG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGSFLLAAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +E I + T
Sbjct: 147 ---------TDIEIHAKEILKVKARMNELLAKHTGQPLEVIERDT 182
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGER+YDIYSRLL+ERII + G V Y
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDY 52
>gi|452943368|ref|YP_007499533.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. HO]
gi|452881786|gb|AGG14490.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenobaculum sp. HO]
Length = 205
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 108/128 (84%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RI+ + PIDD +++++VAQLLFL+++ +K I M
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIVILGFPIDDHVANLIVAQLLFLEAQDPEKDIQM 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LPN+RIMI
Sbjct: 74 YINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGAKGKRFALPNARIMI 133
Query: 165 HQPSGGVQ 172
HQP GGVQ
Sbjct: 134 HQPLGGVQ 141
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 78/115 (67%)
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
++ I+ P G V GL IYDTMQY+ P + T C+GQA SM ++LLAAG KG R +LPN+RI
Sbjct: 72 QMYINSPGGSVTAGLAIYDTMQYIKPDVTTICIGQAASMGAVLLAAGAKGKRFALPNARI 131
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
MIHQP GGVQGQATDI I AEEI +K +N + TG S+ +I K Y +
Sbjct: 132 MIHQPLGGVQGQATDILIHAEEIKRIKHILNTILANATGKSLRQIEKDVDRDYFM 186
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 5/45 (11%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFAN 425
LVPIV+EQT RGERAYDIYSRLL++RI+ ++G +PI AN
Sbjct: 14 LVPIVVEQTPRGERAYDIYSRLLQDRIV-ILG----FPIDDHVAN 53
>gi|378578414|ref|ZP_09827089.1| ATP-dependent Clp protease proteolytic subunit [Pantoea stewartii
subsp. stewartii DC283]
gi|378768262|ref|YP_005196733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea
ananatis LMG 5342]
gi|386080397|ref|YP_005993922.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
ananatis PA13]
gi|354989578|gb|AER33702.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
ananatis PA13]
gi|365187746|emb|CCF10696.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea
ananatis LMG 5342]
gi|377818694|gb|EHU01775.1| ATP-dependent Clp protease proteolytic subunit [Pantoea stewartii
subsp. stewartii DC283]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|312796430|ref|YP_004029352.1| ATP-dependent endopeptidase clp proteolytic subunit clpP
[Burkholderia rhizoxinica HKI 454]
gi|312168205|emb|CBW75208.1| ATP-dependent endopeptidase clp proteolytic subunit clpP (EC
3.4.21.92) [Burkholderia rhizoxinica HKI 454]
Length = 238
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 147/268 (54%), Gaps = 73/268 (27%)
Query: 2 KKKTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYD 61
++ TF L Q P F+ +LG LVP+V+E +GRGERAYD
Sbjct: 19 DRRMTFRADLLNQLATHAPRDFEAQALG---------------LVPMVVETSGRGERAYD 63
Query: 62 IYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121
IYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +YINSPGGSV++G+ IYD
Sbjct: 64 IYSRLLKERLVFLVGEVNDQAANLVVAQLLFLESENPDKDISLYINSPGGSVSAGMAIYD 123
Query: 122 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTM 181
TMQ++ P + T C+G A SM + LLAAG KG R +LPN+R+MIHQP GG +
Sbjct: 124 TMQFIKPDVTTLCMGLAASMGAFLLAAGAKGKRIALPNARVMIHQPLGGAR--------- 174
Query: 182 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAE 241
GQA +DI+IQA
Sbjct: 175 ------------GQA-------------------------------------SDIEIQAR 185
Query: 242 EIINLKKQINGLYVKHTGLSIEKIGKST 269
EI+ LK+++N L +HTG +E+I + T
Sbjct: 186 EILFLKERLNNLLAQHTGQPVEQIQRDT 213
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 15/78 (19%)
Query: 338 KKKTTFCVYLEVQSIILCPFIFQGLSLGHLAKTFHHSATLSRPLVPIVIEQTGRGERAYD 397
++ TF L Q P F+ +LG LVP+V+E +GRGERAYD
Sbjct: 19 DRRMTFRADLLNQLATHAPRDFEAQALG---------------LVPMVVETSGRGERAYD 63
Query: 398 IYSRLLRERIICVMGPVS 415
IYSRLL+ER++ ++G V+
Sbjct: 64 IYSRLLKERLVFLVGEVN 81
>gi|221215056|ref|ZP_03588023.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD1]
gi|421469009|ref|ZP_15917506.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans ATCC BAA-247]
gi|421479611|ref|ZP_15927294.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans CF2]
gi|221164992|gb|EED97471.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
multivorans CGD1]
gi|400222687|gb|EJO53050.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans CF2]
gi|400230734|gb|EJO60485.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Burkholderia multivorans ATCC BAA-247]
Length = 208
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 76
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA+G KG R +LPNSR+MI
Sbjct: 77 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLASGAKGKRFALPNSRVMI 136
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 137 HQPLGGAR---------------------GQA---------------------------- 147
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L +HTG +E+I + T
Sbjct: 148 ---------SDIEIQAREILYLKERLNHLLAQHTGQDVERIARDT 183
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ER++ ++G V+
Sbjct: 17 LVPIVVETSGRGERSYDIYSRLLKERLVFMVGEVN 51
>gi|406999542|gb|EKE17145.1| hypothetical protein ACD_10C00602G0002 [uncultured bacterium]
Length = 209
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERA+DIYSRLL+ER+I ++GP++D +++VVAQLLFL++++ K I+
Sbjct: 16 MVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVNDITANLVVAQLLFLEADNPDKDIYF 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R +LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPDVSTLCIGQAASMGAFLLNAGAKGKRFALPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI++++ ++N + +H+G +E+I K T
Sbjct: 147 ---------SDIAIHAKEILSIRDRLNRIMAEHSGQPLERIEKDT 182
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERA+DIYSRLL+ER+I ++GPV+
Sbjct: 16 MVPMVIEQSGRGERAFDIYSRLLKERVIFLVGPVN 50
>gi|257455804|ref|ZP_05621030.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
aerosaccus SK60]
gi|257446818|gb|EEV21835.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Enhydrobacter
aerosaccus SK60]
Length = 224
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/262 (37%), Positives = 149/262 (56%), Gaps = 67/262 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGER++DIYSRLLRER++ + G ++D +++++VAQLLFL++E+ +K IH+
Sbjct: 30 LVPMVVEQSARGERSFDIYSRLLRERVVFLAGQVEDHMANLIVAQLLFLEAENPEKDIHL 89
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL ++DTM ++ P ++T C+G A SM S LLAAGEKG R++L N+R+MI
Sbjct: 90 YINSPGGSVSAGLAVFDTMNFIQPQVSTICMGGAYSMGSFLLAAGEKGKRYALANARVMI 149
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 150 HQPSGGAQ---------------------GQA---------------------------- 160
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+I A EI+ +++++N + + TG +EKI + D +W+
Sbjct: 161 ---------TDIEINAREILKIRERLNKILAERTGQPLEKIAR---------DVERDYWL 202
Query: 285 NGLYVKHTGLSIEKIGKSTNLT 306
+ K GL E + K ++
Sbjct: 203 DAQEAKEYGLIDEVLEKRPSIA 224
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+ RGER++DIYSRLLRER++ + G V
Sbjct: 30 LVPMVVEQSARGERSFDIYSRLLRERVVFLAGQVE 64
>gi|206890175|ref|YP_002248104.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|226706554|sp|B5YI38.1|CLPP_THEYD RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|206742113|gb|ACI21170.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 195
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VPIVIEQTGR ER YDIYSRLL++RII + I+D +++VV+AQLLFLQ+E +K IH+
Sbjct: 3 IVPIVIEQTGRTERVYDIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V+SGL IYDTMQYV P IAT+C+GQA SMA +LLAAG KG R +LP+SR+MI
Sbjct: 63 YINSPGGMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG GQA + IH
Sbjct: 123 HQPIGGF---------------------YGQATD---------------------VEIH- 139
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
A+EI+ +K +N + KHTG IEKI K T
Sbjct: 140 ---------------AKEILKMKDLLNNILAKHTGQPIEKIQKDT 169
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
+VPIVIEQTGR ER YDIYSRLL++RII +
Sbjct: 3 IVPIVIEQTGRTERVYDIYSRLLKDRIIFI 32
>gi|317047175|ref|YP_004114823.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
At-9b]
gi|316948792|gb|ADU68267.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
At-9b]
Length = 207
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKQRMNELMAEHTGKSLEQIERDT 182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|291616549|ref|YP_003519291.1| ClpP [Pantoea ananatis LMG 20103]
gi|386014922|ref|YP_005933199.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
ananatis AJ13355]
gi|291151579|gb|ADD76163.1| ClpP [Pantoea ananatis LMG 20103]
gi|327392981|dbj|BAK10403.1| ATP-dependent Clp protease proteolytic subunit ClpP [Pantoea
ananatis AJ13355]
Length = 218
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 27 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 87 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 146
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 147 HQPLGGYQ---------------------GQA---------------------------- 157
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 158 ---------TDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDT 193
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 27 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 61
>gi|84499432|ref|ZP_00997720.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
batsensis HTCC2597]
gi|84392576|gb|EAQ04787.1| Protease subunit of ATP-dependent Clp protease [Oceanicola
batsensis HTCC2597]
Length = 210
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 127/221 (57%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII V GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPVHDGMSSLIVAQLLHLEAENPTKDISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P + T +GQA SM SLLLA G GMR++LPN+ IM+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIKPKVGTLVIGQAASMGSLLLAGGAAGMRYALPNAEIMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG + GQA
Sbjct: 132 HQPSGGYR---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A LK+++N +YVKHTG E +
Sbjct: 143 ---------TDIMIHARHTEKLKERLNKIYVKHTGQDFETV 174
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/34 (79%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII V GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFVSGPV 45
>gi|334141356|ref|YP_004534562.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
PP1Y]
gi|359397994|ref|ZP_09191018.1| ATP-dependent Clp protease, protease subunit [Novosphingobium
pentaromativorans US6-1]
gi|333939386|emb|CCA92744.1| ATP-dependent Clp protease, protease subunit [Novosphingobium sp.
