BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18232
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|B Chain B, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|C Chain C, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|D Chain D, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|E Chain E, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|F Chain F, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
pdb|1TG6|G Chain G, Crystallography And Mutagenesis Point To An Essential Role
For The N- Terminus Of Human Mitochondrial Clpp
Length = 277
Score = 254 bits (648), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 154/235 (65%), Gaps = 58/235 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQL
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQL 103
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
LFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 104 LFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGT 163
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 164 PGMRHSLPNSRIMIHQPSGGAR---------------------GQA-------------- 188
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
TDI IQAEEI+ LKKQ+ +Y KHT S++ I
Sbjct: 189 -----------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI 220
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 44 LQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPID 92
>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|B Chain B, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|C Chain C, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|D Chain D, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|E Chain E, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|F Chain F, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|G Chain G, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|H Chain H, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|I Chain I, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|J Chain J, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|K Chain K, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|L Chain L, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|M Chain M, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1TYF|N Chain N, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests
A Model For Atp-Dependent Proteolysis
pdb|1YG6|A Chain A, Clpp
pdb|1YG6|B Chain B, Clpp
pdb|1YG6|C Chain C, Clpp
pdb|1YG6|D Chain D, Clpp
pdb|1YG6|E Chain E, Clpp
pdb|1YG6|F Chain F, Clpp
pdb|1YG6|G Chain G, Clpp
pdb|1YG6|H Chain H, Clpp
pdb|1YG6|I Chain I, Clpp
pdb|1YG6|J Chain J, Clpp
pdb|1YG6|K Chain K, Clpp
pdb|1YG6|L Chain L, Clpp
pdb|1YG6|M Chain M, Clpp
pdb|1YG6|N Chain N, Clpp
pdb|2FZS|A Chain A, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|B Chain B, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|C Chain C, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|D Chain D, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|E Chain E, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|F Chain F, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|G Chain G, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|H Chain H, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|I Chain I, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|J Chain J, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|K Chain K, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|L Chain L, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|M Chain M, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
pdb|2FZS|N Chain N, Crystal Structure Of E. Coli Clpp With A Peptide
Chloromethyl Ketone Covalently Bound At The Active Site
Length = 193
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MI
Sbjct: 62 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGYQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L HTG S+E+I + T
Sbjct: 133 ---------TDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT 168
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVE 36
>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|S Chain S, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|T Chain T, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|U Chain U, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|O Chain O, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|P Chain P, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Q Chain Q, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Y Chain Y, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|Z Chain Z, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|AA Chain a, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|BB Chain b, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|V Chain V, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|W Chain W, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|X Chain X, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|M Chain M, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|L Chain L, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|K Chain K, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|J Chain J, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|I Chain I, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|H Chain H, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|N Chain N, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|F Chain F, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|E Chain E, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|D Chain D, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|C Chain C, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|B Chain B, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|A Chain A, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
pdb|3MT6|G Chain G, Structure Of Clpp From Escherichia Coli In Complex With
Adep1
Length = 207
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 16 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 75
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MI
Sbjct: 76 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 135
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 136 HQPLGGYQ---------------------GQA---------------------------- 146
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L HTG S+E+I + T
Sbjct: 147 ---------TDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT 182
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 16 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVE 50
>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|B Chain B, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|C Chain C, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|D Chain D, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|E Chain E, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|F Chain F, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|G Chain G, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|H Chain H, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|I Chain I, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|J Chain J, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|K Chain K, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|L Chain L, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|M Chain M, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|N Chain N, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|O Chain O, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|P Chain P, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Q Chain Q, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|R Chain R, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|S Chain S, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|T Chain T, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|U Chain U, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|V Chain V, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|W Chain W, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|X Chain X, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Y Chain Y, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|Z Chain Z, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|AA Chain a, The Structure Of A V6a Variant Of Clpp.
