Query psy18232
Match_columns 486
No_of_seqs 319 out of 2196
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:05:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/18232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 8.9E-53 1.9E-57 401.2 18.7 191 44-301 2-192 (200)
2 KOG0840|consensus 100.0 1E-52 2.3E-57 409.4 18.5 193 42-301 63-257 (275)
3 PRK14513 ATP-dependent Clp pro 100.0 7.3E-49 1.6E-53 376.4 18.9 192 43-301 1-192 (201)
4 PRK14514 ATP-dependent Clp pro 100.0 8E-49 1.7E-53 380.7 18.7 191 44-301 29-219 (221)
5 PRK12552 ATP-dependent Clp pro 100.0 2.8E-47 6.1E-52 369.8 19.6 203 40-301 2-214 (222)
6 PRK12551 ATP-dependent Clp pro 100.0 4.8E-47 1E-51 362.7 18.2 189 46-301 2-190 (196)
7 CHL00028 clpP ATP-dependent Cl 100.0 8.9E-47 1.9E-51 361.8 18.7 189 46-301 5-196 (200)
8 TIGR00493 clpP ATP-dependent C 100.0 3.3E-43 7E-48 334.6 17.7 188 46-300 3-190 (191)
9 PRK00277 clpP ATP-dependent Cl 100.0 2.2E-42 4.9E-47 330.9 19.1 196 39-301 1-196 (200)
10 PRK14512 ATP-dependent Clp pro 100.0 3.7E-41 7.9E-46 322.3 17.1 182 60-308 14-195 (197)
11 PRK12553 ATP-dependent Clp pro 100.0 1.2E-39 2.5E-44 313.8 18.2 195 44-305 10-206 (207)
12 PF00574 CLP_protease: Clp pro 100.0 2.5E-39 5.4E-44 302.8 12.2 180 55-301 2-181 (182)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 3.2E-37 7E-42 287.8 16.0 171 61-298 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 2.4E-36 5.1E-41 280.3 17.1 161 70-297 1-161 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 99.9 4.2E-26 9E-31 209.5 16.5 156 71-298 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.9 1.5E-24 3.3E-29 204.0 14.3 156 71-302 3-166 (172)
17 cd00394 Clp_protease_like Case 99.9 2.6E-23 5.7E-28 190.2 15.0 158 71-297 1-160 (161)
18 cd07020 Clp_protease_NfeD_1 No 99.9 5.3E-21 1.1E-25 180.9 14.6 160 71-301 3-165 (187)
19 cd07021 Clp_protease_NfeD_like 99.8 1.5E-18 3.3E-23 164.1 12.8 156 71-301 3-171 (178)
20 COG0616 SppA Periplasmic serin 99.7 1.8E-17 3.9E-22 169.3 16.0 203 71-323 63-274 (317)
21 PRK10949 protease 4; Provision 99.7 2.8E-17 6.1E-22 180.9 14.4 206 71-329 330-547 (618)
22 TIGR00705 SppA_67K signal pept 99.7 1.1E-16 2.4E-21 175.4 14.7 203 71-324 312-524 (584)
23 TIGR00706 SppA_dom signal pept 99.6 1.4E-14 2.9E-19 139.4 17.0 199 71-320 4-204 (207)
24 cd07023 S49_Sppa_N_C Signal pe 99.6 2.6E-14 5.7E-19 137.0 16.1 190 71-300 4-199 (208)
25 cd07022 S49_Sppa_36K_type Sign 99.5 1.1E-13 2.4E-18 133.6 14.9 179 81-300 25-205 (214)
26 COG0740 ClpP Protease subunit 99.5 2.6E-14 5.6E-19 137.5 8.7 128 157-318 57-184 (200)
27 cd07019 S49_SppA_1 Signal pept 99.5 5.1E-13 1.1E-17 128.8 15.2 189 71-300 4-202 (211)
28 cd07014 S49_SppA Signal peptid 99.5 4.6E-13 1E-17 125.3 14.1 143 82-300 23-168 (177)
29 PRK11778 putative inner membra 99.4 2.3E-12 4.9E-17 132.7 15.4 188 71-300 94-285 (330)
30 PRK14513 ATP-dependent Clp pro 99.4 5.2E-13 1.1E-17 128.9 7.4 127 157-317 57-183 (201)
31 cd07018 S49_SppA_67K_type Sign 99.4 5.8E-12 1.3E-16 122.4 14.0 186 76-300 24-212 (222)
32 PRK12552 ATP-dependent Clp pro 99.3 2.3E-12 5E-17 126.1 8.7 129 157-317 70-205 (222)
33 PRK14514 ATP-dependent Clp pro 99.3 1.9E-12 4E-17 126.7 7.5 125 157-317 84-210 (221)
34 PRK12551 ATP-dependent Clp pro 99.3 2.6E-12 5.6E-17 123.6 7.0 127 157-317 55-181 (196)
35 CHL00028 clpP ATP-dependent Cl 99.3 6.1E-12 1.3E-16 121.4 8.2 125 157-317 60-187 (200)
36 KOG0840|consensus 99.3 7.2E-12 1.6E-16 123.8 7.7 126 156-317 121-248 (275)
37 PRK14512 ATP-dependent Clp pro 99.2 7.6E-11 1.6E-15 113.5 8.2 126 158-317 54-179 (197)
38 cd07016 S14_ClpP_1 Caseinolyti 99.1 1.6E-10 3.4E-15 106.4 8.0 124 158-317 31-154 (160)
39 TIGR00493 clpP ATP-dependent C 99.1 2.3E-10 5E-15 109.5 6.8 124 157-317 56-182 (191)
40 cd07013 S14_ClpP Caseinolytic 99.1 3.6E-10 7.9E-15 105.3 7.6 124 157-317 30-156 (162)
41 PRK00277 clpP ATP-dependent Cl 99.0 4.4E-10 9.5E-15 108.3 7.3 125 157-317 61-187 (200)
42 cd07017 S14_ClpP_2 Caseinolyti 99.0 7.6E-10 1.6E-14 103.7 7.1 125 157-317 39-165 (171)
43 PF01972 SDH_sah: Serine dehyd 99.0 6.1E-09 1.3E-13 104.6 13.0 76 74-152 68-143 (285)
44 COG1030 NfeD Membrane-bound se 98.9 1.1E-08 2.3E-13 108.4 13.5 153 70-297 29-184 (436)
45 cd07015 Clp_protease_NfeD Nodu 98.9 3.2E-09 6.9E-14 100.5 7.0 124 158-318 31-157 (172)
46 PF00574 CLP_protease: Clp pro 98.9 6.6E-10 1.4E-14 104.3 2.1 125 158-317 47-172 (182)
47 PRK12553 ATP-dependent Clp pro 98.9 6.6E-09 1.4E-13 100.7 8.3 124 157-317 65-193 (207)
48 TIGR00705 SppA_67K signal pept 98.8 4.5E-08 9.7E-13 108.1 14.2 184 81-301 76-269 (584)
49 PRK10949 protease 4; Provision 98.6 4.4E-07 9.5E-12 100.9 14.4 183 81-301 95-288 (618)
50 cd07021 Clp_protease_NfeD_like 98.6 1.3E-07 2.8E-12 89.9 7.0 119 158-317 31-162 (178)
51 cd00394 Clp_protease_like Case 98.5 2.2E-07 4.7E-12 85.2 6.3 121 159-317 31-155 (161)
52 PF01343 Peptidase_S49: Peptid 98.5 6.4E-07 1.4E-11 82.6 9.1 151 124-324 3-153 (154)
53 cd07020 Clp_protease_NfeD_1 No 98.3 1.7E-06 3.6E-11 82.3 7.3 123 158-317 31-156 (187)
54 COG0616 SppA Periplasmic serin 98.2 3.8E-06 8.2E-11 86.5 7.2 62 158-221 99-162 (317)
55 TIGR00706 SppA_dom signal pept 98.0 3.1E-05 6.8E-10 74.7 9.4 62 160-223 34-97 (207)
56 cd07023 S49_Sppa_N_C Signal pe 97.5 0.00023 5.1E-09 68.4 6.7 59 161-221 39-100 (208)
57 COG3904 Predicted periplasmic 97.3 0.0021 4.5E-08 63.0 10.8 163 73-270 52-214 (245)
58 cd07022 S49_Sppa_36K_type Sign 97.3 0.0013 2.9E-08 63.7 9.5 59 162-222 48-108 (214)
59 cd06558 crotonase-like Crotona 97.0 0.011 2.3E-07 55.4 11.8 112 78-228 23-134 (195)
60 PRK11778 putative inner membra 96.9 0.0024 5.2E-08 66.5 7.6 63 159-223 125-190 (330)
61 PF01972 SDH_sah: Serine dehyd 96.9 0.0008 1.7E-08 68.3 3.7 130 158-296 91-243 (285)
62 cd07019 S49_SppA_1 Signal pept 96.6 0.0013 2.8E-08 63.7 2.8 60 162-223 44-106 (211)
63 cd07018 S49_SppA_67K_type Sign 96.4 0.033 7.2E-07 54.4 11.4 88 109-226 24-116 (222)
64 KOG1680|consensus 96.4 0.01 2.2E-07 60.4 7.5 167 78-323 61-231 (290)
65 PLN03229 acetyl-coenzyme A car 96.3 0.066 1.4E-06 60.9 14.1 101 67-171 212-322 (762)
66 PRK05724 acetyl-CoA carboxylas 96.3 0.016 3.4E-07 60.3 8.5 83 67-151 121-213 (319)
67 PRK05869 enoyl-CoA hydratase; 96.2 0.061 1.3E-06 52.6 12.1 46 178-225 92-137 (222)
68 TIGR00513 accA acetyl-CoA carb 96.2 0.015 3.2E-07 60.5 7.8 81 68-150 122-212 (316)
69 PRK06688 enoyl-CoA hydratase; 96.1 0.057 1.2E-06 53.5 11.3 45 179-225 90-134 (259)
70 PLN03230 acetyl-coenzyme A car 96.1 0.014 3E-07 62.6 7.1 95 69-167 193-297 (431)
71 cd07014 S49_SppA Signal peptid 96.0 0.034 7.4E-07 52.2 8.6 111 163-316 46-159 (177)
72 CHL00198 accA acetyl-CoA carbo 96.0 0.098 2.1E-06 54.6 12.5 100 68-171 125-234 (322)
73 PRK12319 acetyl-CoA carboxylas 95.9 0.03 6.5E-07 56.6 8.2 81 68-150 69-159 (256)
74 TIGR03210 badI 2-ketocyclohexa 95.8 0.042 9E-07 54.7 8.9 45 179-225 88-132 (256)
75 PRK06143 enoyl-CoA hydratase; 95.8 0.09 1.9E-06 52.4 11.1 42 179-222 94-135 (256)
76 PRK03580 carnitinyl-CoA dehydr 95.8 0.11 2.3E-06 51.9 11.7 40 181-222 90-129 (261)
77 PRK08258 enoyl-CoA hydratase; 95.7 0.15 3.2E-06 51.4 12.4 50 178-229 106-155 (277)
78 PLN02888 enoyl-CoA hydratase 95.7 0.13 2.8E-06 51.6 11.8 40 181-222 95-134 (265)
79 PRK07511 enoyl-CoA hydratase; 95.7 0.077 1.7E-06 52.7 10.2 47 178-226 91-137 (260)
80 PRK06190 enoyl-CoA hydratase; 95.7 0.11 2.4E-06 52.0 11.1 41 180-222 89-129 (258)
81 PRK09674 enoyl-CoA hydratase-i 95.6 0.088 1.9E-06 52.3 10.3 44 180-225 87-130 (255)
82 PRK07854 enoyl-CoA hydratase; 95.6 0.2 4.3E-06 49.6 12.5 17 283-299 156-172 (243)
83 PRK11423 methylmalonyl-CoA dec 95.6 0.17 3.7E-06 50.6 12.1 41 180-222 91-131 (261)
84 PRK07509 enoyl-CoA hydratase; 95.6 0.17 3.7E-06 50.2 12.1 45 180-226 97-141 (262)
85 PF00378 ECH: Enoyl-CoA hydrat 95.5 0.035 7.6E-07 54.4 6.9 110 78-228 22-131 (245)
86 PRK08138 enoyl-CoA hydratase; 95.5 0.15 3.3E-06 50.8 11.5 41 180-222 93-133 (261)
87 PRK07110 polyketide biosynthes 95.4 0.17 3.6E-06 50.2 11.4 42 179-222 88-129 (249)
88 TIGR01929 menB naphthoate synt 95.4 0.2 4.3E-06 50.0 11.8 46 180-227 92-137 (259)
89 PRK05864 enoyl-CoA hydratase; 95.4 0.13 2.7E-06 51.9 10.5 41 180-222 104-144 (276)
90 PRK09076 enoyl-CoA hydratase; 95.4 0.21 4.4E-06 49.8 11.9 43 179-223 89-131 (258)
91 PRK05980 enoyl-CoA hydratase; 95.3 0.17 3.7E-06 50.3 11.2 41 180-222 95-135 (260)
92 PRK07327 enoyl-CoA hydratase; 95.2 0.2 4.3E-06 50.3 11.2 40 181-222 102-141 (268)
93 PRK05809 3-hydroxybutyryl-CoA 95.2 0.19 4.1E-06 49.9 10.9 45 179-225 91-135 (260)
94 PRK05995 enoyl-CoA hydratase; 95.1 0.24 5.2E-06 49.3 11.5 45 180-226 94-138 (262)
95 TIGR02280 PaaB1 phenylacetate 95.1 0.2 4.2E-06 49.8 10.9 40 181-222 89-128 (256)
96 PRK05870 enoyl-CoA hydratase; 95.1 0.16 3.4E-06 50.4 10.1 43 181-225 91-133 (249)
97 PLN02664 enoyl-CoA hydratase/d 95.0 0.18 3.8E-06 50.8 10.4 44 179-224 105-148 (275)
98 PRK08150 enoyl-CoA hydratase; 95.0 0.24 5.3E-06 49.3 11.2 41 180-222 87-127 (255)
99 PLN02600 enoyl-CoA hydratase 95.0 0.32 6.9E-06 48.3 11.9 41 180-222 83-123 (251)
100 PRK07658 enoyl-CoA hydratase; 94.9 0.42 9.1E-06 47.4 12.6 41 180-222 89-129 (257)
101 PRK09120 p-hydroxycinnamoyl Co 94.9 0.34 7.4E-06 48.9 12.1 42 179-222 98-139 (275)
102 PRK06495 enoyl-CoA hydratase; 94.9 0.47 1E-05 47.2 12.8 113 78-229 27-139 (257)
103 PRK06144 enoyl-CoA hydratase; 94.8 0.26 5.6E-06 49.3 10.8 41 180-222 97-137 (262)
104 PLN02921 naphthoate synthase 94.8 0.26 5.6E-06 51.3 11.1 50 177-228 153-202 (327)
105 PRK08140 enoyl-CoA hydratase; 94.8 0.22 4.7E-06 49.6 10.1 40 181-222 95-134 (262)
106 PRK05862 enoyl-CoA hydratase; 94.6 0.23 5E-06 49.4 9.8 40 181-222 90-129 (257)
107 PRK09245 enoyl-CoA hydratase; 94.6 0.26 5.7E-06 49.1 10.2 45 180-226 98-142 (266)
108 PRK06072 enoyl-CoA hydratase; 94.6 0.25 5.4E-06 49.0 10.0 43 181-225 85-127 (248)
109 PRK06494 enoyl-CoA hydratase; 94.5 0.32 7E-06 48.4 10.7 44 183-228 92-135 (259)
110 PRK06023 enoyl-CoA hydratase; 94.5 0.19 4E-06 49.9 8.9 51 176-228 88-138 (251)
111 PRK07468 enoyl-CoA hydratase; 94.5 0.26 5.6E-06 49.2 10.0 44 179-224 94-137 (262)
112 PLN02267 enoyl-CoA hydratase/i 94.5 0.38 8.3E-06 47.6 11.1 18 283-300 166-183 (239)
113 PRK07396 dihydroxynaphthoic ac 94.4 0.33 7.2E-06 48.8 10.6 49 177-227 99-147 (273)
114 PRK05981 enoyl-CoA hydratase; 94.4 0.37 8E-06 48.1 10.8 50 177-228 95-144 (266)
115 PRK07260 enoyl-CoA hydratase; 94.3 0.26 5.6E-06 49.0 9.4 43 178-222 91-133 (255)
116 TIGR03189 dienoyl_CoA_hyt cycl 94.3 0.36 7.9E-06 48.0 10.5 41 180-222 84-124 (251)
117 PRK08321 naphthoate synthase; 94.3 0.57 1.2E-05 48.0 12.0 39 182-222 132-171 (302)
118 PRK07827 enoyl-CoA hydratase; 94.3 0.34 7.5E-06 48.2 10.2 42 179-222 95-136 (260)
119 PRK06210 enoyl-CoA hydratase; 94.2 0.31 6.8E-06 48.7 9.8 120 78-228 30-149 (272)
120 PRK08290 enoyl-CoA hydratase; 94.2 0.46 1E-05 48.3 11.2 51 177-229 110-160 (288)
121 PRK06213 enoyl-CoA hydratase; 94.1 0.76 1.6E-05 44.9 12.1 19 283-301 162-180 (229)
122 PRK07659 enoyl-CoA hydratase; 94.0 0.89 1.9E-05 45.3 12.6 44 180-225 93-136 (260)
123 PRK06142 enoyl-CoA hydratase; 94.0 0.5 1.1E-05 47.4 10.8 44 179-224 103-146 (272)
124 PRK06127 enoyl-CoA hydratase; 93.9 0.67 1.4E-05 46.5 11.6 48 179-228 100-147 (269)
125 PRK08260 enoyl-CoA hydratase; 93.9 0.51 1.1E-05 48.1 10.8 45 180-226 108-152 (296)
126 PLN03214 probable enoyl-CoA hy 93.9 0.4 8.6E-06 48.6 9.9 42 180-223 102-143 (278)
127 TIGR03134 malonate_gamma malon 93.8 0.27 5.9E-06 49.3 8.4 66 78-143 45-123 (238)
128 PRK08788 enoyl-CoA hydratase; 93.7 0.39 8.5E-06 49.1 9.7 36 185-222 121-156 (287)
129 PRK07799 enoyl-CoA hydratase; 93.7 0.52 1.1E-05 47.0 10.4 43 182-226 97-139 (263)
130 PRK06563 enoyl-CoA hydratase; 93.7 0.49 1.1E-05 47.0 10.0 47 180-228 87-133 (255)
131 PRK07657 enoyl-CoA hydratase; 93.6 0.82 1.8E-05 45.5 11.5 44 180-225 92-135 (260)
132 TIGR03200 dearomat_oah 6-oxocy 93.6 0.3 6.5E-06 51.8 8.7 45 180-226 119-163 (360)
133 PRK07938 enoyl-CoA hydratase; 93.6 0.79 1.7E-05 45.5 11.3 47 177-225 86-132 (249)
134 COG3904 Predicted periplasmic 93.5 0.14 3.1E-06 50.6 5.7 97 67-168 72-171 (245)
135 PRK08252 enoyl-CoA hydratase; 93.3 0.66 1.4E-05 46.1 10.2 39 183-223 89-127 (254)
136 PRK05674 gamma-carboxygeranoyl 93.1 0.77 1.7E-05 46.0 10.4 42 180-223 96-137 (265)
137 PRK08139 enoyl-CoA hydratase; 93.0 0.42 9.1E-06 47.9 8.5 52 176-229 95-146 (266)
138 COG1024 CaiD Enoyl-CoA hydrata 92.8 0.54 1.2E-05 46.6 8.8 45 180-226 93-137 (257)
139 PRK12478 enoyl-CoA hydratase; 92.8 1.5 3.2E-05 45.0 12.1 47 178-226 105-151 (298)
140 PLN02157 3-hydroxyisobutyryl-C 92.4 0.39 8.4E-06 51.5 7.6 44 181-226 129-172 (401)
141 PF01343 Peptidase_S49: Peptid 92.0 0.53 1.1E-05 43.4 7.0 42 181-224 2-43 (154)
142 PRK08272 enoyl-CoA hydratase; 91.9 1.9 4.2E-05 44.0 11.8 44 177-222 119-162 (302)
143 TIGR02440 FadJ fatty oxidation 91.9 1.1 2.5E-05 51.1 11.0 73 78-150 26-119 (699)
144 PRK08184 benzoyl-CoA-dihydrodi 91.8 0.86 1.9E-05 50.9 9.7 19 283-301 198-216 (550)
145 PRK05617 3-hydroxyisobutyryl-C 91.8 0.5 1.1E-05 49.4 7.4 44 180-225 95-138 (342)
146 PLN02851 3-hydroxyisobutyryl-C 91.0 0.64 1.4E-05 50.1 7.4 122 70-228 53-179 (407)
147 COG0825 AccA Acetyl-CoA carbox 90.9 0.49 1.1E-05 48.9 6.0 70 98-169 149-228 (317)
148 PLN02874 3-hydroxyisobutyryl-C 90.7 0.72 1.6E-05 48.9 7.4 49 178-228 98-146 (379)
149 PRK11730 fadB multifunctional 90.6 1.4 2.9E-05 50.7 10.0 42 180-223 97-138 (715)
150 PLN02988 3-hydroxyisobutyryl-C 90.3 1.4 3.1E-05 46.9 9.3 46 179-226 99-144 (381)
151 PRK07112 polyketide biosynthes 90.0 0.51 1.1E-05 47.0 5.3 51 176-228 87-137 (255)
152 TIGR02437 FadB fatty oxidation 89.7 2.6 5.7E-05 48.4 11.4 44 179-224 96-139 (714)
153 PRK11154 fadJ multifunctional 89.5 3.4 7.3E-05 47.4 12.0 19 283-301 173-191 (708)
154 PRK08259 enoyl-CoA hydratase; 89.4 2.1 4.5E-05 42.7 9.1 39 183-223 91-129 (254)
155 COG1030 NfeD Membrane-bound se 89.4 0.58 1.3E-05 50.7 5.4 69 159-239 59-130 (436)
156 TIGR01117 mmdA methylmalonyl-C 88.3 3.3 7.3E-05 45.8 10.5 71 76-149 329-409 (512)
157 TIGR03222 benzo_boxC benzoyl-C 87.4 2.7 5.8E-05 47.0 9.2 19 283-301 194-212 (546)
158 TIGR03222 benzo_boxC benzoyl-C 86.4 7.9 0.00017 43.4 12.2 32 119-150 357-390 (546)
159 TIGR02441 fa_ox_alpha_mit fatt 84.9 3.8 8.3E-05 47.3 9.1 72 78-150 38-131 (737)
160 TIGR03133 malonate_beta malona 84.8 3.8 8.3E-05 42.0 8.1 93 73-167 70-176 (274)
161 PRK08184 benzoyl-CoA-dihydrodi 82.5 9.3 0.0002 42.8 10.6 31 120-150 362-394 (550)
162 PF06833 MdcE: Malonate decarb 82.1 18 0.00039 36.5 11.4 90 178-301 98-187 (234)
163 PF01039 Carboxyl_trans: Carbo 80.6 5.4 0.00012 43.8 7.9 72 76-150 308-389 (493)
164 PLN02820 3-methylcrotonyl-CoA 80.4 6.6 0.00014 44.2 8.5 72 76-150 380-461 (569)
165 PRK07189 malonate decarboxylas 79.8 6.8 0.00015 40.8 7.8 93 73-167 79-185 (301)
166 CHL00198 accA acetyl-CoA carbo 77.6 2.4 5.2E-05 44.4 3.8 45 181-227 188-232 (322)
167 PLN03229 acetyl-coenzyme A car 66.9 5.9 0.00013 45.7 3.9 44 182-227 277-320 (762)
168 COG0793 Prc Periplasmic protea 60.8 32 0.0007 37.1 8.0 94 81-208 216-310 (406)
169 COG4799 Acetyl-CoA carboxylase 59.9 29 0.00063 38.8 7.6 73 75-150 337-419 (526)
170 PF08496 Peptidase_S49_N: Pept 59.4 15 0.00032 34.8 4.5 41 72-114 103-146 (155)
171 cd06567 Peptidase_S41 C-termin 59.1 1E+02 0.0022 29.5 10.5 96 80-209 72-168 (224)
172 PRK05654 acetyl-CoA carboxylas 56.2 54 0.0012 34.0 8.4 74 75-150 134-218 (292)
173 TIGR00515 accD acetyl-CoA carb 52.5 56 0.0012 33.8 7.8 74 75-150 133-217 (285)
174 PLN02820 3-methylcrotonyl-CoA 52.5 61 0.0013 36.7 8.7 91 74-167 141-244 (569)
175 cd07560 Peptidase_S41_CPP C-te 50.6 1.9E+02 0.0041 28.2 10.8 113 61-209 41-155 (211)
176 PRK07112 polyketide biosynthes 47.6 65 0.0014 32.0 7.3 43 118-162 87-129 (255)
177 PRK11186 carboxy-terminal prot 45.6 84 0.0018 36.3 8.5 93 81-207 366-459 (667)
178 cd07561 Peptidase_S41_CPP_like 44.2 1.8E+02 0.004 29.2 9.9 46 79-125 75-121 (256)
179 smart00245 TSPc tail specific 40.7 2.4E+02 0.0052 26.8 9.7 98 78-209 38-136 (192)
180 PLN00049 carboxyl-terminal pro 39.6 1.5E+02 0.0032 31.6 8.9 55 70-125 195-251 (389)
181 PF00378 ECH: Enoyl-CoA hydrat 35.4 31 0.00067 33.7 2.8 48 115-164 78-125 (245)
182 KOG1679|consensus 35.4 24 0.00052 35.6 2.0 19 283-301 194-212 (291)
183 cd07563 Peptidase_S41_IRBP Int 34.8 2.7E+02 0.0059 27.4 9.3 84 100-208 96-180 (250)
184 TIGR00225 prc C-terminal pepti 34.8 2E+02 0.0043 29.8 8.7 96 79-209 162-258 (334)
185 CHL00174 accD acetyl-CoA carbo 33.9 1.8E+02 0.0039 30.5 8.1 75 75-151 146-232 (296)
186 TIGR01117 mmdA methylmalonyl-C 32.9 2E+02 0.0044 32.1 8.9 91 73-167 93-193 (512)
187 PRK08258 enoyl-CoA hydratase; 32.8 46 0.001 33.5 3.6 41 78-120 41-81 (277)
188 PRK06688 enoyl-CoA hydratase; 31.1 48 0.001 32.8 3.4 41 78-120 29-69 (259)
189 PRK07511 enoyl-CoA hydratase; 30.6 54 0.0012 32.6 3.6 42 78-121 27-68 (260)
190 PF02787 CPSase_L_D3: Carbamoy 30.2 1.1E+02 0.0024 27.6 5.3 63 257-324 21-98 (123)
191 PRK09674 enoyl-CoA hydratase-i 30.0 52 0.0011 32.7 3.4 40 78-119 26-65 (255)
192 PRK06072 enoyl-CoA hydratase; 29.9 51 0.0011 32.6 3.3 40 78-119 24-63 (248)
193 PRK05869 enoyl-CoA hydratase; 29.8 53 0.0011 32.1 3.3 41 78-120 31-71 (222)
194 PRK08139 enoyl-CoA hydratase; 29.3 76 0.0017 31.8 4.5 44 119-164 96-139 (266)
195 PRK05809 3-hydroxybutyryl-CoA 29.0 59 0.0013 32.3 3.6 40 78-119 28-68 (260)
196 PLN02664 enoyl-CoA hydratase/d 28.9 43 0.00093 33.7 2.6 40 78-119 32-71 (275)
197 PRK06127 enoyl-CoA hydratase; 28.9 51 0.0011 33.0 3.1 40 78-119 35-75 (269)
198 PRK08150 enoyl-CoA hydratase; 28.9 59 0.0013 32.4 3.6 19 283-301 162-180 (255)
199 PRK07468 enoyl-CoA hydratase; 28.8 57 0.0012 32.6 3.4 41 78-120 29-69 (262)
200 PRK07260 enoyl-CoA hydratase; 28.5 52 0.0011 32.6 3.1 42 78-121 26-67 (255)
201 PF03572 Peptidase_S41: Peptid 28.4 1.8E+02 0.0038 26.1 6.3 97 82-209 16-114 (169)
202 PRK06143 enoyl-CoA hydratase; 28.0 63 0.0014 32.2 3.6 40 78-119 31-71 (256)
203 TIGR01929 menB naphthoate synt 27.1 66 0.0014 32.1 3.5 19 283-301 167-185 (259)
204 KOG1701|consensus 26.8 20 0.00044 39.0 -0.1 18 417-438 447-464 (468)
205 PRK05870 enoyl-CoA hydratase; 26.8 67 0.0015 31.8 3.5 41 78-120 27-67 (249)
206 PRK06023 enoyl-CoA hydratase; 26.5 77 0.0017 31.4 3.9 43 118-162 88-130 (251)
207 TIGR02280 PaaB1 phenylacetate 26.3 64 0.0014 32.0 3.3 40 78-120 23-62 (256)
208 COG1024 CaiD Enoyl-CoA hydrata 26.2 58 0.0013 32.3 3.0 19 283-301 168-186 (257)
209 PRK05995 enoyl-CoA hydratase; 25.9 74 0.0016 31.6 3.7 40 78-119 28-67 (262)
210 PRK07509 enoyl-CoA hydratase; 25.8 63 0.0014 32.0 3.1 41 78-120 27-67 (262)
211 PRK09245 enoyl-CoA hydratase; 25.5 72 0.0016 31.8 3.5 38 81-120 31-68 (266)
212 TIGR03210 badI 2-ketocyclohexa 25.3 74 0.0016 31.6 3.5 19 283-301 164-182 (256)
213 PRK08140 enoyl-CoA hydratase; 24.4 79 0.0017 31.4 3.6 39 78-119 28-66 (262)
214 PRK06142 enoyl-CoA hydratase; 24.3 61 0.0013 32.4 2.7 41 78-120 30-70 (272)
215 PRK09076 enoyl-CoA hydratase; 24.0 84 0.0018 31.3 3.6 40 78-119 26-66 (258)
216 KOG0540|consensus 23.5 2.5E+02 0.0054 31.4 7.2 33 76-110 363-395 (536)
217 PRK05980 enoyl-CoA hydratase; 23.3 77 0.0017 31.5 3.2 40 78-119 27-67 (260)
218 PRK07657 enoyl-CoA hydratase; 23.2 79 0.0017 31.4 3.3 40 78-119 28-68 (260)
219 PLN02600 enoyl-CoA hydratase 22.8 86 0.0019 31.1 3.4 40 78-119 19-59 (251)
220 PRK07854 enoyl-CoA hydratase; 22.6 88 0.0019 30.9 3.4 46 176-223 77-122 (243)
221 PRK08260 enoyl-CoA hydratase; 22.5 83 0.0018 32.1 3.3 40 78-119 28-67 (296)
222 PRK05864 enoyl-CoA hydratase; 22.2 90 0.002 31.4 3.5 41 78-120 34-74 (276)
223 PRK07659 enoyl-CoA hydratase; 21.8 80 0.0017 31.4 3.0 40 78-120 30-69 (260)
224 PRK09120 p-hydroxycinnamoyl Co 21.8 91 0.002 31.4 3.4 40 78-119 32-71 (275)
225 KOG1680|consensus 21.6 1.2E+02 0.0026 31.6 4.2 42 117-160 117-158 (290)
226 PRK03580 carnitinyl-CoA dehydr 21.6 1E+02 0.0022 30.8 3.6 41 78-120 26-67 (261)
227 PRK06213 enoyl-CoA hydratase; 21.4 1E+02 0.0022 30.1 3.5 47 176-224 82-129 (229)
228 PRK06563 enoyl-CoA hydratase; 21.4 1.1E+02 0.0024 30.3 3.9 38 122-161 87-124 (255)
229 PRK11423 methylmalonyl-CoA dec 21.2 95 0.0021 31.0 3.4 19 283-301 166-184 (261)
230 PRK07110 polyketide biosynthes 21.2 94 0.002 30.8 3.3 40 78-119 29-68 (249)
231 PRK07827 enoyl-CoA hydratase; 21.2 86 0.0019 31.2 3.1 41 78-120 30-70 (260)
232 PRK08138 enoyl-CoA hydratase; 21.1 1E+02 0.0022 30.8 3.5 40 78-119 32-71 (261)
233 TIGR02886 spore_II_AA anti-sig 21.0 1.5E+02 0.0032 24.9 4.0 34 71-104 11-44 (106)
234 PRK07658 enoyl-CoA hydratase; 20.5 94 0.002 30.7 3.2 40 78-119 25-64 (257)
235 cd06558 crotonase-like Crotona 20.3 82 0.0018 29.2 2.6 19 283-301 163-181 (195)
236 KOG1682|consensus 20.2 82 0.0018 31.7 2.6 55 165-221 100-159 (287)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=8.9e-53 Score=401.23 Aligned_cols=191 Identities=58% Similarity=0.918 Sum_probs=181.1
Q ss_pred CCcceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHH
Q psy18232 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123 (486)
Q Consensus 44 ~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I 123 (486)
.++|+++++++++++.+|+|++|+++|+||++|+|++..++.+++||++|+++++.|+|+||||||||+|++|++|||+|
T Consensus 2 ~~~~~~~e~~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm 81 (200)
T COG0740 2 ALVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTM 81 (200)
T ss_pred CCCccccCcccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHH
Q psy18232 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLL 203 (486)
Q Consensus 124 ~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~I 203 (486)
+++++||+|+|+| +|||||++|
T Consensus 82 ~~ik~~V~ti~~G----------------------------------------------------------~AaSmgs~l 103 (200)
T COG0740 82 QFIKPPVSTICMG----------------------------------------------------------QAASMGSVL 103 (200)
T ss_pred HhcCCCeEEEEec----------------------------------------------------------HHHhHHHHH
Confidence 9999999999998 555566666
Q ss_pred HhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHH
Q psy18232 204 LAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283 (486)
Q Consensus 204 laAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~ 283 (486)
++||++++|+++|||++|||||+|+..|+++|++++|+|+.+++++++++|+++||+++|+++++++||+||+++
T Consensus 104 ~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~----- 178 (200)
T COG0740 104 LMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAE----- 178 (200)
T ss_pred HhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHH-----
Confidence 666667889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcHHHHhh
Q psy18232 284 INGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 284 L~~~eAk~~GLiDEiI~~ 301 (486)
||+++||+|+++..