PP1Y]
gi|357600412|gb|EHJ62107.1| ATP-dependent Clp protease, protease subunit [Novosphingobium
pentaromativorans US6-1]
Length = 222
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLLRERI+ V G ++D ++S++VAQLLFL+SE+ K I M
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFVTGEVEDHMASLIVAQLLFLESENPSKDISM 82
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ I+DTMQY+ P ++T C+GQA SM S LLAAGE GMR +LPN+RIM+
Sbjct: 83 YINSPGGVVTAGMAIHDTMQYIKPRVSTVCIGQAASMGSFLLAAGEPGMRIALPNARIMV 142
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG A MAS
Sbjct: 143 HQPSGG-------------------------ARGMAS----------------------- 154
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
++ QA +I + ++K++N LYVK+TG S+++I ++
Sbjct: 155 ---DIEIQAREI-------LRMRKRLNDLYVKYTGKSLDEIEQA 188
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER++DIYSRLLRERI+ V G V
Sbjct: 23 LVPMVVEQTSRGERSFDIYSRLLRERIVFVTGEVE 57
>gi|421745790|ref|ZP_16183628.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
gi|409775704|gb|EKN57162.1| ATP-dependent Clp protease proteolytic subunit [Cupriavidus necator
HPC(L)]
Length = 216
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 143/243 (58%), Gaps = 59/243 (24%)
Query: 28 LGHLAKTFHHS-ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVV 86
L LA T + T+ LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G ++D +++V
Sbjct: 7 LDRLATTQASALETMGLGLVPMVVEQSGRGERAYDIYSRLLKERLVFMVGEVNDQTANLV 66
Query: 87 VAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLL 146
+AQLLFL+SE+ K + +YINSPGGSV++GL +YDTMQ++ P ++T C+G A SM + LL
Sbjct: 67 IAQLLFLESENPDKDVFLYINSPGGSVSAGLAVYDTMQFIKPDVSTLCMGMAASMGAFLL 126
Query: 147 AAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAA 206
AAG KG R +LPNSRIMIHQP GG + GQA
Sbjct: 127 AAGAKGKRLALPNSRIMIHQPLGGAR---------------------GQA---------- 155
Query: 207 GEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIG 266
+DI+IQA EI+ L++++N + + TG +EKI
Sbjct: 156 ---------------------------SDIEIQAREILYLRERLNSILAEVTGQPVEKIA 188
Query: 267 KST 269
+ T
Sbjct: 189 RDT 191
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 1/53 (1%)
Query: 364 LGHLAKTFHHS-ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L LA T + T+ LVP+V+EQ+GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 7 LDRLATTQASALETMGLGLVPMVVEQSGRGERAYDIYSRLLKERLVFMVGEVN 59
>gi|302390303|ref|YP_003826124.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
gi|302200931|gb|ADL08501.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thermosediminibacter oceani DSM 16646]
Length = 200
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 107/128 (83%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RI+ + PIDDS++S+V+AQLLFL+SE K I++
Sbjct: 3 LVPIVIEQTNRGERAYDIYSRLLKDRIVFIGTPIDDSIASLVIAQLLFLESEDPDKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTMQY+ P ++T C+G A SM ++LLA G G R +LPNSRIMI
Sbjct: 63 YINSPGGSVTAGLAIYDTMQYIKPDVSTICIGMAASMGAVLLAGGAPGKRLALPNSRIMI 122
Query: 165 HQPSGGVQ 172
HQP GGVQ
Sbjct: 123 HQPWGGVQ 130
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDIYSRLL++RI+ + P+
Sbjct: 3 LVPIVIEQTNRGERAYDIYSRLLKDRIVFIGTPID 37
>gi|291277236|ref|YP_003517008.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
gi|290964430|emb|CBG40280.1| ATP-dependent clp protease proteolytic subunit [Helicobacter
mustelae 12198]
Length = 195
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 133/224 (59%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE+TG+GER+YDIYSRLL++RI+ + G I+D ++S +VAQLLFL++E ++K I+ Y
Sbjct: 4 IPYVIERTGKGERSYDIYSRLLKDRIVLLSGEINDMVASSIVAQLLFLEAEDAQKDIYFY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG+VTS IYDTM Y+ P +AT CVGQA S +LLL++G KG R+SLPNSRIMIH
Sbjct: 64 INSPGGAVTSAFSIYDTMHYIRPDVATICVGQAASAGALLLSSGAKGKRYSLPNSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA EI+ LKK +N + +TG S++K+ + T
Sbjct: 134 --------TDIEIQANEILRLKKILNEILASNTGQSLKKVSQDT 169
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE+TG+GER+YDIYSRLL++RI+ + G ++
Sbjct: 4 IPYVIERTGKGERSYDIYSRLLKDRIVLLSGEIN 37
>gi|227113465|ref|ZP_03827121.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|253687443|ref|YP_003016633.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|403057519|ref|YP_006645736.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|251754021|gb|ACT12097.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|402804845|gb|AFR02483.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +E I + T
Sbjct: 147 ---------TDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|209521458|ref|ZP_03270166.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
gi|209498114|gb|EDZ98261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. H160]
Length = 217
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQ+LFL+SE+ K I+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK ++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKDRLNHLLAHHTGQPVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60
>gi|157369338|ref|YP_001477327.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
proteamaculans 568]
gi|157321102|gb|ABV40199.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
proteamaculans 568]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG ++E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAEHTGQTLEQIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|386824461|ref|ZP_10111596.1| ATP-dependent Clp protease proteolytic subunit [Serratia plymuthica
PRI-2C]
gi|386378672|gb|EIJ19474.1| ATP-dependent Clp protease proteolytic subunit [Serratia plymuthica
PRI-2C]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG ++E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAEHTGQTLEQIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|114048055|ref|YP_738605.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-7]
gi|123326387|sp|Q0HTK7.1|CLPP_SHESR RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113889497|gb|ABI43548.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-7]
Length = 202
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEILGIKHKLNLMLAEHTGQPLEVIERDT 177
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVE 45
>gi|317153552|ref|YP_004121600.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
aespoeensis Aspo-2]
gi|316943803|gb|ADU62854.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
aespoeensis Aspo-2]
Length = 202
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 135/230 (58%), Gaps = 58/230 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIE TGR ERAYDIYSRLL++RII + IDD ++S++ AQLLFL+SE +K I+MY
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRIILLSSAIDDHVASLICAQLLFLESEDPEKEIYMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG V++G+ IYDTMQY+ P++T C+GQA SM +LLLAAG +GMR++LP+SRIMIH
Sbjct: 64 INSPGGVVSAGMAIYDTMQYISAPVSTLCLGQAASMGALLLAAGAQGMRYALPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGTQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
+DI I A+EI+ L+ ++NG+ HTG ++KI T Y +
Sbjct: 134 --------SDIHIHAKEILRLRDELNGILAGHTGQKLDKIRDDTERDYFM 175
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICV 410
+P+VIE TGR ERAYDIYSRLL++RII +
Sbjct: 4 IPMVIETTGRTERAYDIYSRLLKDRIILL 32
>gi|295676517|ref|YP_003605041.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
gi|295436360|gb|ADG15530.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. CCGE1002]
Length = 217
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQ+LFL+SE+ K I+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK ++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKDRLNHLLAHHTGQPVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60
>gi|260768947|ref|ZP_05877881.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
CIP 102972]
gi|375131469|ref|YP_004993569.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
furnissii NCTC 11218]
gi|260616977|gb|EEX42162.1| ATP-dependent Clp protease proteolytic subunit [Vibrio furnissii
CIP 102972]
gi|315180643|gb|ADT87557.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Vibrio
furnissii NCTC 11218]
Length = 208
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL++R+I + G ++D ++++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G G R+ LPNSR+MI
Sbjct: 76 YINSPGGSVTAGMSIYDTMQFIKPNVSTLCIGQACSMGAFLLAGGAPGKRYVLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K ++N L HTG +E I + T
Sbjct: 147 ---------SDIQIHAQEILTIKNKLNRLLADHTGQPLEVIERDT 182
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL++R+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKDRVIFLTGQVE 50
>gi|261822507|ref|YP_003260613.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
wasabiae WPP163]
gi|261606520|gb|ACX89006.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Pectobacterium wasabiae WPP163]
gi|385872815|gb|AFI91335.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium sp.
SCC3193]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLVVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +E I + T
Sbjct: 147 ---------TDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDT 182
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|338707314|ref|YP_004661515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. pomaceae ATCC 29192]
gi|336294118|gb|AEI37225.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. pomaceae ATCC 29192]
Length = 211
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/137 (63%), Positives = 109/137 (79%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H A + LVP+V+EQ+ RGER++DIYSRLLRERII V G ++D ++SV+ AQLLFL++
Sbjct: 3 HDHADIFNALVPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEA 62
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ KK I++YINSPGG VT+GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR
Sbjct: 63 ENPKKDIYLYINSPGGVVTAGLAIHDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRI 122
Query: 156 SLPNSRIMIHQPSGGVQ 172
+ NSRIMIHQPSGG Q
Sbjct: 123 ATTNSRIMIHQPSGGAQ 139
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 33/44 (75%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H A + LVP+V+EQ+ RGER++DIYSRLLRERII V G V
Sbjct: 3 HDHADIFNALVPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVE 46
>gi|336315652|ref|ZP_08570560.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rheinheimera
sp. A13L]
gi|335879971|gb|EGM77862.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Rheinheimera
sp. A13L]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
L LVPIVIEQT +GER++DIYSRLL+ER+I + G ++D +++++VAQLLFL+SE+ +K
Sbjct: 10 LVNALVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQLLFLESENPEK 69
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I++YINSPGGSVT+G+ IYDTM+Y+ P IAT CVGQACSM + LL+ G KG R+ LPN+
Sbjct: 70 DIYIYINSPGGSVTAGMSIYDTMKYIKPNIATVCVGQACSMGAFLLSGGTKGKRYCLPNA 129
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+MIHQP GG Q GQA
Sbjct: 130 RVMIHQPLGGFQ---------------------GQA------------------------ 144
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD +I A EI+ +K+++N L +H G + E++ K T
Sbjct: 145 -------------TDFEIHAREILYIKEKLNRLMAEHCGKTYEQVCKDT 180
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L LVPIVIEQT +GER++DIYSRLL+ER+I + G V
Sbjct: 10 LVNALVPIVIEQTAKGERSFDIYSRLLKERVIFLTGQVE 48
>gi|429462878|ref|YP_007184341.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811375|ref|YP_007447830.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338392|gb|AFZ82815.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776533|gb|AGF47532.1| ATP-dependent Clp protease, protease subunit [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 203
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 113/137 (82%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
+ + S VP+V+E +G+GERAYDIYSRLL+ERII ++GPIDD+++++VVAQ+LFL+S
Sbjct: 4 NQTDDFSFNYVPMVVENSGKGERAYDIYSRLLKERIIFLVGPIDDNMANLVVAQMLFLES 63
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ KK IH+YINSPGGSV +GL I+DTM+++ P ++T C G A SM + LL+AGEKG R
Sbjct: 64 ENPKKDIHLYINSPGGSVYAGLAIFDTMKFIKPDVSTMCTGIAASMGAFLLSAGEKGKRF 123
Query: 156 SLPNSRIMIHQPSGGVQ 172
SLP+S IMIHQPSGGV+
Sbjct: 124 SLPSSSIMIHQPSGGVK 140
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ + S VP+V+E +G+GERAYDIYSRLL+ERII ++GP+
Sbjct: 4 NQTDDFSFNYVPMVVENSGKGERAYDIYSRLLKERIIFLVGPID 47
>gi|410479152|ref|YP_006766789.1| peptidase S14, ClpP [Leptospirillum ferriphilum ML-04]
gi|424867689|ref|ZP_18291469.1| Peptidase S14, ClpP [Leptospirillum sp. Group II 'C75']
gi|124514481|gb|EAY55994.1| ATP-dependent Clp protease, proteolytic subunit [Leptospirillum
rubarum]
gi|387221743|gb|EIJ76256.1| Peptidase S14, ClpP [Leptospirillum sp. Group II 'C75']
gi|406774404|gb|AFS53829.1| peptidase S14, ClpP [Leptospirillum ferriphilum ML-04]
Length = 203
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 142/251 (56%), Gaps = 60/251 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P V+EQT RGER+YDIYSRLL++RII + IDD ++++V+AQLLFL++E + K I++
Sbjct: 2 LIPYVVEQTTRGERSYDIYSRLLKDRIIFLGTAIDDMVANLVIAQLLFLEAEDASKDINL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T CVGQA SM ++LLAAG G R +LPN+RIMI
Sbjct: 62 YINSPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGAVLLAAGADGKRFALPNARIMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGVQ GQA
Sbjct: 122 HQPLGGVQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL--HDPYICF 282
T+I+I A EI+ +++ +NG+ KHT S+ K+ + T Y L D
Sbjct: 133 ---------TEIEIHAREILKMREHLNGILAKHTKQSLAKVSQDTDRDYFLSAEDAKAYG 183
Query: 283 WINGLYVKHTG 293
++ + H G
Sbjct: 184 LVDSVISSHRG 194
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
L+P V+EQT RGER+YDIYSRLL++RII
Sbjct: 2 LIPYVVEQTTRGERSYDIYSRLLKDRII 29
>gi|427412668|ref|ZP_18902860.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
gi|425716475|gb|EKU79459.1| ATP-dependent Clp protease proteolytic subunit [Veillonella ratti
ACS-216-V-Col6b]
Length = 197
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 136/224 (60%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+EQ+GRGER+YDIYSRLL++RI+ + GPI+D ++++V+AQLLFL++E K IH+Y
Sbjct: 3 VPVVVEQSGRGERSYDIYSRLLKDRIVFLGGPINDDVANLVIAQLLFLEAEDPDKDIHLY 62
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+G+ IYDTMQY+ P ++T CVG A SM ++LL AG KG R++LP++R+MIH
Sbjct: 63 INSPGGVVTAGMAIYDTMQYIKPDVSTICVGSAASMGAVLLTAGAKGKRYALPHARVMIH 122
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GGVQ GQA
Sbjct: 123 QPLGGVQ---------------------GQA----------------------------- 132
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
++I+I A EI+ +++++NGL H+G I+ I + T
Sbjct: 133 --------SEIEIHAREILRMREELNGLLASHSGQPIDVIARDT 168
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 32/34 (94%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+EQ+GRGER+YDIYSRLL++RI+ + GP++
Sbjct: 3 VPVVVEQSGRGERSYDIYSRLLKDRIVFLGGPIN 36
>gi|398798176|ref|ZP_10557477.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
GM01]
gi|398100893|gb|EJL91121.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Pantoea sp.