pdb|1YG8|BB Chain b, The Structure Of A V6a Variant Of Clpp
Length = 193
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 135/234 (57%), Gaps = 58/234 (24%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L P+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 2 LAPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MI
Sbjct: 62 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGYQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDP 278
TDI+I A EI+ +K ++N L HTG S+E+I + T L P
Sbjct: 133 ---------TDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
L P+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 2 LAPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVE 36
>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|B Chain B, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|C Chain C, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|D Chain D, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|E Chain E, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|F Chain F, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|G Chain G, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|H Chain H, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|I Chain I, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|J Chain J, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|K Chain K, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|L Chain L, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|M Chain M, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|N Chain N, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|O Chain O, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|P Chain P, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Q Chain Q, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|R Chain R, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|S Chain S, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|T Chain T, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|U Chain U, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|V Chain V, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|W Chain W, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|X Chain X, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Y Chain Y, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|Z Chain Z, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|1 Chain 1, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
pdb|3HLN|2 Chain 2, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer
Disulfide Bonds
Length = 193
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MI
Sbjct: 62 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGYQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I EI+ +K ++N L HTG S+E+I + T
Sbjct: 133 ---------TDIEIHCREILKVKGRMNELMALHTGQSLEQIERDT 168
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVE 36
>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|B Chain B, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|C Chain C, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|D Chain D, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|E Chain E, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|F Chain F, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
pdb|3TT7|G Chain G, Structure Of Clpp From Bacillus Subtilis In Complex With
Dfp
Length = 197
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + IDD++++ +V+QLLFL +E +K I +
Sbjct: 3 LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQ++ P ++T C+G A SM + LLAAGEKG R++LPNS +MI
Sbjct: 63 YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 122
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 123 HQPLGGAQ 130
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQT RGERAYDIYSRLL++RII +
Sbjct: 3 LIPTVIEQTNRGERAYDIYSRLLKDRIIML 32
>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|B Chain B, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|C Chain C, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|D Chain D, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|E Chain E, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|F Chain F, Structure Of Clpp From Bacillus Subtilis In Compressed
State
pdb|3TT6|G Chain G, Structure Of Clpp From Bacillus Subtilis In Compressed
State
Length = 196
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + IDD++++ +V+QLLFL +E +K I +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQ++ P ++T C+G A SM + LLAAGEKG R++LPNS +MI
Sbjct: 62 YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 121
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 122 HQPLGGAQ 129
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQT RGERAYDIYSRLL++RII +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIML 31
>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|B Chain B, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|C Chain C, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|D Chain D, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|E Chain E, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|F Chain F, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTG|G Chain G, Structure Of Clpp From Bacillus Subtilis In Monoclinic
Crystal Form
pdb|3KTH|A Chain A, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|B Chain B, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|C Chain C, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|D Chain D, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|E Chain E, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|F Chain F, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
pdb|3KTH|G Chain G, Structure Of Clpp From Bacillus Subtilis In Orthorombic
Crystal Form
Length = 199