T Consensus 179 ----eA~~yGLiD~V~~~ 192 (200)
T COG0740 179 ----EAKEYGLIDKVIES 192 (200)
T ss_pred ----HHHHcCCcceeccc
Confidence 89999999988765
No 2
>KOG0840|consensus
Probab=100.00 E-value=1e-52 Score=409.36 Aligned_cols=193 Identities=59% Similarity=0.885 Sum_probs=182.4
Q ss_pred CCCCcc-eeecccCCC-ccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 42 SRPLVP-IVIEQTGRG-ERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 42 ~~~~vP-~v~~~~~~~-e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
....+| ++++..++| ++++||||+||++||||++++|||++++.+++||+||+++|++|||++|||||||++++|++|
T Consensus 63 ~~~~~p~~~~~~~~rG~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAI 142 (275)
T KOG0840|consen 63 APILVPRFPIESPGRGRERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAI 142 (275)
T ss_pred ccccCCcceeeccccCCCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhH
Confidence 344688 778888888 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchh
Q psy18232 120 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSM 199 (486)
Q Consensus 120 yD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~ 199 (486)
||+|+++++||.|||+| +|+||
T Consensus 143 YDtMq~ik~~V~Tic~G----------------------------------------------------------~Aas~ 164 (275)
T KOG0840|consen 143 YDTMQYIKPDVSTICVG----------------------------------------------------------LAASM 164 (275)
T ss_pred HHHHHhhCCCceeeehh----------------------------------------------------------hHHhH
Confidence 99999999999999998 66666
Q ss_pred hHHHHhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhh
Q psy18232 200 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPY 279 (486)
Q Consensus 200 As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e 279 (486)
|+|||+||++|+|+++||+++|||||.++..|++.|+.++++|+.+.++.+.++|+++||+|.|+|.++++||.||+++
T Consensus 165 aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~- 243 (275)
T KOG0840|consen 165 AALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAE- 243 (275)
T ss_pred HHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHH-
Confidence 7777777778899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCcHHHHhh
Q psy18232 280 ICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 280 ~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++..
T Consensus 244 --------EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 244 --------EAKEYGLIDKVIDH 257 (275)
T ss_pred --------HHHHhcchhhhhcC
Confidence 89999999998875
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=7.3e-49 Score=376.39 Aligned_cols=192 Identities=49% Similarity=0.798 Sum_probs=179.7
Q ss_pred CCCcceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHH
Q psy18232 43 RPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDT 122 (486)
Q Consensus 43 ~~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~ 122 (486)
+|.+|.+++.+++++++.|+|++||++||||++++|++++++.+++||++|+++++.++|+||||||||++++|++|||+
T Consensus 1 ~~~~p~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~ 80 (201)
T PRK14513 1 MSVIPYVIEQTGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDT 80 (201)
T ss_pred CCCCCcccccCCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHH
Confidence 35688888888888989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHH
Q psy18232 123 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASL 202 (486)
Q Consensus 123 I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~ 202 (486)
|++++++|+|+|+| +|+|||++
T Consensus 81 m~~~~~~V~Ti~~G----------------------------------------------------------~AaS~As~ 102 (201)
T PRK14513 81 MRYIKAPVSTICVG----------------------------------------------------------IAMSMGSV 102 (201)
T ss_pred HHhcCCCEEEEEEe----------------------------------------------------------eehhhHHH
Confidence 99999998888888 66666667
Q ss_pred HHhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHH
Q psy18232 203 LLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICF 282 (486)
Q Consensus 203 IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e 282 (486)
|++||++++|+|+||+++|||||+++..|++.|++++++++++.++.+.++|+++||++.++|.++++||+||+++
T Consensus 103 il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~---- 178 (201)
T PRK14513 103 LLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPE---- 178 (201)
T ss_pred HHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHH----
Confidence 7777777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++..
T Consensus 179 -----EA~eyGliD~I~~~ 192 (201)
T PRK14513 179 -----EAKAYGLIDSVIEP 192 (201)
T ss_pred -----HHHHcCCCcEEecc
Confidence 89999999998765
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=8e-49 Score=380.75 Aligned_cols=191 Identities=46% Similarity=0.688 Sum_probs=179.2
Q ss_pred CCcceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHH
Q psy18232 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123 (486)
Q Consensus 44 ~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I 123 (486)
..+|.++++++++++++|+|++||++||||++|+|++++++.+++||++|+++++.++|++|||||||++++|++|||+|
T Consensus 29 ~~~p~~~~~~~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m 108 (221)
T PRK14514 29 YLNPYILEERQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTM 108 (221)
T ss_pred cccceeeeeCCCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHH
Q psy18232 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLL 203 (486)
Q Consensus 124 ~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~I 203 (486)
++++++|+|+|.| +|||||++|
T Consensus 109 ~~~~~~V~tv~~G----------------------------------------------------------~AAS~AslI 130 (221)
T PRK14514 109 QFISSDVATICTG----------------------------------------------------------MAASMASVL 130 (221)
T ss_pred HhcCCCEEEEEEE----------------------------------------------------------EehhHHHHH
Confidence 9999999999888 556666666
Q ss_pred HhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHH
Q psy18232 204 LAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283 (486)
Q Consensus 204 laAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~ 283 (486)
+++|++++|+|+||+++|||||+++..|+++|++++++++.++++.+.++|+++||++.++|+++++||+||+++
T Consensus 131 l~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~----- 205 (221)
T PRK14514 131 LVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQ----- 205 (221)
T ss_pred HhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHH-----
Confidence 666667889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhCCcHHHHhh
Q psy18232 284 INGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 284 L~~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++..
T Consensus 206 ----EA~eyGliD~Vi~~ 219 (221)
T PRK14514 206 ----EAKEYGMIDEVLIK 219 (221)
T ss_pred ----HHHHcCCccEEeec
Confidence 89999999988754
No 5
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.8e-47 Score=369.80 Aligned_cols=203 Identities=37% Similarity=0.582 Sum_probs=176.5
Q ss_pred CCCCCCcceeecccCCCccccchHhhhccCcEEEEccccCcc----------hHHHHHHHHHhhhhcCCCCCeEEEEeCC
Q psy18232 40 TLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDS----------LSSVVVAQLLFLQSESSKKPIHMYINSP 109 (486)
Q Consensus 40 ~~~~~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~----------~a~~ii~qLl~L~~ed~~k~I~L~INSP 109 (486)
+.+.+.+|+.-+...+ ..+.|+|++||++||||++++|+++ +++.+++||++|+.+++.++|+||||||
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSp 80 (222)
T PRK12552 2 PIMAVQAPYYGDAVMR-TPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINST 80 (222)
T ss_pred CCCcccccccCCCCCC-CCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 3455666665442222 2358999999999999999999999 9999999999999999999999999999
Q ss_pred CcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeE
Q psy18232 110 GGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIA 189 (486)
Q Consensus 110 GGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kIt 189 (486)
||++++|..| |.+++|+||||+|++++++|+
T Consensus 81 GGsv~~G~~i-------------------------------------------------G~v~~glaIyD~m~~ik~~V~ 111 (222)
T PRK12552 81 GTSWYTGDAI-------------------------------------------------GFETEAFAICDTMRYIKPPVH 111 (222)
T ss_pred CCCccccccc-------------------------------------------------cccccHHHHHHHHHhcCCCeE
Confidence 9997655221 345566677777777777777
Q ss_pred EEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhh
Q psy18232 190 TWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269 (486)
Q Consensus 190 t~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m 269 (486)
|+++|+|+|||++|++||++++|+++||+++|||||+++..|++.|++++++|+.++++.+.++|+++||++.|+|++++
T Consensus 112 Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~ 191 (222)
T PRK12552 112 TICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDT 191 (222)
T ss_pred EEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHh
Confidence 77777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccChhhHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 270 VCFYVLHDPYICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 270 ~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
+||+||+++ ||+++||+|+++..
T Consensus 192 ~rd~wmsA~---------EA~eyGliD~Ii~~ 214 (222)
T PRK12552 192 DRMFYLTPQ---------EAKEYGLIDRVLES 214 (222)
T ss_pred cCCCcCCHH---------HHHHcCCCcEEecc
Confidence 999999999 89999999998865
No 6
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.8e-47 Score=362.67 Aligned_cols=189 Identities=53% Similarity=0.807 Sum_probs=175.4
Q ss_pred cceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhh
Q psy18232 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQY 125 (486)
Q Consensus 46 vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ 125 (486)
+|.+++..+.++++.|+|++||++||||++|+|++++++.++++|++|+++++.++|++|||||||++++|++|||+|++
T Consensus 2 ~p~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~ 81 (196)
T PRK12551 2 IPIVIEESGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQH 81 (196)
T ss_pred CCcccccCCCCccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHh
Confidence 56666767777788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHh
Q psy18232 126 VLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205 (486)
Q Consensus 126 ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~Ila 205 (486)
++++|+|+|.| +|+|||++|++
T Consensus 82 ~~~~V~t~~~G----------------------------------------------------------~AaS~AslIl~ 103 (196)
T PRK12551 82 VKPDVHTVCVG----------------------------------------------------------LAASMGAFLLC 103 (196)
T ss_pred cCCCEEEEEEE----------------------------------------------------------EehhHHHHHHh
Confidence 98888888887 66666667777
Q ss_pred hcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHH
Q psy18232 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWIN 285 (486)
Q Consensus 206 AG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~ 285 (486)
+|++++|+|+||+++|||||+++..|++.|++++++++.++++.+.++|+++||++.++|++++++|+||+++
T Consensus 104 aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~------- 176 (196)
T PRK12551 104 AGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPS------- 176 (196)
T ss_pred CCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHH-------
Confidence 7777889999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcHHHHhh
Q psy18232 286 GLYVKHTGLSIEKIGK 301 (486)
Q Consensus 286 ~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++.+
T Consensus 177 --EA~eyGliD~I~~~ 190 (196)
T PRK12551 177 --EAVEYGLIDLVIDK 190 (196)
T ss_pred --HHHHcCCCcEEecc
Confidence 89999999988765
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=8.9e-47 Score=361.82 Aligned_cols=189 Identities=36% Similarity=0.593 Sum_probs=171.6
Q ss_pred cceeecc--cCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHH
Q psy18232 46 VPIVIEQ--TGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123 (486)
Q Consensus 46 vP~v~~~--~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I 123 (486)
+|.|+.+ ..++.+++|+|++||++||||++++||+++++.+++||++|+.+++.++|++|||||||++++|++|||+|
T Consensus 5 ~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m 84 (200)
T CHL00028 5 VPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTM 84 (200)
T ss_pred CceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHH
Confidence 4444433 33455678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHH
Q psy18232 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLL 203 (486)
Q Consensus 124 ~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~I 203 (486)
++++.+|+|+|.| +|+|||++|
T Consensus 85 ~~~~~~V~Tv~~G----------------------------------------------------------~AaS~aslI 106 (200)
T CHL00028 85 QFVKPDVHTICLG----------------------------------------------------------LAASMASFI 106 (200)
T ss_pred HhcCCCEEEEEEE----------------------------------------------------------ehHHHHHHH
Confidence 9999999988888 556666666
Q ss_pred HhhcccccccccCCceeeecCCCCC-ccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHH
Q psy18232 204 LAAGEKGMRHSLPNSRIMIHQPSGG-VQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICF 282 (486)
Q Consensus 204 laAG~~gkR~m~Pna~iMIHqP~gg-~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e 282 (486)
+++|++++|+|+||+++|||||+++ ..|++.|+.++++++.++++.+.++|+++||++.++|++++++|+||+++
T Consensus 107 l~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~---- 182 (200)
T CHL00028 107 LAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSAT---- 182 (200)
T ss_pred HhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHH----
Confidence 6666677899999999999999998 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++..
T Consensus 183 -----EA~eyGliD~I~~~ 196 (200)
T CHL00028 183 -----EAKAYGIVDLVAVN 196 (200)
T ss_pred -----HHHHcCCCcEEeec
Confidence 89999999988764
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=3.3e-43 Score=334.64 Aligned_cols=188 Identities=56% Similarity=0.911 Sum_probs=173.9
Q ss_pred cceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhh
Q psy18232 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQY 125 (486)
Q Consensus 46 vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ 125 (486)
+|.+++..++++.++|+|++|+++|+||++|+|+++.++.+++||++++.+++.++|++|||||||++++|++|||.|++
T Consensus 3 ~p~~~~~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~ 82 (191)
T TIGR00493 3 IPMVIEQTGRGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQF 82 (191)
T ss_pred CCcccccCCCCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHh
Confidence 67677777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHh
Q psy18232 126 VLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 205 (486)
Q Consensus 126 ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~Ila 205 (486)
++++|+|+|.| +|+|+|++|++
T Consensus 83 ~~~~v~t~~~G----------------------------------------------------------~AaSaaslI~~ 104 (191)
T TIGR00493 83 IKPDVSTICIG----------------------------------------------------------QAASMGAFLLS 104 (191)
T ss_pred cCCCEEEEEEE----------------------------------------------------------eeccHHHHHHh
Confidence 88888888877 56666666666
Q ss_pred hcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHH
Q psy18232 206 AGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWIN 285 (486)
Q Consensus 206 AG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~ 285 (486)
+|++++|+|.||+++|+|||+++..|++.|++++++++.++++.+.++|+++||++.+++++++++++||+++
T Consensus 105 aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~------- 177 (191)
T TIGR00493 105 AGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAE------- 177 (191)
T ss_pred cCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHH-------
Confidence 6667789999999999999998888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhCCcHHHHh
Q psy18232 286 GLYVKHTGLSIEKIG 300 (486)
Q Consensus 286 ~~eAk~~GLiDEiI~ 300 (486)
||+++|++|+++.
T Consensus 178 --EA~~~GliD~ii~ 190 (191)
T TIGR00493 178 --EAKEYGLIDSVLT 190 (191)
T ss_pred --HHHHcCCccEEec
Confidence 8999999998764
No 9
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=2.2e-42 Score=330.90 Aligned_cols=196 Identities=57% Similarity=0.876 Sum_probs=181.2
Q ss_pred CCCCCCCcceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHH
Q psy18232 39 ATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLG 118 (486)
Q Consensus 39 ~~~~~~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~agla 118 (486)
+|.++|++|.++...++++.++|++++|+++|+||++|+|++++++.++++|++++.+++.++|++|||||||++++|++
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~ 80 (200)
T PRK00277 1 MPIMMNLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA 80 (200)
T ss_pred CCCCCCCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH
Confidence 46778899999877778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccch
Q psy18232 119 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACS 198 (486)
Q Consensus 119 IyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS 198 (486)
|||.|++++.+|+|++.| .|+|
T Consensus 81 I~d~i~~~~~~v~t~~~G----------------------------------------------------------~aaS 102 (200)
T PRK00277 81 IYDTMQFIKPDVSTICIG----------------------------------------------------------QAAS 102 (200)
T ss_pred HHHHHHhcCCCEEEEEEe----------------------------------------------------------Eecc
Confidence 999999998888888887 5556
Q ss_pred hhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChh
Q psy18232 199 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDP 278 (486)
Q Consensus 199 ~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~ 278 (486)
+|++|+++|++++|++.||+++|+|+|+++..|++.+++.+++++.++++.+.++|+++||++.+++++++++++||+++
T Consensus 103 ~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~ 182 (200)
T PRK00277 103 MGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAE 182 (200)
T ss_pred HHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHH
Confidence 66666666666788999999999999999989999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 279 YICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 279 e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
||+++|++|+++..
T Consensus 183 ---------EA~e~GliD~Ii~~ 196 (200)
T PRK00277 183 ---------EAKEYGLIDEVLTK 196 (200)
T ss_pred ---------HHHHcCCccEEeec
Confidence 89999999998875
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.7e-41 Score=322.26 Aligned_cols=182 Identities=35% Similarity=0.572 Sum_probs=166.9
Q ss_pred cchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccch
Q psy18232 60 YDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQAC 139 (486)
Q Consensus 60 ~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AA 139 (486)
.|++++|+++|+||++|+|++++++.++++|++|+.+++.++|+|+||||||++++|++|||.|++++.+|+|+|.|
T Consensus 14 ~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G--- 90 (197)
T PRK14512 14 DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVG--- 90 (197)
T ss_pred chHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEe---
Confidence 68999999999999999999999999999999999988899999999999999999999999999998888888887
Q ss_pred hHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCce
Q psy18232 140 SMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219 (486)
Q Consensus 140 S~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~ 219 (486)
+|+|||++|+++|++++|++.||++
T Consensus 91 -------------------------------------------------------~AaSaaslIl~ag~~~~R~~~p~s~ 115 (197)
T PRK14512 91 -------------------------------------------------------LVASAAALIFLAAKKESRFSLPNAR 115 (197)
T ss_pred -------------------------------------------------------eeHhHHHHHHhcCCcCceeECCCCc
Confidence 5555566666666667889999999
Q ss_pred eeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHH
Q psy18232 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKI 299 (486)
Q Consensus 220 iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI 299 (486)
+|+|||+++..|++.+++.++++++++++.+.++|+++||++.+++++++++|+||+++ ||+++|++|+++
T Consensus 116 imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~---------EA~~yGliD~I~ 186 (197)
T PRK14512 116 YLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSS---------SAVKYGLVFEVV 186 (197)
T ss_pred EEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHH---------HHHHcCCccEee
Confidence 99999999889999999999999999999999999999999999999999999999998 899999999998
Q ss_pred hhccccccC
Q psy18232 300 GKSTNLTEE 308 (486)
Q Consensus 300 ~~~~d~e~~ 308 (486)
.+..+..+|
T Consensus 187 ~~~~~l~~~ 195 (197)
T PRK14512 187 ETRLELEEF 195 (197)
T ss_pred cCcHHhHhh
Confidence 875555444
No 11
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.2e-39 Score=313.79 Aligned_cols=195 Identities=46% Similarity=0.713 Sum_probs=174.9
Q ss_pred CCcceeecccCCCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHH
Q psy18232 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTM 123 (486)
Q Consensus 44 ~~vP~v~~~~~~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I 123 (486)
..+|.++.....+....|++++|+++|+||++|+|++++++.++++|++++.+++.++|+||||||||++++|++|||.|
T Consensus 10 ~~~p~~~~~~~~~~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i 89 (207)
T PRK12553 10 YILPSFIERTSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTI 89 (207)
T ss_pred CCCCcccccCCCCCccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 34777665555566678999999999999999999999999999999999999989999999999999999999999999
Q ss_pred hhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHH
Q psy18232 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLL 203 (486)
Q Consensus 124 ~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~I 203 (486)
+.++.+|+|+|.| .|+|+|++|
T Consensus 90 ~~~~~~v~t~~~G----------------------------------------------------------~aaSaa~lI 111 (207)
T PRK12553 90 QFIRPDVQTVCTG----------------------------------------------------------QAASAGAVL 111 (207)
T ss_pred HhcCCCcEEEEEe----------------------------------------------------------ehhhHHHHH
Confidence 9999998888887 555556666
Q ss_pred HhhcccccccccCCceeeecCCC--CCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHH
Q psy18232 204 LAAGEKGMRHSLPNSRIMIHQPS--GGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYIC 281 (486)
Q Consensus 204 laAG~~gkR~m~Pna~iMIHqP~--gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~ 281 (486)
++||++++|+|.||+++|+|||+ ++..|++.+++.+++++.++++.+.++|+++||++.+++++++++++||+++
T Consensus 112 ~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~--- 188 (207)
T PRK12553 112 LAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAE--- 188 (207)
T ss_pred HHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHH---
Confidence 66666678899999999999998 6678999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhCCcHHHHhhcccc
Q psy18232 282 FWINGLYVKHTGLSIEKIGKSTNL 305 (486)
Q Consensus 282 e~L~~~eAk~~GLiDEiI~~~~d~ 305 (486)
||+++|++|+++.+..|.
T Consensus 189 ------EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 189 ------EAKDYGLVDQIITSYRDL 206 (207)
T ss_pred ------HHHHcCCccEEcCchhhc
Confidence 899999999988775543
No 12
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=2.5e-39 Score=302.76 Aligned_cols=180 Identities=45% Similarity=0.703 Sum_probs=163.2
Q ss_pred CCccccchHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEE
Q psy18232 55 RGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWC 134 (486)
Q Consensus 55 ~~e~~~Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv 134 (486)
++++|+|||++|+++|+||+.|+|++++++.++++|++|+.+++.++|+|+||||||++++|++|||.|+.++.+|+|+|
T Consensus 2 ~~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~ 81 (182)
T PF00574_consen 2 RGEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVV 81 (182)
T ss_dssp TEEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccc
Q psy18232 135 VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 214 (486)
Q Consensus 135 ~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m 214 (486)
.| .|+|+|++|+++|++++|+|
T Consensus 82 ~G----------------------------------------------------------~aaSaa~~i~~ag~~~~R~~ 103 (182)
T PF00574_consen 82 LG----------------------------------------------------------LAASAATLIFLAGDKGKRYA 103 (182)
T ss_dssp EE----------------------------------------------------------EEETHHHHHHHTSSTTTEEE
T ss_pred eC----------------------------------------------------------ccccceehhhhcCCcCceee
Confidence 77 66666666777777778999
Q ss_pred cCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCC
Q psy18232 215 LPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGL 294 (486)
Q Consensus 215 ~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GL 294 (486)
.|++++|+|+|..+..|+..++...++++.+.++++.++|+++||++++++++++++++||+++ ||+++|+
T Consensus 104 ~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~---------EA~~~Gi 174 (182)
T PF00574_consen 104 SPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAE---------EALEYGI 174 (182)
T ss_dssp -TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHH---------HHHHHTS
T ss_pred eecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHH---------HHHHcCC
Confidence 9999999999999998999999999999999999999999999999999999999999999998 8999999
Q ss_pred cHHHHhh
Q psy18232 295 SIEKIGK 301 (486)
Q Consensus 295 iDEiI~~ 301 (486)
+|+++.+
T Consensus 175 iD~I~~~ 181 (182)
T PF00574_consen 175 IDEIIES 181 (182)
T ss_dssp SSEEESS
T ss_pred CCEeccC
Confidence 9987653
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=3.2e-37 Score=287.76 Aligned_cols=171 Identities=58% Similarity=0.914 Sum_probs=158.6
Q ss_pred chHhhhccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchh
Q psy18232 61 DIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACS 140 (486)
Q Consensus 61 Di~s~Ll~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS 140 (486)
|++++|+++|+||+.|+|+++.++.++++|++++.+++.++|+|+||||||++++|++|||.|+.++.+|+|++.|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g---- 76 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLG---- 76 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEe----
Confidence 7899999999999999999999999999999999999889999999999999999999999999988888888877
Q ss_pred HHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCcee
Q psy18232 141 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220 (486)
Q Consensus 141 ~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~i 220 (486)
+|+|+|++|+++|++|+|+|.||+++
T Consensus 77 ------------------------------------------------------~aaS~~~~i~~~g~~~~r~~~~~a~~ 102 (171)
T cd07017 77 ------------------------------------------------------LAASMGALLLAAGTKGKRYALPNSRI 102 (171)
T ss_pred ------------------------------------------------------EehhHHHHHHHcCCCCCEEEccchHH
Confidence 55555666666666677899999999
Q ss_pred eecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHH
Q psy18232 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEK 298 (486)
Q Consensus 221 MIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEi 298 (486)
|+|+|+.+..|+..++...++++.++++.+.++|+++||++.+++.++|++++||+++ ||+++|++|++
T Consensus 103 ~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~---------EA~e~GiiD~V 171 (171)
T cd07017 103 MIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE---------EAKEYGLIDKI 171 (171)
T ss_pred HHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH---------HHHHcCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999998 89999999963
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=2.4e-36 Score=280.26 Aligned_cols=161 Identities=37% Similarity=0.553 Sum_probs=149.0
Q ss_pred cEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcC
Q psy18232 70 RIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 149 (486)
Q Consensus 70 RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aG 149 (486)
|+||+.|+|++.+++.++++|++++.+++.++|+|+||||||+++++++|||.|+.++.+|.|++.|.|+|+|+
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~------ 74 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGS------ 74 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHH------
Confidence 89999999999999999999999999999999999999999999999999999999999998888885555555
Q ss_pred CCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCc
Q psy18232 150 EKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 229 (486)
Q Consensus 150 d~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~ 229 (486)
+|+++|++|+|+++|++++|+|||+++.