GM01]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 137/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGAFLLTAGTKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N L +HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKQRMNELMAEHTGKSLEEIERDT 182
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVE 50
>gi|88800033|ref|ZP_01115603.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea
blandensis MED297]
gi|88777159|gb|EAR08364.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Reinekea
blandensis MED297]
Length = 209
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER++DIYSRLL+E +I ++G ++D ++++VVAQLLFL+SE+ K IH+
Sbjct: 19 LVPMVVEQTSRGERSFDIYSRLLKENVIFLVGQVEDYMANLVVAQLLFLESENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL G KG R+ LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKPDVSTMCIGQAASMGALLLTGGAKGKRYCLPNSRMMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGYQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K+++N + HTG +E + + T
Sbjct: 150 ---------TDIEIHAREILEMKRRLNEIMAHHTGRPLEDVERDT 185
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGER++DIYSRLL+E +I ++G V Y
Sbjct: 19 LVPMVVEQTSRGERSFDIYSRLLKENVIFLVGQVEDY 55
>gi|297616502|ref|YP_003701661.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Syntrophothermus lipocalidus DSM 12680]
gi|297144339|gb|ADI01096.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Syntrophothermus lipocalidus DSM 12680]
Length = 203
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 129/224 (57%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RI+ + PIDD ++++++AQ LFL++E K IH
Sbjct: 7 LVPIVVEQTSRGERAYDIYSRLLKDRIVFLGSPIDDQVANLIIAQFLFLEAEDPDKDIHF 66
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+++G+ I+DTMQY+ P ++T CVG A SM + LLAAG KG R +LPNS IMI
Sbjct: 67 YINSPGGSISAGMAIFDTMQYLRPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMI 126
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 127 HQPIGGTQ---------------------GQA---------------------------- 137
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI+I A I+NLKK++N + + TG +E I +
Sbjct: 138 ---------TDIEIHARRIVNLKKRLNQILAERTGQKLEVIERD 172
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RI+ + P+
Sbjct: 7 LVPIVVEQTSRGERAYDIYSRLLKDRIVFLGSPID 41
>gi|407713410|ref|YP_006833975.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
gi|407235594|gb|AFT85793.1| ATP-dependent Clp protease, protease subunit [Burkholderia
phenoliruptrix BR3459a]
Length = 211
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQ+LFL+SE+ K I+
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDIYF 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 80 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 140 HQPLGGAR---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L HTG +E+I + T
Sbjct: 151 ---------SDIEIQAREILYLKERLNHLLAHHTGQPVERIARDT 186
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 54
>gi|307722032|ref|YP_003893172.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
autotrophica DSM 16294]
gi|306980125|gb|ADN10160.1| ATP-dependent Clp protease proteolytic subunit ClpP [Sulfurimonas
autotrophica DSM 16294]
Length = 196
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 134/224 (59%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P V+E+TGRGER+YDIYSRLL++RI+ + G ++D+++S +VAQ LFL++E +K I+ Y
Sbjct: 4 IPYVVEKTGRGERSYDIYSRLLKDRIVMLSGEVNDAVASTIVAQFLFLEAEDPEKDIYFY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL I+DTM Y+ P +AT C+GQA SM + LL+ GEKG R++LP++RIMIH
Sbjct: 64 INSPGGVVTAGLAIFDTMNYIRPHVATICIGQAASMGAFLLSCGEKGKRYALPHARIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQAEEI+ +KK++NG+ K+TG +I+ I T
Sbjct: 134 --------TDIAIQAEEILRMKKELNGILAKNTGQNIKTIEADT 169
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P V+E+TGRGER+YDIYSRLL++RI+ + G V+
Sbjct: 4 IPYVVEKTGRGERSYDIYSRLLKDRIVMLSGEVN 37
>gi|227328849|ref|ZP_03832873.1| ATP-dependent Clp protease proteolytic subunit [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D ++++VVAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDYMANLVVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRICLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+EI+ +K ++N L KHTG +E I + T
Sbjct: 147 ---------TDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDT 182
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGER+YDIYSRLL+ERII + G V Y
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDY 52
>gi|254468869|ref|ZP_05082275.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium KB13]
gi|207087679|gb|EDZ64962.1| ATP-dependent Clp protease, proteolytic subunit ClpP [beta
proteobacterium KB13]
Length = 207
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 133/224 (59%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GP+DD +++VVAQLLFL++E+ K I +Y
Sbjct: 18 IPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVDDMTANLVVAQLLFLEAENPDKDISLY 77
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL AG K R LPNSR+MIH
Sbjct: 78 INSPGGSVTAGMAIYDTMQFIKPDVSTLCIGQAASMGALLLTAGAKDKRFCLPNSRVMIH 137
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 138 QPLGGFQ---------------------GQA----------------------------- 147
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ LK ++N + HTG I+ I K T
Sbjct: 148 --------SDIEIHAKEILYLKDKLNRILSHHTGQDIKTISKDT 183
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 32/34 (94%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P+V+EQ+GRGER+YDIYSRLL+ER++ ++GPV
Sbjct: 18 IPMVVEQSGRGERSYDIYSRLLKERVVFLVGPVD 51
>gi|91783520|ref|YP_558726.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
xenovorans LB400]
gi|187923896|ref|YP_001895538.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
phytofirmans PsJN]
gi|385209690|ref|ZP_10036558.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
gi|116243110|sp|Q13Z15.1|CLPP2_BURXL RecName: Full=ATP-dependent Clp protease proteolytic subunit 2;
AltName: Full=Endopeptidase Clp 2
gi|91687474|gb|ABE30674.1| ATP-dependent Clp protease proteolytic subunit ClpP [Burkholderia
xenovorans LB400]
gi|187715090|gb|ACD16314.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
phytofirmans PsJN]
gi|385182028|gb|EIF31304.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
sp. Ch1-1]
Length = 217
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQ+LFL+SE+ K I
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVNDQTANLVVAQMLFLESENPDKDISF 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSR+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFIKPDVSTLCMGLAASMGAFLLAAGAKGKRFALPNSRVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNHLLAHHTGQPVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFLVGEVN 60
>gi|227486247|ref|ZP_03916563.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
gi|227235658|gb|EEI85673.1| endopeptidase Clp [Anaerococcus lactolyticus ATCC 51172]
Length = 205
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 128/225 (56%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIEQT RGERAYDIYSRLL++RII + G + D +S +++AQLLFL+SE K IH
Sbjct: 14 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLSGEVRDEVSDIIIAQLLFLESEDPNKDIHF 73
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTM Y+ P ++T C+GQA SM ++LL++G KG R SLPNS IMI
Sbjct: 74 YINSPGGVVTSGLAIYDTMNYIKPDVSTICIGQAASMGAVLLSSGAKGKRFSLPNSNIMI 133
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 134 HQPSGGAQ---------------------GQA---------------------------- 144
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI IQAE+I+ +K +N + ++TG + I K T
Sbjct: 145 ---------SDIVIQAEQILKIKANLNRILSENTGKDLATIEKDT 180
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP VIEQT RGERAYDIYSRLL++RII + G V
Sbjct: 14 LVPTVIEQTNRGERAYDIYSRLLKDRIIFLSGEV 47
>gi|421872665|ref|ZP_16304283.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
gi|372458638|emb|CCF13832.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Brevibacillus
laterosporus GI-9]
Length = 193
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 130/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + PI+D +++ VVAQLLFLQ+E K I +
Sbjct: 3 LIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQY+ P ++T CVG A SM S LL AG KG R++LPNS IMI
Sbjct: 63 YINSPGGSITAGMAIYDTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ II +++ +NG+Y + TG E+I K T
Sbjct: 134 ---------SDIEIAAKRIIKMREHLNGIYAERTGQPYERIAKDT 169
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQT RGERAYDIYSRLL++RII + P++
Sbjct: 3 LIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPIN 37
>gi|148553517|ref|YP_001261099.1| ATP-dependent Clp protease proteolytic subunit [Sphingomonas
wittichii RW1]
gi|148498707|gb|ABQ66961.1| Endopeptidase Clp [Sphingomonas wittichii RW1]
Length = 218
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 106/128 (82%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGER++DIYSRLLRERII V G ++D ++S++ AQLLFL+SE+ KK I M
Sbjct: 18 LVPVVIEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASLITAQLLFLESENPKKDIFM 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR +L NSRIM+
Sbjct: 78 YINSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIMV 137
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 138 HQPSGGAQ 145
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 74/102 (72%)
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
I+ P G V GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR +L NSRIM+H
Sbjct: 79 INSPGGVVTAGLAIHDTMQYIRPRVGTVCIGQAASMGSFLLAAGEPGMRVALTNSRIMVH 138
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
QPSGG QG A DI+IQA EI+ ++ ++N LY K+T IE I
Sbjct: 139 QPSGGAQGMAADIEIQAREILRMRHRLNSLYAKYTKQPIEAI 180
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQ+ RGER++DIYSRLLRERII V G V
Sbjct: 18 LVPVVIEQSNRGERSFDIYSRLLRERIIFVTGQVE 52
>gi|238926240|ref|ZP_04658000.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
gi|238885920|gb|EEQ49558.1| endopeptidase Clp [Selenomonas flueggei ATCC 43531]
Length = 197
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 106/125 (84%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+E +GRGERAYDIYSRLL+ERII + GPIDDS+++V+VAQ+LFL+SE K IH+YIN
Sbjct: 1 MVVENSGRGERAYDIYSRLLKERIIFLGGPIDDSVANVIVAQMLFLESEDPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VT+GL IYDTMQY+ P ++T CVGQA SM S+LL AG KG R++LP++RIMIHQP
Sbjct: 61 SPGGVVTAGLAIYDTMQYIKPDVSTICVGQAASMGSILLTAGAKGKRYALPHARIMIHQP 120
Query: 168 SGGVQ 172
GG Q
Sbjct: 121 LGGAQ 125
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+V+E +GRGERAYDIYSRLL+ERII + GP+
Sbjct: 1 MVVENSGRGERAYDIYSRLLKERIIFLGGPID 32
>gi|339007073|ref|ZP_08639648.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
gi|338776282|gb|EGP35810.1| ATP-dependent Clp protease proteolytic subunit 1 [Brevibacillus
laterosporus LMG 15441]
Length = 195
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/225 (45%), Positives = 130/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + PI+D +++ VVAQLLFLQ+E K I +
Sbjct: 5 LIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPINDQVANSVVAQLLFLQAEDPDKDISI 64
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQY+ P ++T CVG A SM S LL AG KG R++LPNS IMI
Sbjct: 65 YINSPGGSITAGMAIYDTMQYIKPDVSTICVGLAASMGSFLLCAGAKGKRYALPNSEIMI 124
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 125 HQPLGGAQ---------------------GQA---------------------------- 135
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ II +++ +NG+Y + TG E+I K T
Sbjct: 136 ---------SDIEIAAKRIIKMREHLNGIYAERTGQPYERIAKDT 171
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQT RGERAYDIYSRLL++RII + P++
Sbjct: 5 LIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPIN 39
>gi|343517775|ref|ZP_08754771.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
pittmaniae HK 85]
gi|343394626|gb|EGV07173.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
pittmaniae HK 85]
Length = 195
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDHMANLIVAQLLFLESEDPDKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P + T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDVRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+ +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKQTLNDRLAFHTGQSIERIEKDT 169
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|393776900|ref|ZP_10365194.1| ClpP protein [Ralstonia sp. PBA]
gi|392716257|gb|EIZ03837.1| ClpP protein [Ralstonia sp. PBA]
Length = 217
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERA+DIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 25 LVPMVVEQSGRGERAFDIYSRLLKERVVFLVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSAGLAIYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRFALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + TG +EKI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNQILSDVTGQPVEKIARDT 191
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERA+DIYSRLL+ER++ ++G V+
Sbjct: 25 LVPMVVEQSGRGERAFDIYSRLLKERVVFLVGEVN 59
>gi|53719039|ref|YP_108025.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121601387|ref|YP_993274.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
SAVP1]
gi|124386617|ref|YP_001029282.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10229]
gi|126440189|ref|YP_001059356.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 668]
gi|126450257|ref|YP_001080784.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
NCTC 10247]
gi|126451473|ref|YP_001066627.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1106a]
gi|134277993|ref|ZP_01764708.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|217421679|ref|ZP_03453183.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|226197408|ref|ZP_03792985.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237812684|ref|YP_002897135.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei MSHR346]
gi|238562204|ref|ZP_00440781.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242317499|ref|ZP_04816515.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|251766649|ref|ZP_02264557.2| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254178458|ref|ZP_04885113.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|254189184|ref|ZP_04895695.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|254206398|ref|ZP_04912750.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|254258354|ref|ZP_04949408.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|254297312|ref|ZP_04964765.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|254358192|ref|ZP_04974465.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|386861423|ref|YP_006274372.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403519055|ref|YP_006653189.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