Score = 181 bits (459), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + IDD++++ +V+QLLFL +E +K I +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQ++ P ++T C+G A SM + LLAAGEKG R++LPNS +MI
Sbjct: 62 YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 121
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 122 HQPLGGAQ 129
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQT RGERAYDIYSRLL++RII +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIML 31
>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1
pdb|3KTI|B Chain B, Structure Of Clpp In Complex With Adep1
pdb|3KTI|C Chain C, Structure Of Clpp In Complex With Adep1
pdb|3KTI|D Chain D, Structure Of Clpp In Complex With Adep1
pdb|3KTI|E Chain E, Structure Of Clpp In Complex With Adep1
pdb|3KTI|F Chain F, Structure Of Clpp In Complex With Adep1
pdb|3KTI|G Chain G, Structure Of Clpp In Complex With Adep1
pdb|3KTJ|A Chain A, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|B Chain B, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|C Chain C, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|D Chain D, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|E Chain E, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|F Chain F, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTJ|G Chain G, Structure Of Clpp In Complex With Adep2 In Monoclinic
Crystal Form
pdb|3KTK|A Chain A, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|B Chain B, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|C Chain C, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|D Chain D, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|E Chain E, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|F Chain F, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|G Chain G, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|H Chain H, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|I Chain I, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|J Chain J, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|K Chain K, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|L Chain L, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|M Chain M, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
pdb|3KTK|N Chain N, Structure Of Clpp In Complex With Adep2 In Triclinic
Crystal Form
Length = 199
Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 104/128 (81%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIEQT RGERAYDIYSRLL++RII + IDD++++ +V+QLLFL +E +K I +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGS+T+G+ IYDTMQ++ P ++T C+G A SM + LLAAGEKG R++LPNS +MI
Sbjct: 62 YINSPGGSITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMI 121
Query: 165 HQPSGGVQ 172
HQP GG Q
Sbjct: 122 HQPLGGAQ 129
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/30 (76%), Positives = 27/30 (90%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIEQT RGERAYDIYSRLL++RII +
Sbjct: 2 LIPTVIEQTNRGERAYDIYSRLLKDRIIML 31
>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|B Chain B, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|C Chain C, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|D Chain D, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|E Chain E, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|F Chain F, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3ST9|G Chain G, Crystal Structure Of Clpp In Heptameric Form From
Staphylococcus Aureus
pdb|3STA|V Chain V, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|A Chain A, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|B Chain B, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|C Chain C, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|E Chain E, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|F Chain F, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|G Chain G, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|I Chain I, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|K Chain K, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|L Chain L, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|M Chain M, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|N Chain N, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|S Chain S, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
pdb|3STA|T Chain T, Crystal Structure Of Clpp In Tetradecameric Form From
Staphylococcus Aureus
Length = 197
Score = 178 bits (452), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 130/228 (57%), Gaps = 58/228 (25%)
Query: 42 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKP 101
S L+P VIE T RGERAYDIYSRLL++RII + IDD++++ +V+QLLFLQ++ S+K
Sbjct: 2 SMNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKD 61
Query: 102 IHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161
I++YINSPGGSVT+G IYDT+Q++ P + T C+G A SM S LLAAG KG R +LPN+
Sbjct: 62 IYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAE 121
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+MIHQP GG Q GQA
Sbjct: 122 VMIHQPLGGAQ---------------------GQA------------------------- 135
Query: 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A I+ ++++N + + TG SIEKI K T
Sbjct: 136 ------------TEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT 171
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 378 SRPLVPIVIEQTGRGERAYDIYSRLLRERIICV 410
S L+P VIE T RGERAYDIYSRLL++RII +
Sbjct: 2 SMNLIPTVIETTNRGERAYDIYSRLLKDRIIML 34
>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3QWD|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus
pdb|3V5E|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|B Chain B, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|C Chain C, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|D Chain D, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|E Chain E, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|F Chain F, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|G Chain G, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|H Chain H, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|I Chain I, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|J Chain J, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|K Chain K, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|L Chain L, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|M Chain M, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
pdb|3V5E|N Chain N, Crystal Structure Of Clpp From Staphylococcus Aureus In
The Active, Extended Conformation
Length = 203
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/225 (42%), Positives = 129/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE T RGERAYDIYSRLL++RII + IDD++++ +V+QLLFLQ++ S+K I++
Sbjct: 3 LIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G IYDT+Q++ P + T C+G A SM S LLAAG KG R +LPN+ +MI
Sbjct: 63 YINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A I+ ++++N + + TG SIEKI K T
Sbjct: 134 ---------TEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIE T RGERAYDIYSRLL++RII +
Sbjct: 3 LIPTVIETTNRGERAYDIYSRLLKDRIIML 32
>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|B Chain B, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|C Chain C, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|D Chain D, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|E Chain E, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|F Chain F, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|G Chain G, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|H Chain H, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|I Chain I, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|J Chain J, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|K Chain K, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|L Chain L, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|M Chain M, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|N Chain N, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|O Chain O, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|P Chain P, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Q Chain Q, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|R Chain R, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|S Chain S, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|T Chain T, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|U Chain U, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|V Chain V, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|W Chain W, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|X Chain X, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Y Chain Y, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|Z Chain Z, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|AA Chain a, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
pdb|3V5I|BB Chain b, The Crystal Structure Of The Mutant Clpp S98a
(Staphylococcus Aureus)
Length = 203
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/225 (42%), Positives = 129/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
L+P VIE T RGERAYDIYSRLL++RII + IDD++++ +V+QLLFLQ++ S+K I++
Sbjct: 3 LIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYL 62
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGGSVT+G IYDT+Q++ P + T C+G A +M S LLAAG KG R +LPN+ +MI
Sbjct: 63 YINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMI 122
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 123 HQPLGGAQ---------------------GQA---------------------------- 133
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A I+ ++++N + + TG SIEKI K T
Sbjct: 134 ---------TEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICV 410
L+P VIE T RGERAYDIYSRLL++RII +
Sbjct: 3 LIPTVIETTNRGERAYDIYSRLLKDRIIML 32
>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|B Chain B, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|C Chain C, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|D Chain D, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|E Chain E, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|F Chain F, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|G Chain G, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|H Chain H, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|I Chain I, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|J Chain J, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|K Chain K, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|L Chain L, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|M Chain M, Crystal Structure Of H.Pylori Clpp
pdb|2ZL0|N Chain N, Crystal Structure Of H.Pylori Clpp
pdb|2ZL2|A Chain A, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|B Chain B, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|C Chain C, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|D Chain D, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|E Chain E, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|F Chain F, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|G Chain G, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|H Chain H, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|I Chain I, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|J Chain J, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|K Chain K, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|L Chain L, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|M Chain M, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
pdb|2ZL2|N Chain N, Crystal Structure Of H.Pylori Clpp In Complex With The
Peptide Nvlgftq
Length = 196