T Consensus 75 ----------------------------------------------------~i~~a~~~g~r~~~p~a~~~ih~~~~~~ 102 (162)
T cd07013 75 ----------------------------------------------------VIAMAGAKGKRFILPNAMMMIHQPWGGT 102 (162)
T ss_pred ----------------------------------------------------HHHHcCCCCcEEEecCEEEEEccCcccc
Confidence 5555555567899999999999999998
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHH
Q psy18232 230 QGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIE 297 (486)
Q Consensus 230 ~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDE 297 (486)
.|++.|++..++++.+.++.+.++|+++||++++++++++++++||+++ ||+++||+|+
T Consensus 103 ~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~---------eA~~~GliD~ 161 (162)
T cd07013 103 LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAR---------EAVEYGFADT 161 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHH---------HHHHcCCCCc
Confidence 9999999999999999999999999999999999999999999999998 8999999996
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.94 E-value=4.2e-26 Score=209.49 Aligned_cols=156 Identities=30% Similarity=0.396 Sum_probs=142.5
Q ss_pred EEEEccccCc---chHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHH
Q psy18232 71 IICVMGPIDD---SLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLA 147 (486)
Q Consensus 71 IIfl~G~I~d---~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~ 147 (486)
-|+++|+|++ ..++.+.++|..+..+ ++|.|+||||||++++++.|++.|+.++.||.+++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5899999999 6899999999877665 799999999999999999999999999999999998877777777777
Q ss_pred cCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 148 AGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 148 aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
+||. |++.|++++|+|+|.+
T Consensus 79 a~d~------------------------------------------------------------~~~~~~a~~~~~~~~~ 98 (160)
T cd07016 79 AGDE------------------------------------------------------------VEMPPNAMLMIHNPST 98 (160)
T ss_pred cCCe------------------------------------------------------------EEECCCcEEEEECCcc
Confidence 7773 6889999999999999
Q ss_pred CccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHH
Q psy18232 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEK 298 (486)
Q Consensus 228 g~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEi 298 (486)
+..|+..++....++++++++.+.+.|++++|++++++++++.++.||+++ ||+++|++|++
T Consensus 99 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~---------eA~~~GliD~v 160 (160)
T cd07016 99 GAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQ---------EAVELGFADEI 160 (160)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHH---------HHHHcCCCCcC
Confidence 888999999999999999999999999999999999999999999999988 89999999963
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.92 E-value=1.5e-24 Score=204.03 Aligned_cols=156 Identities=14% Similarity=0.127 Sum_probs=135.5
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEe---ccchhHHHHHHH
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCV---GQACSMASLLLA 147 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~---G~AAS~as~Ia~ 147 (486)
+|-+.|.|++.....+.+.|..... ++.++|.|+||||||+++++.+|||.|+.++.||.++|. |.|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 5778999999988888888876654 578999999999999999999999999999999999998 777777777777
Q ss_pred cCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 148 AGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 148 aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
+|++ |+|.|+++++.|+|.+
T Consensus 82 a~~~------------------------------------------------------------i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 82 GSHL------------------------------------------------------------IAMAPGTSIGACRPIL 101 (172)
T ss_pred hcCc------------------------------------------------------------eEECCCCEEEEccccc
Confidence 7774 5899999999999986
Q ss_pred CccCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhc
Q psy18232 228 GVQGQ-----ATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKS 302 (486)
Q Consensus 228 g~~G~-----a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~ 302 (486)
+. |+ ..+.+..+.++.++++ +++++|++.+.++++++++.||+++ ||+++|++|.+..+.
T Consensus 102 ~~-g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~---------EA~~~G~iD~ia~~~ 166 (172)
T cd07015 102 GY-SQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPE---------EALKYGVIEVVARDI 166 (172)
T ss_pred cC-CCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHH---------HHHHcCCceeeeCCH
Confidence 53 55 5677888888888777 7999999999999999999999998 899999999887763
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.90 E-value=2.6e-23 Score=190.17 Aligned_cols=158 Identities=27% Similarity=0.397 Sum_probs=143.8
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCC
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd 150 (486)
||+++|+|++.....+.+.|..++.+++.++|+|++|||||++.++..|++.|+..++||.+++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999888888888888887
Q ss_pred CCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCcc
Q psy18232 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 230 (486)
Q Consensus 151 ~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~ 230 (486)
+ |++.|++++++|+|..+..
T Consensus 81 ~------------------------------------------------------------~~~~~~a~~~~~g~~~~~~ 100 (161)
T cd00394 81 K------------------------------------------------------------IVMAPGTRVGSHGPIGGYG 100 (161)
T ss_pred E------------------------------------------------------------EEECCCCEEEEeeeEEecC
Confidence 4 5888999999999987665
Q ss_pred CCh--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHH
Q psy18232 231 GQA--TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIE 297 (486)
Q Consensus 231 G~a--~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDE 297 (486)
+.. .+.....+.+..+.+.+.+.+++++|++.+++++.+.++.|++++ +|+++||+|+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~---------eA~~~GLvD~ 160 (161)
T cd00394 101 GNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQ---------EALEYGLVDA 160 (161)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHH---------HHHHcCCcCc
Confidence 544 667777889999999999999999999999999999999999988 8999999996
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.86 E-value=5.3e-21 Score=180.94 Aligned_cols=160 Identities=14% Similarity=0.134 Sum_probs=134.1
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEe---ccchhHHHHHHH
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCV---GQACSMASLLLA 147 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~---G~AAS~as~Ia~ 147 (486)
+|.+.|+|+++.++.+.++|..+..+ +.++|.|+||||||+++++..||+.|...++||.+.+. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 57899999999999999999998865 48999999999999999999999999999999999998 888888888888
Q ss_pred cCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 148 AGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 148 aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
+||. |+|.|+++++.|.|..
T Consensus 82 a~D~------------------------------------------------------------iva~p~a~~g~~~~~~ 101 (187)
T cd07020 82 AAHI------------------------------------------------------------AAMAPGTNIGAAHPVA 101 (187)
T ss_pred hCCc------------------------------------------------------------eeECCCCcEEeccccc
Confidence 8885 4788999999999885
Q ss_pred CccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 228 GVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 228 g~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
+..+...+...+.+.+..+.. ....|++++|++.+.+++++....|++++ ||++.|++|+++..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~---------eA~~~Glvd~v~~~ 165 (187)
T cd07020 102 IGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAE---------EALKLGVIDLIAAD 165 (187)
T ss_pred cCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHH---------HHHHcCCcccccCC
Confidence 433333344445555555554 46788999999999999999888888888 89999999988765
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.78 E-value=1.5e-18 Score=164.08 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=125.2
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCC
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd 150 (486)
+|.+.|+|++..+..+.+.|..+..++ .+.|+|+||||||.++++..|++.|...+.||.+++.|.|+|+|++|++++|
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 578899999998888888887766664 8999999999999999999999999999999999998888888888777777
Q ss_pred CCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCcc
Q psy18232 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 230 (486)
Q Consensus 151 ~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~ 230 (486)
. ++|.|++.++.|.|.....
T Consensus 82 ~------------------------------------------------------------i~m~p~a~iG~~~~v~~~~ 101 (178)
T cd07021 82 E------------------------------------------------------------IYMAPGATIGAAEPIPGDG 101 (178)
T ss_pred e------------------------------------------------------------EEECCCCeEecCeeEcCCC
Confidence 5 4888999999999986554
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccc-------------ccChhhHHHHHHHHHHHHhCCcHH
Q psy18232 231 GQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFY-------------VLHDPYICFWINGLYVKHTGLSIE 297 (486)
Q Consensus 231 G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~-------------wmsa~e~~e~L~~~eAk~~GLiDE 297 (486)
+...+ .+....+ ....+-|++++|++.+.+++++++++ |++++ ||++.|++|.
T Consensus 102 ~~~~~----~K~~~~~-~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~---------eA~~~g~~d~ 167 (178)
T cd07021 102 NGAAD----EKVQSYW-RAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTAD---------EALKVGYAEG 167 (178)
T ss_pred ccchh----HHHHHHH-HHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHH---------HHHHhCCeEE
Confidence 43222 1222222 33345599999999999999999984 77766 8999999996
Q ss_pred HHhh
Q psy18232 298 KIGK 301 (486)
Q Consensus 298 iI~~ 301 (486)
+..+
T Consensus 168 ia~~ 171 (178)
T cd07021 168 IAGS 171 (178)
T ss_pred EECC
Confidence 6554
No 20
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.75 E-value=1.8e-17 Score=169.29 Aligned_cols=203 Identities=20% Similarity=0.125 Sum_probs=149.9
Q ss_pred EEEEccccCcch-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCC--ceEEEeccchhH
Q psy18232 71 IICVMGPIDDSL-------SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPP--IATWCVGQACSM 141 (486)
Q Consensus 71 IIfl~G~I~d~~-------a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~--V~tvv~G~AAS~ 141 (486)
+|.+.|.|.+.. .+.+.+.|..+..+++.|+|.|+||||||++.++..||++++.++.+ |++++-++|||+
T Consensus 63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG 142 (317)
T COG0616 63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG 142 (317)
T ss_pred EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence 578899998765 67888889999999999999999999999999999999999999864 777777799999
Q ss_pred HHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceee
Q psy18232 142 ASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221 (486)
Q Consensus 142 as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iM 221 (486)
|++||+++|++ ++.|++.+ - |=|-+.....+...+++.+-+..++-.| ++..++
T Consensus 143 GY~IA~aAd~I--~a~p~si~--G-SIGVi~~~~~~~~l~~k~Gv~~~~~~ag---------------------~~k~~~ 196 (317)
T COG0616 143 GYYIALAADKI--VADPSSIT--G-SIGVISGAPNFEELLEKLGVEKEVITAG---------------------EYKDIL 196 (317)
T ss_pred hhhhhccCCEE--EecCCcee--e-eceeEEecCCHHHHHHhcCCceeeeecc---------------------cccccc
Confidence 99999999986 55554411 1 1122333445666666666665555222 111110
Q ss_pred ecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 222 IHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 222 IHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
.|.. .-+..+...-..++++..+.+.+.+++.++.+.+++.+..++++|.+.+ |++.||+||..+.
T Consensus 197 --~~~~--~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~----------A~~~gLVDelg~~ 262 (317)
T COG0616 197 --SPFR--PLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQ----------ALELGLVDELGGL 262 (317)
T ss_pred --Cccc--CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHH----------hhhcCCchhcCCH
Confidence 0111 1122333444578888899999999999999999999999999999987 9999999965443
Q ss_pred ccccccCCCHHHHHHHHHhhhh
Q psy18232 302 STNLTEELSSVVKVTYITNFHK 323 (486)
Q Consensus 302 ~~d~e~~lta~eAv~~~~~~~k 323 (486)
+++++.....++
T Consensus 263 ----------~~av~~~~~~~~ 274 (317)
T COG0616 263 ----------DDAVKDAAELAG 274 (317)
T ss_pred ----------HHHHHHHHHhcC
Confidence 677776666554
No 21
>PRK10949 protease 4; Provisional
Probab=99.73 E-value=2.8e-17 Score=180.85 Aligned_cols=206 Identities=21% Similarity=0.159 Sum_probs=155.6
Q ss_pred EEEEccccCcc-------hHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcC---CCceEEEeccchh
Q psy18232 71 IICVMGPIDDS-------LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL---PPIATWCVGQACS 140 (486)
Q Consensus 71 IIfl~G~I~d~-------~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik---~~V~tvv~G~AAS 140 (486)
||++.|.|.++ ..+.+.++|..+..++++|.|+|+||||||++.++..|+++|+..+ +||.+.+-++|||
T Consensus 330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS 409 (618)
T PRK10949 330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS 409 (618)
T ss_pred EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence 68999999864 3578999999999999999999999999999999999999997664 5676666679999
Q ss_pred HHHHHHHcCCCCcccccCCceeEeecCCCc--cccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCc
Q psy18232 141 MASLLLAAGEKGMRHSLPNSRIMIHQPSGG--VQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 218 (486)
Q Consensus 141 ~as~Ia~aGd~~~R~a~~ni~I~INSPGG~--v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna 218 (486)
+|++||+++|++ +.+|.+. +++.++.+..++....|+++..+|...+. .+
T Consensus 410 ggY~iA~aad~I-----------~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~-----------------~~ 461 (618)
T PRK10949 410 GGYWISTPANYI-----------VASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSP-----------------LA 461 (618)
T ss_pred HHHHHHHhcCEE-----------EECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccc-----------------cC
Confidence 999999999985 4455433 34555566666666667777766654321 11
Q ss_pred eeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHH
Q psy18232 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEK 298 (486)
Q Consensus 219 ~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEi 298 (486)
.+-...|. +.+.-+.....++...+.+.+..++.+|++.+++++++++++|.+.+ |++.||+|+.
T Consensus 462 ~~~~~~~~-----s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~----------A~~~GLVD~l 526 (618)
T PRK10949 462 DVSITKAL-----PPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQD----------AKANGLVDSL 526 (618)
T ss_pred CccccCCC-----CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHH----------HHHcCCCccC
Confidence 11011111 12333445677788889999999999999999999999999998876 9999999965
Q ss_pred HhhccccccCCCHHHHHHHHHhhhhcccccc
Q psy18232 299 IGKSTNLTEELSSVVKVTYITNFHKIGAWFV 329 (486)
Q Consensus 299 I~~~~d~e~~lta~eAv~~~~~~~k~~a~~v 329 (486)
.+ .++|++.+.++++.+.+.+
T Consensus 527 G~----------~~~ai~~a~~~a~~~~~~v 547 (618)
T PRK10949 527 GD----------FDDAVAKAAELAKLKQWHL 547 (618)
T ss_pred CC----------HHHHHHHHHHHcCCCCceE
Confidence 44 4788988888887654433
No 22
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.70 E-value=1.1e-16 Score=175.39 Aligned_cols=203 Identities=20% Similarity=0.157 Sum_probs=147.8
Q ss_pred EEEEccccCcc-------hHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcC---CCceEEEeccchh
Q psy18232 71 IICVMGPIDDS-------LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL---PPIATWCVGQACS 140 (486)
Q Consensus 71 IIfl~G~I~d~-------~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik---~~V~tvv~G~AAS 140 (486)
+|++.|+|.+. ..+.+.++|..+..++..|.|+|+||||||+++++..|+++|+..+ +||.+.+.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999863 3578889999899999999999999999999999999999998654 6788888899999
Q ss_pred HHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCcee
Q psy18232 141 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220 (486)
Q Consensus 141 ~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~i 220 (486)
+|++|++++|++ ++.|++.+ | +++.++.+..++....++++..++..... + ++.
T Consensus 392 ggY~iA~aaD~I--~a~p~t~~------G-SIGv~~~~~~~~~~l~klGi~~~~~~t~~-------------~--~~~-- 445 (584)
T TIGR00705 392 GGYWIASAADYI--VASPNTIT------G-SIGVFSVLPTFENSLDRIGVHVDGVSTHE-------------L--ANV-- 445 (584)
T ss_pred HHHHHHHhCCEE--EECCCCee------e-cCEEEEEccCHHHHHHhcCCceEEEeccC-------------c--CCC--
Confidence 999999999963 44444321 1 22222333222333334444433332210 0 110
Q ss_pred eecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 221 MIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
-...| .+..+.+.....++...+.+.+.+++.+|++.+++++++++++|.. + +|++.||+|++ +
T Consensus 446 s~~~~-----~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg-~---------eA~~~GLVD~i-g 509 (584)
T TIGR00705 446 SLLRP-----LTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTG-E---------DAVSNGLVDAL-G 509 (584)
T ss_pred CCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCH-H---------HHHHcCCcccC-C
Confidence 01112 2345667778888899999999999999999999999999999844 4 59999999966 3
Q ss_pred hccccccCCCHHHHHHHHHhhhhc
Q psy18232 301 KSTNLTEELSSVVKVTYITNFHKI 324 (486)
Q Consensus 301 ~~~d~e~~lta~eAv~~~~~~~k~ 324 (486)
. .++|++.+.++++.
T Consensus 510 ~---------~~~Ai~~a~~la~~ 524 (584)
T TIGR00705 510 G---------LDEAVAKAAKLAHC 524 (584)
T ss_pred C---------HHHHHHHHHHHcCC
Confidence 2 37888888888876
No 23
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.62 E-value=1.4e-14 Score=139.35 Aligned_cols=199 Identities=16% Similarity=0.150 Sum_probs=147.8
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcC--CCceEEEeccchhHHHHHHHc
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL--PPIATWCVGQACSMASLLLAA 148 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik--~~V~tvv~G~AAS~as~Ia~a 148 (486)
+|.+.|+|+ .....+.+.|..+..++..+.|.|++|||||++..+..|++.|+..+ +||.+++.|.|+|+|++|+++
T Consensus 4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a 82 (207)
T TIGR00706 4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA 82 (207)
T ss_pred EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence 688999998 56678889999888888999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 149 GEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 149 Gd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
+|+ |++.|+..+-.. |-+...+.+-+.+++.+-++.++-.|--=++ . +|..
T Consensus 83 aD~--i~a~p~a~vg~i---Gv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~--------------~---------~~~~- 133 (207)
T TIGR00706 83 ADE--IVANPGTITGSI---GVILQGANVEKLYEKLGIEFEVIKSGEYKDI--------------G---------SPTR- 133 (207)
T ss_pred CCE--EEECCCCeEEee---eEEEecCCHHHHHHhCCceEEEEEcCCCcCC--------------C---------CCCC-
Confidence 996 577766543221 1122233455667777777777644422111 1 1211
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccC
Q psy18232 229 VQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEE 308 (486)
Q Consensus 229 ~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~ 308 (486)
.-...+-+.....++.+.+.+.+.+++.+|++.+++++.+++.+|. ++ +|++.||+|++...
T Consensus 134 -~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~-~~---------~A~~~gLvD~i~~~------- 195 (207)
T TIGR00706 134 -ELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFT-GR---------QALKLRLVDKLGTE------- 195 (207)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCccc-HH---------HHHHcCCCcccCCH-------
Confidence 0122333444567778888999999999999999999999988864 34 69999999976543
Q ss_pred CCHHHHHHHHHh
Q psy18232 309 LSSVVKVTYITN 320 (486)
Q Consensus 309 lta~eAv~~~~~ 320 (486)
+++++.+.+
T Consensus 196 ---~~~~~~~~~ 204 (207)
T TIGR00706 196 ---DDALKWLAE 204 (207)
T ss_pred ---HHHHHHHHH
Confidence 566655544
No 24
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.60 E-value=2.6e-14 Score=136.95 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=147.6
Q ss_pred EEEEccccC---cchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhc---CCCceEEEeccchhHHHH
Q psy18232 71 IICVMGPID---DSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYV---LPPIATWCVGQACSMASL 144 (486)
Q Consensus 71 IIfl~G~I~---d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~i---k~~V~tvv~G~AAS~as~ 144 (486)
+|.+.|+|+ ......+.++|..+..+++.+.|.|++|||||++..+..+++.++.. ++||.+++.|.|+|+|++
T Consensus 4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~ 83 (208)
T cd07023 4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYY 83 (208)
T ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHH
Confidence 688999999 77889999999999999999999999999999999999999988766 469999999999999999
Q ss_pred HHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 145 LLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 145 Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+++++|. |++.|+..+-.. |.....+-+-+.+++.+-++.+.-.|---+ ...| +.
T Consensus 84 lA~aaD~--i~a~~~s~~g~i---G~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~--------------~~~~------~~ 138 (208)
T cd07023 84 IAAAADK--IVANPTTITGSI---GVIGQGPNLEELLDKLGIERDTIKSGPGKD--------------KGSP------DR 138 (208)
T ss_pred HHhhCCE--EEECCCCeEEeC---cEEEecCCHHHHHHhcCCceEEEecCCCcc--------------CCCC------CC
Confidence 9999996 588777644322 333444456677778888887764432111 1111 11
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 225 P~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
+ -...+-......+..+.+.+.+.+++.+|++.+++++..++.+|.. + +|++.||+|++..
T Consensus 139 ~-----~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a-~---------~A~~~gLiD~i~~ 199 (208)
T cd07023 139 P-----LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTG-R---------QALELGLVDELGG 199 (208)
T ss_pred C-----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEH-H---------HHHHcCCCcccCC
Confidence 1 1233555566788888899999999999999999999999888754 3 6999999997654
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.54 E-value=1.1e-13 Score=133.57 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=135.7
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcC--CCceEEEeccchhHHHHHHHcCCCCcccccC
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVL--PPIATWCVGQACSMASLLLAAGEKGMRHSLP 158 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik--~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ 158 (486)
.....+.+.|..++.++..+.|.|++|||||++.....|++.++..+ +||.+++.|.|+|+|+++++++|+ +++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence 35679999999999999999999999999999999999999999988 999999999999999999999996 57777
Q ss_pred CceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHH
Q psy18232 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQI 238 (486)
Q Consensus 159 ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~ 238 (486)
+..+... |.+...+-+-..+++.+-+..++-.|---++ .. |.. .-+..+-+.
T Consensus 103 ~a~~g~i---G~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~--------------~~---------~~~--~~s~~~re~ 154 (214)
T cd07022 103 TAGVGSI---GVVASHVDQSKALEKAGLKVTLIFAGAHKVD--------------GN---------PDE--PLSDEARAR 154 (214)
T ss_pred CCeEEee---eEEEecCCHHHHHHhCCCeEEEEEcCCCccC--------------CC---------CCC--CCCHHHHHH
Confidence 7765433 3333344445667777777777644422221 11 111 012234445
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 239 QAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 239 ~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
..+.+..+.+.+.+.+++.+|++.+++++.+ +..|.. + +|++.||+|++..
T Consensus 155 ~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~-~---------~Al~~gLvD~i~~ 205 (214)
T cd07022 155 LQAEVDALYAMFVAAVARNRGLSAAAVRATE-GGVFRG-Q---------EAVAAGLADAVGT 205 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeH-H---------HHHHcCCCcccCC
Confidence 5667788889999999999999999999888 666544 3 6999999996543
No 26
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.52 E-value=2.6e-14 Score=137.47 Aligned_cols=128 Identities=29% Similarity=0.336 Sum_probs=101.6
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDI 236 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI 236 (486)
.++|.++||||||+|++|+||||+|++++++|+|+ .-+.+||+-..=...| -+.-|+.+-+...+.|.+....
T Consensus 57 ~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti---~~G~AaSmgs~l~~aG----~~g~r~~lPnsrimIHqP~gg~ 129 (200)
T COG0740 57 DKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTI---CMGQAASMGSVLLMAG----DKGKRFALPNARIMIHQPSGGA 129 (200)
T ss_pred CCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEE---EecHHHhHHHHHHhcC----CCCCceeCCCceEEEecCCccC
Confidence 57999999999999999999999999999999998 6665555533333222 2344576666666677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHH
Q psy18232 237 QIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVT 316 (486)
Q Consensus 237 ~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~ 316 (486)
.+++.+++...+.+.+ ++++|...+|+++|..-|++..++|+++||+++||++
T Consensus 130 ~G~a~Di~i~A~ei~~---------------------------~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~ 182 (200)
T COG0740 130 QGQASDIEIHAREILK---------------------------IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKE 182 (200)
T ss_pred ccCHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHH
Confidence 8899988777666621 2346778899999999999999999999999999998
Q ss_pred HH
Q psy18232 317 YI 318 (486)
Q Consensus 317 ~~ 318 (486)
|-
T Consensus 183 yG 184 (200)
T COG0740 183 YG 184 (200)
T ss_pred cC
Confidence 64
No 27
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.49 E-value=5.1e-13 Score=128.82 Aligned_cols=189 Identities=18% Similarity=0.075 Sum_probs=130.4
Q ss_pred EEEEccccCcch-------HHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHh---hcCCCceEEEeccchh
Q psy18232 71 IICVMGPIDDSL-------SSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQ---YVLPPIATWCVGQACS 140 (486)
Q Consensus 71 IIfl~G~I~d~~-------a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~---~ik~~V~tvv~G~AAS 140 (486)
||.+.|+|.+.. ...+.+.|..++.+++.+.|+|.+|||||++.+...+++.|+ ..++||.+++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 577888887743 368899999999999999999999999999999888888654 4567999999999999
Q ss_pred HHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCcee
Q psy18232 141 MASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220 (486)
Q Consensus 141 ~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~i 220 (486)
+|++|++++|. +++.|+..+- |-| .+...+..-..+.+.+-+..+.-. .+..+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~g--siG-v~~~~~~~~~~l~k~Gv~~~~~~~---------------------~g~~k~ 137 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTG--SIG-IFGVITTVENSLDSIGVHTDGVST---------------------SPLADV 137 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEE--EeE-EEEEcCCHHHHHHhcCCceEEEEe---------------------cCcccC
Confidence 99999999996 4666665443 111 111111112233333333332211 111122
Q ss_pred eecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 221 MIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 221 MIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
+.|+|.. .+.-......+..+.+.+.+.+++.++++++++++..++..|.. + +|++.||+|++..
T Consensus 138 ~~~~~~s-----~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~-~---------~A~~~GLvD~i~~ 202 (211)
T cd07019 138 SITRALP-----PEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTG-Q---------DAKANGLVDSLGD 202 (211)
T ss_pred CCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeH-H---------HHHHcCCcccCCC
Confidence 2344432 12333445678888999999999999999999999887664443 3 6999999996543
No 28
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.49 E-value=4.6e-13 Score=125.33 Aligned_cols=143 Identities=20% Similarity=0.061 Sum_probs=111.5
Q ss_pred hHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhc---CCCceEEEeccchhHHHHHHHcCCCCcccccC
Q psy18232 82 LSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYV---LPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158 (486)
Q Consensus 82 ~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~i---k~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ 158 (486)
+...+.+.+..+..++..+.|+|.+|||||++.....+++.++.. ++||..++-|.|+|+|+++++++|.
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~------- 95 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY------- 95 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE-------
Confidence 356889999999999999999999999999988777777765543 4667776667667777766666664
Q ss_pred CceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHH
Q psy18232 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQI 238 (486)
Q Consensus 159 ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~ 238 (486)
++|.|++++++|.+..+ ...
T Consensus 96 -----------------------------------------------------i~a~~~a~~~~~G~~~~-------~~~ 115 (177)
T cd07014 96 -----------------------------------------------------IVANPSTLVGSIGIFGV-------QLA 115 (177)
T ss_pred -----------------------------------------------------EEECCCCeEEEechHhh-------HHH
Confidence 47777888887755432 122
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 239 QAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 239 ~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
....+..+.+.+.+.+++.+|++.+++.+++....|++++ +|++.||+|++..
T Consensus 116 ~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~---------~A~~~GLVD~v~~ 168 (177)
T cd07014 116 DQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQ---------DAKANGLVDSLGS 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHH---------HHHHcCCcccCCC
Confidence 3456777888999999999999999999998877788877 8999999997654
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.43 E-value=2.3e-12 Score=132.67 Aligned_cols=188 Identities=14% Similarity=0.054 Sum_probs=119.6
Q ss_pred EEEEccccCcchHHHHHHHHHhh-hhcCCCCCeEEEEeCCCcccchHHHHHHHHhhc---CCCceEEEeccchhHHHHHH
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFL-QSESSKKPIHMYINSPGGSVTSGLGIYDTMQYV---LPPIATWCVGQACSMASLLL 146 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L-~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~i---k~~V~tvv~G~AAS~as~Ia 146 (486)
||.+.|+|+......+.+.+..+ +...+.+.|.|+||||||++.++..++..+... +.||++++.++|||+|+++|
T Consensus 94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA 173 (330)
T PRK11778 94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA 173 (330)
T ss_pred EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence 47789999986554333333321 112223789999999999998877676665544 46787777789999999999
Q ss_pred HcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 147 AAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 147 ~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
+++|++ ++.|... +.|- |-+.....+-..+++++-++.++-.|-= |+... |.
T Consensus 174 saAD~I--~A~P~a~--vGSI-GVi~~~~~~~~lLeKlGI~~evi~aG~y--------------K~a~~---------pf 225 (330)
T PRK11778 174 CVADKI--IAAPFAI--VGSI-GVVAQIPNFHRLLKKHDIDVELHTAGEY--------------KRTLT---------LF 225 (330)
T ss_pred HhCCEE--EECCCCe--EEee-eeeeeccCHHHHHHHCCCceEEEEecCc--------------cCCCC---------CC
Confidence 999986 4444432 2221 1133344555667777777777633311 11111 11
Q ss_pred CCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 227 GGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 227 gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
.. -+..+-+...++++...+.+.+..+++++ ..++++..++++|.+.+ |++.||+|++..
T Consensus 226 ~~--~see~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~v~~g~~----------Al~~GLVD~Ig~ 285 (330)
T PRK11778 226 GE--NTEEGREKFREELEETHQLFKDFVQRYRP--QLDIDKVATGEHWYGQQ----------ALELGLVDEIQT 285 (330)
T ss_pred CC--CCHHHHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhCCCcCHHH----------HHHCCCCCcCCC
Confidence 10 12233344566677778888888888664 34566777888887655 999999996543
No 30
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.39 E-value=5.2e-13 Score=128.92 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=94.2
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDI 236 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI 236 (486)
.++++++||||||++++|+||||+|++++++|+|+ .-+-+||.-..--..| -+.-|+|.-+..-+.|.+....