gi|418382821|ref|ZP_12966747.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|418533694|ref|ZP_13099553.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|418540564|ref|ZP_13106094.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|418546808|ref|ZP_13111999.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|418553028|ref|ZP_13117869.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|67460243|sp|Q63V41.1|CLPP_BURPS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201803|sp|A3MKJ8.1|CLPP_BURM7 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201804|sp|A2SBG3.1|CLPP_BURM9 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201805|sp|A1V4X1.1|CLPP_BURMS RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201806|sp|A3NWA6.1|CLPP_BURP0 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201807|sp|A3NAI5.1|CLPP_BURP6 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52209453|emb|CAH35404.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei K96243]
gi|121230197|gb|ABM52715.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei SAVP1]
gi|124294637|gb|ABN03906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10229]
gi|126219682|gb|ABN83188.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 668]
gi|126225115|gb|ABN88655.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106a]
gi|126243127|gb|ABO06220.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei NCTC 10247]
gi|134251643|gb|EBA51722.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 305]
gi|147753841|gb|EDK60906.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei JHU]
gi|148027319|gb|EDK85340.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei 2002721280]
gi|157807201|gb|EDO84371.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 406e]
gi|157936863|gb|EDO92533.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pasteur 52237]
gi|160699497|gb|EDP89467.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 10399]
gi|217395421|gb|EEC35439.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 576]
gi|225930787|gb|EEH26797.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei Pakistan 9]
gi|237504658|gb|ACQ96976.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei MSHR346]
gi|238523066|gb|EEP86507.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei GB8 horse 4]
gi|242140738|gb|EES27140.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1106b]
gi|243065058|gb|EES47244.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei PRL-20]
gi|254217043|gb|EET06427.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710a]
gi|385360654|gb|EIF66568.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026a]
gi|385361174|gb|EIF67066.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258a]
gi|385362934|gb|EIF68724.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1258b]
gi|385372144|gb|EIF77269.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354e]
gi|385376976|gb|EIF81604.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 354a]
gi|385658551|gb|AFI65974.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1026b]
gi|403074698|gb|AFR16278.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BPC006]
Length = 217
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L+ ++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDT 192
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 60
>gi|397676240|ref|YP_006517778.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
subsp. mobilis ATCC 29191]
gi|395396929|gb|AFN56256.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
subsp. mobilis ATCC 29191]
Length = 210
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 136/233 (58%), Gaps = 58/233 (24%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H A + L+P+V+EQ+ RGER++DIYSRLLRERII V G ++D ++SV+ AQLLFL++
Sbjct: 3 HDHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEA 62
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ KK I +YINSPGG VT+GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR
Sbjct: 63 ENPKKDIFLYINSPGGVVTAGLAIHDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRV 122
Query: 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 215
+ NSRIMIHQPSGG Q GM
Sbjct: 123 ATTNSRIMIHQPSGGAQ-------------------------------------GM---- 141
Query: 216 PNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+ ++ QA +I + ++K++N LY K+T SIE+I K+
Sbjct: 142 ----------AADIEIQAREI-------LRMRKRLNALYAKYTNQSIEEIEKA 177
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H A + L+P+V+EQ+ RGER++DIYSRLLRERII V G V
Sbjct: 3 HDHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVE 46
>gi|254179427|ref|ZP_04886026.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
gi|254200063|ref|ZP_04906429.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|147749659|gb|EDK56733.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei FMH]
gi|184209967|gb|EDU07010.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1655]
Length = 211
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 79
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 80 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 139
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 140 HQPLGGAR---------------------GQA---------------------------- 150
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L+ ++N L HTG +E+I + T
Sbjct: 151 ---------SDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDT 186
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 20 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 54
>gi|238754235|ref|ZP_04615592.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
ATCC 29473]
gi|238707482|gb|EEP99842.1| ATP-dependent Clp protease proteolytic subunit [Yersinia ruckeri
ATCC 29473]
Length = 194
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDI+SRLL+ERII + G ++D +++++VAQ+LFL++E+ +K I +
Sbjct: 3 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAENPEKDIFL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQACSM + LL AG KG R LPNSR+MI
Sbjct: 63 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQACSMGAFLLTAGAKGKRFCLPNSRVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGFQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L KHTG +E+I + T
Sbjct: 134 ---------TDIEIHAREILKVKSRMNELMAKHTGKPLEEIERDT 169
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDI+SRLL+ERII + G V
Sbjct: 3 LVPMVVEQTSRGERSYDIFSRLLKERIIFLTGQVE 37
>gi|381158611|ref|ZP_09867844.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thiorhodovibrio sp. 970]
gi|380879969|gb|EIC22060.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thiorhodovibrio sp. 970]
Length = 232
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER++DI+SRLL+ER+I ++GP+DD +++VVAQ+LFL+SE+ K IH
Sbjct: 30 LVPIVVEQTARGERSFDIFSRLLKERVIFLVGPVDDHTANLVVAQMLFLESENPDKDIHF 89
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+GL IYDTM ++ P ++T CVGQA SM +LLLA G G R LP+SR+MI
Sbjct: 90 YINSPGGSVTAGLAIYDTMCFIRPDVSTMCVGQAASMGALLLAGGTAGKRFCLPHSRMMI 149
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 150 HQPLGGFQ---------------------GQA---------------------------- 160
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EI+ +++Q+N ++ HTG IEKI T
Sbjct: 161 ---------SDIDIHAREILKIREQLNRIFSHHTGQPIEKIADDT 196
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER++DI+SRLL+ER+I ++GPV
Sbjct: 30 LVPIVVEQTARGERSFDIFSRLLKERVIFLVGPVD 64
>gi|448240808|ref|YP_007404861.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
marcescens WW4]
gi|445211172|gb|AGE16842.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Serratia
marcescens WW4]
Length = 207
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG +E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAEHTGQPLEQIERDT 182
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|88810607|ref|ZP_01125864.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
mobilis Nb-231]
gi|88792237|gb|EAR23347.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Nitrococcus
mobilis Nb-231]
Length = 214
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GP++D +++++AQLLFL+SE+ K IH+
Sbjct: 16 LVPMVVEQTARGERAYDIYSRLLKERVIFLVGPVEDHQANLLIAQLLFLESENPDKDIHL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG V++GL IYDTMQ+V P ++T C+GQA SM +LLL G G R+ LPNSRIMI
Sbjct: 76 YINSPGGVVSAGLAIYDTMQFVKPDVSTVCLGQAASMGALLLTGGAAGKRYCLPNSRIMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGFQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TD++I A EI+ +++++N + +HTG IE I + T
Sbjct: 147 ---------TDVEIHAREILAMRERLNQILAQHTGQDIETIQQDT 182
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGERAYDIYSRLL+ER+I ++GPV
Sbjct: 16 LVPMVVEQTARGERAYDIYSRLLKERVIFLVGPVE 50
>gi|91793847|ref|YP_563498.1| ATP-dependent Clp protease proteolytic subunit [Shewanella
denitrificans OS217]
gi|123356647|sp|Q12LA1.1|CLPP_SHEDO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|91715849|gb|ABE55775.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
denitrificans OS217]
Length = 203
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G +++ +++++VAQLLFL+SES K I++
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G KG RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKNKLNQMLAEHTGQPLEVIERDT 178
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G V
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVE 46
>gi|350572241|ref|ZP_08940546.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
gi|349790497|gb|EGZ44406.1| ATP-dependent Clp protease, protease subunit [Neisseria wadsworthii
9715]
Length = 212
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERI+ ++GP++D +++VVAQ+LFL+SE+ K I+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVNDHTANLVVAQMLFLESENPDKDIYF 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ I+DTM +V P ++T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 70 YINSPGGSVTAGMSIFDTMNFVKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I +K+++N KHTG +EK+ + T
Sbjct: 144 ----------DIEIHARELIKIKEKLNYFLAKHTGQPLEKVERDT 178
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERI+ ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIVFLVGPVN 44
>gi|453062436|gb|EMF03427.1| ATP-dependent Clp protease proteolytic subunit [Serratia marcescens
VGH107]
Length = 207
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL+ERII + G ++D +++++VAQ+LFL++ES +K I++
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVEDHMANLIVAQMLFLEAESPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTM+++ P ++T C+GQACSM S LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMKFIKPDVSTICMGQACSMGSFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L +HTG +E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKARMNELMAEHTGQPLEQIERDT 182
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT RGER+YDIYSRLL+ERII + G V
Sbjct: 16 LVPMVVEQTSRGERSYDIYSRLLKERIIFLTGQVE 50
>gi|400288463|ref|ZP_10790495.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter sp.
PAMC 21119]
Length = 215
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 151/270 (55%), Gaps = 68/270 (25%)
Query: 26 LSLGHLAKTFHHSATLSRP-LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSS 84
+S + A++ H+ + + LVP+V+EQ+ RGER++DI+SRLLRER+I + G ++D +++
Sbjct: 1 MSAHNTAQSAQHTQSAPQAALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMAN 60
Query: 85 VVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASL 144
++VAQLLFL++E+ K IH+YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S
Sbjct: 61 LIVAQLLFLEAENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSF 120
Query: 145 LLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLL 204
LLAAGEKG R++L N+R+MIHQPSGG Q GQA
Sbjct: 121 LLAAGEKGKRYALANARVMIHQPSGGAQ---------------------GQA-------- 151
Query: 205 AAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEK 264
TDI+I A EI+ + ++N + + TG +EK
Sbjct: 152 -----------------------------TDIEINAREILKTRARLNKILAERTGQPVEK 182
Query: 265 IGKSTVCFYVLHDPYICFWINGLYVKHTGL 294
I K D +W++ K GL
Sbjct: 183 IEK---------DVERDYWLDAEEAKEYGL 203
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 362 LSLGHLAKTFHHSATLSRP-LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+S + A++ H+ + + LVP+V+EQ+ RGER++DI+SRLLRER+I + G V
Sbjct: 1 MSAHNTAQSAQHTQSAPQAALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVE 55
>gi|145589117|ref|YP_001155714.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047523|gb|ABP34150.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 209
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIE +GRGERAYDIYSRLLRER++ ++G ++D +++V+AQLLFL+SE+ K I +
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVNDQTANLVIAQLLFLESENPDKDISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++GL IYDTMQ++ P ++T C+G A SM + LL AGEKG R++LPNSR+MI
Sbjct: 78 YINSPGGSVSAGLAIYDTMQFIKPHVSTLCMGMAASMGAFLLCAGEKGKRYALPNSRVMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 138 HQPLGGAR---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + TG SI+ I K T
Sbjct: 149 ---------SDIEIQAREILYLRERLNKILADRTGQSIDTIAKDT 184
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIE +GRGERAYDIYSRLLRER++ ++G V+
Sbjct: 18 LVPMVIETSGRGERAYDIYSRLLRERVVFLVGEVN 52
>gi|342905185|ref|ZP_08726974.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M21621]
gi|419840044|ref|ZP_14363442.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
haemolyticus HK386]
gi|341951687|gb|EGT78246.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M21621]
gi|386908569|gb|EIJ73261.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
haemolyticus HK386]
Length = 193
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|320106219|ref|YP_004181809.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
saanensis SP1PR4]
gi|319924740|gb|ADV81815.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Terriglobus
saanensis SP1PR4]
Length = 198
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 138/232 (59%), Gaps = 55/232 (23%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGERAYDIYSRLLR+ II + PIDD++++V++AQLLFL E +K I +
Sbjct: 3 LVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPIDDNIANVIIAQLLFLSGEDPEKDIQL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQY+ ++T C+GQA SM + LL AG+KG R +LPNSRI+I
Sbjct: 63 YINSPGGSITAGMAIYDTMQYIKNDVSTLCIGQAASMGAFLLMAGKKGKRFALPNSRILI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP L++ G
Sbjct: 123 HQP----------------------------------LIMGGG----------------- 131
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLH 276
+ GQAT+I I A EI+ +++ +N + +HTG ++E+I + T ++++
Sbjct: 132 ----ISGQATEIDIHAREILRIRELMNKIQAEHTGQTLEQIERDTDRDFIMN 179
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGERAYDIYSRLLR+ II + P+
Sbjct: 3 LVPMVIEQTSRGERAYDIYSRLLRDNIIFLGTPID 37
>gi|260913095|ref|ZP_05919577.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
gi|260632682|gb|EEX50851.1| ATP-dependent Clp protease [Pasteurella dagmatis ATCC 43325]
Length = 193
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE +K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPEKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T CVGQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCVGQACSMGAFLLAGGTAGKRIALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K+ +N HTG SIE+I + T
Sbjct: 134 ---------SDIQIHAQEILKIKQTLNERLAFHTGQSIERIERDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|372279706|ref|ZP_09515742.1| ATP-dependent Clp protease proteolytic subunit [Oceanicola sp.