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 129/224 (57%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE T RGER+YDIYSRLL++RI+ + G I+DS++S +VAQLLFL++E +K I +Y
Sbjct: 5 IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSGL IYDTM ++ P ++T C+GQA SM + LL+ G KG R SLP+SRIMIH
Sbjct: 65 INSPGGVITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I + EI+ LK +N + +++G S+E+I K T
Sbjct: 135 --------SDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDT 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE T RGER+YDIYSRLL++RI+ + G ++
Sbjct: 5 IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEIN 38
>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|B Chain B, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|C Chain C, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|D Chain D, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|E Chain E, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|F Chain F, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|G Chain G, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|H Chain H, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|I Chain I, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|J Chain J, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|K Chain K, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|L Chain L, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|M Chain M, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL3|N Chain N, Crystal Structure Of H.Pylori Clpp S99a
pdb|2ZL4|A Chain A, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|B Chain B, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|C Chain C, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|D Chain D, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|E Chain E, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|F Chain F, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|G Chain G, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|H Chain H, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|I Chain I, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|J Chain J, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|K Chain K, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|L Chain L, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|M Chain M, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
pdb|2ZL4|N Chain N, Crystal Structure Of H.Pylori Clpp S99a In Complex With
The Peptide Aaaa
Length = 196
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 129/224 (57%), Gaps = 58/224 (25%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P VIE T RGER+YDIYSRLL++RI+ + G I+DS++S +VAQLLFL++E +K I +Y
Sbjct: 5 IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLY 64
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
INSPGG +TSGL IYDTM ++ P ++T C+GQA +M + LL+ G KG R SLP+SRIMIH
Sbjct: 65 INSPGGVITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIH 124
Query: 166 QPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225
QP GG Q GQA
Sbjct: 125 QPLGGAQ---------------------GQA----------------------------- 134
Query: 226 SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I + EI+ LK +N + +++G S+E+I K T
Sbjct: 135 --------SDIEIISNEILRLKGLMNSILAQNSGQSLEQIAKDT 170
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
+P VIE T RGER+YDIYSRLL++RI+ + G ++
Sbjct: 5 IPYVIENTDRGERSYDIYSRLLKDRIVLLSGEIN 38
>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|B Chain B, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|C Chain C, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|D Chain D, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|E Chain E, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|F Chain F, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
pdb|3P2L|G Chain G, Crystal Structure Of Atp-Dependent Clp Protease Subunit P
From Francisella Tularensis
Length = 201
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 125/225 (55%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIE+T GERA+DIYSRLL+ERI+ + G ++D +++V+AQLLFL+SE K I+
Sbjct: 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G G+YDT Q++ P ++T C+G A S SLLLA G KG R+SLP+S+I I
Sbjct: 66 YINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 126 HQPLGGFR---------------------GQA---------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ I+ +K ++N + HTG +E I K T
Sbjct: 137 ---------SDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDT 172
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 29/35 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP VIE+T GERA+DIYSRLL+ERI+ + G V+
Sbjct: 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVN 40
>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|B Chain B, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|C Chain C, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|D Chain D, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|E Chain E, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|F Chain F, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|G Chain G, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|H Chain H, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|I Chain I, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|J Chain J, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|K Chain K, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|L Chain L, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|M Chain M, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
pdb|3Q7H|N Chain N, Structure Of The Clpp Subunit Of The Atp-Dependent Clp
Protease From Coxiella Burnetii
Length = 195
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 122/231 (52%), Gaps = 58/231 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP V+EQT RGERAYDIYSRLL++R+I ++G ++D +++ +AQ LFL+SE+ K I++