T Consensus 57 ~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti---~~G~AaS~As~il~aG----~kgkR~~~pna~iMIHqp~~~~ 129 (201)
T PRK14513 57 EQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTI---CVGIAMSMGSVLLMAG----DKGKRMALPNSRIMIHQGSAGF 129 (201)
T ss_pred CCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEE---EEeeehhhHHHHHhcC----CCCcEEecCCeEEEEecCCCCC
Confidence 47899999999999999999999999999999997 4444444311111111 1123567655555666666566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHH
Q psy18232 237 QIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVT 316 (486)
Q Consensus 237 ~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~ 316 (486)
..++.++....+.+. + .++.+...+|+++|+..|++.+++++++||+++||++
T Consensus 130 ~G~a~di~~~a~el~------------~---------------~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~e 182 (201)
T PRK14513 130 RGNTPDLEVQAKEVL------------F---------------LRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKA 182 (201)
T ss_pred CCCHHHHHHHHHHHH------------H---------------HHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHH
Confidence 777888776665552 1 1246778899999999999999999999999999998
Q ss_pred H
Q psy18232 317 Y 317 (486)
Q Consensus 317 ~ 317 (486)
+
T Consensus 183 y 183 (201)
T PRK14513 183 Y 183 (201)
T ss_pred c
Confidence 6
No 31
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.38 E-value=5.8e-12 Score=122.42 Aligned_cols=186 Identities=12% Similarity=0.015 Sum_probs=133.6
Q ss_pred cccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhc---CCCceEEEeccchhHHHHHHHcCCCC
Q psy18232 76 GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYV---LPPIATWCVGQACSMASLLLAAGEKG 152 (486)
Q Consensus 76 G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~i---k~~V~tvv~G~AAS~as~Ia~aGd~~ 152 (486)
+..+......+.++|..+..++..+.|.|++|||||++.+...|++.|+.. ++||.+++.+ |+|.|++|++++|++
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I 102 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADEI 102 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEE
Confidence 334556778999999999999999999999999999999999999999765 4788888776 999999999999975
Q ss_pred cccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCC
Q psy18232 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQ 232 (486)
Q Consensus 153 ~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~ 232 (486)
|+.|+..+... |-+...+.+-+.+++.+-++.++-.|-=-+++ . |.....=+
T Consensus 103 --~a~p~~~vg~i---Gv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~--------------~---------~~~~~~~s 154 (222)
T cd07018 103 --YLNPSGSVELT---GLSAETLFFKGLLDKLGVEVQVFRVGEYKSAV--------------E---------PFTRDDMS 154 (222)
T ss_pred --EECCCceEEee---ccchhhhhHHHHHHHcCCcEEEEEEecccccc--------------c---------hhhcccCC
Confidence 66555543331 12222334556777777777776444222211 1 11000001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHh
Q psy18232 233 ATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 233 a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~ 300 (486)
..+-....+.+..+.+.+.+..++.++++.+++++..++.+|... +|++.||+|++..
T Consensus 155 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~----------~A~~~GLvD~i~~ 212 (222)
T cd07018 155 PEAREQTQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAE----------EALEAGLVDGLAY 212 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHH----------HHHHCCCCCcCCc
Confidence 223334456677788899999999999999999999988877665 4999999996554
No 32
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.34 E-value=2.3e-12 Score=126.09 Aligned_cols=129 Identities=16% Similarity=0.049 Sum_probs=78.0
Q ss_pred cCCceeEeecCCCccccchhhh-----ccccccCCCeEEEEecccchhhHHHHhhccccccccc--CCceeeecCCCCCc
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIY-----DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL--PNSRIMIHQPSGGV 229 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIy-----D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~--Pna~iMIHqP~gg~ 229 (486)
.+++.++||||||+++.|..|- -++-..-..+..-|.-++-+ ++|+..+.-.+. +.-|++.-+..-+.
T Consensus 70 ~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G-----~AaS~AslIl~aG~kg~R~alpns~iMI 144 (222)
T PRK12552 70 EKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIG-----QAMGTAAMILSAGTKGQRASLPHATIVL 144 (222)
T ss_pred CCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEe-----ehhhHHHHHHhCCCCCceecCCCcEEEe
Confidence 4789999999999988774321 01111111122222222222 122222211111 12255544444455
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCC
Q psy18232 230 QGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEEL 309 (486)
Q Consensus 230 ~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~l 309 (486)
|.+......++.++....+.+.+ +++.+...+|+++|+..|+|.+++++++||
T Consensus 145 HqP~~~~~G~A~di~~~a~el~~---------------------------~r~~l~~iya~~TG~~~e~I~~d~~rd~wm 197 (222)
T PRK12552 145 HQPRSGARGQATDIQIRAKEVLH---------------------------NKRTMLEILSRNTGQTVEKLSKDTDRMFYL 197 (222)
T ss_pred ccCCcccccCHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHCCCHHHHHHHhcCCCcC
Confidence 55555566778877776666521 234677789999999999999999999999
Q ss_pred CHHHHHHH
Q psy18232 310 SSVVKVTY 317 (486)
Q Consensus 310 ta~eAv~~ 317 (486)
+++||++|
T Consensus 198 sA~EA~ey 205 (222)
T PRK12552 198 TPQEAKEY 205 (222)
T ss_pred CHHHHHHc
Confidence 99999997
No 33
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.34 E-value=1.9e-12 Score=126.74 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=93.1
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccccccccc--CCceeeecCCCCCccCChH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL--PNSRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~--Pna~iMIHqP~gg~~G~a~ 234 (486)
.+++.++||||||++++|++|||+|++++++|+|+ ..+-+||. |+- -.+. +..|+|.-+..-+.+.+..
T Consensus 84 ~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv---~~G~AAS~----Asl--Il~aG~~gkR~~~pna~iMiHqP~~ 154 (221)
T PRK14514 84 GKDISIYINSPGGSVYAGLGIYDTMQFISSDVATI---CTGMAASM----ASV--LLVAGTKGKRSALPHSRVMIHQPLG 154 (221)
T ss_pred CCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEE---EEEEehhH----HHH--HHhcCCCCceeeCCCCEEEeccCCc
Confidence 36899999999999999999999999999999997 43433332 211 1222 2236776555556666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 235 dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
....++.++....+.+.+ +++.+...+|+++|...|++.+++++++||+++||
T Consensus 155 ~~~G~a~di~i~a~el~~---------------------------~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA 207 (221)
T PRK14514 155 GAQGQASDIEITAREIQK---------------------------LKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEA 207 (221)
T ss_pred ccCCCcchHHHHHHHHHH---------------------------HHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHH
Confidence 567778877665555422 22466778999999999999999999999999999
Q ss_pred HHH
Q psy18232 315 VTY 317 (486)
Q Consensus 315 v~~ 317 (486)
++|
T Consensus 208 ~ey 210 (221)
T PRK14514 208 KEY 210 (221)
T ss_pred HHc
Confidence 986
No 34
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.31 E-value=2.6e-12 Score=123.64 Aligned_cols=127 Identities=25% Similarity=0.214 Sum_probs=91.3
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDI 236 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI 236 (486)
.+++.++||||||++++|++|||+|++++++|+|+ .-+-++|.-..=-..| -+..|.|.-+..-+.+.+....
T Consensus 55 ~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~---~~G~AaS~AslIl~aG----~~~~R~~~p~a~iMIHqP~~~~ 127 (196)
T PRK12551 55 EKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTV---CVGLAASMGAFLLCAG----AKGKRSSLQHSRIMIHQPLGGA 127 (196)
T ss_pred CCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEE---EEEEehhHHHHHHhCC----CCCceecCCCCEEEEecCCccc
Confidence 47899999999999999999999999999999997 4343333211111111 1223556555555556555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHH
Q psy18232 237 QIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVT 316 (486)
Q Consensus 237 ~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~ 316 (486)
..++.++....+.+.+ +++.+...+|.++|...+++.+++++++||+++||++
T Consensus 128 ~G~a~di~~~a~~l~~---------------------------~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~e 180 (196)
T PRK12551 128 RGQASDIRIQADEILF---------------------------LKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVE 180 (196)
T ss_pred CCCcchHHHHHHHHHH---------------------------HHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHH
Confidence 6677777654444421 1246677899999999999999999999999999998
Q ss_pred H
Q psy18232 317 Y 317 (486)
Q Consensus 317 ~ 317 (486)
|
T Consensus 181 y 181 (196)
T PRK12551 181 Y 181 (196)
T ss_pred c
Confidence 6
No 35
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.29 E-value=6.1e-12 Score=121.42 Aligned_cols=125 Identities=24% Similarity=0.268 Sum_probs=94.0
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccccccccc--CCceeeecCCCCCccCChH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL--PNSRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~--Pna~iMIHqP~gg~~G~a~ 234 (486)
.+++.++||||||++++|++|||+|++++.+|+|+ .-+-++|.-..= .+. ++.|+|.-+..-+.+.+..
T Consensus 60 ~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~Tv---~~G~AaS~aslI------l~aG~kg~R~~~p~s~imiHqp~~ 130 (200)
T CHL00028 60 TKDLYLFINSPGGSVISGLAIYDTMQFVKPDVHTI---CLGLAASMASFI------LAGGEITKRLAFPHARVMIHQPAS 130 (200)
T ss_pred CCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEE---EEEehHHHHHHH------HhCCCCCCEEecCCCeEEEecCcc
Confidence 46899999999999999999999999999999997 444444331111 222 2357786666666665555
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHH
Q psy18232 235 D-IQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVV 313 (486)
Q Consensus 235 d-I~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~e 313 (486)
. ...++.++....+.+. + +++.+...+|+++|...|++.+++++++||+++|
T Consensus 131 ~~~~G~a~di~~~a~~l~------------~---------------~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~E 183 (200)
T CHL00028 131 SFYEGQASEFVLEAEELL------------K---------------LRETITRVYAQRTGKPLWVISEDMERDVFMSATE 183 (200)
T ss_pred CcCCCCHHHHHHHHHHHH------------H---------------HHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHH
Confidence 5 6677887766555552 1 1245677899999999999999999999999999
Q ss_pred HHHH
Q psy18232 314 KVTY 317 (486)
Q Consensus 314 Av~~ 317 (486)
|+++
T Consensus 184 A~ey 187 (200)
T CHL00028 184 AKAY 187 (200)
T ss_pred HHHc
Confidence 9985
No 36
>KOG0840|consensus
Probab=99.27 E-value=7.2e-12 Score=123.78 Aligned_cols=126 Identities=28% Similarity=0.371 Sum_probs=86.9
Q ss_pred ccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccc--cCCceeeecCCCCCccCCh
Q psy18232 156 SLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS--LPNSRIMIHQPSGGVQGQA 233 (486)
Q Consensus 156 a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m--~Pna~iMIHqP~gg~~G~a 233 (486)
..++|.++||||||++++|+||||+|++++++|.|| ++-+|++..+.-.+ .++-|..+-+..-+.+-+.
T Consensus 121 ~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Ti---------c~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~ 191 (275)
T KOG0840|consen 121 PKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTI---------CVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPS 191 (275)
T ss_pred CCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceee---------ehhhHHhHHHHHHhcCCCcceeecCCceeEEeccC
Confidence 357999999999999999999999999999999997 33344443332111 1122222222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHH
Q psy18232 234 TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVV 313 (486)
Q Consensus 234 ~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~e 313 (486)
..-..++.++....+.+. .+++.++..+|+.+|...|++.+++|++.+|++.|
T Consensus 192 gga~Gqa~Di~i~akE~~---------------------------~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~E 244 (275)
T KOG0840|consen 192 GGAGGQATDIVIQAKELM---------------------------RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEE 244 (275)
T ss_pred CCcCccchHHHHHHHHHH---------------------------HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHH
Confidence 334445555444333331 12468899999999999999999999999999999
Q ss_pred HHHH
Q psy18232 314 KVTY 317 (486)
Q Consensus 314 Av~~ 317 (486)
|++|
T Consensus 245 A~ey 248 (275)
T KOG0840|consen 245 AKEY 248 (275)
T ss_pred HHHh
Confidence 9995
No 37
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.16 E-value=7.6e-11 Score=113.48 Aligned_cols=126 Identities=21% Similarity=0.255 Sum_probs=88.6
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQ 237 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~ 237 (486)
+.+.++||||||++++|++|||+|++++.+|+|+ .-+-++| +|+-.--..-+..|++..+..-+.+.+...+.
T Consensus 54 ~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~---v~G~AaS----aaslIl~ag~~~~R~~~p~s~imiHqP~~~~~ 126 (197)
T PRK14512 54 KPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTI---GVGLVAS----AAALIFLAAKKESRFSLPNARYLLHQPLSGFK 126 (197)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEE---EEeeeHh----HHHHHHhcCCcCceeECCCCcEEEEcCccccc
Confidence 6799999999999999999999999999999997 4444333 22211000111235554444445555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHHH
Q psy18232 238 IQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVTY 317 (486)
Q Consensus 238 ~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~~ 317 (486)
.++.++....+.+ ++ .++.+...+|+++|...+++.+++++++||+++||+++
T Consensus 127 G~a~di~~~a~~l------------~~---------------~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~y 179 (197)
T PRK14512 127 GVATDIEIYANEL------------NK---------------VKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKY 179 (197)
T ss_pred cCHHHHHHHHHHH------------HH---------------HHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHc
Confidence 6777765433322 11 12456677999999999999999999999999999996
No 38
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.12 E-value=1.6e-10 Score=106.39 Aligned_cols=124 Identities=22% Similarity=0.240 Sum_probs=90.4
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQ 237 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~ 237 (486)
+.+.++||||||++.++++|++.+++++.++.+.+.|.|+|+|++++++ -+-++|-.....+.+.......
T Consensus 31 ~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a---------~d~~~~~~~a~~~~~~~~~~~~ 101 (160)
T cd07016 31 SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMA---------GDEVEMPPNAMLMIHNPSTGAA 101 (160)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhc---------CCeEEECCCcEEEEECCccccC
Confidence 5789999999999999999999999999999999999999999987665 3445553222223333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHHH
Q psy18232 238 IQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVTY 317 (486)
Q Consensus 238 ~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~~ 317 (486)
....++....+.+.+. .+++...+++..|+..+.+..+++...|++++||+++
T Consensus 102 g~~~~~~~~~~~l~~~---------------------------~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~ 154 (160)
T cd07016 102 GNADDLRKAADLLDKI---------------------------DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVEL 154 (160)
T ss_pred cCHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHc
Confidence 2333333333333211 2356667899999998899999999999999999975
No 39
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=99.06 E-value=2.3e-10 Score=109.52 Aligned_cols=124 Identities=26% Similarity=0.320 Sum_probs=88.1
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCC---ceeeecCCCCCccCCh
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN---SRIMIHQPSGGVQGQA 233 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pn---a~iMIHqP~gg~~G~a 233 (486)
.+++.++||||||+++.|++|||+|++++++|+|+ . .+.|+ .+|+- .+... -++|.-+...+.+.+.
T Consensus 56 ~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~---~-~G~Aa---Saasl---I~~aG~~~~r~~~p~s~imiH~p~ 125 (191)
T TIGR00493 56 EKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTI---C-IGQAA---SMGAF---LLSAGAKGKRFSLPNSRIMIHQPL 125 (191)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEE---E-EEeec---cHHHH---HHhcCCCCcEEecCCceEEEecCc
Confidence 46799999999999999999999999999999997 3 32221 12211 23322 3677555555555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHH
Q psy18232 234 TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVV 313 (486)
Q Consensus 234 ~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~e 313 (486)
.....++.++....+.+ +++ ++.+...+|+++|...+++.+++++++||+++|
T Consensus 126 ~~~~G~a~d~~~~a~~l------------~~~---------------~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~E 178 (191)
T TIGR00493 126 GGAQGQASDIEIQANEI------------LRL---------------KGLLNDILANHTGQSLEQIEKDTERDFFMSAEE 178 (191)
T ss_pred ccccCCcchhHHHHHHH------------HHH---------------HHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHH
Confidence 44455666655544443 111 235666799999999999999999999999999
Q ss_pred HHHH
Q psy18232 314 KVTY 317 (486)
Q Consensus 314 Av~~ 317 (486)
|+++
T Consensus 179 A~~~ 182 (191)
T TIGR00493 179 AKEY 182 (191)
T ss_pred HHHc
Confidence 9986
No 40
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.05 E-value=3.6e-10 Score=105.27 Aligned_cols=124 Identities=20% Similarity=0.240 Sum_probs=93.2
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCC---ceeeecCCCCCccCCh
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN---SRIMIHQPSGGVQGQA 233 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pn---a~iMIHqP~gg~~G~a 233 (486)
.+.+.++||||||+++++++|||+|++++.+|+|++.|+|+| +|.- .+... .+++......+.+.+.
T Consensus 30 ~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS-------~~~~---i~~a~~~g~r~~~p~a~~~ih~~~ 99 (162)
T cd07013 30 EKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAAS-------MGSV---IAMAGAKGKRFILPNAMMMIHQPW 99 (162)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhh-------HHHH---HHHcCCCCcEEEecCEEEEEccCc
Confidence 368899999999999999999999999999999999999987 3322 22222 3666554444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHH
Q psy18232 234 TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVV 313 (486)
Q Consensus 234 ~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~e 313 (486)
.....++.++....+.+.+.+ +.+...+|+++|+..+++.+++++++||+++|
T Consensus 100 ~~~~g~~~d~~~~~~~l~~~~---------------------------~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~e 152 (162)
T cd07013 100 GGTLGDATDMRIYADLLLKVE---------------------------GNLVSAYAHKTGQSEEELHADLERDTWLSARE 152 (162)
T ss_pred ccccCCHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHhCcCHHHHHHHHcCCccccHHH
Confidence 344455666655555553333 34566789999999999999999999999999
Q ss_pred HHHH
Q psy18232 314 KVTY 317 (486)
Q Consensus 314 Av~~ 317 (486)
|+++
T Consensus 153 A~~~ 156 (162)
T cd07013 153 AVEY 156 (162)
T ss_pred HHHc
Confidence 9985
No 41
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.03 E-value=4.4e-10 Score=108.27 Aligned_cols=125 Identities=28% Similarity=0.336 Sum_probs=89.8
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccc--cCCceeeecCCCCCccCChH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS--LPNSRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m--~Pna~iMIHqP~gg~~G~a~ 234 (486)
.+.+.++||||||+++.|++|||+|++++.+++|+ ..+-++| +|.-. .+ .++.++|.-....+.+....
T Consensus 61 ~~~I~l~InSpGG~v~~g~~I~d~i~~~~~~v~t~---~~G~aaS----~a~~I--~~ag~~~~r~~~p~s~imih~p~~ 131 (200)
T PRK00277 61 DKDIYLYINSPGGSVTAGLAIYDTMQFIKPDVSTI---CIGQAAS----MGAFL--LAAGAKGKRFALPNSRIMIHQPLG 131 (200)
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHHhcCCCEEEE---EEeEecc----HHHHH--HhcCCCCCEEEcCCceEEeccCcc
Confidence 35799999999999999999999999999999997 4333322 22211 22 23457776555555554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 235 dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
....++.++....+.+. + +++.+...+|+++|+..+++.+++++++||+++||
T Consensus 132 ~~~G~a~di~~~a~~l~------------~---------------~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA 184 (200)
T PRK00277 132 GFQGQATDIEIHAREIL------------K---------------LKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEA 184 (200)
T ss_pred cccCChhHHHHHHHHHH------------H---------------HHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHH
Confidence 44556666665544442 1 22456677899999999999999999999999999
Q ss_pred HHH
Q psy18232 315 VTY 317 (486)
Q Consensus 315 v~~ 317 (486)
+++
T Consensus 185 ~e~ 187 (200)
T PRK00277 185 KEY 187 (200)
T ss_pred HHc
Confidence 985
No 42
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.99 E-value=7.6e-10 Score=103.71 Aligned_cols=125 Identities=30% Similarity=0.335 Sum_probs=87.1
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCC--ceeeecCCCCCccCChH
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN--SRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pn--a~iMIHqP~gg~~G~a~ 234 (486)
.+.+.++||||||++.++++|||.|++++.+|+|+ .-+-++| +|.-. .+..+ -++|..+...+.+....
T Consensus 39 ~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~---~~g~aaS----~~~~i--~~~g~~~~r~~~~~a~~~~h~~~~ 109 (171)
T cd07017 39 KKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTI---CLGLAAS----MGALL--LAAGTKGKRYALPNSRIMIHQPLG 109 (171)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEE---EEeEehh----HHHHH--HHcCCCCCEEEccchHHHHcCCCc
Confidence 36899999999999999999999999999999997 4333322 22221 22223 47775544444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 235 dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
.....++++....+.+. ...+++...++.++|+..+++.+++++++|++++||
T Consensus 110 ~~~g~~~~~~~~~~~l~---------------------------~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA 162 (171)
T cd07017 110 GAGGQASDIEIQAKEIL---------------------------RLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEA 162 (171)
T ss_pred cCCCCHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHH
Confidence 33333444443333331 123467788999999999999999999999999999
Q ss_pred HHH
Q psy18232 315 VTY 317 (486)
Q Consensus 315 v~~ 317 (486)
+++
T Consensus 163 ~e~ 165 (171)
T cd07017 163 KEY 165 (171)
T ss_pred HHc
Confidence 975
No 43
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.97 E-value=6.1e-09 Score=104.61 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=66.5
Q ss_pred EccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCC
Q psy18232 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152 (486)
Q Consensus 74 l~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~ 152 (486)
+...|+.+.++.+.+.+. ..++.++|.|.|+||||.+.|+..|.+.++.++.++..++-..|.|+|++||+++|++
T Consensus 68 i~~~I~i~dse~v~raI~---~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeI 143 (285)
T PF01972_consen 68 IYRYIDIDDSEFVLRAIR---EAPKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEI 143 (285)
T ss_pred cceeEcHhhHHHHHHHHH---hcCCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeE
Confidence 445677778888877775 4445678999999999999999999999999999999999999999999999999986
No 44
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-08 Score=108.39 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=111.2
Q ss_pred cEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEec---cchhHHHHHH
Q psy18232 70 RIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVG---QACSMASLLL 146 (486)
Q Consensus 70 RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G---~AAS~as~Ia 146 (486)
.++.+.|+|++.+++.+.+.|...+.+ +...+.+.+|+|||-+++...|-+.|..++.||..++.- .|+|+|+||+
T Consensus 29 ~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~ 107 (436)
T COG1030 29 YVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL 107 (436)
T ss_pred EEEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence 467899999999999999999866655 467999999999999999999999999999998888763 4666666666
Q ss_pred HcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 147 AAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 147 ~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
++.+.+ .|.|++.+.-.+|-
T Consensus 108 m~~hia------------------------------------------------------------aMAPgT~iGaa~Pi 127 (436)
T COG1030 108 MATHIA------------------------------------------------------------AMAPGTNIGAATPI 127 (436)
T ss_pred HhcChh------------------------------------------------------------hhCCCCccccccee
Confidence 666642 56666666666665
Q ss_pred CCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHH
Q psy18232 227 GGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIE 297 (486)
Q Consensus 227 gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDE 297 (486)
.+. |...+-+...+.+. ...+-.++..|+..+-.+++...+.-++++ ||.+.|.+|=
T Consensus 128 ~~~-g~~~~~~~~~n~~~----ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~---------eA~~~~vid~ 184 (436)
T COG1030 128 AGG-GTSAKEANTTNAAV----AYIRSLAEERGRNPTWAERFVTENLSLTAE---------EALRQGVIDL 184 (436)
T ss_pred cCC-CCCccchhhHHHHH----HHHHHHHHHcCCChHHHHHHhhhccCCChh---------HHHhcCcccc
Confidence 432 22221111111111 222335788899999999998888755555 8999999993
No 45
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.88 E-value=3.2e-09 Score=100.48 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=86.6
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEe---cccchhhHHHHhhcccccccccCCceeeecCCCCCccCChH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV---GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vd---GlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~ 234 (486)
+.+.+.||||||.+.++.+||++|++.+.+|.|++. |+|+|+|++|+++ -+-+.|......|..+...
T Consensus 31 ~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a---------~~~i~m~p~s~iG~~~pi~ 101 (172)
T cd07015 31 EAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALG---------SHLIAMAPGTSIGACRPIL 101 (172)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHh---------cCceEECCCCEEEEccccc
Confidence 567899999999999999999999999999999999 9999999998776 3446664444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 235 dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
.. .+...... ..+++....- ......|+++|..-+.+..+.+++.||+++||
T Consensus 102 ~~-g~~~~~~~---------------~~~ki~~~~~------------~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 102 GY-SQNGSIIE---------------APPKITNYFI------------AYIKSLAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred cC-CCCCcccc---------------chHHHHHHHH------------HHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 11 11000000 0112111110 11223688999999999999999999999999
Q ss_pred HHHH
Q psy18232 315 VTYI 318 (486)
Q Consensus 315 v~~~ 318 (486)
+++-
T Consensus 154 ~~~G 157 (172)
T cd07015 154 LKYG 157 (172)
T ss_pred HHcC
Confidence 9853
No 46
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.88 E-value=6.6e-10 Score=104.30 Aligned_cols=125 Identities=25% Similarity=0.257 Sum_probs=86.7
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCc-eeeecCCCCCccCChHHH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS-RIMIHQPSGGVQGQATDI 236 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna-~iMIHqP~gg~~G~a~dI 236 (486)
+++.++||||||++.+|++|||+|+.++.+|+|+ ..+.++|.-..-- ...... |+|......+.+......
T Consensus 47 ~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~---~~G~aaSaa~~i~-----~ag~~~~R~~~~~s~~m~H~p~~~~ 118 (182)
T PF00574_consen 47 KPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTV---VLGLAASAATLIF-----LAGDKGKRYASPNSRFMIHQPSTGS 118 (182)
T ss_dssp SEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEE---EEEEEETHHHHHH-----HTSSTTTEEE-TT-EEEES-CEEEE
T ss_pred ceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEE---EeCccccceehhh-----hcCCcCceeeeecCEEEeecceeec
Confidence 5789999999999999999999999999999998 6655544322222 111222 567554444555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHH
Q psy18232 237 QIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVT 316 (486)
Q Consensus 237 ~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~ 316 (486)
..++.++....+.+. + ..+++...+|.++|+..+.+.+++++++|++++||++
T Consensus 119 ~g~~~~l~~~~~~l~------------~---------------~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~ 171 (182)
T PF00574_consen 119 GGNASELREQAKELE------------K---------------LNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALE 171 (182)
T ss_dssp EEEHHHHHHHHHHHH------------H---------------HHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHH
T ss_pred ccccchhHHHHHHHH------------H---------------HHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHH
Confidence 335566555555442 1 1235667899999999999999999999999999998
Q ss_pred H
Q psy18232 317 Y 317 (486)
Q Consensus 317 ~ 317 (486)
+
T Consensus 172 ~ 172 (182)
T PF00574_consen 172 Y 172 (182)
T ss_dssp H
T ss_pred c
Confidence 5
No 47
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.86 E-value=6.6e-09 Score=100.70 Aligned_cols=124 Identities=25% Similarity=0.322 Sum_probs=87.8
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCC---ceeeecCCCCCccCCh
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN---SRIMIHQPSGGVQGQA 233 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pn---a~iMIHqP~gg~~G~a 233 (486)
.+.+.++||||||++.+|++|||+|+.++.+|+|+ ..+-++ .+|.- .++.. -|+|.-....+.+...
T Consensus 65 ~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~---~~G~aa----Saa~l---I~~ag~~~~R~~~p~s~imiH~p~ 134 (207)
T PRK12553 65 DRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTV---CTGQAA----SAGAV---LLAAGTPGKRFALPNARILIHQPS 134 (207)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEE---EEeehh----hHHHH---HHHcCCcCcEEECCCchhhhcCcc
Confidence 46899999999999999999999999999999997 433322 22322 22222 3566554444555443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCH
Q psy18232 234 --TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSS 311 (486)
Q Consensus 234 --~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta 311 (486)
.....++.++....+.+.+ +++++...+|+++|...+++.+++++++|+++
T Consensus 135 ~~~~~~G~a~d~~~~~~~l~~---------------------------~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta 187 (207)
T PRK12553 135 LGGGIRGQASDLEIQAREILR---------------------------MRERLERILAEHTGQSVEKIRKDTDRDKWLTA 187 (207)
T ss_pred ccCCCccCHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHhCCCHHHHHHHHhcCccccH
Confidence 2345556665544444421 22456677999999999999999999999999
Q ss_pred HHHHHH
Q psy18232 312 VVKVTY 317 (486)
Q Consensus 312 ~eAv~~ 317 (486)
+||+++
T Consensus 188 ~EA~e~ 193 (207)
T PRK12553 188 EEAKDY 193 (207)
T ss_pred HHHHHc
Confidence 999985
No 48
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.82 E-value=4.5e-08 Score=108.07 Aligned_cols=184 Identities=9% Similarity=0.001 Sum_probs=126.9
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEEeC-CCcccchHHHHHHHHhhcC---CCceEEEeccchhHHHHHHHcCCCCcccc
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYINS-PGGSVTSGLGIYDTMQYVL---PPIATWCVGQACSMASLLLAAGEKGMRHS 156 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~INS-PGGsv~aglaIyD~I~~ik---~~V~tvv~G~AAS~as~Ia~aGd~~~R~a 156 (486)
.....++.+|..+..++..|.|.|++|+ |||++.....|++.|+..+ +||..+.. .++|.++|||+++|++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~-~~~s~~YylAs~AD~I---- 150 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGT-NYSQGQYYLASFADEI---- 150 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEc-cccchhhhhhhhCCEE----
Confidence 4667999999999999999999999996 5777777889999998664 67777765 4689999999999974
Q ss_pred cCCceeEeecCCCcc-ccchh-----hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCcc
Q psy18232 157 LPNSRIMIHQPSGGV-QVGLG-----IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 230 (486)
Q Consensus 157 ~~ni~I~INSPGG~v-~~glA-----IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~ 230 (486)
+.| |.|.+ ..|+. .-+.+++.+-++++.-.|-==|+ .. |.....