S124]
Length = 210
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 127/221 (57%), Gaps = 58/221 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++VAQLL L++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPVHDGMSSLIVAQLLHLEAENPSKEISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ P ++T VGQA SM SLLLA G GMR +LPNS +M+
Sbjct: 72 YINSPGGVVTSGLSIYDTMQYIRPKVSTLVVGQAASMGSLLLAGGAAGMRFALPNSEVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGYQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A LK+++N +YVKHTG E +
Sbjct: 143 ---------TDILIHARHTERLKERLNRIYVKHTGQDYETV 174
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGPV 45
>gi|373467005|ref|ZP_09558311.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus sp. oral taxon 851 str. F0397]
gi|371759511|gb|EHO48238.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Haemophilus sp. oral taxon 851 str. F0397]
Length = 193
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|417846493|ref|ZP_12492495.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M21639]
gi|341952170|gb|EGT78707.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
haemolyticus M21639]
Length = 193
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRTALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|53723667|ref|YP_103112.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia mallei
ATCC 23344]
gi|76808778|ref|YP_333874.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 1710b]
gi|167719122|ref|ZP_02402358.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei DM98]
gi|167738116|ref|ZP_02410890.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 14]
gi|167815308|ref|ZP_02446988.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 91]
gi|167823710|ref|ZP_02455181.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 9]
gi|167845261|ref|ZP_02470769.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei B7210]
gi|167893805|ref|ZP_02481207.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 7894]
gi|167902257|ref|ZP_02489462.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei NCTC 13177]
gi|167910496|ref|ZP_02497587.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei 112]
gi|167918525|ref|ZP_02505616.1| ATP-dependent Clp protease proteolytic subunit [Burkholderia
pseudomallei BCC215]
gi|67460238|sp|Q62JK7.1|CLPP_BURMA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|92087004|sp|Q3JRC9.1|CLPP_BURP1 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|52427090|gb|AAU47683.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
mallei ATCC 23344]
gi|76578231|gb|ABA47706.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei 1710b]
Length = 207
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G KG R++LPN+R+MI
Sbjct: 76 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGAKGKRYALPNARVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 136 HQPLGGAR---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L+ ++N L HTG +E+I + T
Sbjct: 147 ---------SDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDT 182
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 16 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 50
>gi|145635952|ref|ZP_01791637.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittAA]
gi|319897851|ref|YP_004136048.1| ATP-dependent clp protease proteolytic subunit [Haemophilus
influenzae F3031]
gi|378696913|ref|YP_005178871.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Haemophilus influenzae 10810]
gi|145266785|gb|EDK06804.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittAA]
gi|301169432|emb|CBW29032.1| proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine
proteases [Haemophilus influenzae 10810]
gi|317433357|emb|CBY81736.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae F3031]
Length = 193
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|422664685|ref|ZP_16724558.1| ATP-dependent Clp protease proteolytic subunit, partial
[Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330975104|gb|EGH75170.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
syringae pv. aptata str. DSM 50252]
Length = 150
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LLA G +G RH LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMI 138
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 139 HQPLGGFQ 146
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 70/117 (59%), Gaps = 2/117 (1%)
Query: 120 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI--MIHQPSGGVQVGLGI 177
YD +L + VG + L+AA + P+ I I+ P G V G+ I
Sbjct: 34 YDIYSRLLKERVIFMVGPVEDYMANLIAAQLLFLEAENPDKDIHLYINSPGGSVTAGMSI 93
Query: 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQAT 234
YDTMQ++ P ++T C+GQACSM + LLA G +G RH LPNSR+MIHQP GG QGQA+
Sbjct: 94 YDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQAS 150
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/37 (72%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGPVEDY 55
>gi|334339586|ref|YP_004544566.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Desulfotomaculum ruminis DSM 2154]
gi|334090940|gb|AEG59280.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Desulfotomaculum ruminis DSM 2154]
Length = 195
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGERAYDIYSRLL++RII + GPI+D ++++V+AQ LFL++E +K IH+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIEDHIANLVIAQFLFLEAEDPEKDIHL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+ IYDTMQY+ P++T C+GQA SM S LLAAG KG R+SLP +RIMI
Sbjct: 64 YINSPGGVVTAGMAIYDTMQYIKCPVSTICLGQAASMGSFLLAAGTKGKRYSLPYARIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQ GGVQ GQA
Sbjct: 124 HQVLGGVQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I A+EI+ +K+ +N HTG ++KI + T
Sbjct: 135 ---------TDIDIHAKEILRIKEVLNERLSHHTGQPLDKIARDT 170
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGERAYDIYSRLL++RII + GP+
Sbjct: 4 LVPIVVEQTNRGERAYDIYSRLLKDRIIFIGGPIE 38
>gi|145628436|ref|ZP_01784237.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 22.1-21]
gi|145633845|ref|ZP_01789567.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 3655]
gi|145637965|ref|ZP_01793604.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittHH]
gi|145639474|ref|ZP_01795079.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittII]
gi|148826642|ref|YP_001291395.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittEE]
gi|148827882|ref|YP_001292635.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittGG]
gi|229845547|ref|ZP_04465675.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 6P18H1]
gi|229847178|ref|ZP_04467282.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 7P49H1]
gi|260583375|ref|ZP_05851146.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
influenzae NT127]
gi|319775445|ref|YP_004137933.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae F3047]
gi|386266553|ref|YP_005830045.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
influenzae R2846]
gi|166201826|sp|A5UE11.1|CLPP_HAEIE RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|166201827|sp|A5UHJ6.1|CLPP_HAEIG RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|144980211|gb|EDJ89870.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 22.1-21]
gi|144985287|gb|EDJ92126.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 3655]
gi|145268831|gb|EDK08795.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittHH]
gi|145271521|gb|EDK11433.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittII]
gi|148716802|gb|ABQ99012.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittEE]
gi|148719124|gb|ABR00252.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae PittGG]
gi|229809854|gb|EEP45576.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 7P49H1]
gi|229811563|gb|EEP47264.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae 6P18H1]
gi|260093580|gb|EEW77497.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Haemophilus
influenzae NT127]
gi|309751687|gb|ADO81671.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
influenzae R2866]
gi|309973789|gb|ADO96990.1| ATP-dependent Clp protease proteolytic subunit ClpP [Haemophilus
influenzae R2846]
gi|317450036|emb|CBY86250.1| ATP-dependent Clp protease proteolytic subunit [Haemophilus
influenzae F3047]
Length = 193
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 63 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGFR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 134 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 3 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 37
>gi|260222837|emb|CBA32804.1| ATP-dependent Clp protease proteolytic subunit [Curvibacter
putative symbiont of Hydra magnipapillata]
Length = 220
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 134/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GP++D +++VVAQLLFL+SE+ K I
Sbjct: 29 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDQTANLVVAQLLFLESENPDKDISF 88
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTM ++ P ++T C G A SM + LLAAG KG R SLPNS++MI
Sbjct: 89 YINSPGGSVSAGMAIYDTMNFIKPDVSTLCTGMAASMGAFLLAAGAKGKRFSLPNSKVMI 148
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 149 HQPLGGTQ---------------------GQA---------------------------- 159
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
T+I+I A EI+ ++Q+N + + TG +EKI + T Y L
Sbjct: 160 ---------TEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYL 201
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 29 MVPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVN 63
>gi|357059570|ref|ZP_09120412.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
gi|355371647|gb|EHG18991.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas infelix
ATCC 43532]
Length = 203
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 106/127 (83%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDDS+++VVVAQLLFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LL AG G R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|345874540|ref|ZP_08826351.1| endopeptidase [Neisseria weaveri LMG 5135]
gi|417957883|ref|ZP_12600801.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343967629|gb|EGV35872.1| endopeptidase [Neisseria weaveri ATCC 51223]
gi|343970451|gb|EGV38628.1| endopeptidase [Neisseria weaveri LMG 5135]
Length = 207
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 136/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIEQ+GRGERA+DIYSRLL+ERII ++GP++D +++VVAQLLFL+SE+ K I +
Sbjct: 10 LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVNDQTANLVVAQLLFLESENPDKDIFL 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTM+++ P ++T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 70 YINSPGGSVTAGMSIYDTMKFIKPDVSTLCLGQAASMGAFLLSAGTKGKRFALPNSRIMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I +K+++N L +H+G + K+ + T
Sbjct: 144 ----------DIEIHARELIKIKEKLNRLLAEHSGQDLAKVERDT 178
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LVPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVN 44
>gi|117921102|ref|YP_870294.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
ANA-3]
gi|166214711|sp|A0KYL9.1|CLPP_SHESA RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|117613434|gb|ABK48888.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
ANA-3]
Length = 202
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEILGIKHKLNLMLSEHTGQPLEVIERDT 177
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVE 45
>gi|116243153|sp|Q1Q8J2.2|CLPP_PSYCK RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
Length = 215
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 147/260 (56%), Gaps = 68/260 (26%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
++ SAT + LVP+V+EQ+ RGER++DI+SRLLRER+I + G ++D +++++VAQLLFL+
Sbjct: 12 YNQSATQA-ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLE 70
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ K IH+YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S LLAAGEKG R
Sbjct: 71 AENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKR 130
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
++L N+R+MIHQPSGG Q GQA
Sbjct: 131 YALANARVMIHQPSGGAQ---------------------GQA------------------ 151
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYV 274
TDI+I A EI+ + ++N + + TG ++KI K
Sbjct: 152 -------------------TDIEINAREILKTRARLNEILAERTGQPVDKIEK------- 185
Query: 275 LHDPYICFWINGLYVKHTGL 294
D +W++ K GL
Sbjct: 186 --DVERDYWLDAKEAKEYGL 203
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ SAT + LVP+V+EQ+ RGER++DI+SRLLRER+I + G V
Sbjct: 12 YNQSATQA-ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVE 55
>gi|255642366|gb|ACU21447.1| unknown [Glycine max]
Length = 175
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/126 (68%), Positives = 106/126 (84%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIE + RGERAYDI+SRLL+ERIIC+ GPI D + VVVAQ LFL+SE+ KPI+M
Sbjct: 27 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQPLFLESENPSKPINM 86
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+NSPGG++++GL IYDTMQY+ P++T C+GQA SM SLLLAAG KG R SLPN+ IMI
Sbjct: 87 YLNSPGGAISAGLAIYDTMQYIRSPVSTICMGQAASMGSLLLAAGAKGERRSLPNATIMI 146
Query: 165 HQPSGG 170
HQPSGG
Sbjct: 147 HQPSGG 152
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIE + RGERAYDI+SRLL+ERIIC+ GP+S
Sbjct: 27 LIPMVIEHSSRGERAYDIFSRLLKERIICINGPIS 61
>gi|388566136|ref|ZP_10152607.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenophaga sp. PBC]
gi|388266642|gb|EIK92161.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Hydrogenophaga sp. PBC]
Length = 205
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 135/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+VP+VIEQ+GRGERAYDIYSRLL+ER++ ++GP++D ++++VAQLLFL+SE+ K I
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVNDQSANLIVAQLLFLESENPDKDISF 70
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ I+DTM ++ P ++T CVG A SM + LLAAG KG R SLPNS++MI
Sbjct: 71 YINSPGGSVSAGMAIFDTMNFIKPDVSTLCVGMAASMGAFLLAAGTKGKRFSLPNSKVMI 130
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 131 HQPLGGTQ---------------------GQA---------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
T+I+I A EI+ ++Q+N + + TG +EKI + T Y L
Sbjct: 142 ---------TEIEIHAREILKTREQLNKILAERTGQPLEKIERDTERDYYL 183
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VP+VIEQ+GRGERAYDIYSRLL+ER++ ++GPV+
Sbjct: 11 MVPMVIEQSGRGERAYDIYSRLLKERVVFLVGPVN 45
>gi|113970830|ref|YP_734623.1| ATP-dependent Clp protease proteolytic subunit [Shewanella sp.
MR-4]
gi|123029527|sp|Q0HHA1.1|CLPP_SHESM RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|113885514|gb|ABI39566.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella sp.
MR-4]
Length = 202
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/235 (42%), Positives = 139/235 (59%), Gaps = 58/235 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G +++ +++++VAQLLFL+
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLE 60
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
SES K I +YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA GEKG R
Sbjct: 61 SESPDKDIFLYINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKR 120
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
LPNSR+MIHQP GG Q GQA
Sbjct: 121 FCLPNSRVMIHQPLGGFQ---------------------GQA------------------ 141
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG +E I + T
Sbjct: 142 -------------------SDIAIHAQEILGIKHKLNLMLSEHTGQPLELIERDT 177
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H+++ + LVP+VIEQT +GER++DIYSRLL+ERII ++G V
Sbjct: 1 MHNASDIQSALVPMVIEQTAKGERSFDIYSRLLKERIIFLVGQVE 45
>gi|297737943|emb|CBI27144.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 129/228 (56%), Gaps = 58/228 (25%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIE + RGERAYDI+SRLL+ERI+C+ GPI D + VVVAQLLFL+SE+ KPIHMY+N
Sbjct: 1 MVIEHSSRGERAYDIFSRLLKERIVCINGPISDDTAHVVVAQLLFLESENPSKPIHMYLN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG+V++GL IYDTMQY+ P+ T C+GQA SM SLLLAAG KG R +LPN+ IMIHQP
Sbjct: 61 SPGGAVSAGLAIYDTMQYIRSPVNTICLGQAASMGSLLLAAGAKGERRALPNATIMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG GQA M
Sbjct: 121 SGGYS---------------------GQAKDMT--------------------------- 132
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
I ++II + +N LY KHTG S++ I K+ Y +
Sbjct: 133 ----------IHTKQIIRVWDSLNALYAKHTGQSLDIIQKNMDRDYFM 170
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 29/32 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+VIE + RGERAYDI+SRLL+ERI+C+ GP+S
Sbjct: 1 MVIEHSSRGERAYDIFSRLLKERIVCINGPIS 32
>gi|187928950|ref|YP_001899437.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12J]
gi|241663134|ref|YP_002981494.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia pickettii
12D]
gi|309781948|ref|ZP_07676679.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|404377636|ref|ZP_10982736.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
gi|187725840|gb|ACD27005.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12J]
gi|240865161|gb|ACS62822.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia
pickettii 12D]
gi|308919292|gb|EFP64958.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Ralstonia sp.
5_7_47FAA]
gi|348611501|gb|EGY61146.1| ATP-dependent Clp protease proteolytic subunit [Ralstonia sp.