Sbjct: 4 LVPXVVEQTSRGERAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINL 63
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG+VTS IYDT Q+V P + T C+GQA S +LLLA G KG RH LP+S + I
Sbjct: 64 YINSPGGAVTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXI 123
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQ GG Q GQ I IH
Sbjct: 124 HQVLGGYQ---------------------GQGTD---------------------IQIH- 140
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVL 275
A++ + Q+N + KHTG IE++ K T Y L
Sbjct: 141 ---------------AKQTQRVSDQLNQILAKHTGKDIERVEKDTNRDYFL 176
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVS 415
LVP V+EQT RGERAYDIYSRLL++R+I ++G V
Sbjct: 4 LVPXVVEQTSRGERAYDIYSRLLKDRVIFLVGQVE 38
>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|B Chain B, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|C Chain C, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|D Chain D, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|E Chain E, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|F Chain F, The Structure Of Streptococcus Pneumoniae A153p Clpp
pdb|1Y7O|G Chain G, The Structure Of Streptococcus Pneumoniae A153p Clpp
Length = 218
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 91/123 (73%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
++P+VIEQT RGER+YDIYSRLL++RII + GP++D+ ++ V+AQLLFL ++ S K I++
Sbjct: 21 MIPVVIEQTSRGERSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYL 80
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
Y+N+PGGSV++GL I DT ++ + T G A S +++ ++G KG R LPN+ I
Sbjct: 81 YVNTPGGSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXI 140
Query: 165 HQP 167
HQP
Sbjct: 141 HQP 143
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221
+ ++ P G V GL I DT ++ + T G A S +++ ++G KG R LPN+
Sbjct: 80 LYVNTPGGSVSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYX 139
Query: 222 IHQP--SGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
IHQP G Q TD+ I E ++ + + + +++G S EK+
Sbjct: 140 IHQPXGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSXEKV 185
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
++P+VIEQT RGER+YDIYSRLL++RII + GPV
Sbjct: 21 MIPVVIEQTSRGERSYDIYSRLLKDRIIXLTGPV 54
>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CBY|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 208
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 62 IYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121
+Y RLL ERII + ++D +++ + AQ+L L +E + K I +YINSPGGS+++G+ IYD
Sbjct: 20 VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 79
Query: 122 TMQYVLPP--IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
TM VL P IAT+ +G A SM LLAAG KG R++LP++RI++HQP GGV
Sbjct: 80 TM--VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV 129
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPP--IATWCVGQACSM 199
A +LL A E + + + I+ P G + G+ IYDTM VL P IAT+ +G A SM
Sbjct: 46 AQILLLAAEDASK----DISLYINSPGGSISAGMAIYDTM--VLAPCDIATYAMGMAASM 99
Query: 200 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
LLAAG KG R++LP++RI++HQP GGV G A DI IQAE+ +KK++ L + TG
Sbjct: 100 GEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTG 159
Query: 260 LSIEKI 265
IE+I
Sbjct: 160 QPIERI 165
>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|E Chain E, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|F Chain F, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|G Chain G, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|H Chain H, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|I Chain I, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|J Chain J, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|K Chain K, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|L Chain L, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|M Chain M, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
pdb|2CE3|N Chain N, Crystal Structure Of The Atp-Dependent Clp Protease
Proteolytic Subunit 1 (Clpp1) From Mycobacterium
Tuberculosis
Length = 200
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 62 IYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121
+Y RLL ERII + ++D +++ + AQ+L L +E + K I +YINSPGGS+++G+ IYD
Sbjct: 20 VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 79
Query: 122 TMQYVLPP--IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
TM VL P IAT+ +G A SM LLAAG KG R++LP++RI++HQP GGV
Sbjct: 80 TM--VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV 129
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPP--IATWCVGQACSM 199
A +LL A E + + + I+ P G + G+ IYDTM VL P IAT+ +G A SM
Sbjct: 46 AQILLLAAEDASK----DISLYINSPGGSISAGMAIYDTM--VLAPCDIATYAMGMAASM 99
Query: 200 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
LLAAG KG R++LP++RI++HQP GGV G A DI IQAE+ +KK++ L + TG
Sbjct: 100 GEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTG 159
Query: 260 LSIEKI 265
IE+I
Sbjct: 160 QPIERI 165
>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|B Chain B, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|C Chain C, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|D Chain D, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|E Chain E, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|F Chain F, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|G Chain G, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|H Chain H, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|I Chain I, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|J Chain J, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|K Chain K, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|L Chain L, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|M Chain M, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