T Consensus 151 ------~~~-p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa--------------~e---------pf~r~~ 200 (584)
T TIGR00705 151 ------ILN-PMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGA--------------VE---------PFSRKD 200 (584)
T ss_pred ------EEC-CCceEEeeceecccccHHHHHHHcCCeEEEeeccccccc--------------cC---------cccCCC
Confidence 444 44442 33443 33667777777777644422221 11 111000
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 231 GQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 231 G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
=...+-+.....+..+.+.+.+..++.++++.+++++.+++..|.-.+ ..-.++.+|++.||+|++...
T Consensus 201 mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~--~~g~~a~~A~~~gLVD~l~~~ 269 (584)
T TIGR00705 201 MSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQK--LNGDGARYALAEKLVTAVCSY 269 (584)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHh--hCCchHHHHHHCCCcccCCCH
Confidence 012233445667778888999999999999999999998877652100 001145689999999976543
No 49
>PRK10949 protease 4; Provisional
Probab=98.62 E-value=4.4e-07 Score=100.90 Aligned_cols=183 Identities=9% Similarity=-0.048 Sum_probs=121.1
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchH-HHHHHHHhhcC---CCceEEEeccchhHHHHHHHcCCCCcccc
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSG-LGIYDTMQYVL---PPIATWCVGQACSMASLLLAAGEKGMRHS 156 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~ag-laIyD~I~~ik---~~V~tvv~G~AAS~as~Ia~aGd~~~R~a 156 (486)
-.-..+++.|..+..++..+.|+|++|||||...+. ..|++.|+..+ +||..+. ..++|.+++||+++|++
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~~-~~~~s~~YyLASaAD~I---- 169 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVG-DSYSQGQYYLASFANKI---- 169 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEe-cCccchhhhhhhhCCEE----
Confidence 345689999999999999999999999999987766 68999987765 5676653 36789999999999974
Q ss_pred cCCceeEeecCCCccccchhh-----hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccC
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGI-----YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQG 231 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAI-----yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G 231 (486)
+.|..|+.-..|++. -++|++.+-++.+.-.|-==|+ +. |.....=
T Consensus 170 ------~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA--------------~e---------pf~r~~m 220 (618)
T PRK10949 170 ------YLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSA--------------VE---------PFIRDDM 220 (618)
T ss_pred ------EECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCC--------------CC---------cccCCCC
Confidence 455444443444433 3667777777776644422221 11 1110000
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHH--HHHHHHHHHhCCcHHHHhh
Q psy18232 232 QATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICF--WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 232 ~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e--~L~~~eAk~~GLiDEiI~~ 301 (486)
....-+.....+..+-+.+.+..++.++++.+++...+++-. +.++. -..+.+|++.||+|+....
T Consensus 221 S~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~----~~l~~~~~~~a~~Al~~GLVD~l~~~ 288 (618)
T PRK10949 221 SPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGIL----EGLTKVGGDTAKYALDNKLVDALASS 288 (618)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH----HhhhhcCCccHHHHHHCCCCCcCCCH
Confidence 112223345667777788889999999999999976555311 00000 1245689999999976443
No 50
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.56 E-value=1.3e-07 Score=89.90 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=82.7
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQ 237 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~ 237 (486)
+.+.+.||||||.+..+..|++.|++.+.++.+++.|.|+|+|++|+++ .+-.+|-.....|..|....-.
T Consensus 31 ~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a---------~d~i~m~p~a~iG~~~~v~~~~ 101 (178)
T cd07021 31 DAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALA---------ADEIYMAPGATIGAAEPIPGDG 101 (178)
T ss_pred CeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHh---------CCeEEECCCCeEecCeeEcCCC
Confidence 4577889999999999999999999999999999999999999998775 4556662222223333322110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccc-----------
Q psy18232 238 IQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLT----------- 306 (486)
Q Consensus 238 ~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e----------- 306 (486)
.. ... +++.+.+. .+....|++.|...+.....+|.+
T Consensus 102 ---~~--~~~---------------~K~~~~~~------------~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~ 149 (178)
T cd07021 102 ---NG--AAD---------------EKVQSYWR------------AKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGG 149 (178)
T ss_pred ---cc--chh---------------HHHHHHHH------------HHHHHHHHHhCCCHHHHHHHhhhhccccccccccc
Confidence 10 011 22222111 122347888899888888888887
Q ss_pred --cCCCHHHHHHH
Q psy18232 307 --EELSSVVKVTY 317 (486)
Q Consensus 307 --~~lta~eAv~~ 317 (486)
.||+++||++.
T Consensus 150 ~~l~lta~eA~~~ 162 (178)
T cd07021 150 ELLTLTADEALKV 162 (178)
T ss_pred ceeeeCHHHHHHh
Confidence 49999999974
No 51
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.49 E-value=2.2e-07 Score=85.17 Aligned_cols=121 Identities=21% Similarity=0.279 Sum_probs=85.7
Q ss_pred CceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC--CccCChHHH
Q psy18232 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG--GVQGQATDI 236 (486)
Q Consensus 159 ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g--g~~G~a~dI 236 (486)
.+.+.+|||||++..+.+|+++|++.+.+|.+++.|.++|+|.+|+++ -+.++| .|.+ +.+|.....
T Consensus 31 ~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~---------~d~~~~--~~~a~~~~~g~~~~~ 99 (161)
T cd00394 31 AIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATA---------ANKIVM--APGTRVGSHGPIGGY 99 (161)
T ss_pred eEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhC---------CCEEEE--CCCCEEEEeeeEEec
Confidence 455679999999999999999999999999999999999999876554 344554 4544 334544322
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 237 QIQA--EEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 237 ~~~A--eel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
.... .+.+...+.+..++ +.+....+...|+..+++.+.++...|++++||
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~---------------------------~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA 152 (161)
T cd00394 100 GGNGNPTAQEADQRIILYFI---------------------------ARFISLVAENRGQTTEKLEEDIEKDLVLTAQEA 152 (161)
T ss_pred CCCCChHHHHHHHHHHHHHH---------------------------HHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHH
Confidence 2111 22222222222222 345566788899998889999999999999999
Q ss_pred HHH
Q psy18232 315 VTY 317 (486)
Q Consensus 315 v~~ 317 (486)
+++
T Consensus 153 ~~~ 155 (161)
T cd00394 153 LEY 155 (161)
T ss_pred HHc
Confidence 974
No 52
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.47 E-value=6.4e-07 Score=82.59 Aligned_cols=151 Identities=15% Similarity=0.041 Sum_probs=93.8
Q ss_pred hhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHH
Q psy18232 124 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLL 203 (486)
Q Consensus 124 ~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~I 203 (486)
+..+.||++++.++++|.|++||++++++ |+.|.. .|.|-| .....+..-+.+++.+-++.++-.|---+++
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I--~~~p~s--~vgsiG-v~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~--- 74 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEI--YANPSS--SVGSIG-VSAERLFFKGLLEKLGVKVEVVRSGEYKSAG--- 74 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEE--EE-TT---EEE----EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC---
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEE--EecCCC--EEEEeC-hhhccccHHHHHHHCCCeEEEEecCcccccc---
Confidence 45678999999999999999999999985 444333 122221 1222234446677777777666333221110
Q ss_pred HhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHH
Q psy18232 204 LAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFW 283 (486)
Q Consensus 204 laAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~ 283 (486)
.|.... ...+-+...+.+..+.+.+.+..++.+|++.++++++.++.+|...
T Consensus 75 --------------------~~~~~~--s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~------ 126 (154)
T PF01343_consen 75 --------------------FPRDPM--SEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQ------ 126 (154)
T ss_dssp --------------------CTTSS----HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHH------
T ss_pred --------------------CcCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHH------
Confidence 111100 1223344566777788999999999999999999999998776654
Q ss_pred HHHHHHHHhCCcHHHHhhccccccCCCHHHHHHHHHhhhhc
Q psy18232 284 INGLYVKHTGLSIEKIGKSTNLTEELSSVVKVTYITNFHKI 324 (486)
Q Consensus 284 L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~~~~~~~k~ 324 (486)
+|++.||+|++.. .+|+++.+.+..+.
T Consensus 127 ----~A~~~GLiD~i~~----------~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 127 ----QALELGLIDEIGT----------FDEAIARLAKLAGV 153 (154)
T ss_dssp ----HHHHTTSSSEETS----------HHHHHHHHHHHCHS
T ss_pred ----HHHHcCchhhcCC----------HHHHHHHHHHHcCC
Confidence 5999999996544 36777777665543
No 53
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.29 E-value=1.7e-06 Score=82.27 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=81.4
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEe---cccchhhHHHHhhcccccccccCCceeeecCCCCCccCChH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV---GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQAT 234 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vd---GlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~ 234 (486)
+.+.+.||||||.+.++.+||+.|++++.+|.+.+. |.|+|+|++|+++ -+-++|-.....+..+...
T Consensus 31 ~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala---------~D~iva~p~a~~g~~~~~~ 101 (187)
T cd07020 31 DALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILLA---------AHIAAMAPGTNIGAAHPVA 101 (187)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHh---------CCceeECCCCcEEeccccc
Confidence 457889999999999999999999999999999998 9999999987765 4555553333222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHH
Q psy18232 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVK 314 (486)
Q Consensus 235 dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eA 314 (486)
.......+.....+.+ ..+. ......+.+.|...+...+++...+|++++||
T Consensus 102 ~~~~~~~~~~~~~~~~----------------~~~~------------~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA 153 (187)
T cd07020 102 IGGGGGSDPVMEKKIL----------------NDAV------------AYIRSLAELRGRNAEWAEKAVRESLSLTAEEA 153 (187)
T ss_pred cCCCCcchHHHHHHHH----------------HHHH------------HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHH
Confidence 0000010111111111 1000 11234577889887788888888999999999
Q ss_pred HHH
Q psy18232 315 VTY 317 (486)
Q Consensus 315 v~~ 317 (486)
+++
T Consensus 154 ~~~ 156 (187)
T cd07020 154 LKL 156 (187)
T ss_pred HHc
Confidence 984
No 54
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.16 E-value=3.8e-06 Score=86.46 Aligned_cols=62 Identities=19% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCceeEeecCCCccccchhhhccccccCCC--eEEEEecccchhhHHHHhhcccccccccCCceee
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPP--IATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~k--Itt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iM 221 (486)
+-+.+.||||||.+.+..-||+.+++++.+ |.+.|.++|||.|.+|++++++. +|-|++.+.
T Consensus 99 k~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd~I--~a~p~si~G 162 (317)
T COG0616 99 KAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADKI--VADPSSITG 162 (317)
T ss_pred ceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCCEE--EecCCceee
Confidence 457789999999999999999999999886 99999999999999999999986 899998776
No 55
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.99 E-value=3.1e-05 Score=74.70 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=55.1
Q ss_pred ceeEeecCCCccccchhhhccccccC--CCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 160 SRIMIHQPSGGVQVGLGIYDTMQYVL--PPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 160 i~I~INSPGG~v~~glAIyD~L~~~~--~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
+-+.+|||||++..+..|++.+++.+ .+|.++++|.++|+|.+++++|++ ++|.|++.+...
T Consensus 34 vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~--i~a~p~a~vg~i 97 (207)
T TIGR00706 34 LLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADE--IVANPGTITGSI 97 (207)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCE--EEECCCCeEEee
Confidence 34568999999999999999999998 899999999999999999999987 699999986543
No 56
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.48 E-value=0.00023 Score=68.42 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=50.6
Q ss_pred eeEeecCCCccccchhhhcccccc---CCCeEEEEecccchhhHHHHhhcccccccccCCceee
Q psy18232 161 RIMIHQPSGGVQVGLGIYDTMQYV---LPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221 (486)
Q Consensus 161 ~I~INSPGG~v~~glAIyD~L~~~---~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iM 221 (486)
-+.+|||||++.....++++++.. +.+|.++++|.++|+|..++++|+. |++.|++.+.
T Consensus 39 vl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~--i~a~~~s~~g 100 (208)
T cd07023 39 VLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADK--IVANPTTITG 100 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCE--EEECCCCeEE
Confidence 456799999988888888877654 5699999999999999999999986 6999999885
No 57
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=97.31 E-value=0.0021 Score=63.03 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=110.7
Q ss_pred EEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCC
Q psy18232 73 CVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 152 (486)
Q Consensus 73 fl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~ 152 (486)
..+++|-.++...+-.++..++ -....+.+|+||+.++++.++-+.++..+..+.|-
T Consensus 52 ~atPaiaaG~~~el~r~~~~~d----gr~l~VvVse~~a~~da~sal~~lir~~G~y~~t~------------------- 108 (245)
T COG3904 52 SATPAIAAGTPAELKRTLKTLD----GRQLPVVVSEPGANVDAASALGRLIRKAGLYIATG------------------- 108 (245)
T ss_pred cCCCcccCCCHHHHHHhhhhcc----CceeeEEEcCCCCCccHHHHHHHHHhccCceeEEE-------------------
Confidence 4456666666666666665333 34688899999999999999999998755444432
Q ss_pred cccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCC
Q psy18232 153 MRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQ 232 (486)
Q Consensus 153 ~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~ 232 (486)
+.+|||||++-.++++--.+++.+-++.+--..+|+|+-.+.+++|.. |++-|.+.+.+||+...-...
T Consensus 109 ---------v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCpl~fagGvr--Rvve~~ayiGVHq~~~~g~~~ 177 (245)
T COG3904 109 ---------VTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACPLMFAGGVR--RVVEDFAYIGVHQITTTGRRE 177 (245)
T ss_pred ---------EEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccchhhhhccee--eeecccceeeeeeccccCCcc
Confidence 457999999999999999999888888887778899988888888854 799999999999998643211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhc
Q psy18232 233 ATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTV 270 (486)
Q Consensus 233 a~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~ 270 (486)
.-...++....+..-.=...|-.-.|..+.-++.+.+
T Consensus 178 -r~~~~~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~ 214 (245)
T COG3904 178 -RIVNGKAKSANQKVTARLAAYLREMGIGPGLLQMMLA 214 (245)
T ss_pred -ccCcHhhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhc
Confidence 1111222222222111123355555666666555544
No 58
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.29 E-value=0.0013 Score=63.75 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=51.9
Q ss_pred eEeecCCCccccchhhhccccccC--CCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 162 IMIHQPSGGVQVGLGIYDTMQYVL--PPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 162 I~INSPGG~v~~glAIyD~L~~~~--~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+.++||||.+...-.+++++++.+ .+|.++++|.++|.|..++++|+. +++.|++++..
T Consensus 48 l~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~~a~~g~ 108 (214)
T cd07022 48 LDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTPTAGVGS 108 (214)
T ss_pred EEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcCCCeEEe
Confidence 357999998888888899998887 999999999999999999999986 69999998753
No 59
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=96.96 E-value=0.011 Score=55.37 Aligned_cols=112 Identities=10% Similarity=0.065 Sum_probs=66.3
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCccccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~ 157 (486)
++.+..+.+.+.+..++.++..+.|++.-+ |+...+|.-+.........+- +...+.
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~--~~~Fs~G~dl~~~~~~~~~~~---------~~~~~~------------ 79 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGA--GKAFCAGADLKELAALSDAGE---------EARAFI------------ 79 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECC--CCceEeCcCHHHHhcccccch---------hHHHHH------------
Confidence 345667788888888887666665555543 555555555444333211110 000100
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
.....++..+...+.++.+.+.|.+.+.|..++++++. |.+.+++++.+..+..|
T Consensus 80 --------------~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G 134 (195)
T cd06558 80 --------------RELQELLRALLRLPKPVIAAVNGAALGGGLELALACDI--RIAAEDAKFGLPEVKLG 134 (195)
T ss_pred --------------HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEEechhhhcC
Confidence 01223555666677777888888888888887777765 67888877776655443
No 60
>PRK11778 putative inner membrane peptidase; Provisional
Probab=96.91 E-value=0.0024 Score=66.54 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=51.3
Q ss_pred CceeEeecCCCccccc---hhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 159 NSRIMIHQPSGGVQVG---LGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 159 ni~I~INSPGG~v~~g---lAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
.+-+.||||||.+.+. ......+++.+.+|++.++++|||.|.++++++++. ++.|.+.+...
T Consensus 125 aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I--~A~P~a~vGSI 190 (330)
T PRK11778 125 EVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKI--IAAPFAIVGSI 190 (330)
T ss_pred eEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEE--EECCCCeEEee
Confidence 4778999999998762 333445666778999999999999999999999986 88888877633
No 61
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=96.88 E-value=0.0008 Score=68.31 Aligned_cols=130 Identities=19% Similarity=0.162 Sum_probs=91.9
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHH
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQ 237 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~ 237 (486)
..+++.||+|||.+.++..|-+.+++++.+++++|...|.|+|++|+++++.. +|.|++.+.--.|..+.. ++..+.
T Consensus 91 ~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeI--vM~p~a~LGpiDPqi~~~-pA~sil 167 (285)
T PF01972_consen 91 KPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEI--VMGPGAVLGPIDPQIGQY-PAASIL 167 (285)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeE--EECCCCccCCCCccccCC-ChHHHH
Confidence 35889999999999999999999999999999999999999999999999997 999999998777765421 121110
Q ss_pred ----------------H----HHHHHHHHHHHHHHHHHHHhCCCHHHHHhh---hccccccChhhHHHHHHHHHHHHhCC
Q psy18232 238 ----------------I----QAEEIINLKKQINGLYVKHTGLSIEKIGKS---TVCFYVLHDPYICFWINGLYVKHTGL 294 (486)
Q Consensus 238 ----------------~----~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~---m~rd~wmsa~e~~e~L~~~eAk~~GL 294 (486)
+ ..+.+.++++.+.+++.. +++.|+.+++ +....|.- + .-++.++|++.||
T Consensus 168 ~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~--~~~~eka~~ia~~L~~g~~tH-d---ypi~~eea~~lGL 241 (285)
T PF01972_consen 168 KAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKD--KMDEEKAEEIAEKLSSGKWTH-D---YPITVEEAKELGL 241 (285)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCC-C---CCCCHHHHHHcCC
Confidence 0 122333444444444433 4555554443 33455532 2 2677888999887
Q ss_pred cH
Q psy18232 295 SI 296 (486)
Q Consensus 295 iD 296 (486)
--
T Consensus 242 ~V 243 (285)
T PF01972_consen 242 PV 243 (285)
T ss_pred Cc
Confidence 53
No 62
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=96.61 E-value=0.0013 Score=63.74 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=50.4
Q ss_pred eEeecCCCccccchhhhcc---ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 162 IMIHQPSGGVQVGLGIYDT---MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 162 I~INSPGG~v~~glAIyD~---L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
+.++||||++.....+++. +++.+.+|.+++.|.++|.|..|+++|+. +++.|++++...
T Consensus 44 L~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~--i~a~~~a~~gsi 106 (211)
T cd07019 44 LRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANY--IVANPSTLTGSI 106 (211)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCE--EEEcCCCEEEEe
Confidence 3489999998877777765 45578899999999999999999999987 599999988633
No 63
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=96.43 E-value=0.033 Score=54.40 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=66.6
Q ss_pred CCcccchHHHHHHHHhhcCC--CceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccc---
Q psy18232 109 PGGSVTSGLGIYDTMQYVLP--PIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQY--- 183 (486)
Q Consensus 109 PGGsv~aglaIyD~I~~ik~--~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~--- 183 (486)
++++...-..+.+.|+.... +|..++ +.+|||||.+...-.|++.++.
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vv---------------------------L~~~s~gg~~~~~~el~~~i~~~~~ 76 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIV---------------------------LDLDGLSGGLAKLEELRQALERFRA 76 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEE---------------------------EECCCCCCCHHHHHHHHHHHHHHHH
Confidence 33444556677788877653 355444 4689999988888888888855
Q ss_pred cCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 184 VLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 184 ~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+.+|.++++| ++|.|.++++++++. +|.|++.+...-..
T Consensus 77 ~~kpVia~~~~-~~sggy~lasaad~I--~a~p~~~vg~iGv~ 116 (222)
T cd07018 77 SGKPVIAYADG-YSQGQYYLASAADEI--YLNPSGSVELTGLS 116 (222)
T ss_pred hCCeEEEEeCC-CCchhhhhhhhCCEE--EECCCceEEeeccc
Confidence 56789999997 899999999999874 99999999876443
No 64
>KOG1680|consensus
Probab=96.35 E-value=0.01 Score=60.39 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=98.2
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhh-cCCCceEEEeccchhHHHHHHHcCCCCcccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQY-VLPPIATWCVGQACSMASLLLAAGEKGMRHS 156 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~-ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a 156 (486)
++..+..++...+..+++++..+.|+|+ --|++.-+|--|- +|.. -..++.
T Consensus 61 l~~~~m~eL~~A~~~~e~D~s~~viVlt--G~gksFcsG~Dl~-e~~~~~~~~~~------------------------- 112 (290)
T KOG1680|consen 61 LCRATMLELAEAFKDFESDDSVGVIVLT--GSGKSFCSGADLK-EMKKDEFQDVS------------------------- 112 (290)
T ss_pred ccHHHHHHHHHHHHHhhccCcccEEEEE--cCCCccccccCHH-HHhhccccccc-------------------------
Confidence 4556778889999999998887777665 2234433332211 1111 000000
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCcc---CCh
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ---GQA 233 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~---G~a 233 (486)
+..-+..++.+.+++.||..-+.|.|-..|.-|++.||- |+|.|+|.++.-++..|.. |-.
T Consensus 113 --------------~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT 176 (290)
T KOG1680|consen 113 --------------DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGT 176 (290)
T ss_pred --------------cccccchhhhhhhcccceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCch
Confidence 011124456666788888888888888888888888876 7999999998777665541 212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHH
Q psy18232 234 TDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVV 313 (486)
Q Consensus 234 ~dI~~~Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~e 313 (486)
..+.. + -|.+ + ..+.|++.. .+++.||++.|++++++.... .-.|
T Consensus 177 ~rl~r--------------~----vG~s--~-----Ale~~ltg~----~~~AqeA~~~GlVn~Vvp~~~------~l~e 221 (290)
T KOG1680|consen 177 QRLPR--------------I----VGKS--R-----ALEMILTGR----RLGAQEAKKIGLVNKVVPSGD------ALGE 221 (290)
T ss_pred hhHHH--------------H----hChH--H-----HHHHHHhcC----cccHHHHHhCCceeEeecchh------HHHH
Confidence 21111 1 1111 1 113344443 455669999999998876522 2346
Q ss_pred HHHHHHhhhh
Q psy18232 314 KVTYITNFHK 323 (486)
Q Consensus 314 Av~~~~~~~k 323 (486)
|++..+..++
T Consensus 222 Av~l~~~Ia~ 231 (290)
T KOG1680|consen 222 AVKLAEQIAK 231 (290)
T ss_pred HHHHHHHHHh
Confidence 6666666555
No 65
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.30 E-value=0.066 Score=60.87 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=78.2
Q ss_pred ccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccc-------hHHHHHHHHh---hcCCCceEEEec
Q psy18232 67 LRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT-------SGLGIYDTMQ---YVLPPIATWCVG 136 (486)
Q Consensus 67 l~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~-------aglaIyD~I~---~ik~~V~tvv~G 136 (486)
.++|+-...|..+++......+.+...+.- .-||+-.|+|||.... .+.+|...+. ....|+.++++|
T Consensus 212 tke~~~rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViG 289 (762)
T PLN03229 212 TKENIMRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIG 289 (762)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 356666778888888888777766654443 4699999999997752 2345655444 556899999999
Q ss_pred cchhHHHHHHHcCCCCcccccCCceeEeecCCCcc
Q psy18232 137 QACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171 (486)
Q Consensus 137 ~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v 171 (486)
-+.|+|++....+|.+ ++.++..+.+-+|.|..
T Consensus 290 eggSGGAlA~g~aD~V--lMle~A~~sVisPEgaA 322 (762)
T PLN03229 290 EGGSGGALAIGCANKL--LMLENAVFYVASPEACA 322 (762)
T ss_pred CcchHHHHHhhcCCEE--EEecCCeEEecCHHHHH
Confidence 9999999999999974 89999999999998863
No 66
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.28 E-value=0.016 Score=60.32 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=52.5
Q ss_pred ccCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccch-------HHHHHHHH---hhcCCCceEEEec
Q psy18232 67 LRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTS-------GLGIYDTM---QYVLPPIATWCVG 136 (486)
Q Consensus 67 l~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~a-------glaIyD~I---~~ik~~V~tvv~G 136 (486)
.++|+-...|.++.+...+..+-+...+.- .-||+-.|||||..... +.+|...+ ...+.|+.++++|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 355665677888888887777666654443 56999999999976421 12333333 3445677777777
Q ss_pred cchhHHHHHHHcCCC
Q psy18232 137 QACSMASLLLAAGEK 151 (486)
Q Consensus 137 ~AAS~as~Ia~aGd~ 151 (486)
-+.|+|++....+|.
T Consensus 199 eg~sGGAla~~~aD~ 213 (319)
T PRK05724 199 EGGSGGALAIGVGDR 213 (319)
T ss_pred CccHHHHHHHhccCe
Confidence 666666655554553
No 67
>PRK05869 enoyl-CoA hydratase; Validated
Probab=96.25 E-value=0.061 Score=52.60 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=32.6
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
++.+.+.+.++.+.+.|.|...|.-++++|+- |++.+++++-+...
T Consensus 92 ~~~i~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~ 137 (222)
T PRK05869 92 VDAVAAIPKPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEI 137 (222)
T ss_pred HHHHHhCCCCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchh
Confidence 34456667788888888888888888888876 67777776654333
No 68
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.21 E-value=0.015 Score=60.48 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=51.8
Q ss_pred cCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccch-------HHHHHHHH---hhcCCCceEEEecc
Q psy18232 68 RERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTS-------GLGIYDTM---QYVLPPIATWCVGQ 137 (486)
Q Consensus 68 ~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~a-------glaIyD~I---~~ik~~V~tvv~G~ 137 (486)
++|+-...|.++.+...+..+-+...+.- .-||+-.+||||..+.. +.+|...+ ...+.|+.++++|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 56666667888888888877666644443 56999999999976422 22344433 33456777777776
Q ss_pred chhHHHHHHHcCC
Q psy18232 138 ACSMASLLLAAGE 150 (486)
Q Consensus 138 AAS~as~Ia~aGd 150 (486)
+.|+|++....+|
T Consensus 200 ggsGGAla~~~aD 212 (316)
T TIGR00513 200 GGSGGALAIGVGD 212 (316)
T ss_pred cccHHHhhhccCC
Confidence 6666665444444
No 69
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=96.11 E-value=0.057 Score=53.47 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=28.2
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
+.+...+.++.+.+.|.|.+.|.-++++++- |++.+++++.....
T Consensus 90 ~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~ 134 (259)
T PRK06688 90 RAIAALPKPVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFA 134 (259)
T ss_pred HHHHcCCCCEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchh
Confidence 3444556666777777777777766777665 56666666654433
No 70
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.09 E-value=0.014 Score=62.62 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=57.1
Q ss_pred CcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchH-------HHHHHHH---hhcCCCceEEEeccc
Q psy18232 69 ERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSG-------LGIYDTM---QYVLPPIATWCVGQA 138 (486)
Q Consensus 69 ~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~ag-------laIyD~I---~~ik~~V~tvv~G~A 138 (486)
+|+-.-.|.++++......+.+...+.. .-||+-+|||||.....+ .+|...+ ...+.|+.++++|-+
T Consensus 193 e~~~rnfG~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeG 270 (431)
T PLN03230 193 ENIYRNFAMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEG 270 (431)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3333334677777887777776655444 569999999999764222 2344433 344567777777766
Q ss_pred hhHHHHHHHcCCCCcccccCCceeEeecC
Q psy18232 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQP 167 (486)
Q Consensus 139 AS~as~Ia~aGd~~~R~a~~ni~I~INSP 167 (486)
.|+|++....||.. ++.++..+.+-||
T Consensus 271 gSGGAlalg~aD~V--lMle~A~ysVisP 297 (431)
T PLN03230 271 GSGGALAIGCGNRM--LMMENAVYYVASP 297 (431)
T ss_pred CcHHHHHhhcCCEE--EEecCCEEEecCH
Confidence 67766666556642 3444443333333
No 71
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=95.99 E-value=0.034 Score=52.17 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=69.8
Q ss_pred EeecCCCccccchhhhccc---cccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHHH
Q psy18232 163 MIHQPSGGVQVGLGIYDTM---QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQ 239 (486)
Q Consensus 163 ~INSPGG~v~~glAIyD~L---~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~ 239 (486)
.++||||++.....+++.+ ++.+.+|.+++.|.++|.|..++++ .+..+| .|.+.. +.. .+...