5_2_56FAA]
Length = 215
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLESENPDKDISL 84
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV+SGL +YDTMQ++ P ++T C+G A SM + LLAAG KG R +LPNSRIMI
Sbjct: 85 YINSPGGSVSSGLAMYDTMQFIKPDVSTLCMGMAASMGAFLLAAGAKGKRLALPNSRIMI 144
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 145 HQPLGGAR---------------------GQA---------------------------- 155
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L++++N + + TG ++KI + T
Sbjct: 156 ---------SDIEIQAREILYLRERLNTVLSEVTGQPVDKIARDT 191
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQ+GRGERAYDIYSRLL+ER+I ++G V+
Sbjct: 25 LVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVN 59
>gi|338811972|ref|ZP_08624171.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
gi|337275941|gb|EGO64379.1| ATP-dependent Clp protease proteolytic subunit [Acetonema longum
DSM 6540]
Length = 202
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 142/250 (56%), Gaps = 67/250 (26%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
VPIV+EQ+ RGERAYDIYSRLL++RI+ + GPIDD+++++V+AQLLFL+SE +K IH+
Sbjct: 3 FVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPIDDTMANLVIAQLLFLESEDPEKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T C+G A SMA++LL AG KG R++LP +R+MI
Sbjct: 63 YINSPGGVVTAGLAIYDTMQYIKPDVSTICLGLAASMAAILLTAGAKGKRYALPYARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPHGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI 284
TDI+I A EI+ L++ + +H+G +EK+ + D F++
Sbjct: 134 ---------TDIEIHAREILRLREIGADILARHSGQPVEKVQR---------DLERDFFM 175
Query: 285 NGLYVKHTGL 294
+G K GL
Sbjct: 176 SGQEAKEYGL 185
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VPIV+EQ+ RGERAYDIYSRLL++RI+ + GP+
Sbjct: 3 FVPIVVEQSNRGERAYDIYSRLLKDRIVFIGGPID 37
>gi|260432980|ref|ZP_05786951.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
gi|260416808|gb|EEX10067.1| Clp protease [Silicibacter lacuscaerulensis ITI-1157]
Length = 210
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 132/234 (56%), Gaps = 58/234 (24%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
F T LVP+V+EQT RGERAYDI+SRLL+ERI+ + GPI D +S ++VAQLL L+
Sbjct: 2 FDPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIVFINGPIHDGMSHLIVAQLLHLE 61
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ KK I +YINSPGG VTSGL IYDTMQY+ P +T +GQA SM S+LLA GEKGMR
Sbjct: 62 AENPKKEISIYINSPGGVVTSGLAIYDTMQYIKPKCSTLVIGQAASMGSVLLAGGEKGMR 121
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
+LPNSRIM+HQPSGG Q GQA
Sbjct: 122 FALPNSRIMVHQPSGGYQ---------------------GQA------------------ 142
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
+DI I A E LK ++ +Y KHTG S + I K+
Sbjct: 143 -------------------SDIMIHAAETQKLKDRLYDIYAKHTGQSKKTIEKA 177
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
F T LVP+V+EQT RGERAYDI+SRLL+ERI+ + GP+
Sbjct: 2 FDPVDTYMNTLVPMVVEQTSRGERAYDIFSRLLKERIVFINGPI 45
>gi|93007058|ref|YP_581495.1| ATP-dependent Clp protease proteolytic subunit [Psychrobacter
cryohalolentis K5]
gi|92394736|gb|ABE76011.1| ATP-dependent Clp protease proteolytic subunit ClpP [Psychrobacter
cryohalolentis K5]
Length = 231
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/260 (38%), Positives = 147/260 (56%), Gaps = 68/260 (26%)
Query: 35 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQ 94
++ SAT + LVP+V+EQ+ RGER++DI+SRLLRER+I + G ++D +++++VAQLLFL+
Sbjct: 28 YNQSATQA-ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVEDHMANLIVAQLLFLE 86
Query: 95 SESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMR 154
+E+ K IH+YINSPGGSV++GL I+DTM ++ P ++T C+G A SM S LLAAGEKG R
Sbjct: 87 AENPDKDIHLYINSPGGSVSAGLAIFDTMNFIKPEVSTICMGGAYSMGSFLLAAGEKGKR 146
Query: 155 HSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214
++L N+R+MIHQPSGG Q GQA
Sbjct: 147 YALANARVMIHQPSGGAQ---------------------GQA------------------ 167
Query: 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYV 274
TDI+I A EI+ + ++N + + TG ++KI K
Sbjct: 168 -------------------TDIEINAREILKTRARLNEILAERTGQPVDKIEK------- 201
Query: 275 LHDPYICFWINGLYVKHTGL 294
D +W++ K GL
Sbjct: 202 --DVERDYWLDAKEAKEYGL 219
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 371 FHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++ SAT + LVP+V+EQ+ RGER++DI+SRLLRER+I + G V
Sbjct: 28 YNQSATQA-ALVPMVVEQSARGERSFDIFSRLLRERVIFLTGQVE 71
>gi|56551844|ref|YP_162683.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
subsp. mobilis ZM4]
gi|260752594|ref|YP_003225487.1| ATP-dependent Clp protease proteolytic subunit [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|384411291|ref|YP_005620656.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. mobilis ATCC 10988]
gi|67460187|sp|Q5NNY8.1|CLPP_ZYMMO RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|56543418|gb|AAV89572.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. mobilis ZM4]
gi|258551957|gb|ACV74903.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. mobilis NCIMB 11163]
gi|335931665|gb|AEH62205.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Zymomonas
mobilis subsp. mobilis ATCC 10988]
Length = 210
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/137 (62%), Positives = 108/137 (78%)
Query: 36 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQS 95
H A + L+P+V+EQ+ RGER++DIYSRLLRERII V G ++D ++SV+ AQLLFL++
Sbjct: 3 HDHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVEDHMASVICAQLLFLEA 62
Query: 96 ESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRH 155
E+ KK I +YINSPGG VT+GL I+DTMQY+ P + T C+GQA SM S LLAAGE GMR
Sbjct: 63 ENPKKDIFLYINSPGGVVTAGLAIHDTMQYIRPKVGTLCIGQAASMGSFLLAAGEPGMRV 122
Query: 156 SLPNSRIMIHQPSGGVQ 172
+ NSRIMIHQPSGG Q
Sbjct: 123 ATTNSRIMIHQPSGGAQ 139
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 372 HHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
H A + L+P+V+EQ+ RGER++DIYSRLLRERII V G V
Sbjct: 3 HDHADIVNALIPMVVEQSNRGERSFDIYSRLLRERIIFVTGQVE 46
>gi|34558484|ref|NP_908299.1| ATP-dependent Clp protease proteolytic subunit [Wolinella
succinogenes DSM 1740]
gi|60389700|sp|Q7M7M3.1|CLPP_WOLSU RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|34481778|emb|CAE11199.1| ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT [Wolinella
succinogenes]
Length = 195
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 131/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE+TGRGER+YDIYSRLL++RII + G I+D ++S +V+Q+LFL++E +K I++Y
Sbjct: 4 IPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEINDGVASSIVSQMLFLEAEDPEKDIYLY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSG+ IYDTM YV P I T C+GQA SM + LL+ G KG R SLPNSRIMIH
Sbjct: 64 INSPGGVITSGMSIYDTMNYVKPDICTICIGQAASMGAFLLSCGTKGKRFSLPNSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 124 QPLGGAQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+IQA+EI+ LK +NG+ +TG +EKI K T
Sbjct: 134 --------TDIEIQAKEILRLKSILNGILASNTGQPLEKIAKDT 169
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 30/34 (88%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE+TGRGER+YDIYSRLL++RII + G ++
Sbjct: 4 IPYVIEKTGRGERSYDIYSRLLKDRIIMLSGEIN 37
>gi|401565794|ref|ZP_10806612.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
gi|400185000|gb|EJO19235.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Selenomonas sp. FOBRC6]
Length = 203
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 106/127 (83%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDDS+++VVVAQLLFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LL AG G R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|357031709|ref|ZP_09093652.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
morbifer G707]
gi|356414939|gb|EHH68583.1| ATP-dependent Clp protease proteolytic subunit [Gluconobacter
morbifer G707]
Length = 204
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 137/227 (60%), Gaps = 58/227 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
S LVP+V+EQT RGERA+DIYSRLL+ERII + GP+ D +SS++ AQLL+L+S + K
Sbjct: 2 FSNSLVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPVYDQVSSLICAQLLYLESVNPTK 61
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I YINSPGG V++GL IYDTMQY+ P++T C+GQA SM SLLLA GEK R++LPN+
Sbjct: 62 EISFYINSPGGVVSAGLAIYDTMQYIRCPVSTVCIGQAASMGSLLLAGGEKNHRYALPNA 121
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+M+HQPSGG Q GQA
Sbjct: 122 RVMVHQPSGGAQ---------------------GQA------------------------ 136
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
+DI+IQA EI+ +++++N +Y +HTG ++E+I +
Sbjct: 137 -------------SDIEIQAREILIIRQRLNEIYREHTGQTLEQIER 170
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 32/38 (84%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
S LVP+V+EQT RGERA+DIYSRLL+ERII + GPV
Sbjct: 2 FSNSLVPMVVEQTSRGERAFDIYSRLLQERIIFLTGPV 39
>gi|294670412|ref|ZP_06735294.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307876|gb|EFE49119.1| hypothetical protein NEIELOOT_02131 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 211
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 134/225 (59%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GP+ D +++VVAQ+LFL+SE+ K I
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDHTANLVVAQMLFLESENPDKDIFF 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YI+SPGGSVT+G+ ++DTM ++ P ++T C+GQA SM + LL+AG KG R +LPNSRIMI
Sbjct: 70 YIDSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I LK+++N L KHTG +EK+ + T
Sbjct: 144 ----------DIEIHARELIKLKQKLNELLAKHTGQPLEKVERDT 178
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVT 44
>gi|350546001|ref|ZP_08915432.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Burkholderia kirkii UZHbot1]
gi|350526222|emb|CCD41030.1| ATP-dependent Clp protease proteolytic subunit [Candidatus
Burkholderia kirkii UZHbot1]
Length = 217
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+E +GRGERAYDIYSRLL+ER++ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPMVVETSGRGERAYDIYSRLLKERVVFLVGEVNDQSANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLAAG KG R +LPN+R+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCIGLAASMGAFLLAAGAKGKRVTLPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGTR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ LK+++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLKERLNQLLSHHTGQPVERIARDT 192
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+E +GRGERAYDIYSRLL+ER++ ++G V+
Sbjct: 26 LVPMVVETSGRGERAYDIYSRLLKERVVFLVGEVN 60
>gi|334128684|ref|ZP_08502565.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
gi|333386421|gb|EGK57635.1| ATP-dependent Clp protease, protease subunit [Centipeda periodontii
DSM 2778]
Length = 203
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 106/127 (83%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDDS+++VVVAQLLFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQLLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LL AG G R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAAGKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|127513436|ref|YP_001094633.1| ATP-dependent Clp protease proteolytic subunit [Shewanella loihica
PV-4]
gi|171855248|sp|A3QFX6.1|CLPP_SHELP RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|126638731|gb|ABO24374.1| ATP-dependent Clp protease proteolytic subunit ClpP [Shewanella
loihica PV-4]
Length = 203
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G +++ +++++VAQLLFL+SES K I++
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G KG RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAKGKRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + HTG +E I + T
Sbjct: 143 ---------SDIAIHAQEILGIKNKLNQMLADHTGQPLEVIERDT 178
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G V
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVE 46
>gi|340028581|ref|ZP_08664644.1| ATP-dependent Clp protease proteolytic subunit [Paracoccus sp. TRP]
Length = 209
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDI+SRLL+ERII + G + D +++++ AQLLFL++E+ K I M
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGQVHDGMATLISAQLLFLEAENPTKDISM 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTMQY+ P ++T VGQA SM SLLL AG+ GMR SLPNSR+M+
Sbjct: 72 YINSPGGVVTAGLSIYDTMQYIKPRVSTLVVGQAASMGSLLLCAGQPGMRFSLPNSRVMV 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQPSGG Q GQA
Sbjct: 132 HQPSGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKS 268
TDI I A E LK+++N +YVKHTG + ++ ++
Sbjct: 143 ---------TDILIHARETEKLKRRLNEIYVKHTGRELSEVEEA 177
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+V+EQT RGERAYDI+SRLL+ERII + G V
Sbjct: 12 LVPMVVEQTSRGERAYDIFSRLLKERIIFLSGQV 45
>gi|149911805|ref|ZP_01900408.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
gi|149805105|gb|EDM65128.1| ATP-dependent Clp protease proteolytic subunit [Moritella sp. PE36]
Length = 207
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 135/228 (59%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S LVP+V+EQT +GER+YDIYSRLL++R+I + G ++D ++++VVAQLLFL+SE+ K
Sbjct: 13 SNTLVPMVVEQTAKGERSYDIYSRLLKDRVIFLTGQVEDHMANLVVAQLLFLESENPDKD 72
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I +YINSPGGSV++G+ IYDTMQ++ P ++T C+G A SM + LLA GEKG RH+LPN++
Sbjct: 73 IFLYINSPGGSVSAGMSIYDTMQFIKPNVSTICMGMAASMGAFLLAGGEKGKRHALPNAK 132
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
IMIHQP GG Q GQA
Sbjct: 133 IMIHQPLGGYQ---------------------GQA------------------------- 146
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EII K+++N + +HTG +++ + T
Sbjct: 147 ------------SDIEIHANEIIKTKRKLNEILAEHTGQEYDRLARDT 182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 31/38 (81%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
S LVP+V+EQT +GER+YDIYSRLL++R+I + G V
Sbjct: 13 SNTLVPMVVEQTAKGERSYDIYSRLLKDRVIFLTGQVE 50
>gi|410462600|ref|ZP_11316168.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409984260|gb|EKO40581.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 202
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/224 (45%), Positives = 132/224 (58%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+PIVIE TGR ERAYDIYSRLLR+RII + +DD +++++ AQLLFL+SE +K I MY