pdb|2C8T|N Chain N, The 3.0 A Resolution Structure Of Caseinolytic Clp
Protease 1 From Mycobacterium Tuberculosis
Length = 206
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 82/112 (73%), Gaps = 4/112 (3%)
Query: 62 IYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121
+Y RLL ERII + ++D +++ + AQ+L L +E + K I +YINSPGGS+++G+ IYD
Sbjct: 21 VYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYD 80
Query: 122 TMQYVLPP--IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
TM VL P IAT+ +G A SM LLAAG KG R++LP++RI++HQP GGV
Sbjct: 81 TM--VLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV 130
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 8/126 (6%)
Query: 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPP--IATWCVGQACSM 199
A +LL A E + + + I+ P G + G+ IYDTM VL P IAT+ +G A SM
Sbjct: 47 AQILLLAAEDASK----DISLYINSPGGSISAGMAIYDTM--VLAPCDIATYAMGMAASM 100
Query: 200 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTG 259
LLAAG KG R++LP++RI++HQP GGV G A DI IQAE+ +KK++ L + TG
Sbjct: 101 GEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTG 160
Query: 260 LSIEKI 265
IE+I
Sbjct: 161 QPIERI 166
>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|B Chain B, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|C Chain C, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|D Chain D, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|E Chain E, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|F Chain F, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
pdb|2F6I|G Chain G, Crystal Structure Of The Clpp Protease Catalytic Domain
From Plasmodium Falciparum
Length = 215
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 1/111 (0%)
Query: 61 DIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120
D+ ++RII + I+ + +++QLL+L + + I +YINSPGGS+ GL I
Sbjct: 31 DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDN-INHNDIKIYINSPGGSINEGLAIL 89
Query: 121 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171
D Y+ I T G SMAS++LA+G+KG R SLPN RIMIHQP G
Sbjct: 90 DIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNA 140
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 73/139 (52%), Gaps = 9/139 (6%)
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
+I I+ P G + GL I D Y+ I T G SMAS++LA+G+KG R SLPN RI
Sbjct: 72 KIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRI 131
Query: 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYI 280
MIHQP G G DI+IQ +EI+ LKK + T ++E I K + Y
Sbjct: 132 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY------- 184
Query: 281 CFWINGLYVKHTGLSIEKI 299
++N L K G+ E I
Sbjct: 185 --YMNALEAKQYGIIDEVI 201
>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme
pdb|4HNK|B Chain B, Crystal Structure Of An Enzyme
pdb|4HNK|C Chain C, Crystal Structure Of An Enzyme
pdb|4HNK|D Chain D, Crystal Structure Of An Enzyme
pdb|4HNK|E Chain E, Crystal Structure Of An Enzyme
pdb|4HNK|F Chain F, Crystal Structure Of An Enzyme
pdb|4HNK|G Chain G, Crystal Structure Of An Enzyme
pdb|4HNK|H Chain H, Crystal Structure Of An Enzyme
pdb|4HNK|I Chain I, Crystal Structure Of An Enzyme
pdb|4HNK|J Chain J, Crystal Structure Of An Enzyme
pdb|4HNK|K Chain K, Crystal Structure Of An Enzyme
pdb|4HNK|L Chain L, Crystal Structure Of An Enzyme
pdb|4HNK|M Chain M, Crystal Structure Of An Enzyme
pdb|4HNK|N Chain N, Crystal Structure Of An Enzyme
Length = 219
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 86/240 (35%)
Query: 29 GHLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVA 88
GH++ HH ++ P S LL +RII + PI +S +++
Sbjct: 21 GHMSYNEHHKYNINIP-------------------SLLLSKRIIFLSSPIYPHISEQIIS 61
Query: 89 QLLFLQSESSKKPIHMYINSPG----------GSVTSGLGIYDTMQYVLPPIATWCVGQA 138
QLL+L+ ES +KPIH+YINS G +T + I D + Y+ + T+C+G+A
Sbjct: 62 QLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYISSDVYTYCLGKA 121
Query: 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198
+A +L ++G+KG R SL NS ++C+ Q+ S
Sbjct: 122 YGIACILASSGKKGYRFSLKNS-----------------------------SFCLNQSYS 152
Query: 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
+ QAT+I+IQ +EI+N KK++ + K+T
Sbjct: 153 IIPF----------------------------NQATNIEIQNKEIMNTKKKVIEIISKNT 184
>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|B Chain B, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|C Chain C, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|D Chain D, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|E Chain E, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|F Chain F, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
pdb|4GM2|G Chain G, The Crystal Structure Of A Peptidase From Plasmodium
Falciparum
Length = 205
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 67/215 (31%)
Query: 54 GRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPG--- 110
GR + S LL +RII + PI +S +++QLL+L+ ES +KPIH+YINS G
Sbjct: 13 GRENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDID 72
Query: 111 -------GSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+T + I D + Y+ + T+C+G+A +A +L ++G+KG R SL NS
Sbjct: 73 NNKIINLNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNS--- 129
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
++C+ Q+ S+
Sbjct: 130 --------------------------SFCLNQSYSIIPF--------------------- 142
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHT 258
QAT+I+IQ +EI+N KK++ + K+T
Sbjct: 143 -------NQATNIEIQNKEIMNTKKKVIEIISKNT 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,661,978
Number of Sequences: 62578
Number of extensions: 534622
Number of successful extensions: 1321
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 74
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)