T Consensus 46 ~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a---------~D~i~a--~~~a~~-~~~-G~~~~ 112 (177)
T cd07014 46 RVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTP---------ANYIVA--NPSTLV-GSI-GIFGV 112 (177)
T ss_pred EeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHh---------CCEEEE--CCCCeE-EEe-chHhh
Confidence 3689999876666665544 4567899999999999998875554 344444 344322 221 12211
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhhccccccCCCHHHHHH
Q psy18232 240 AEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGKSTNLTEELSSVVKVT 316 (486)
Q Consensus 240 Aeel~~~r~~I~~iYA~~TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~ 316 (486)
....+..+.++| +.+....+...|+..+.+.+++....|+++++|++
T Consensus 113 ---~~~~~~~l~~~~---------------------------~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~ 159 (177)
T cd07014 113 ---QLADQLSIENGY---------------------------KRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKA 159 (177)
T ss_pred ---HHHHHHHHHHHH---------------------------HHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHH
Confidence 111122222222 23344567788888888888888889999999987
No 72
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=95.97 E-value=0.098 Score=54.58 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=74.4
Q ss_pred cCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccc-------hHHHHHHH---HhhcCCCceEEEecc
Q psy18232 68 RERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT-------SGLGIYDT---MQYVLPPIATWCVGQ 137 (486)
Q Consensus 68 ~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~-------aglaIyD~---I~~ik~~V~tvv~G~ 137 (486)
++|+-...|..+++...+..+.+...+.. .-||+-.|+|||...- .+.+|... +...+.|+.++++|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 44544456667777777777666544443 5699999999997642 12355554 356678999999999
Q ss_pred chhHHHHHHHcCCCCcccccCCceeEeecCCCcc
Q psy18232 138 ACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 171 (486)
Q Consensus 138 AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v 171 (486)
+.|+|++....+|.+ ++.++..+.+-||-|.+
T Consensus 203 ggsGGAlal~~aD~V--~m~e~a~~sVisPEg~a 234 (322)
T CHL00198 203 GGSGGALGIGIGDSI--MMLEYAVYTVATPEACA 234 (322)
T ss_pred ccHHHHHhhhcCCeE--EEeCCeEEEecCHHHHH
Confidence 999999888888865 99999999999998763
No 73
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.89 E-value=0.03 Score=56.57 Aligned_cols=81 Identities=17% Similarity=0.218 Sum_probs=50.5
Q ss_pred cCcEEEEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccch-------HHHHHHHHh---hcCCCceEEEecc
Q psy18232 68 RERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTS-------GLGIYDTMQ---YVLPPIATWCVGQ 137 (486)
Q Consensus 68 ~~RIIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~a-------glaIyD~I~---~ik~~V~tvv~G~ 137 (486)
++++...+|.++.+...+..+-+...+.. .-||+-.+||||..... +..+...+. ..+.|+.++++|.
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45566677888888888777666544443 56999999999987421 123333322 2345666666666
Q ss_pred chhHHHHHHHcCC
Q psy18232 138 ACSMASLLLAAGE 150 (486)
Q Consensus 138 AAS~as~Ia~aGd 150 (486)
+.|+|++....+|
T Consensus 147 ~~gGgA~a~~~~D 159 (256)
T PRK12319 147 GGSGGALALAVAD 159 (256)
T ss_pred cCcHHHHHhhcCC
Confidence 6666665555555
No 74
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=95.83 E-value=0.042 Score=54.72 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=30.8
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
+.+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+-.+
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~ 132 (256)
T TIGR03210 88 SAIRDVPKPVIARVQGYAIGGGNVLVTICDL--TIASEKAQFGQVGP 132 (256)
T ss_pred HHHHhCCCCEEEEECCEEehhhHHHHHhCCE--EEEeCCCEEecccc
Confidence 3445566677777778887777777777765 57777777765433
No 75
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=95.80 E-value=0.09 Score=52.41 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=27.6
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+.+.+.+.++.+-+.|.|...|.-++++|+- |++.+++++..
T Consensus 94 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 135 (256)
T PRK06143 94 DAVRHFPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGM 135 (256)
T ss_pred HHHHhCCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeC
Confidence 3445556667777777777777777777765 56667766654
No 76
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=95.80 E-value=0.11 Score=51.87 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=29.2
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+...+.++.+.+.|.|...|.-++++|+- |++.+++++..
T Consensus 90 l~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 129 (261)
T PRK03580 90 IFDLDKPVIAAVNGYAFGGGFELALAADF--IVCADNASFAL 129 (261)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeC
Confidence 34556777888888888888888888775 57777777654
No 77
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=95.71 E-value=0.15 Score=51.37 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCc
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 229 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~ 229 (486)
++.+++.+.++.+.+.|.|...|.-++++++- |++.+++++.+.....|.
T Consensus 106 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl 155 (277)
T PRK08258 106 VKAMRACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGL 155 (277)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCc
Confidence 34556667778888888888888888888875 678888877765554443
No 78
>PLN02888 enoyl-CoA hydratase
Probab=95.70 E-value=0.13 Score=51.63 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=26.2
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+...+.++.+.+.|.|...|.-++++++- |++.+++++..
T Consensus 95 i~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~ 134 (265)
T PLN02888 95 MERCRKPIIGAINGFAITAGFEIALACDI--LVASRGAKFID 134 (265)
T ss_pred HHhCCCCEEEEECCeeechHHHHHHhCCE--EEecCCCEecC
Confidence 34455667777777777777777777765 56666666654
No 79
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=95.69 E-value=0.077 Score=52.73 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=32.9
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
+..+...+.++.+.+.|.|...|.-++++++- |++.+++++......
T Consensus 91 ~~~l~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~ 137 (260)
T PRK07511 91 IRAIRAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVK 137 (260)
T ss_pred HHHHHcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccc
Confidence 34455667778888888888888888888765 577777776654433
No 80
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=95.65 E-value=0.11 Score=52.03 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=25.7
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++.+
T Consensus 89 ~i~~~~kPvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~ 129 (258)
T PRK06190 89 AWPAMRKPVIGAINGAAVTGGLELALACDI--LIASERARFAD 129 (258)
T ss_pred HHHhCCCCEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEEC
Confidence 344555666666677777666666666654 56666666653
No 81
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=95.62 E-value=0.088 Score=52.31 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=27.3
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++.....
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~ 130 (255)
T PRK09674 87 RLQAFNKPLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEI 130 (255)
T ss_pred HHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchh
Confidence 344556666666777777767666666665 56666666654433
No 82
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=95.59 E-value=0.2 Score=49.61 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCcHHHH
Q psy18232 283 WINGLYVKHTGLSIEKI 299 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI 299 (486)
.+++.||++.|+++++.
T Consensus 156 ~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 156 KLTAEQALATGMANRIG 172 (243)
T ss_pred CcCHHHHHHCCCccccc
Confidence 45556899999999773
No 83
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=95.56 E-value=0.17 Score=50.56 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=24.9
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.++..+.++.+.+.|.|...|.-++++++- |++.+++++.+
T Consensus 91 ~i~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 131 (261)
T PRK11423 91 MIQKFPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAM 131 (261)
T ss_pred HHHhCCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecC
Confidence 344455666666666666666666666654 46666666553
No 84
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=95.55 E-value=0.17 Score=50.24 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.6
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.++..+.++.+.+.|.|...|.-++++|+- |++.+++++......
T Consensus 97 ~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~ 141 (262)
T PRK07509 97 GWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAK 141 (262)
T ss_pred HHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhc
Confidence 344566777778888888888777777765 677777777654433
No 85
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=95.51 E-value=0.035 Score=54.35 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=71.9
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCccccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~ 157 (486)
++.+....+...|..++.+++.+ .+-+.+.|+...+|.-+-...... -.+...+
T Consensus 22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~-----------~~~~~~~------------- 75 (245)
T PF00378_consen 22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSD-----------EEEAREF------------- 75 (245)
T ss_dssp BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHH-----------HHHHHHH-------------
T ss_pred CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccc-----------ccccccc-------------
Confidence 45567788888888888887666 455566666666665553333320 0000000
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
......++..+...+.++.+.+.|.|...|.-++++++- |++.+++.+.......|
T Consensus 76 -------------~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 131 (245)
T PF00378_consen 76 -------------FRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLG 131 (245)
T ss_dssp -------------HHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGT
T ss_pred -------------chhhccccccchhhhhheeecccccccccccccccccce--EEeecccceeeeecccC
Confidence 112346778888888999999999999999988888876 68888888665444333
No 86
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=95.49 E-value=0.15 Score=50.80 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=25.6
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++.+
T Consensus 93 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~ 133 (261)
T PRK08138 93 AIAQCPKPVIAAVNGYALGGGCELAMHADI--IVAGESASFGQ 133 (261)
T ss_pred HHHhCCCCEEEEEccEEEcHHHHHHHhCCE--EEecCCCEeeC
Confidence 344556666677777777777666666654 45666665553
No 87
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=95.41 E-value=0.17 Score=50.21 Aligned_cols=42 Identities=12% Similarity=-0.088 Sum_probs=28.8
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
..+...+.++.+.+.|.|...|.-++++|+- |++.+++++..
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~ 129 (249)
T PRK07110 88 SLALNCPIPVIAAMQGHAIGGGLVLGLYADI--VVLSRESVYTA 129 (249)
T ss_pred HHHHcCCCCEEEEecCceechHHHHHHhCCE--EEEeCCCEecC
Confidence 3455566777777777777777777777765 57777766653
No 88
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=95.37 E-value=0.2 Score=49.99 Aligned_cols=46 Identities=15% Similarity=0.132 Sum_probs=31.2
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
.+...+.++.+-+.|.|...|.-++++++- |++.+++++.+.....
T Consensus 92 ~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~ 137 (259)
T TIGR01929 92 QIRTCPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKV 137 (259)
T ss_pred HHHhCCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCccccc
Confidence 345556677777778887777777777765 5777777776544443
No 89
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=95.36 E-value=0.13 Score=51.87 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=26.3
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+
T Consensus 104 ~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~ 144 (276)
T PRK05864 104 ALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRA 144 (276)
T ss_pred HHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecC
Confidence 344556667777777777777777777664 56666666543
No 90
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=95.36 E-value=0.21 Score=49.79 Aligned_cols=43 Identities=9% Similarity=-0.053 Sum_probs=28.3
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
..+.+.+.+|.+.+.|.|...|.-++++++- |++.+++++...
T Consensus 89 ~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~p 131 (258)
T PRK09076 89 EALSAFRGVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALP 131 (258)
T ss_pred HHHHhCCCCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCc
Confidence 3445566677777777777777777777765 566677666543
No 91
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=95.32 E-value=0.17 Score=50.29 Aligned_cols=41 Identities=10% Similarity=-0.019 Sum_probs=26.5
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+
T Consensus 95 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~ 135 (260)
T PRK05980 95 RLEAFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAK 135 (260)
T ss_pred HHHhCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecC
Confidence 344556667777777777777777777654 56666666654
No 92
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=95.18 E-value=0.2 Score=50.27 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=28.2
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+
T Consensus 102 l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~ 141 (268)
T PRK07327 102 VINCDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIID 141 (268)
T ss_pred HHcCCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeC
Confidence 44556677777788887777777777765 57777776654
No 93
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=95.15 E-value=0.19 Score=49.93 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=28.9
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
..+...+.++.+.+.|.|...|.-++++++- |++.+++++.....
T Consensus 91 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~va~~~a~f~~pe~ 135 (260)
T PRK05809 91 RKLENLDKPVIAAINGFALGGGCELSMACDI--RIASEKAKFGQPEV 135 (260)
T ss_pred HHHHcCCCCEEEEEcCeeecHHHHHHHhCCE--EEeeCCCEEeCccc
Confidence 3445566677777777777777777777765 56666766654333
No 94
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=95.13 E-value=0.24 Score=49.30 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=30.6
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++..-...
T Consensus 94 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 138 (262)
T PRK05995 94 AIYRCPKPVIARVHGDAYAGGMGLVAACDI--AVAADHAVFCLSEVR 138 (262)
T ss_pred HHHcCCCCEEEEECCEEEhhHHHHHHhCCE--EEeeCCCEEeCcccc
Confidence 345566777777778877777777777765 577777777654433
No 95
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=95.12 E-value=0.2 Score=49.82 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=26.5
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+...+.++.+.+.|.|...|.-++++++- |++.+++++.+
T Consensus 89 l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~ 128 (256)
T TIGR02280 89 LRALPLPVVCAVNGVAAGAGANLALACDI--VLAAESARFIQ 128 (256)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeC
Confidence 44556667777777777777777777665 56767766653
No 96
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=95.12 E-value=0.16 Score=50.39 Aligned_cols=43 Identities=16% Similarity=0.055 Sum_probs=30.7
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
+...+.++.+.+.|.|...|.-++++++- |.+.+++++.+...
T Consensus 91 l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~ 133 (249)
T PRK05870 91 VASCPLPTIAAVNGAAVGAGLNLALAADV--RIAGPKALFDARFQ 133 (249)
T ss_pred HHhCCCCEEEEECCEeEchhHHHHHhCCE--EEEcCCCEEeCccc
Confidence 45566777788888888888777777765 67777777764443
No 97
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=95.05 E-value=0.18 Score=50.77 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=29.7
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+.|.+.+.++.+.+.|.|...|.-|+++++- |++.+++++....
T Consensus 105 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe 148 (275)
T PLN02664 105 TAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKE 148 (275)
T ss_pred HHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHH
Confidence 3455566677777777777777777777765 5777777765433
No 98
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=95.02 E-value=0.24 Score=49.32 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=25.3
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.|+..+.++.+.+.|.|...|.-++++|+- |++.+++++.+
T Consensus 87 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 127 (255)
T PRK08150 87 KIQYGRVPVIAALHGAVVGGGLELASAAHI--RVADESTYFAL 127 (255)
T ss_pred HHHhCCCCEEEEECCEEEcHHHHHHHhCCE--EEEeCCCEEec
Confidence 344556666666666666666666666654 56666666554
No 99
>PLN02600 enoyl-CoA hydratase
Probab=94.97 E-value=0.32 Score=48.31 Aligned_cols=41 Identities=12% Similarity=0.021 Sum_probs=25.4
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+-+.|.|...|.-++++++- |++.+++++..
T Consensus 83 ~l~~~~kPvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~ 123 (251)
T PLN02600 83 SLEALSIPTIAVVEGAALGGGLELALSCDL--RICGEEAVFGL 123 (251)
T ss_pred HHHhCCCCEEEEecCeecchhHHHHHhCCE--EEeeCCCEEeC
Confidence 344455566666666666666666666654 56666666654
No 100
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=94.93 E-value=0.42 Score=47.37 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=24.7
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.|...+.++.+.+.|.|...|.-++++++- |++.+++++-+
T Consensus 89 ~l~~~~kpvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~ 129 (257)
T PRK07658 89 RVEKFSKPVIAAIHGAALGGGLELAMSCHI--RFATESAKLGL 129 (257)
T ss_pred HHHhCCCCEEEEEcCeeeeHHHHHHHhCCE--EEecCCCcccC
Confidence 344555666666666666666666666654 56666665543
No 101
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=94.92 E-value=0.34 Score=48.85 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=27.8
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+.+...+.++.+.+.|.|...|.-++++|+- |++.+++++..
T Consensus 98 ~~l~~~~kPvIAav~G~a~GgG~~lal~cD~--~ia~~~a~f~~ 139 (275)
T PRK09120 98 RRLRWYQKPTIAMVNGWCFGGGFSPLVACDL--AIAADEAQFGL 139 (275)
T ss_pred HHHHhCCCCEEEEEcCEEechhHHHHHhCCE--EEEeCCcEecC
Confidence 3445556677777777777777777777765 56666666654
No 102
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=94.87 E-value=0.47 Score=47.23 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=69.6
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCccccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~ 157 (486)
++.+....+.+.+..++.++..+-|+| .+.|+...+|.-+-. +...... .+ ....+. .
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~~-~~~~~~~-----~~---~~~~~~----~------- 84 (257)
T PRK06495 27 LSRELRDELIAVFDEISERPDVRVVVL--TGAGKVFCAGADLKG-RPDVIKG-----PG---DLRAHN----R------- 84 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCCcccCcCHHh-HhhccCC-----ch---hHHHHH----H-------
Confidence 556667788888877777666555554 455665556655432 1110000 00 000000 0
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCc
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 229 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~ 229 (486)
....+++.+...+.++.+.+.|.|...|.-++++++- |++.+++++.+.....|.
T Consensus 85 ---------------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl 139 (257)
T PRK06495 85 ---------------RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGL 139 (257)
T ss_pred ---------------HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCc
Confidence 0113456677888899999999999999999999986 688888888765554444
No 103
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=94.80 E-value=0.26 Score=49.28 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=27.8
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++..
T Consensus 97 ~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~ 137 (262)
T PRK06144 97 ALEQLRVPTIAAIAGACVGGGAAIAAACDL--RIATPSARFGF 137 (262)
T ss_pred HHHhCCCCEEEEECCeeeehHHHHHHhCCE--EEecCCCEeec
Confidence 344556677777777777777777777765 57777777653
No 104
>PLN02921 naphthoate synthase
Probab=94.78 E-value=0.26 Score=51.33 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=40.9
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
++..++..+.++.+.+.|.|...|..|+++++- |++.+++++.+..+..|
T Consensus 153 l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~G 202 (327)
T PLN02921 153 LQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVG 202 (327)
T ss_pred HHHHHHhCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 455677788999999999999999999999976 78999998876655544
No 105
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=94.75 E-value=0.22 Score=49.58 Aligned_cols=40 Identities=13% Similarity=0.097 Sum_probs=24.9
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+...+.++.+.+.|.|...|.-++++++- |++.+++++..
T Consensus 95 l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~ 134 (262)
T PRK08140 95 LRALPLPVIAAVNGVAAGAGANLALACDI--VLAARSASFIQ 134 (262)
T ss_pred HHhCCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEEec
Confidence 44455666666666666666666666654 56666666543
No 106
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=94.61 E-value=0.23 Score=49.37 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=25.1
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
|+..+.++.+.+.|.|...|.-++++++- |++.+++++..
T Consensus 90 l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~ 129 (257)
T PRK05862 90 VARIRKPVIAAVAGYALGGGCELAMMCDI--IIAADTAKFGQ 129 (257)
T ss_pred HHhCCCCEEEEEccEEeHHHHHHHHHCCE--EEEeCCCEEeC
Confidence 44455666666777777767666666665 46666665553
No 107
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=94.58 E-value=0.26 Score=49.11 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=29.7
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++......
T Consensus 98 ~l~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 142 (266)
T PRK09245 98 ALYNLEVPVIAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVK 142 (266)
T ss_pred HHHcCCCCEEEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccc
Confidence 345566677777777777777777777765 567777766644333
No 108
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=94.57 E-value=0.25 Score=48.98 Aligned_cols=43 Identities=2% Similarity=-0.021 Sum_probs=28.3
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+...
T Consensus 85 l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~ 127 (248)
T PRK06072 85 IRFSDKIYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQ 127 (248)
T ss_pred HHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchh
Confidence 44556667777777777777777777765 57777777654433
No 109
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=94.54 E-value=0.32 Score=48.40 Aligned_cols=44 Identities=20% Similarity=0.117 Sum_probs=33.1
Q ss_pred ccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 183 YVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 183 ~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
..+.++.+.+.|.|...|.-++++++- |++.+++++.......|
T Consensus 92 ~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G 135 (259)
T PRK06494 92 DLDKPIIAAVNGVAMGGGFELALACDL--IVAAENATFALPEPRVG 135 (259)
T ss_pred cCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccC
Confidence 356778888899998888888888876 68888887775544433
No 110
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=94.52 E-value=0.19 Score=49.89 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=41.5
Q ss_pred hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 176 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 176 AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
.++..+...+.++.+.+.|.|...|.-++++++- |++.+++++.......|
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~G 138 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLA 138 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccC
Confidence 4566788889999999999999999999999986 68888888875444333
No 111
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=94.50 E-value=0.26 Score=49.17 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=30.1
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+.++..+.++.+.+.|.|...|.-++++++- |++.+++++.+..
T Consensus 94 ~~l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe 137 (262)
T PRK07468 94 KALNDLPKPLIGRIQGQAFGGGVGLISVCDV--AIAVSGARFGLTE 137 (262)
T ss_pred HHHHcCCCCEEEEECCEEEhHHHHHHHhCCE--EEEeCCCEEeCch
Confidence 4455667777777777777777777777765 5777777665433
No 112
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=94.50 E-value=0.38 Score=47.57 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCcHHHHh
Q psy18232 283 WINGLYVKHTGLSIEKIG 300 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~ 300 (486)
.+++.+|++.|++++++.
T Consensus 166 ~~~a~eA~~~Glv~~vv~ 183 (239)
T PLN02267 166 KLTAEEAVEMGIVDSAHD 183 (239)
T ss_pred cCCHHHHHHCCCcceecC
Confidence 345558999999998875
No 113
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=94.42 E-value=0.33 Score=48.81 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=38.4
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
+++.+...+.++.+-+.|.|...|.-++++++- |++.+++++.+-.+..
T Consensus 99 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~ 147 (273)
T PRK07396 99 LQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDL--TIAADNAIFGQTGPKV 147 (273)
T ss_pred HHHHHHhCCCCEEEEECCEEehHHHHHHHhCCE--EEeeCCcEEecccccc
Confidence 455677788889999999999999888888876 6888888877544443
No 114
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=94.38 E-value=0.37 Score=48.06 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=40.1
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
++..+...+.++.+.+.|.|...|.-++++++- |++.+++++....+..|
T Consensus 95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG 144 (266)
T PRK05981 95 FLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIG 144 (266)
T ss_pred HHHHHHhCCCCEEEEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcC
Confidence 566777888999999999999999988988876 68888888875555443
No 115
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=94.31 E-value=0.26 Score=48.95 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=31.5
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+..+...+.++.+.+.|.|...|.-++++++- |++.+++++..
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~ 133 (255)
T PRK07260 91 SFAIKQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQ 133 (255)
T ss_pred HHHHHcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEec
Confidence 34456667778888888888888888888775 67777777654
No 116
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=94.29 E-value=0.36 Score=48.00 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=25.4
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++..
T Consensus 84 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~ 124 (251)
T TIGR03189 84 AMLDSPVPILVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQ 124 (251)
T ss_pred HHHhCCCCEEEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeC
Confidence 344455666666666666666666666654 56666666554
No 117
>PRK08321 naphthoate synthase; Validated
Probab=94.26 E-value=0.57 Score=48.01 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=25.4
Q ss_pred cccCCCeEEEEecccchhhHHHHhhccccccccc-CCceeee
Q psy18232 182 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL-PNSRIMI 222 (486)
Q Consensus 182 ~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~-Pna~iMI 222 (486)
+..+.++.+.+.|.|...|.-++++|+- |++. +++++.+
T Consensus 132 ~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~ 171 (302)
T PRK08321 132 RFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQ 171 (302)
T ss_pred HcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEEC
Confidence 3445667777777777777777777765 5666 4666654
No 118
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=94.26 E-value=0.34 Score=48.18 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=29.6
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+.+...+.++.+-+.|.|...|.-++++|+- |++.+++++..
T Consensus 95 ~~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~ 136 (260)
T PRK07827 95 RAIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFAL 136 (260)
T ss_pred HHHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeC
Confidence 3455667777778888887777777777764 57777766654
No 119
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=94.21 E-value=0.31 Score=48.74 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=70.4
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCccccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~ 157 (486)
++.+....+.+.|..++.++..+.|+|. +.|....+|.-+-............. .....+. ...
T Consensus 30 l~~~~~~~L~~~l~~~~~d~~vr~vVl~--g~g~~FcaG~Dl~~~~~~~~~~~~~~-----~~~~~~~---~~~------ 93 (272)
T PRK06210 30 WTPVMEAEVYAAMDRAEADPAVRVIVLT--GAGRGFCAGADMGELQTIDPSDGRRD-----TDVRPFV---GNR------ 93 (272)
T ss_pred CCHHHHHHHHHHHHHhccCCCeeEEEEE--CCCCCcccccCHHHHhccCccccccc-----ccchhhh---hhh------
Confidence 5666777888888877766555555544 55666666665544222100000000 0000000 000
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
. ......++.+...+.++.+.+.|.|...|.-++++++- |++.+++++.+..+..|
T Consensus 94 --~-----------~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 149 (272)
T PRK06210 94 --R-----------PDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRG 149 (272)
T ss_pred --h-----------hhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcC
Confidence 0 00112456677888999999999999999999999986 68889988876555433
No 120
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=94.19 E-value=0.46 Score=48.33 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=38.9
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCc
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 229 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~ 229 (486)
++..+++.+.++.+.+.|.|...|.-++++|+- |++.+++++.+-....|.
T Consensus 110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl 160 (288)
T PRK08290 110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGI 160 (288)
T ss_pred HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCc
Confidence 345567788899999999999999999999876 788888887654444343
No 121
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=94.11 E-value=0.76 Score=44.90 Aligned_cols=19 Identities=11% Similarity=-0.018 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|++.|++|+++..
T Consensus 162 ~~~a~eA~~~Glv~~vv~~ 180 (229)
T PRK06213 162 MFDPEEAVAAGFLDEVVPP 180 (229)
T ss_pred ccCHHHHHHCCCceeccCh
Confidence 3455589999999987753
No 122
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=94.01 E-value=0.89 Score=45.31 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=31.4
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++-+...
T Consensus 93 ~l~~~~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~ 136 (260)
T PRK07659 93 TLYTMPKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFI 136 (260)
T ss_pred HHHhCCCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchh
Confidence 445566778888888888888888888765 67777777654443
No 123
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=93.99 E-value=0.5 Score=47.36 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=30.5
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+.+...+.++.+.+.|.|...|.-++++|+- |++.+++++....
T Consensus 103 ~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe 146 (272)
T PRK06142 103 NAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVRE 146 (272)
T ss_pred HHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchh
Confidence 3455566777777888887777777777765 5777777665433
No 124
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=93.95 E-value=0.67 Score=46.50 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=34.6
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
+.++..+.++.+.+.|.|...|.-++++++- |++.+++++.......|
T Consensus 100 ~~i~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~G 147 (269)
T PRK06127 100 AALADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLG 147 (269)
T ss_pred HHHHhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhC
Confidence 3456667788888888888888888888876 67778877775544433
No 125
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=93.89 E-value=0.51 Score=48.06 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=31.5
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+...+.++.+-+.|.|...|.-++++|+- |++.+++++.+....
T Consensus 108 ~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~ 152 (296)
T PRK08260 108 RIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGR 152 (296)
T ss_pred HHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhh
Confidence 445556777778888888888777887775 577777777654443
No 126
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=93.88 E-value=0.4 Score=48.55 Aligned_cols=42 Identities=5% Similarity=-0.072 Sum_probs=30.2
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
.++..+.++.+.+.|.|...|.-++++++- |++.+++++.+.
T Consensus 102 ~l~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~p 143 (278)
T PLN03214 102 RLLRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLN 143 (278)
T ss_pred HHHcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCc
Confidence 345566777888888888888887887765 677777776643
No 127
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=93.78 E-value=0.27 Score=49.26 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=37.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHH----------HHHHHh---hcCCCceEEEeccchhHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLG----------IYDTMQ---YVLPPIATWCVGQACSMAS 143 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~agla----------IyD~I~---~ik~~V~tvv~G~AAS~as 143 (486)
++-..+.+....++..-.++..-||...|++||-....... +.+.+. ..+.|+.++++|.+.|.|+
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~ 123 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAF 123 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHH
Confidence 44455666666666543333567999999999966432221 222222 2335666666665555443
No 128
>PRK08788 enoyl-CoA hydratase; Validated
Probab=93.74 E-value=0.39 Score=49.14 Aligned_cols=36 Identities=6% Similarity=-0.155 Sum_probs=22.9
Q ss_pred CCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 185 LPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 185 ~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
+.++.+-+.|.|...|.-++++++- |++.+++++.+
T Consensus 121 pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~ 156 (287)
T PRK08788 121 GAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGF 156 (287)
T ss_pred CCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeC
Confidence 4456666677777666666666654 56666665553
No 129
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=93.72 E-value=0.52 Score=46.97 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=32.7
Q ss_pred cccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 182 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 182 ~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
+..+.++.+.+.|.|...|.-++++++- |++.+++++......
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~ 139 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAK 139 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccc
Confidence 4456788888899998888888888876 688888877654333
No 130
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=93.65 E-value=0.49 Score=46.96 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=38.6
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
.++..+.++.+.+.|.|...|.-++++++- |++.+++++.......|
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G 133 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRG 133 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcC
Confidence 467788999999999999999999999986 78889988876544433
No 131
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=93.62 E-value=0.82 Score=45.50 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=29.7
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
.+...+.++.+.+.|.|...|.-++++++- |++.+++++.+...
T Consensus 92 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~ 135 (260)
T PRK07657 92 MVEQLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTET 135 (260)
T ss_pred HHHhCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchh
Confidence 445566677777777777777777777765 57777776654433
No 132
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.57 E-value=0.3 Score=51.75 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=30.0
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+...+.+|.+.+.|.|...|.-|+++|+. |++.+++++-...+.
T Consensus 119 ~i~~~pKPVIAAVnG~AiGGGleLALaCDl--rIAse~A~Fg~PE~r 163 (360)
T TIGR03200 119 AILGCDKPVICRVNGMRIGGGQEIGMAADF--TIAQDLANFGQAGPK 163 (360)
T ss_pred HHHhCCCCEEEEECCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhc
Confidence 445556677777777777777777777765 577777776653333
No 133
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=93.56 E-value=0.79 Score=45.50 Aligned_cols=47 Identities=6% Similarity=0.013 Sum_probs=36.6
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
.++.+.+.+.++.+.+.|.|...|.-++++|+- |++.+++++..-..