Sbjct: 4 IPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDYVANLICAQLLFLESEDPEKEIFMY 63
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG V++GL IYDTMQYV+PP++T C+GQA SM +LLL AG G+R++LP+SRIMIH
Sbjct: 64 INSPGGVVSAGLAIYDTMQYVMPPVSTLCLGQAASMGALLLCAGATGLRYALPHSRIMIH 123
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QPSGG Q GQA
Sbjct: 124 QPSGGYQ---------------------GQA----------------------------- 133
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A+E ++ +N + KHTG S+E+I T
Sbjct: 134 --------TDIEIHAKETRRTRETLNEIMAKHTGQSMERIQVDT 169
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 28/36 (77%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+PIVIE TGR ERAYDIYSRLLR+RII + V Y
Sbjct: 4 IPIVIETTGRTERAYDIYSRLLRDRIILLGSAVDDY 39
>gi|304407481|ref|ZP_07389133.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
gi|304343432|gb|EFM09274.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Paenibacillus
curdlanolyticus YK9]
Length = 193
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL++RII + IDD +++ ++AQLLFL ++ +K IH+
Sbjct: 3 LVPIVVEQTNRGERSYDIYSRLLKDRIIFLGSAIDDDVANSIIAQLLFLAADDPEKDIHL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+GI+DTMQ++ P ++T CVG A SM SLLL AG KG R SLPNS +MI
Sbjct: 63 YINSPGGSVTAGMGIFDTMQFIKPDVSTICVGMAASMGSLLLTAGAKGKRFSLPNSEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 123 HQPLGGVR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ II K+++N +YV+ TG EKI + T
Sbjct: 134 ---------SDIKIHADWIIKTKQKLNQIYVERTGQPYEKIERDT 169
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVPIV+EQT RGER+YDIYSRLL++RII
Sbjct: 3 LVPIVVEQTNRGERSYDIYSRLLKDRII 30
>gi|329122525|ref|ZP_08251109.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
ATCC 11116]
gi|327473154|gb|EGF18577.1| ATP-dependent Clp protease, protease subunit [Haemophilus aegyptius
ATCC 11116]
Length = 211
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 132/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+V+EQT RGER+YDIYSRLL+ER+I + G ++D +++++VAQLLFL+SE K I++
Sbjct: 21 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVEDRMANLIVAQLLFLESEDPTKDINI 80
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P I T C+GQACSM + LLA G G R +LPN+R+MI
Sbjct: 81 YINSPGGSVTAGMAIYDTMQFIKPDIRTLCIGQACSMGAFLLAGGTAGKRAALPNARVMI 140
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 141 HQPLGGFR---------------------GQA---------------------------- 151
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DIQI A+EI+ +K +N HTG SIE+I K T
Sbjct: 152 ---------SDIQIHAQEILKIKHTLNDRLAFHTGQSIERIEKDT 187
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
++P+V+EQT RGER+YDIYSRLL+ER+I + G V
Sbjct: 21 VIPMVVEQTSRGERSYDIYSRLLKERVIFLSGEVE 55
>gi|335038541|ref|ZP_08531774.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334181561|gb|EGL84093.1| ATP-dependent Clp protease proteolytic subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 196
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 131/226 (57%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+P VIEQT RGERAYDIYSRLL++RII + PIDD +++ VVAQLLFL +E +K I
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPIDDQVANAVVAQLLFLAAEDPEKDIS 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+YINSPGGS+T+G+ IYDTMQY+ P ++T C+G A SM + LLAAGEKG R +LPNS +M
Sbjct: 62 LYINSPGGSITAGMAIYDTMQYIKPKVSTICIGLAASMGAFLLAAGEKGKRFALPNSEVM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPLGGTQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ I+ ++ ++N + + TG +E+I + T
Sbjct: 134 ----------SDIEIHAKRILKMRDRLNKILAERTGQPLERIERDT 169
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 30/36 (83%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
PL+P VIEQT RGERAYDIYSRLL++RII + P+
Sbjct: 2 PLIPTVIEQTNRGERAYDIYSRLLKDRIIFLGTPID 37
>gi|444920189|ref|ZP_21240032.1| ATP-dependent Clp protease proteolytic subunit [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508508|gb|ELV08677.1| ATP-dependent Clp protease proteolytic subunit [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 202
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 109/128 (85%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQ+ RGERA+DIYSRLL++R+I ++GP+DD +++VVAQ+LFL++E+ + IH+
Sbjct: 12 LVPMVVEQSARGERAFDIYSRLLKDRVIFLVGPVDDYSANLVVAQMLFLEAENPDRDIHL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG +G R SLPNSRIMI
Sbjct: 72 YINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQACSMGAFLLTAGAEGKRLSLPNSRIMI 131
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 132 HQPLGGYQ 139
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQ+ RGERA+DIYSRLL++R+I ++GPV Y
Sbjct: 12 LVPMVVEQSARGERAFDIYSRLLKDRVIFLVGPVDDY 48
>gi|330503117|ref|YP_004379986.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
mendocina NK-01]
gi|328917403|gb|AEB58234.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
mendocina NK-01]
Length = 213
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++G ++D +++++ AQLLFL++E+ K IH+
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLICAQLLFLEAENPDKDIHL 78
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ ++T C+GQACSM + LLA G KG R LPNSR+MI
Sbjct: 79 YINSPGGSVTAGMAIYDTMQFIKADVSTTCIGQACSMGAFLLAGGAKGKRFCLPNSRVMI 138
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 139 HQPLGGFQ---------------------GQA---------------------------- 149
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L HTG S+E I + T
Sbjct: 150 ---------SDIEIHAKEILFIRERLNELLAHHTGQSLETIERDT 185
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+VIEQ+ RGERAYDIYSRLL+ER+I ++G V Y
Sbjct: 19 LVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDY 55
>gi|378951824|ref|YP_005209312.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens F113]
gi|359761838|gb|AEV63917.1| ATP-dependent Clp protease proteolytic subunit [Pseudomonas
fluorescens F113]
Length = 190
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/222 (42%), Positives = 136/222 (61%), Gaps = 58/222 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+VIEQ+ RGERAYDIYSRLL+ER+I ++GP++D +++++ AQLLFL++E+ K IH+YIN
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGGSVT+G+ IYDTMQ++ P ++T C+GQACSM + LL AG G R+ LPNSR+MIHQP
Sbjct: 61 SPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAHGKRYCLPNSRVMIHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
GG Q GQA
Sbjct: 121 LGGFQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+EI+ +++++N L KH+G ++E+I + T
Sbjct: 129 ------SDIEIHAKEILFIRERLNTLMAKHSGRTLEEIERDT 164
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
+VIEQ+ RGERAYDIYSRLL+ER+I ++GPV Y
Sbjct: 1 MVIEQSARGERAYDIYSRLLKERVIFLVGPVEDY 34
>gi|87121308|ref|ZP_01077198.1| putative ATP-dependent Clp protease, proteolytic subunit
[Marinomonas sp. MED121]
gi|86163465|gb|EAQ64740.1| putative ATP-dependent Clp protease, proteolytic subunit
[Marinomonas sp. MED121]
Length = 210
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 137/231 (59%), Gaps = 58/231 (25%)
Query: 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESS 98
A S LVP+VIEQT RGER++DIYSRLL+ER+I ++G ++D ++++VVAQLLFL+SE+
Sbjct: 12 AITSAGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVEDHMANLVVAQLLFLESENP 71
Query: 99 KKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158
K IH+YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM +LLL AG G R+ LP
Sbjct: 72 DKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTMCIGQAASMGALLLTAGAAGKRYCLP 131
Query: 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218
NSR+MIHQP GG Q GQA
Sbjct: 132 NSRVMIHQPLGGYQ---------------------GQA---------------------- 148
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I EI+++K ++N + HTG IE++ + T
Sbjct: 149 ---------------SDIEIHTREILSIKHRLNEIISFHTGKPIEEVAEDT 184
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 375 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
A S LVP+VIEQT RGER++DIYSRLL+ER+I ++G V
Sbjct: 12 AITSAGLVPMVIEQTARGERSFDIYSRLLKERVIFLVGQVE 52
>gi|422344962|ref|ZP_16425885.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
F0398]
gi|355376104|gb|EHG23365.1| ATP-dependent Clp protease proteolytic subunit [Selenomonas noxia
F0398]
Length = 203
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 106/127 (83%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
VP+V+E + RGERAYDIYSRLL+ERII + GPIDDS+++VVVAQ+LFL+SE K IH+Y
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPIDDSVANVVVAQMLFLESEDPDKDIHLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG VT+GL IYDTMQY+ P ++T C+GQA SM S+LL AG K R++LP++RIMIH
Sbjct: 65 INSPGGVVTAGLAIYDTMQYIKPDVSTICIGQAASMGSILLTAGAKAKRYALPHARIMIH 124
Query: 166 QPSGGVQ 172
QP GG Q
Sbjct: 125 QPLGGAQ 131
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
VP+V+E + RGERAYDIYSRLL+ERII + GP+
Sbjct: 5 VPMVVENSSRGERAYDIYSRLLKERIIFLGGPID 38
>gi|84686590|ref|ZP_01014483.1| Protease subunit of ATP-dependent Clp protease [Maritimibacter
alkaliphilus HTCC2654]
gi|84665503|gb|EAQ11980.1| Protease subunit of ATP-dependent Clp protease [Rhodobacterales
bacterium HTCC2654]
Length = 193
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 127/218 (58%), Gaps = 58/218 (26%)
Query: 48 IVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYIN 107
+V+EQT RGERAYDI+SRLL+ERII + GP+ D +SS++ AQLLFL++E+ K I MYIN
Sbjct: 1 MVVEQTSRGERAYDIFSRLLKERIIFLNGPVHDGMSSLICAQLLFLEAENPSKEIAMYIN 60
Query: 108 SPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167
SPGG VTSGL IYDTMQY+ P ++T +GQA SM SLLL AG GMR SLPNSRIM+HQP
Sbjct: 61 SPGGVVTSGLSIYDTMQYIRPKVSTLVIGQAASMGSLLLTAGAPGMRFSLPNSRIMVHQP 120
Query: 168 SGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227
SGG Q GQA
Sbjct: 121 SGGYQ---------------------GQA------------------------------- 128
Query: 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI I A+E LK ++N +YVKHTG ++ +
Sbjct: 129 ------TDIMIHAQETQKLKDRLNSIYVKHTGQKLKAV 160
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 384 IVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+V+EQT RGERAYDI+SRLL+ERII + GPV
Sbjct: 1 MVVEQTSRGERAYDIFSRLLKERIIFLNGPV 31
>gi|223042116|ref|ZP_03612288.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
minor 202]
gi|240950344|ref|ZP_04754614.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
minor NM305]
gi|223017093|gb|EEF15533.1| ATP-dependent Clp protease proteolytic subunit [Actinobacillus
minor 202]
gi|240295155|gb|EER45974.1| ATP-dependent Clp protease proteolytic subunit ClpP [Actinobacillus
minor NM305]
Length = 197
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+V+EQT +GER+YDIYSRLL+ERII + G ++D++++++VAQLLFL++E +K I++
Sbjct: 3 LIPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVEDNMANLIVAQLLFLEAEDPEKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+GL IYDTM ++ P +AT C GQACSM + LL+ G KG R +LPN+R+MI
Sbjct: 63 YINSPGGVVTAGLAIYDTMNFIKPDVATLCTGQACSMGAFLLSGGAKGKRFALPNARVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGAR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQIQA+EI+ LK+ + +H+G S +K+ T
Sbjct: 134 ---------TDIQIQAQEILKLKEMLTRKMAEHSGQSFDKVAADT 169
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+V+EQT +GER+YDIYSRLL+ERII + G V
Sbjct: 3 LIPMVVEQTSKGERSYDIYSRLLKERIIFLNGQVE 37
>gi|226706473|sp|B8CRF7.1|CLPP_SHEPW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|212557511|gb|ACJ29965.1| Peptidase S14, ClpP [Shewanella piezotolerans WP3]
Length = 203
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G +++ +++++VAQLLFL+SES K I++
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVEEHMANLIVAQLLFLESESPDKDIYL 71
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTMQ++ P ++T C+GQA SM + LLA G +G RH LPNSR+MI
Sbjct: 72 YINSPGGSVTAGMAIYDTMQFIKPNVSTVCIGQAASMGAFLLAGGAEGKRHCLPNSRVMI 131
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 132 HQPLGGFQ---------------------GQA---------------------------- 142
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A+EI+ +K ++N + +HTG IE I + T
Sbjct: 143 ---------SDIAIHAQEILGIKNKLNTMLAEHTGQPIEVIERDT 178
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+V+EQT +GER+YDIYSRLL+ER+I ++G V
Sbjct: 12 LVPMVVEQTAKGERSYDIYSRLLKERVIFLVGQVE 46
>gi|312128165|ref|YP_003993039.1| ATP-dependent clp protease, proteolytic subunit clpp
[Caldicellulosiruptor hydrothermalis 108]
gi|312134617|ref|YP_004001955.1| ATP-dependent clp protease, proteolytic subunit clpp
[Caldicellulosiruptor owensensis OL]
gi|312792981|ref|YP_004025904.1| ATP-dependent clp protease, proteolytic subunit clpp
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|344996808|ref|YP_004799151.1| ATP-dependent Clp protease proteolytic subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|311774668|gb|ADQ04155.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Caldicellulosiruptor owensensis OL]
gi|311778184|gb|ADQ07670.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Caldicellulosiruptor hydrothermalis 108]
gi|312180121|gb|ADQ40291.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|343965027|gb|AEM74174.1| ATP-dependent Clp protease proteolytic subunit
[Caldicellulosiruptor lactoaceticus 6A]
Length = 195
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 130/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RI+ + G I D ++S++VAQLLFL++E K I++
Sbjct: 4 LVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G IYDTMQY+ P ++T CVG A SM + LLAAG KG R +LPNS IMI
Sbjct: 64 YINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 124 HQPLGGVR---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I AE I+ +K +IN + + TG IE I + T
Sbjct: 135 ---------TDIKIHAEWILKIKNRINKILSERTGQPIEVIERDT 170
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDIYSRLL++RI+ + G ++
Sbjct: 4 LVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEIT 38
>gi|365921027|ref|ZP_09445329.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Cardiobacterium valvarum F0432]
gi|364576924|gb|EHM54220.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Cardiobacterium valvarum F0432]
Length = 206
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 137/225 (60%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P+VIEQTGRGER+YDIYSRLL+ER+I ++GP++D+ +++VVAQLLFL++E+ + IH+
Sbjct: 8 LIPMVIEQTGRGERSYDIYSRLLKERVIFLVGPVNDASANLVVAQLLFLEAENPDQDIHL 67
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ IYDTM ++ P ++T C+GQA SM + LL+AG +G R++LP+SR+MI
Sbjct: 68 YINSPGGSVTAGMSIYDTMNFIKPDVSTLCLGQAASMGAFLLSAGTRGKRYALPHSRVMI 127
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 128 HQPL--ISGGLG-----------------GQAS--------------------------- 141
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E++ K +N L KH+G +EKI + T
Sbjct: 142 ----------DIEIHARELLKTKATLNELLAKHSGQPLEKIERDT 176
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 34/35 (97%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P+VIEQTGRGER+YDIYSRLL+ER+I ++GPV+
Sbjct: 8 LIPMVIEQTGRGERSYDIYSRLLKERVIFLVGPVN 42
>gi|114567171|ref|YP_754325.1| ATP-dependent Clp protease proteolytic subunit [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|122317850|sp|Q0AWF0.1|CLPP_SYNWW RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|114338106|gb|ABI68954.1| ATP-dependent Clp protease proteolytic subunit ClpP [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 200
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 136/231 (58%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGER+YDIYSRLL++RII + IDD+++++V+AQLLFL++E K I +
Sbjct: 4 LVPMVVEQTNRGERSYDIYSRLLKDRIIFLGSGIDDTVANLVIAQLLFLEAEDPDKDISL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDT+QY+ P ++T CVG A SM + LLAAG+KG R++LPN+ IMI
Sbjct: 64 YINSPGGSITAGMAIYDTLQYIRPDVSTICVGLAASMGAFLLAAGKKGKRYALPNAEIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP+GG Q GQA
Sbjct: 124 HQPAGGTQ---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
TDI+I A I+N+K+ +N + + TG +E+I K T Y +
Sbjct: 135 ---------TDIEIHARRIMNMKESLNKILAERTGQPLERIQKDTDRDYFM 176
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 27/28 (96%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVP+V+EQT RGER+YDIYSRLL++RII
Sbjct: 4 LVPMVVEQTNRGERSYDIYSRLLKDRII 31
>gi|373457870|ref|ZP_09549637.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
gi|371719534|gb|EHO41305.1| ATP-dependent Clp protease proteolytic subunit [Caldithrix abyssi
DSM 13497]
Length = 206
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 134/226 (59%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PLVPIVIEQTGR ERAYDIYSRLL+ERI+ + PIDD+++S++++QLLFL++E K I+
Sbjct: 2 PLVPIVIEQTGRSERAYDIYSRLLKERIVFLGTPIDDNVASLIISQLLFLEAEDPTKDIY 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+YINSPGG V+SGL IYDTM+Y+ P + T C+GQA SM ++LLAAG KG R++LP++RIM
Sbjct: 62 LYINSPGGIVSSGLAIYDTMRYIKPDVVTTCMGQAASMGAVLLAAGAKGKRYALPHARIM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG + GQA
Sbjct: 122 IHQPLGGAE---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EI+ +KK +N + TG +EKI + T
Sbjct: 134 ----------SDIAIAANEILRIKKVLNQILADATGKPLEKIEQDT 169
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 31/36 (86%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
PLVPIVIEQTGR ERAYDIYSRLL+ERI+ + P+
Sbjct: 2 PLVPIVIEQTGRSERAYDIYSRLLKERIVFLGTPID 37
>gi|397905705|ref|ZP_10506547.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
gi|397161224|emb|CCJ33882.1| ATP-dependent Clp protease proteolytic subunit [Caloramator
australicus RC3]
Length = 196
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 131/225 (58%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLL+ERII + I+D +++V+AQLLFL+SE K I++
Sbjct: 3 LVPIVVEQTARGERSYDIYSRLLKERIIFLGDEINDQTANLVIAQLLFLESEDPDKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +++GL IYDTMQY+ P ++T CVG A SMA++LLAAG KG R +LPNS IMI
Sbjct: 63 YINSPGGVISAGLAIYDTMQYIKPDVSTICVGMAASMAAVLLAAGAKGKRFALPNSEIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGAR---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI I AE I+ LKK++N + + TG IE+I K T
Sbjct: 134 ---------TDIAIHAEHILKLKKRLNEILSERTGQPIERIEKDT 169
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 27/28 (96%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERII 408
LVPIV+EQT RGER+YDIYSRLL+ERII
Sbjct: 3 LVPIVVEQTARGERSYDIYSRLLKERII 30
>gi|254197976|ref|ZP_04904398.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
gi|169654717|gb|EDS87410.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Burkholderia
pseudomallei S13]
Length = 217
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G ++D +++VVAQLLFL+SE+ K I +
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVNDQTANLVVAQLLFLESENPDKDISL 85
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSV++G+ IYDTMQ+V P ++T C+G A SM + LLA+G +G R++LPN+R+MI
Sbjct: 86 YINSPGGSVSAGMAIYDTMQFVKPDVSTLCMGLAASMGAFLLASGARGKRYALPNARVMI 145
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 146 HQPLGGAR---------------------GQA---------------------------- 156
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+IQA EI+ L+ ++N L HTG +E+I + T
Sbjct: 157 ---------SDIEIQAREILYLRDRLNHLLAHHTGQDVERIARDT 192
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+E +GRGER+YDIYSRLL+ERI+ ++G V+
Sbjct: 26 LVPIVVETSGRGERSYDIYSRLLKERIVFMVGEVN 60
>gi|306820816|ref|ZP_07454440.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|402310280|ref|ZP_10829246.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
gi|304551134|gb|EFM39101.1| ATP-dependent Clp protease proteolytic subunit [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|400368732|gb|EJP21739.1| ATP-dependent Clp endopeptidase, proteolytic subunit ClpP
[Eubacterium sp. AS15]
Length = 195
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 130/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
+P VIEQT RGER+YDIYSRLL+ERII + ++D +S++VAQLLFL+SE K IH
Sbjct: 3 FIPYVIEQTSRGERSYDIYSRLLKERIIFLGDEVNDQTASLIVAQLLFLESEDPDKDIHF 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQ++ P ++T CVG A SM + LL++G+KG R++LPNS IMI
Sbjct: 63 YINSPGGSITAGMAIYDTMQHIKPDVSTICVGMAASMGAFLLSSGKKGKRYALPNSEIMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 123 HQPLGGTK---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDIQI AE II L+K++N + + TG SIE I K T
Sbjct: 134 ---------TDIQIHAERIIRLRKKLNEIMAEQTGKSIEIINKDT 169
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIEQT RGER+YDIYSRLL+ERII + V+
Sbjct: 3 FIPYVIEQTSRGERSYDIYSRLLKERIIFLGDEVN 37
>gi|302871325|ref|YP_003839961.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Caldicellulosiruptor obsidiansis OB47]
gi|302574184|gb|ADL41975.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Caldicellulosiruptor obsidiansis OB47]
Length = 195
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 130/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIVIEQT RGERAYDIYSRLL++RI+ + G I D ++S++VAQLLFL++E K I++
Sbjct: 4 LVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G IYDTMQY+ P ++T CVG A SM + LLAAG KG R +LPNS IMI
Sbjct: 64 YINSPGGSVTAGFAIYDTMQYIKPDVSTICVGMAASMGAFLLAAGAKGKRFALPNSEIMI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GGV+ GQA
Sbjct: 124 HQPLGGVR---------------------GQA---------------------------- 134
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I AE I+ +K +IN + + TG IE I + T
Sbjct: 135 ---------TDIKIHAEWILKIKNRINKILSERTGQPIEVIERDT 170
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIVIEQT RGERAYDIYSRLL++RI+ + G ++
Sbjct: 4 LVPIVIEQTNRGERAYDIYSRLLKDRIVILSGEIT 38
>gi|407007733|gb|EKE23312.1| hypothetical protein ACD_6C00528G0009 [uncultured bacterium]
Length = 201
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 137/230 (59%), Gaps = 58/230 (25%)
Query: 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSK 99
T+ LVP+V+EQ+ RGER++DIYSRLLRER+I + G ++D++++++VAQ+LFL++E+
Sbjct: 5 TIENALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVEDNMANLIVAQMLFLEAENPD 64
Query: 100 KPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159
K IH+YINSPGGSVT+G+ IYDTMQ++ P + T+C+GQA SM + LL AG KG R+ L N
Sbjct: 65 KDIHLYINSPGGSVTAGMAIYDTMQFIKPDVVTYCMGQAASMGAFLLNAGTKGKRYCLEN 124
Query: 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
+R+MIHQP GG + GQA
Sbjct: 125 ARVMIHQPLGGFR---------------------GQA----------------------- 140
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A EI+ +K+++N L +H+G EK+ + T
Sbjct: 141 --------------SDIEIHAREILFIKERLNRLMAEHSGQDYEKVARDT 176
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 376 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
T+ LVP+V+EQ+ RGER++DIYSRLLRER+I + G V
Sbjct: 5 TIENALVPMVVEQSSRGERSFDIYSRLLRERVIFMTGEVE 44
>gi|321265634|ref|XP_003197533.1| ATP-dependent Clp protease proteolytic subunit [Cryptococcus gattii
WM276]
gi|317464013|gb|ADV25746.1| ATP-dependent Clp protease proteolytic subunit, putative
[Cryptococcus gattii WM276]
Length = 260
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 107/128 (83%), Gaps = 1/128 (0%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVPIV+EQT RGER+YDIYSRLLRER++ +GP++ S+++ AQLLFL++E K+PI +
Sbjct: 55 LVPIVVEQTARGERSYDIYSRLLRERVV-FLGPVNSQDSTLLTAQLLFLEAEDPKRPIKL 113
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VTSGL IYDTMQY+ PP+ T+C+GQA SM SLLLA GEKG R++L NS +MI
Sbjct: 114 YINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSVMI 173
Query: 165 HQPSGGVQ 172
HQPSGG Q
Sbjct: 174 HQPSGGAQ 181
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 73/97 (75%)
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
++ I+ P G V GL IYDTMQY+ PP+ T+C+GQA SM SLLLA GEKG R++L NS +
Sbjct: 112 KLYINSPGGVVTSGLAIYDTMQYISPPVHTFCMGQAASMGSLLLAGGEKGHRYALKNSSV 171
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257
MIHQPSGG QGQA+DI + A+EI+ ++ + +Y +H
Sbjct: 172 MIHQPSGGAQGQASDIALHAKEILRIRAALTDIYAEH 208
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%), Gaps = 1/35 (2%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVPIV+EQT RGER+YDIYSRLLRER++ +GPV+
Sbjct: 55 LVPIVVEQTARGERSYDIYSRLLRERVV-FLGPVN 88
>gi|71281884|ref|YP_270452.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
psychrerythraea 34H]
gi|110816457|sp|Q47XL8.1|CLPP_COLP3 RecName: Full=ATP-dependent Clp protease proteolytic subunit;
AltName: Full=Endopeptidase Clp
gi|71147624|gb|AAZ28097.1| ATP-dependent Clp protease, proteolytic subunit ClpP [Colwellia
psychrerythraea 34H]
Length = 220
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 138/229 (60%), Gaps = 58/229 (25%)
Query: 41 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKK 100
+ LVP+V+EQT +GER+YDIYSRLL+ER+I + G ++D ++++++AQLLFL+SES K
Sbjct: 23 IESALVPMVVEQTAKGERSYDIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDK 82
Query: 101 PIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160
I++YINSPGGSVT+G+ IYDTM+++ P I+T C+GQA SM + LL+ GEKG R+ LPN+
Sbjct: 83 DIYLYINSPGGSVTAGMAIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYCLPNA 142
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
R+MIHQP GG Q GQA
Sbjct: 143 RVMIHQPLGGFQ---------------------GQA------------------------ 157
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+D +I A+EI+ +K ++N L +HTG +++K+ + T
Sbjct: 158 -------------SDFEIHAKEILFIKDKLNKLMAEHTGQTLDKVSQDT 193
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 377 LSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+ LVP+V+EQT +GER+YDIYSRLL+ER+I + G V
Sbjct: 23 IESALVPMVVEQTAKGERSYDIYSRLLKERVIFLCGQVE 61
>gi|289207758|ref|YP_003459824.1| ATP-dependent Clp protease proteolytic subunit ClpP
[Thioalkalivibrio sp. K90mix]
gi|288943389|gb|ADC71088.1| ATP-dependent Clp protease, proteolytic subunit ClpP
[Thioalkalivibrio sp. K90mix]
Length = 224
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 136/225 (60%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+V+EQT RGERAYDIYSRLL++R+I +GP++D +++V+VAQLLFL+SE+ K I +
Sbjct: 18 LVPMVVEQTARGERAYDIYSRLLKDRVIFCVGPVEDYMANVIVAQLLFLESENPDKEISL 77
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VT+G+ IYDTMQ++ P ++T CVGQA SM ++LLA G G R+SLP+SR+MI
Sbjct: 78 YINSPGGAVTAGMAIYDTMQFIKPQVSTLCVGQAASMGAVLLAGGAPGKRYSLPHSRVMI 137
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 138 HQPLGGFQ---------------------GQA---------------------------- 148
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI I A EI+ +++++N + HTG ++E++ + T
Sbjct: 149 ---------SDIDIHAREILKIREELNRVLAHHTGQTVEQVEQDT 184
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLY 417
LVP+V+EQT RGERAYDIYSRLL++R+I +GPV Y
Sbjct: 18 LVPMVVEQTARGERAYDIYSRLLKDRVIFCVGPVEDY 54
>gi|329120061|ref|ZP_08248731.1| ATP-dependent Clp protease, protease subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327463592|gb|EGF09910.1| ATP-dependent Clp protease, protease subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 211
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 134/225 (59%), Gaps = 56/225 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GP++D +++VVAQ+LFL+SE+ K I
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLIGPVNDHTANLVVAQMLFLESENPDKDIFF 69
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G+ ++DTM ++ P ++T C+GQA SM + LL+AG KG R +LP+SR+MI
Sbjct: 70 YINSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPHSRVMI 129
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP + GLG GQA
Sbjct: 130 HQPL--ISGGLG-----------------GQAS--------------------------- 143
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+I A E+I LK+ +N L KHTG IEKI + T
Sbjct: 144 ----------DIEIHARELIKLKQTLNELLAKHTGQPIEKIERDT 178
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 33/35 (94%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L+P VIEQ+GRGERA+DIYSRLL+ERII ++GPV+
Sbjct: 10 LIPTVIEQSGRGERAFDIYSRLLKERIIFLIGPVN 44
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,250,639,449
Number of Sequences: 23463169
Number of extensions: 290777244
Number of successful extensions: 845459
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5815
Number of HSP's successfully gapped in prelim test: 622
Number of HSP's that attempted gapping in prelim test: 825610
Number of HSP's gapped (non-prelim): 18381
length of query: 486
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 339
effective length of database: 8,910,109,524
effective search space: 3020527128636
effective search space used: 3020527128636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 79 (35.0 bits)