T Consensus 86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~ 132 (249)
T PRK07938 86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEV 132 (249)
T ss_pred HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccc
Confidence 455667778889999999999988888888876 68888887765433
No 134
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=93.53 E-value=0.14 Score=50.55 Aligned_cols=97 Identities=22% Similarity=0.207 Sum_probs=74.7
Q ss_pred ccCcE--EEEccccCcchHHHHHHHHHhhhhcCCCCCeE-EEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHH
Q psy18232 67 LRERI--ICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH-MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMAS 143 (486)
Q Consensus 67 l~~RI--Ifl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~-L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as 143 (486)
+..|. |.+++++-+..+....+.|. ...+..-++ +.+|||||++...++.-..|+..+-++..-...+++|.-.
T Consensus 72 ~dgr~l~VvVse~~a~~da~sal~~li---r~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCp 148 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDAASALGRLI---RKAGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACP 148 (245)
T ss_pred ccCceeeEEEcCCCCCccHHHHHHHHH---hccCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccch
Confidence 44565 45688887766666666664 233334445 7799999999999999999999887777666668999999
Q ss_pred HHHHcCCCCcccccCCceeEeecCC
Q psy18232 144 LLLAAGEKGMRHSLPNSRIMIHQPS 168 (486)
Q Consensus 144 ~Ia~aGd~~~R~a~~ni~I~INSPG 168 (486)
++.+||-. |++.+...|-+|++.
T Consensus 149 l~fagGvr--Rvve~~ayiGVHq~~ 171 (245)
T COG3904 149 LMFAGGVR--RVVEDFAYIGVHQIT 171 (245)
T ss_pred hhhhccee--eeecccceeeeeecc
Confidence 99999985 899988999999875
No 135
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=93.27 E-value=0.66 Score=46.07 Aligned_cols=39 Identities=13% Similarity=-0.017 Sum_probs=29.9
Q ss_pred ccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 183 YVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 183 ~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
..+.++.+.+.|.|...|.-++++++- |++.+++++..-
T Consensus 89 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~p 127 (254)
T PRK08252 89 PPRKPLIAAVEGYALAGGFELALACDL--IVAARDAKFGLP 127 (254)
T ss_pred cCCCCEEEEECCEEehHHHHHHHhCCE--EEEeCCCEEeCc
Confidence 356778888888888888888888876 677777777643
No 136
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=93.09 E-value=0.77 Score=46.03 Aligned_cols=42 Identities=12% Similarity=0.089 Sum_probs=30.5
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
.++..+.++.+.+.|.|...|.-++++++- |++.+++++.+-
T Consensus 96 ~l~~~~kPvIaaV~G~a~GgG~~lal~~D~--~ia~~~a~f~~p 137 (265)
T PRK05674 96 NLYRLKIPTLAVVQGAAFGGALGLISCCDM--AIGADDAQFCLS 137 (265)
T ss_pred HHHcCCCCEEEEEcCEEEechhhHhhhcCE--EEEeCCCEEeCc
Confidence 455667778888888888888777777765 577777777653
No 137
>PRK08139 enoyl-CoA hydratase; Validated
Probab=93.05 E-value=0.42 Score=47.92 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCc
Q psy18232 176 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGV 229 (486)
Q Consensus 176 AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~ 229 (486)
.+++.++..+.++.+.+.|.|...|.-++++|+- |++.+++++..-....|.
T Consensus 95 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl 146 (266)
T PRK08139 95 RVMQAIVALPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGL 146 (266)
T ss_pred HHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCC
Confidence 3566788899999999999999999999999976 788899888755544443
No 138
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=92.80 E-value=0.54 Score=46.64 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=25.3
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
.+++.+.+|.+-+.|.|...|.-++++++- |.+.+++++.+....
T Consensus 93 ~l~~~~kPvIAav~G~a~GgG~eLal~~D~--ria~~~a~f~~pe~~ 137 (257)
T COG1024 93 ALADLPKPVIAAVNGYALGGGLELALACDI--RIAAEDAKFGLPEVN 137 (257)
T ss_pred HHHhCCCCEEEEEcceEeechhhhhhcCCe--EEecCCcEecCcccc
Confidence 444555555555666666666555555554 466666666544443
No 139
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=92.75 E-value=1.5 Score=44.98 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=38.2
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
+..+...+.++.+-+.|.|...|.-++++|+- |++.+++++.+....
T Consensus 105 ~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~ 151 (298)
T PRK12478 105 FMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSR 151 (298)
T ss_pred HHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccc
Confidence 34566788999999999999999999999976 788899888765444
No 140
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=92.41 E-value=0.39 Score=51.54 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=30.5
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
+..++.++.+.++|.+...|.-|+++|+. |++.+++++.+-...
T Consensus 129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~ 172 (401)
T PLN02157 129 LGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETI 172 (401)
T ss_pred HHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhh
Confidence 44566778888888888888777777765 677777766544333
No 141
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=91.97 E-value=0.53 Score=43.44 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=30.8
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+++.+.||.++++|.++|.+-+++++|++. ++.|.+.+....
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I--~~~p~s~vgsiG 43 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEI--YANPSSSVGSIG 43 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEE--EE-TT-EEE---
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEE--EecCCCEEEEeC
Confidence 356788999999999999999999999886 888888877443
No 142
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=91.93 E-value=1.9 Score=43.97 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=36.3
Q ss_pred hhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeee
Q psy18232 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222 (486)
Q Consensus 177 IyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMI 222 (486)
++..+.+.+.++.+.+.|.|...|.-++++|+- |++.+++++..
T Consensus 119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~ 162 (302)
T PRK08272 119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGY 162 (302)
T ss_pred HHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecC
Confidence 345566788899999999999999999999986 68888887753
No 143
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=91.90 E-value=1.1 Score=51.13 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=38.6
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEE-----eCCCcccch----------------HHHHHHHHhhcCCCceEEEec
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYI-----NSPGGSVTS----------------GLGIYDTMQYVLPPIATWCVG 136 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~I-----NSPGGsv~a----------------glaIyD~I~~ik~~V~tvv~G 136 (486)
++.+....+.+.|..++.++..+.|+|.= =|.|+++.. ...+++.|...++|+...+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 45556667777777666665554444321 122333221 112344555555666666666
Q ss_pred cchhHHHHHHHcCC
Q psy18232 137 QACSMASLLLAAGE 150 (486)
Q Consensus 137 ~AAS~as~Ia~aGd 150 (486)
.|..+|..+++++|
T Consensus 106 ~a~GgG~~LaLacD 119 (699)
T TIGR02440 106 ACLGGGLELALACH 119 (699)
T ss_pred EeecHHHHHHHhCC
Confidence 66666666666666
No 144
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=91.82 E-value=0.86 Score=50.86 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.||++.|++++++..
T Consensus 198 ~i~AeeA~~~GLVd~vv~~ 216 (550)
T PRK08184 198 GVRGKRAVDWRLVDEVVKP 216 (550)
T ss_pred cccHHHHHHcCCccEeeCH
Confidence 3455589999999988764
No 145
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=91.75 E-value=0.5 Score=49.36 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=28.6
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCC
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 225 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP 225 (486)
.+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+-..
T Consensus 95 ~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~ 138 (342)
T PRK05617 95 LIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPET 138 (342)
T ss_pred HHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCcc
Confidence 344556677777777777777777777764 56777776654433
No 146
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=90.96 E-value=0.64 Score=50.06 Aligned_cols=122 Identities=11% Similarity=0.014 Sum_probs=72.2
Q ss_pred cEEEEccc-----cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHH
Q psy18232 70 RIICVMGP-----IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASL 144 (486)
Q Consensus 70 RIIfl~G~-----I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~ 144 (486)
++|.+.-| ++.+....+...|..++.++..+-|.| .+.|...-+|.-|-...+.... +
T Consensus 53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL--~G~GkaFcAGgDl~~l~~~~~~-------~-------- 115 (407)
T PLN02851 53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLM--KGSGRAFCSGADVVSLYHLINE-------G-------- 115 (407)
T ss_pred EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCccCCcCHHHHHhhccc-------c--------
Confidence 56777766 666778888889988888776654444 4555444444333221111000 0
Q ss_pred HHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 145 LLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 145 Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+. +. ..........+...+..++.++.+.++|.+...|.-|+++|+. |++.+++++.+-.
T Consensus 116 -----~~------~~-------~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE 175 (407)
T PLN02851 116 -----NV------EE-------CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPE 175 (407)
T ss_pred -----ch------HH-------HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecch
Confidence 00 00 0000011123444567789999999999999999999998875 6777777776544
Q ss_pred CCCC
Q psy18232 225 PSGG 228 (486)
Q Consensus 225 P~gg 228 (486)
..-|
T Consensus 176 ~~iG 179 (407)
T PLN02851 176 VQMG 179 (407)
T ss_pred hccC
Confidence 4433
No 147
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=90.87 E-value=0.49 Score=48.87 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=44.4
Q ss_pred CCCCeEEEEeCCCccc-------chHHHHHH---HHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecC
Q psy18232 98 SKKPIHMYINSPGGSV-------TSGLGIYD---TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQP 167 (486)
Q Consensus 98 ~~k~I~L~INSPGGsv-------~aglaIyD---~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSP 167 (486)
=.-||..+|++||-.- --+.+|-. +|...+.|+..+++|.--|+|++....||++ ++.+|....+=||
T Consensus 149 F~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V--~mle~s~ySVisP 226 (317)
T COG0825 149 FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRV--LMLENSTYSVISP 226 (317)
T ss_pred hCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHH--HHHHhceeeecCh
Confidence 3569999999999442 12345543 3445667888888887677777666666655 5555555555555
Q ss_pred CC
Q psy18232 168 SG 169 (486)
Q Consensus 168 GG 169 (486)
.|
T Consensus 227 EG 228 (317)
T COG0825 227 EG 228 (317)
T ss_pred hh
Confidence 44
No 148
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=90.69 E-value=0.72 Score=48.94 Aligned_cols=49 Identities=10% Similarity=-0.019 Sum_probs=39.0
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
...+...+.++.+.+.|.|...|.-++++|+- |++.+++++.+-....|
T Consensus 98 ~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iG 146 (379)
T PLN02874 98 CYHIHTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVG 146 (379)
T ss_pred HHHHHhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccC
Confidence 34567789999999999999999999999976 78888888775544444
No 149
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.62 E-value=1.4 Score=50.65 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=27.2
Q ss_pred cccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 180 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 180 ~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
.+...+.++.+-+.|.|...|.-++++|+- |++.+++++.+-
T Consensus 97 ~i~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~p 138 (715)
T PRK11730 97 RLEDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLP 138 (715)
T ss_pred HHHcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCc
Confidence 344556667777777777777777777665 566666666543
No 150
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=90.28 E-value=1.4 Score=46.88 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=36.8
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPS 226 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~ 226 (486)
..+..++.++.+.++|.+...|.-|+++|+. |++.+++++-+-...
T Consensus 99 ~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~ 144 (381)
T PLN02988 99 YVMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETA 144 (381)
T ss_pred HHHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhh
Confidence 3567789999999999999999999999876 688888877644333
No 151
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=90.03 E-value=0.51 Score=46.98 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=41.6
Q ss_pred hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCC
Q psy18232 176 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 228 (486)
Q Consensus 176 AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg 228 (486)
.++..+...+.++.+-+.|.|...|..++++++- |++.+++++.+.....|
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G 137 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDI--VIADETAPFSLSELLFG 137 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCE--EEEcCCCEEeCchhhhc
Confidence 4566777889999999999999999999999985 78889988876544433
No 152
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.71 E-value=2.6 Score=48.37 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=30.1
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecC
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHq 224 (486)
+.++..+.++.+-+.|.|...|.-++++|+. |++.+++++.+-.
T Consensus 96 ~~i~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPE 139 (714)
T TIGR02437 96 NKLEDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPE 139 (714)
T ss_pred HHHHhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecch
Confidence 4455667777777777777777777777765 6777777665443
No 153
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.45 E-value=3.4 Score=47.41 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|++.|++++++..
T Consensus 173 ~i~a~eA~~~GLv~~vv~~ 191 (708)
T PRK11154 173 QLRAKQALKLGLVDDVVPH 191 (708)
T ss_pred cCCHHHHHHCCCCcEecCh
Confidence 3555689999999987764
No 154
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=89.41 E-value=2.1 Score=42.66 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=33.4
Q ss_pred ccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 183 YVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 183 ~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
..+.++.+-+.|.|...|.-++++|+- |++.+++++..-
T Consensus 91 ~~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~p 129 (254)
T PRK08259 91 RLSKPVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVF 129 (254)
T ss_pred cCCCCEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCc
Confidence 467889999999999999999999986 789999887643
No 155
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=0.58 Score=50.67 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=52.5
Q ss_pred CceeEeecCCCccccchhhhccccccCCCeEEEEe---cccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHH
Q psy18232 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV---GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATD 235 (486)
Q Consensus 159 ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vd---GlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~d 235 (486)
-+-+.+|.|||.+.....|-.++.+.+-+|+.++- +.|+|+|++|++++ |--.| .| +..-|.+..
T Consensus 59 ~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~---------hiaaM--AP-gT~iGaa~P 126 (436)
T COG1030 59 AVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMAT---------HIAAM--AP-GTNIGAATP 126 (436)
T ss_pred EEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhc---------Chhhh--CC-CCcccccce
Confidence 45677899999999999999999999999877763 36999999999997 33333 23 223477766
Q ss_pred HHHH
Q psy18232 236 IQIQ 239 (486)
Q Consensus 236 I~~~ 239 (486)
+...
T Consensus 127 i~~~ 130 (436)
T COG1030 127 IAGG 130 (436)
T ss_pred ecCC
Confidence 6544
No 156
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=88.27 E-value=3.3 Score=45.85 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=44.5
Q ss_pred cccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcc----------cchHHHHHHHHhhcCCCceEEEeccchhHHHHH
Q psy18232 76 GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGS----------VTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145 (486)
Q Consensus 76 G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGs----------v~aglaIyD~I~~ik~~V~tvv~G~AAS~as~I 145 (486)
|.++...+.++.+.+...+. ..-||+..+||||-. +..+-.+.+.+.....|..+++.|-++++ +++
T Consensus 329 G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gg-a~~ 405 (512)
T TIGR01117 329 GCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGG-AYL 405 (512)
T ss_pred CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchH-HHH
Confidence 45555567777766664444 357999999999952 33444455555555677777777766554 444
Q ss_pred HHcC
Q psy18232 146 LAAG 149 (486)
Q Consensus 146 a~aG 149 (486)
+++|
T Consensus 406 am~~ 409 (512)
T TIGR01117 406 AMCS 409 (512)
T ss_pred Hhcc
Confidence 4443
No 157
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=87.41 E-value=2.7 Score=47.00 Aligned_cols=19 Identities=21% Similarity=0.069 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|+++|++++++..
T Consensus 194 ~i~A~eA~~~GLV~~vv~~ 212 (546)
T TIGR03222 194 GVRGKRAKEWRLVDEVVKP 212 (546)
T ss_pred CccHHHHHHcCCceEEeCh
Confidence 4556689999999987754
No 158
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=86.40 E-value=7.9 Score=43.36 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHhhcCCCceEEE-eccchhHH-HHHHHcCC
Q psy18232 119 IYDTMQYVLPPIATWC-VGQACSMA-SLLLAAGE 150 (486)
Q Consensus 119 IyD~I~~ik~~V~tvv-~G~AAS~a-s~Ia~aGd 150 (486)
+++.|...++|+...+ -|.|..+| .-+++++|
T Consensus 357 ~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD 390 (546)
T TIGR03222 357 TLARLDVSSRSLFALIEPGSCFAGTLAELAFAAD 390 (546)
T ss_pred HHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCc
Confidence 4456777778888888 68888888 88888888
No 159
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.93 E-value=3.8 Score=47.27 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=38.6
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHH----------------------HHHHHHhhcCCCceEEEe
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGL----------------------GIYDTMQYVLPPIATWCV 135 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~agl----------------------aIyD~I~~ik~~V~tvv~ 135 (486)
++.+....+.+.+..++.++..+.++ .+...|+...+|. .+++.|...+.|+...+-
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vV-vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAV-LISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEE-EEECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 44456677777777776655444332 2344443333332 234445555555555555
Q ss_pred ccchhHHHHHHHcCC
Q psy18232 136 GQACSMASLLLAAGE 150 (486)
Q Consensus 136 G~AAS~as~Ia~aGd 150 (486)
|.|..+|..+++++|
T Consensus 117 G~a~GgG~eLALacD 131 (737)
T TIGR02441 117 GSCLGGGLELALACH 131 (737)
T ss_pred CEeecHHHHHHHhCC
Confidence 655556666666555
No 160
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=84.76 E-value=3.8 Score=42.03 Aligned_cols=93 Identities=10% Similarity=0.113 Sum_probs=63.9
Q ss_pred EEccccCcchHHHHHHHHHhhhhcC---CCCCeEEEEeCCCcccchHH-------HHHHHHhhcC--CCceEEEecc--c
Q psy18232 73 CVMGPIDDSLSSVVVAQLLFLQSES---SKKPIHMYINSPGGSVTSGL-------GIYDTMQYVL--PPIATWCVGQ--A 138 (486)
Q Consensus 73 fl~G~I~d~~a~~ii~qLl~L~~ed---~~k~I~L~INSPGGsv~agl-------aIyD~I~~ik--~~V~tvv~G~--A 138 (486)
|.+|.+......++.+.+.....++ ..-|+++.+.|.|+....+. .++..+...+ .|+.+++.|- +
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 4567777667777777666544422 23489999999998876543 2344444444 6888889996 6
Q ss_pred hhHHHHHHHcCCCCcccccCCceeEeecC
Q psy18232 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQP 167 (486)
Q Consensus 139 AS~as~Ia~aGd~~~R~a~~ni~I~INSP 167 (486)
+.+++++++.+|-+ ++.++..+.++.|
T Consensus 150 ~GG~a~~a~l~D~v--im~~~a~i~~aGP 176 (274)
T TIGR03133 150 FGGMGIAAGLCSYL--IMTEEGRLGLSGP 176 (274)
T ss_pred chHHHHHHhcCCEE--EEeCCcEEeccCH
Confidence 78888888889864 6666666666666
No 161
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=82.48 E-value=9.3 Score=42.83 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=22.8
Q ss_pred HHHHhhcCCCceEEEe-ccchhHH-HHHHHcCC
Q psy18232 120 YDTMQYVLPPIATWCV-GQACSMA-SLLLAAGE 150 (486)
Q Consensus 120 yD~I~~ik~~V~tvv~-G~AAS~a-s~Ia~aGd 150 (486)
+..|...++||...+- |.|..+| .-+++++|
T Consensus 362 ~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD 394 (550)
T PRK08184 362 LKRLDVTSRSLFALIEPGSCFAGTLAELALAAD 394 (550)
T ss_pred HHHHHhCCCCEEEEECCCceehhHHHHHHHHCC
Confidence 3455666678887775 8888777 88888888
No 162
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=82.10 E-value=18 Score=36.48 Aligned_cols=90 Identities=19% Similarity=0.110 Sum_probs=57.3
Q ss_pred hccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18232 178 YDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKH 257 (486)
Q Consensus 178 yD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~gg~~G~a~dI~~~Aeel~~~r~~I~~iYA~~ 257 (486)
|+.-+.-+++|...+-|.|.|. +||+-+-....-+++|+ .|+|-.. . +..++-
T Consensus 98 ~a~AR~~GHpvI~Lv~G~A~SG-aFLA~GlqA~rl~AL~g--a~i~vM~--------------------~----~s~ARV 150 (234)
T PF06833_consen 98 YALARLAGHPVIGLVYGKAMSG-AFLAHGLQANRLIALPG--AMIHVMG--------------------K----PSAARV 150 (234)
T ss_pred HHHHHHcCCCeEEEEecccccH-HHHHHHHHhcchhcCCC--CeeecCC--------------------h----HHhHHH
Confidence 4555667778888888888884 46554443333367773 4444321 1 123677
Q ss_pred hCCCHHHHHhhhccccccChhhHHHHHHHHHHHHhCCcHHHHhh
Q psy18232 258 TGLSIEKIGKSTVCFYVLHDPYICFWINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 258 TG~s~E~I~~~m~rd~wmsa~e~~e~L~~~eAk~~GLiDEiI~~ 301 (486)
|.+|.|++++..+.-.=|..+ -+-=.+.|.+++.+..
T Consensus 151 Tk~~ve~Le~la~s~PvfA~g-------i~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 151 TKRPVEELEELAKSVPVFAPG-------IENYAKLGALDELWDG 187 (234)
T ss_pred hhcCHHHHHHHhhcCCCcCCC-------HHHHHHhccHHHHhcc
Confidence 899999999998876556555 1122468888887764
No 163
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=80.64 E-value=5.4 Score=43.82 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=48.9
Q ss_pred cccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------cccchHHHHHHHHhhcCCCceEEEeccchhHHHHH
Q psy18232 76 GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPG----------GSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145 (486)
Q Consensus 76 G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPG----------Gsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~I 145 (486)
|.++.+.+.+..+-+...+.. .-||...+|+|| |.+.++-.+.+.+...+.|+.++++|.+.++ +++
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gg-a~~ 384 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGG-AYY 384 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHH-HHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCc-chh
Confidence 445556777777766666654 359999999999 4466678888899999999999999966554 445
Q ss_pred HHcCC
Q psy18232 146 LAAGE 150 (486)
Q Consensus 146 a~aGd 150 (486)
+++|.
T Consensus 385 am~~~ 389 (493)
T PF01039_consen 385 AMCGR 389 (493)
T ss_dssp HTTGG
T ss_pred hhccc
Confidence 55554
No 164
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=80.44 E-value=6.6 Score=44.22 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=45.5
Q ss_pred cccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcc----------cchHHHHHHHHhhcCCCceEEEeccchhHHHHH
Q psy18232 76 GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGS----------VTSGLGIYDTMQYVLPPIATWCVGQACSMASLL 145 (486)
Q Consensus 76 G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGs----------v~aglaIyD~I~~ik~~V~tvv~G~AAS~as~I 145 (486)
|.++.+.+.+..+-+...+.. .-|+...+|+||-. +..+-.+...+...+.|+.++++|.+..+| ++
T Consensus 380 g~l~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g-~~ 456 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQR--GIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAG-NY 456 (569)
T ss_pred CccCHHHHHHHHHHHHHHHhc--CCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHH-HH
Confidence 345555666666555544443 46999999999954 344445566666677888888888555544 44
Q ss_pred HHcCC
Q psy18232 146 LAAGE 150 (486)
Q Consensus 146 a~aGd 150 (486)
+++|.
T Consensus 457 aM~g~ 461 (569)
T PLN02820 457 GMCGR 461 (569)
T ss_pred HhcCc
Confidence 55444
No 165
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=79.81 E-value=6.8 Score=40.77 Aligned_cols=93 Identities=10% Similarity=0.112 Sum_probs=63.3
Q ss_pred EEccccCcchHHHHHHHHHhhhhcC---CCCCeEEEEeCCCcccchHH-------HHHHHHhhcC--CCceEEEecc--c
Q psy18232 73 CVMGPIDDSLSSVVVAQLLFLQSES---SKKPIHMYINSPGGSVTSGL-------GIYDTMQYVL--PPIATWCVGQ--A 138 (486)
Q Consensus 73 fl~G~I~d~~a~~ii~qLl~L~~ed---~~k~I~L~INSPGGsv~agl-------aIyD~I~~ik--~~V~tvv~G~--A 138 (486)
|.+|.+......++.+.+....... ...|+++.+.|.|+....+. .++..+...+ .|+.+++.|- +
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~gc 158 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGC 158 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 4566666667777776665443332 13699999999998875433 3444444444 6888888897 7
Q ss_pred hhHHHHHHHcCCCCcccccCCceeEeecC
Q psy18232 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQP 167 (486)
Q Consensus 139 AS~as~Ia~aGd~~~R~a~~ni~I~INSP 167 (486)
+.++++.+..+|-+ ++.++.++.++.|
T Consensus 159 ~GG~a~~a~l~D~i--Im~~~a~iglaGP 185 (301)
T PRK07189 159 FGGMGIAAALCSYL--IVSEEGRLGLSGP 185 (301)
T ss_pred cHHHHHHHhcCCEE--EEECCcEEeccCH
Confidence 88888888888864 6666666666666
No 166
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=77.56 E-value=2.4 Score=44.44 Aligned_cols=45 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred ccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 181 MQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 181 L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
+...+-++.+.+.|-++|.|++.++.++. .+|.|++.+.+-.|.+
T Consensus 188 ~a~~~VP~IsVViGeggsGGAlal~~aD~--V~m~e~a~~sVisPEg 232 (322)
T CHL00198 188 MFSFEVPIICTIIGEGGSGGALGIGIGDS--IMMLEYAVYTVATPEA 232 (322)
T ss_pred HHcCCCCEEEEEeCcccHHHHHhhhcCCe--EEEeCCeEEEecCHHH
Confidence 34567788899999999999987777765 4899999998877754
No 167
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.88 E-value=5.9 Score=45.72 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=35.4
Q ss_pred cccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeecCCCC
Q psy18232 182 QYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 227 (486)
Q Consensus 182 ~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIHqP~g 227 (486)
....-++.+++.|-++|.|++.++.++. .+|.|++.+.+-.|.+
T Consensus 277 asl~VP~ISVViGeggSGGAlA~g~aD~--VlMle~A~~sVisPEg 320 (762)
T PLN03229 277 FGLKVPIVSIVIGEGGSGGALAIGCANK--LLMLENAVFYVASPEA 320 (762)
T ss_pred hCCCCCEEEEEeCCcchHHHHHhhcCCE--EEEecCCeEEecCHHH
Confidence 3566788999999999999998888776 4899998887666653
No 168
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=60.75 E-value=32 Score=37.09 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=61.9
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCC
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~n 159 (486)
...+.+-..+..|+.+. .+.++|-+ |-|||...+++.+-+..... .++... .+ |...++
T Consensus 216 ~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~-g~iv~~-~~-----------------r~g~~~ 275 (406)
T COG0793 216 GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPS-GPIVST-RG-----------------RNGKVN 275 (406)
T ss_pred chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCC-CcEEEE-ec-----------------CCCcee
Confidence 45667777887888876 89999999 99999999999998887754 222222 12 111111
Q ss_pred ceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhcc
Q psy18232 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 208 (486)
Q Consensus 160 i~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~ 208 (486)
. .++..+. .....++.+.+.+-+||++-+++.|=.
T Consensus 276 ~---~~~~~~~-----------~~~~~PlvvLvn~~SASAsEI~agalq 310 (406)
T COG0793 276 V---YFSASGE-----------ALYDGPLVVLVNEGSASASEIFAGALQ 310 (406)
T ss_pred e---ccccccc-----------cCCCCCEEEEECCCCccHHHHHHHHHH
Confidence 1 0111110 024688999999999999887766644
No 169
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=59.87 E-value=29 Score=38.84 Aligned_cols=73 Identities=15% Similarity=0.228 Sum_probs=47.8
Q ss_pred ccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCC----------cccchHHHHHHHHhhcCCCceEEEeccchhHHHH
Q psy18232 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPG----------GSVTSGLGIYDTMQYVLPPIATWCVGQACSMASL 144 (486)
Q Consensus 75 ~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPG----------Gsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~ 144 (486)
+|.|+.+.+.+-.+-+.+-+.. .=||.+..|.|| |-+--|-.+...+...+.|..|++++.+ .+|++
T Consensus 337 ~G~l~~~sa~KaArFI~~cd~~--~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rka-yGga~ 413 (526)
T COG4799 337 GGVLDIDSADKAARFIRLCDAF--NIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKA-YGGAY 413 (526)
T ss_pred ccccchHHHHHHHHHHHhhhcc--CCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEeccc-cccee
Confidence 4566666666655555444443 459999999999 3355566777788888888888888733 33444
Q ss_pred HHHcCC
Q psy18232 145 LLAAGE 150 (486)
Q Consensus 145 Ia~aGd 150 (486)
.+|+|.
T Consensus 414 ~~M~~~ 419 (526)
T COG4799 414 YVMGGK 419 (526)
T ss_pred eeecCc
Confidence 444444
No 170
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=59.42 E-value=15 Score=34.79 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=26.6
Q ss_pred EEEccccCcchHHHH---HHHHHhhhhcCCCCCeEEEEeCCCcccc
Q psy18232 72 ICVMGPIDDSLSSVV---VAQLLFLQSESSKKPIHMYINSPGGSVT 114 (486)
Q Consensus 72 Ifl~G~I~d~~a~~i---i~qLl~L~~ed~~k~I~L~INSPGGsv~ 114 (486)
+=+.|.|...-.+.+ +..++.... +.+.+.+++-||||-|-
T Consensus 103 ldF~Gdi~A~~v~~LReeisail~~a~--~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 103 LDFKGDIKASEVESLREEISAILSVAT--PEDEVLVRLESPGGMVH 146 (155)
T ss_pred EecCCCccHHHHHHHHHHHHHHHHhCC--CCCeEEEEEecCCceee
Confidence 446888887544332 333443332 34689999999999975
No 171
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=59.07 E-value=1e+02 Score=29.51 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=59.7
Q ss_pred cchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccC
Q psy18232 80 DSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLP 158 (486)
Q Consensus 80 d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ 158 (486)
+...+.+.+.+..++. +.+.+.|-+ |.|||+...+..+.+.+..-+......... ..
T Consensus 72 ~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~--------------------~~ 129 (224)
T cd06567 72 ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRR--------------------GG 129 (224)
T ss_pred cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecC--------------------CC
Confidence 4455566666665555 678999998 889999988888888876533333222111 00
Q ss_pred CceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccc
Q psy18232 159 NSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209 (486)
Q Consensus 159 ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~ 209 (486)
+-......++. .....++.+.+++.++|+|-+++++=..
T Consensus 130 ~~~~~~~~~~~------------~~~~~pv~vL~~~~taSaaE~~a~~lk~ 168 (224)
T cd06567 130 NETEYVAPGGG------------SLYDGPLVVLVNEGSASASEIFAGALQD 168 (224)
T ss_pred ceeEEecCCCC------------cccCCCEEEEECCCCccHHHHHHHHHHh
Confidence 01111222211 2356789999999999999887766533
No 172
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=56.17 E-value=54 Score=34.02 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=46.4
Q ss_pred ccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH-------HHHH---hhcCCCceEEEeccchhHHHH
Q psy18232 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI-------YDTM---QYVLPPIATWCVGQACSMASL 144 (486)
Q Consensus 75 ~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI-------yD~I---~~ik~~V~tvv~G~AAS~as~ 144 (486)
+|.++...++++.+.+...... .-|++..+.|+|....+|..- ...+ .....|..+++.|-+..++++
T Consensus 134 gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aa 211 (292)
T PRK05654 134 GGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSA 211 (292)
T ss_pred cCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHH
Confidence 5555556777887777655444 469999999999887666532 2222 223468888888855555444
Q ss_pred H-HHcCC
Q psy18232 145 L-LAAGE 150 (486)
Q Consensus 145 I-a~aGd 150 (486)
. ++.||
T Consensus 212 s~a~~~D 218 (292)
T PRK05654 212 SFAMLGD 218 (292)
T ss_pred HHHHcCC
Confidence 3 44465
No 173
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=52.51 E-value=56 Score=33.83 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=45.4
Q ss_pred ccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHH-------H---HhhcCCCceEEEeccchhHHHH
Q psy18232 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD-------T---MQYVLPPIATWCVGQACSMASL 144 (486)
Q Consensus 75 ~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD-------~---I~~ik~~V~tvv~G~AAS~as~ 144 (486)
+|.++...++++.+.+...... .-|++..++|+|....++..... . +.....|..+++.|-+..++++
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aa 210 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSA 210 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHH
Confidence 3444445677777766654443 45999999999988766653221 2 2222468888888855555444
Q ss_pred H-HHcCC
Q psy18232 145 L-LAAGE 150 (486)
Q Consensus 145 I-a~aGd 150 (486)
. ++.||
T Consensus 211 s~a~~~D 217 (285)
T TIGR00515 211 SFAMLGD 217 (285)
T ss_pred HHHhCCC
Confidence 3 34555
No 174
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=52.50 E-value=61 Score=36.68 Aligned_cols=91 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred EccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccc---h------H-HHHHHH-Hhhc--CCCceEEEeccchh
Q psy18232 74 VMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT---S------G-LGIYDT-MQYV--LPPIATWCVGQACS 140 (486)
Q Consensus 74 l~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~---a------g-laIyD~-I~~i--k~~V~tvv~G~AAS 140 (486)
.+|.++.....++.+.+.... + ..-|++..++|+|+... . + -.|+.. .+.. ..|..++++|-+++
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~-~-~~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAA-Q-CRLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHH-H-cCCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 345555556777776655433 3 24699999999998762 1 1 124433 3333 36888999998888
Q ss_pred HHHHHHHcCCCCcccccCCceeEeecC
Q psy18232 141 MASLLLAAGEKGMRHSLPNSRIMIHQP 167 (486)
Q Consensus 141 ~as~Ia~aGd~~~R~a~~ni~I~INSP 167 (486)
+|+++....|.+ =++.++..+.+..|
T Consensus 219 GgAy~~a~~D~v-im~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADES-VIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCce-EEecCCcEEEecCH
Confidence 888887766643 02334566666666
No 175
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=50.64 E-value=1.9e+02 Score=28.18 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=65.5
Q ss_pred chHhhhccCcEEEEc-cccCcchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccc
Q psy18232 61 DIYSRLLRERIICVM-GPIDDSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQA 138 (486)
Q Consensus 61 Di~s~Ll~~RIIfl~-G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~A 138 (486)
|-|++++.. |-|+. ........+.+.+.|..+...+ .+.+.|-+ +.+||++..+..|.+.+-. +.++. ....
T Consensus 41 ~~~~~~~~~-igYi~i~sf~~~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~-~~~~~-~~~~-- 114 (211)
T cd07560 41 DPYSRYLTP-IGYIRITSFSENTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLP-GGPIV-STKG-- 114 (211)
T ss_pred CCcceeeCc-eEEEEEcccCchhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcC-CCeEE-EEEe--
Confidence 444455444 43321 1234455667777776666553 78899988 7789999888888776664 22221 1111
Q ss_pred hhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccc
Q psy18232 139 CSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209 (486)
Q Consensus 139 AS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~ 209 (486)
. .|. ... ..++. -+....++.+.+++.++|+|-+++++=..
T Consensus 115 ~--------~g~---------~~~-~~~~~------------~~~~~~pvvVLvn~~TaSaaE~~a~~lk~ 155 (211)
T cd07560 115 R--------NGK---------REA-YASDD------------GGLYDGPLVVLVNGGSASASEIVAGALQD 155 (211)
T ss_pred c--------CCc---------eEE-EecCC------------CccCCCCEEEEeCCCcccHHHHHHHHHhh
Confidence 0 010 000 11111 12457899999999999999887776533
No 176
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=47.58 E-value=65 Score=32.02 Aligned_cols=43 Identities=7% Similarity=0.006 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCcee
Q psy18232 118 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 162 (486)
Q Consensus 118 aIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I 162 (486)
.++..|...+.|+...+-|.|..+|..+++++| .|++.+++.+
T Consensus 87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f 129 (255)
T PRK07112 87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPF 129 (255)
T ss_pred HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEE
Confidence 356677778899999999999999999999999 4666665543
No 177
>PRK11186 carboxy-terminal protease; Provisional
Probab=45.63 E-value=84 Score=36.34 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=59.1
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCC
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN 159 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~n 159 (486)
..++.+.++|..+..+ +.+.++|-+ |.|||++..+..|.+.+-.- .++..+..+ .|.
T Consensus 366 ~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~-g~vv~~~~~-----------~g~--------- 423 (667)
T PRK11186 366 GLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPS-GPVVQVRDN-----------NGR--------- 423 (667)
T ss_pred chHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcC-CceEEEecC-----------CCc---------
Confidence 3567777777777665 688999999 88999999999998875532 233222211 010
Q ss_pred ceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhc
Q psy18232 160 SRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 207 (486)
Q Consensus 160 i~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG 207 (486)
.... ..+.+ -.....++.+.+++.+||++-++++|=
T Consensus 424 ~~~~-~~~~~-----------~~~~~gPlvVLVN~~SASASEIfA~al 459 (667)
T PRK11186 424 VRVD-SDTDG-----------VVYYKGPLVVLVDRYSASASEIFAAAM 459 (667)
T ss_pred eecc-ccCCc-----------ccccCCCEEEEeCCCCccHHHHHHHHH
Confidence 0000 01111 112356899999999999988777663
No 178
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=44.19 E-value=1.8e+02 Score=29.21 Aligned_cols=46 Identities=9% Similarity=0.095 Sum_probs=37.0
Q ss_pred CcchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhh
Q psy18232 79 DDSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQY 125 (486)
Q Consensus 79 ~d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ 125 (486)
.....+.+.+.+..++++ +.+.++|-+ +.|||.+..+..|.+.+..
T Consensus 75 ~~~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 75 TSGYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred ccchHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 334667888888877765 578899998 8899999999999888875
No 179
>smart00245 TSPc tail specific protease. tail specific protease
Probab=40.67 E-value=2.4e+02 Score=26.77 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=59.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccc
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHS 156 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a 156 (486)
.+....+.+.+.+..+... +.+.+.|-+ +.+||...++..+.+.+..-. ....... . |
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~--~~~~~~~-------------~---~-- 96 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKG--VIVYTIY-------------R---R-- 96 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCC--cEEEEEe-------------c---C--
Confidence 3344556666677666655 578899988 669999988888877765322 2222211 0 0
Q ss_pred cCCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccc
Q psy18232 157 LPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209 (486)
Q Consensus 157 ~~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~ 209 (486)
..-...+.+.. -.....++.+.+++.++|+|-+++++=..
T Consensus 97 -~~~~~~~~~~~------------~~~~~~pv~vL~~~~TaSaaE~~a~~lk~ 136 (192)
T smart00245 97 -TGELETYPANL------------GRKYSKPLVVLVNEGTASASEIFAGALKD 136 (192)
T ss_pred -CCceEEEecCC------------CcccCCCEEEEECCCCeeHHHHHHHHHhh
Confidence 00011111111 12236899999999999999887776533
No 180
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=39.62 E-value=1.5e+02 Score=31.64 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=39.7
Q ss_pred cEEEEc-cccCcchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhh
Q psy18232 70 RIICVM-GPIDDSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQY 125 (486)
Q Consensus 70 RIIfl~-G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ 125 (486)
+|-|+. ...+....+.+.+.|..++.. +.+.++|-+ |.|||.+..+..|.+.+..
T Consensus 195 ~IgYi~i~~F~~~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~ 251 (389)
T PLN00049 195 KIGYIKLTTFNQNASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLD 251 (389)
T ss_pred CEEEEEeccccchhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcC
Confidence 554542 223445677788888777665 478899998 8899999988888887764
No 181
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=35.41 E-value=31 Score=33.74 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEe
Q psy18232 115 SGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164 (486)
Q Consensus 115 aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~I 164 (486)
....++..+...+.|+...+-|.|...|..+++++| .|++.++..+..
T Consensus 78 ~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D--~~ia~~~a~f~~ 125 (245)
T PF00378_consen 78 RFQELLSRLANFPKPTIAAVNGHAVGGGFELALACD--FRIAAEDAKFGF 125 (245)
T ss_dssp HHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSS--EEEEETTTEEET
T ss_pred hhccccccchhhhhheeecccccccccccccccccc--eEEeecccceee
Confidence 355789999999999999999999999999999999 578888887443
No 182
>KOG1679|consensus
Probab=35.36 E-value=24 Score=35.61 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.||+..|++...+..
T Consensus 194 vl~g~eA~~lGlVnhvv~q 212 (291)
T KOG1679|consen 194 VLNGAEAAKLGLVNHVVEQ 212 (291)
T ss_pred eccchhHHhcchHHHHHhc
Confidence 6778899999999988876
No 183
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=34.80 E-value=2.7e+02 Score=27.36 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=48.3
Q ss_pred CCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEeecCCCccccchhhh
Q psy18232 100 KPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLGIY 178 (486)
Q Consensus 100 k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~INSPGG~v~~glAIy 178 (486)
+.+.|-+ +.+||+...+..+...+..-+.++...... . -.+.. .....-....|++
T Consensus 96 ~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~---~------~~~~~-----~~~~~~~~~~~~~--------- 152 (250)
T cd07563 96 DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIY---K------RPGNT-----TTELWTLPVVPGG--------- 152 (250)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEE---E------CCCCC-----CcccceeeecCCC---------
Confidence 7888888 778999988888888776433343333221 0 00000 0000001122221
Q ss_pred ccccccCCCeEEEEecccchhhHHHHhhcc
Q psy18232 179 DTMQYVLPPIATWCVGQACSMASLLLAAGE 208 (486)
Q Consensus 179 D~L~~~~~kItt~vdGlAAS~As~IlaAG~ 208 (486)
-...+.+|.+.+++.++|+|-.++++-.
T Consensus 153 --~~~~~~pv~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 153 --RYGYTKPVYVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred --cccCCCCEEEEeCCCcCcHHHHHHHHHH
Confidence 1235678999999999999987776653
No 184
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=34.79 E-value=2e+02 Score=29.79 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=60.2
Q ss_pred CcchHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCccccc
Q psy18232 79 DDSLSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSL 157 (486)
Q Consensus 79 ~d~~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~ 157 (486)
.....+.+.+.|..++.. +.+.++|-+ +.|||++..+..+.+.+-.- .+ ..+... -.|.
T Consensus 162 ~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~-~~-~~~~~~----------~~g~------- 221 (334)
T TIGR00225 162 SEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITK-GP-IVQTKD----------RNGS------- 221 (334)
T ss_pred ccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCC-Cc-EEEEEc----------CCCc-------
Confidence 445567777777776554 578899998 88999999888887766532 22 111111 0000
Q ss_pred CCceeEeecCCCccccchhhhccccccCCCeEEEEecccchhhHHHHhhccc
Q psy18232 158 PNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209 (486)
Q Consensus 158 ~ni~I~INSPGG~v~~glAIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~ 209 (486)
.. ..-.++. +....++.+.+++.++|+|-+++++=..
T Consensus 222 --~~-~~~~~~~------------~~~~~pv~vLvn~~TaSaaE~~a~~l~~ 258 (334)
T TIGR00225 222 --KR-HYKANGR------------QPYNLPLVVLVNRGSASASEIFAGALQD 258 (334)
T ss_pred --ce-EEecCCC------------ccCCCCEEEEECCCCCcHHHHHHHHHHh
Confidence 00 0011111 1346799999999999999888777644
No 185
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=33.91 E-value=1.8e+02 Score=30.48 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=42.5
Q ss_pred ccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHH-----------HHHHHhhcCCCceEEEeccchhHHH
Q psy18232 75 MGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLG-----------IYDTMQYVLPPIATWCVGQACSMAS 143 (486)
Q Consensus 75 ~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~agla-----------IyD~I~~ik~~V~tvv~G~AAS~as 143 (486)
+|.+...+.+++.+.+...... .-|+++...|.|+....|.. ++.....-..|..++..|-++.+++
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~--rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~a 223 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE--SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVT 223 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc--CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHH
Confidence 3444444566776666544333 46999999999988665541 1211112335777777774444444
Q ss_pred HH-HHcCCC
Q psy18232 144 LL-LAAGEK 151 (486)
Q Consensus 144 ~I-a~aGd~ 151 (486)
+. ++.||-
T Consensus 224 as~a~l~Di 232 (296)
T CHL00174 224 ASFGMLGDI 232 (296)
T ss_pred HHHHHcccE
Confidence 43 445773
No 186
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=32.91 E-value=2e+02 Score=32.06 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=58.1
Q ss_pred EEccccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHH-------HHH-HHHhh-cCCCceEEEeccchhHHH
Q psy18232 73 CVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGL-------GIY-DTMQY-VLPPIATWCVGQACSMAS 143 (486)
Q Consensus 73 fl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~agl-------aIy-D~I~~-ik~~V~tvv~G~AAS~as 143 (486)
|.+|.+......++++.+...... .-|++..+.|.|+....+. .++ ...+. -..|..+++.|-+...++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~~--~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMKM--GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 456666666777777666544332 4699999999998864432 223 22222 236888889998888888
Q ss_pred HHHHcCCCCcccccCCc-eeEeecC
Q psy18232 144 LLLAAGEKGMRHSLPNS-RIMIHQP 167 (486)
Q Consensus 144 ~Ia~aGd~~~R~a~~ni-~I~INSP 167 (486)
+....+|-. .+.++. .+.+..|
T Consensus 171 ~~~al~D~v--im~~~~a~i~~aGP 193 (512)
T TIGR01117 171 YSPALTDFI--YMVDNTSQMFITGP 193 (512)
T ss_pred HHHHhcCce--EEeccceEEEecCh
Confidence 888788843 555543 4555544
No 187
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=32.77 E-value=46 Score=33.50 Aligned_cols=41 Identities=15% Similarity=0.125 Sum_probs=23.9
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.++..+-|+| .+.|....+|.-+-
T Consensus 41 l~~~~~~eL~~~l~~~~~d~~vr~vVl--tg~g~~FsaG~Dl~ 81 (277)
T PRK08258 41 LTFESYAELRDLFRELVYADDVKAVVL--TGAGGNFCSGGDVH 81 (277)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--eCCCCCcccccCHH
Confidence 455566777777776666555544443 45555555565443
No 188
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=31.12 E-value=48 Score=32.77 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=26.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.++..+.|+| .+.|+...+|.-+-
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~ 69 (259)
T PRK06688 29 LTAAMYQALADALEAAATDPAVRVVVL--TGAGRAFSAGGDIK 69 (259)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCccCccCHH
Confidence 566677888888887777665555554 45555555665543
No 189
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=30.62 E-value=54 Score=32.56 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=26.0
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD 121 (486)
++.+....+.+.|..++.+++.+-|+| .+.|....+|.-+-.
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vVl--~g~g~~F~~G~Dl~~ 68 (260)
T PRK07511 27 LHPDMYAAGIEALNTAERDPSIRAVVL--TGAGGFFCAGGNLNR 68 (260)
T ss_pred CCHHHHHHHHHHHHHhccCCCeEEEEE--ECCCCCcccCcCHHH
Confidence 555666777777777776665554444 465655556655443
No 190
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=30.24 E-value=1.1e+02 Score=27.63 Aligned_cols=63 Identities=21% Similarity=0.068 Sum_probs=31.8
Q ss_pred HhCCCHHHHHhhhccccccChhhH-----HHHH----------HHHHHHHhCCcHHHHhhccccccCCCHHHHHHHHHhh
Q psy18232 257 HTGLSIEKIGKSTVCFYVLHDPYI-----CFWI----------NGLYVKHTGLSIEKIGKSTNLTEELSSVVKVTYITNF 321 (486)
Q Consensus 257 ~TG~s~E~I~~~m~rd~wmsa~e~-----~e~L----------~~~eAk~~GLiDEiI~~~~d~e~~lta~eAv~~~~~~ 321 (486)
+.|.+.++|.+...=|.|+=.+.- .+.| .-.+||+.|++|..|...... ..+.|....+-
T Consensus 21 rrG~sveeI~e~T~ID~wFL~~i~~Iv~~e~~L~~~~~~~~~~~L~~aK~~GFsD~~IA~l~~~-----~e~~vr~~R~~ 95 (123)
T PF02787_consen 21 RRGYSVEEIHELTKIDPWFLEQIKNIVDMEKELKEYLNELDPELLRKAKRLGFSDRQIARLWGV-----SEEEVRELRKE 95 (123)
T ss_dssp HTTB-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHTT--HHHHHHHHTS------HHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCccHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHcCCCHHHHHhccCC-----CHHHHHHHHHH
Confidence 346666666666655555533211 0111 226799999999999987554 35556555554
Q ss_pred hhc
Q psy18232 322 HKI 324 (486)
Q Consensus 322 ~k~ 324 (486)
.++
T Consensus 96 ~~i 98 (123)
T PF02787_consen 96 HGI 98 (123)
T ss_dssp HT-
T ss_pred cCC
Confidence 444
No 191
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=29.98 E-value=52 Score=32.68 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=24.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+| .+-|....+|.-+
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVl--tg~g~~F~aG~Dl 65 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVI--TGNARFFAAGADL 65 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEE--ECCCCceecccCh
Confidence 455566777777777776665554444 4555555555544
No 192
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=29.94 E-value=51 Score=32.61 Aligned_cols=40 Identities=8% Similarity=0.260 Sum_probs=24.2
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+..+.+.+.+..++.++..+-|+| .+.|....+|.-+
T Consensus 24 l~~~~~~~l~~a~~~~~~d~~vr~vVl--~g~g~~F~aG~Dl 63 (248)
T PRK06072 24 LNLEMRNEFISKLKQINADPKIRVVIV--TGEGRAFCVGADL 63 (248)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCCCCcccCcCH
Confidence 455677778888877776655554443 4555555555544
No 193
>PRK05869 enoyl-CoA hydratase; Validated
Probab=29.76 E-value=53 Score=32.14 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=26.6
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.+++.+.|++ .+.|+...+|.-+-
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~ 71 (222)
T PRK05869 31 LTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMP 71 (222)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHH
Confidence 455667788888887777766665554 55565555665554
No 194
>PRK08139 enoyl-CoA hydratase; Validated
Probab=29.35 E-value=76 Score=31.80 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=35.9
Q ss_pred HHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCceeEe
Q psy18232 119 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164 (486)
Q Consensus 119 IyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I~I 164 (486)
+++.|...++|+...+-|.|..+|..+++++| .|++.++..+..
T Consensus 96 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~ 139 (266)
T PRK08139 96 VMQAIVALPQPVIARVHGIATAAGCQLVASCD--LAVAADTARFAV 139 (266)
T ss_pred HHHHHHhCCCCEEEEECceeeHHHHHHHHhCC--EEEEeCCCEEeC
Confidence 45567788899999999999999999999999 477777765543
No 195
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=28.97 E-value=59 Score=32.26 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=22.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCC-cccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPG-GSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPG-Gsv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+ +.+.| +...+|.-+
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vv--l~g~g~~~F~aG~Dl 68 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVI--LTGAGEKAFVAGADI 68 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEE--EEcCCCCceeeCcCh
Confidence 45556667777776666655544343 45656 455555544
No 196
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=28.91 E-value=43 Score=33.71 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=24.5
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.|..++.++..+-|+| .+.|....+|.-+
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vrvvVl--tg~g~~FcaG~Dl 71 (275)
T PLN02664 32 LSLDFFTEFPKALSSLDQNPNVSVIIL--SGAGDHFCSGIDL 71 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEE--ECCCCceeeCcCh
Confidence 566677788888877776665554333 4555455555544
No 197
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=28.88 E-value=51 Score=33.05 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=24.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.+++.+.|+| .+.|+ ..-+|.-+
T Consensus 35 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~~FcaG~Dl 75 (269)
T PRK06127 35 MSLDMWEALPQALAAAEDDDAIRVVVL--TGAGEKAFVSGADI 75 (269)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEE--EeCCCCceecCcCH
Confidence 555677788888887777765554443 45553 44555544
No 198
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=28.86 E-value=59 Score=32.37 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|++.|++++++..
T Consensus 162 ~~~a~eA~~~Glv~~vv~~ 180 (255)
T PRK08150 162 VYDAQEGERLGLAQYLVPA 180 (255)
T ss_pred cCCHHHHHHcCCccEeeCc
Confidence 4555689999999987764
No 199
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=28.82 E-value=57 Score=32.55 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=24.0
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.|..++.++..+.|+| .+.|....+|.-+-
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~ 69 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVL--TGAGKSFCAGGDLG 69 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEE--ECCCCcccCCcCHH
Confidence 445566677777766665554444444 45565666665554
No 200
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=28.46 E-value=52 Score=32.65 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=25.8
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYD 121 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIyD 121 (486)
++.+....+.+.+..++.++..+-|+ +.+.|+...+|.-+-.
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~v~~vV--l~g~g~~F~aG~Dl~~ 67 (255)
T PRK07260 26 FNIPMCQEILEALRLAEEDPSVRFLL--INANGKVFSVGGDLVE 67 (255)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEE--EECCCCCcccccCHHH
Confidence 45556667777777666665555444 4666766667765543
No 201
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=28.42 E-value=1.8e+02 Score=26.08 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhhhhcCCCCCeEEEE-eCCCcccchHHHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCc
Q psy18232 82 LSSVVVAQLLFLQSESSKKPIHMYI-NSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160 (486)
Q Consensus 82 ~a~~ii~qLl~L~~ed~~k~I~L~I-NSPGGsv~aglaIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni 160 (486)
..+.+.+.+..+.. .+.+.+.|-+ +.+||+...+..+...+.. .+.......
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~--~~~~~~~~~------------------------ 68 (169)
T PF03572_consen 16 FDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIP--KPIIFYYRD------------------------ 68 (169)
T ss_dssp HHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSS--SSEEEEEEE------------------------
T ss_pred cHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccC--CCcEEEEec------------------------
Confidence 34455555555554 5678999999 8889998877777665554 222211111
Q ss_pred eeEeecCCCccccchhhhc-cccccCCCeEEEEecccchhhHHHHhhccc
Q psy18232 161 RIMIHQPSGGVQVGLGIYD-TMQYVLPPIATWCVGQACSMASLLLAAGEK 209 (486)
Q Consensus 161 ~I~INSPGG~v~~glAIyD-~L~~~~~kItt~vdGlAAS~As~IlaAG~~ 209 (486)
...+......... .+ .-.....++.+.+++.++|+|..++++-..
T Consensus 69 --~~~~~~~~~~~~~--~~~~~~~~~~~v~vL~~~~t~Saae~fa~~lk~ 114 (169)
T PF03572_consen 69 --RIGSNKKWVSTIK--WSTPKNRFNGPVYVLTDENTASAAEIFASALKD 114 (169)
T ss_dssp --EEEEETTCCHEEE--ECSSTT-SSSEEEEEE-TTBBTHHHHHHHHHHH
T ss_pred --ccccccccccCCC--CccccccCCCCEEEEeCCCCCChhHHHHHHHHh
Confidence 0000000000000 00 033467889999999999999887776533
No 202
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=28.03 E-value=63 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=24.4
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.++..+.|+| .+.|+ ...+|.-+
T Consensus 31 l~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~~F~aG~Dl 71 (256)
T PRK06143 31 LGTPVILALTQALRWLAADPDVRVLVL--RGAGEKAFIGGADI 71 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EeCCCCcccCCcCH
Confidence 566677888888887776655544443 44452 45566544
No 203
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=27.07 E-value=66 Score=32.09 Aligned_cols=19 Identities=11% Similarity=-0.050 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.||++.||+++++..
T Consensus 167 ~~~a~eA~~~Glv~~vv~~ 185 (259)
T TIGR01929 167 QYDAEQALDMGLVNTVVPL 185 (259)
T ss_pred ccCHHHHHHcCCcccccCH
Confidence 4556689999999988764
No 204
>KOG1701|consensus
Probab=26.84 E-value=20 Score=39.03 Aligned_cols=18 Identities=39% Similarity=1.054 Sum_probs=15.3
Q ss_pred ccccccccccccccccCCceEE
Q psy18232 417 YPITHSFANDSICKCCHGRRII 438 (486)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~ 438 (486)
||+|.|+ .||-||+.|+-
T Consensus 447 yPld~Hl----lCk~Ch~~Rl~ 464 (468)
T KOG1701|consen 447 YPLDGHL----LCKTCHLKRLQ 464 (468)
T ss_pred eeccCce----eechhhhhhhc
Confidence 8998876 69999999863
No 205
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=26.79 E-value=67 Score=31.76 Aligned_cols=41 Identities=10% Similarity=0.242 Sum_probs=26.0
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.++..+.|+| .+.|....+|.-+-
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~ 67 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVV--TGAGKAFCAGADLT 67 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCCCCeecCcChH
Confidence 455677788888887777665554444 46665555665544
No 206
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=26.54 E-value=77 Score=31.37 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCcee
Q psy18232 118 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 162 (486)
Q Consensus 118 aIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~I 162 (486)
.++..|...++|+...+-|.|..+|..+++++| .|++.++.++
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD--~ria~~~a~f 130 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCD--LTFASPRSLF 130 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCC--EEEEeCCCEe
Confidence 456678888999999999999999999999999 4666666544
No 207
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=26.26 E-value=64 Score=31.98 Aligned_cols=40 Identities=8% Similarity=0.185 Sum_probs=25.3
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.++ .+.|+|. +.|....+|.-+-
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVlt--g~g~~F~aG~Dl~ 62 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLT--GAGRGFCAGQDLS 62 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEE--CCCCCcccCcCHH
Confidence 45567778888888777665 6555554 5555555665543
No 208
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=26.22 E-value=58 Score=32.27 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.||++.|++++++..
T Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 168 PISAAEALELGLVDEVVPD 186 (257)
T ss_pred cCCHHHHHHcCCcCeeeCC
Confidence 4566689999999987763
No 209
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=25.85 E-value=74 Score=31.61 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=24.5
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++.+++.+-|+| .+.|+...+|.-+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl 67 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVL--AGAGKAFCAGADL 67 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEE--ECCCCccccCcCH
Confidence 455667777778877776655544443 5666555556544
No 210
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=25.78 E-value=63 Score=32.05 Aligned_cols=41 Identities=17% Similarity=0.390 Sum_probs=26.2
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+..+.+.+.+..++.++..+.|+| .+.|+...+|.-+-
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~ 67 (262)
T PRK07509 27 LDFAMFEELIATIKRLKKDRGIRAVIL--SGEGGAFCAGLDVK 67 (262)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEE--ECCCCCcCCCcCHH
Confidence 455677788888887777665554444 56666666665443
No 211
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=25.46 E-value=72 Score=31.79 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred chHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 81 SLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 81 ~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
+....+...+..++.++..+-|+| .+.|....+|.-+-
T Consensus 31 ~~~~~l~~~l~~~~~d~~vr~vVl--~g~g~~F~aG~Dl~ 68 (266)
T PRK09245 31 DAVDALVAACAAINADRSVRAVIL--TGAGTAFSSGGNVK 68 (266)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccCcCHH
Confidence 445566666766666655554444 45565556665543
No 212
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=25.27 E-value=74 Score=31.64 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.||++.|++++++..
T Consensus 164 ~~~a~eA~~~Glv~~vv~~ 182 (256)
T TIGR03210 164 RYTAQEALAMGLVNAVVPH 182 (256)
T ss_pred CcCHHHHHHcCCceeeeCH
Confidence 4556689999999988754
No 213
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=24.40 E-value=79 Score=31.40 Aligned_cols=39 Identities=8% Similarity=0.217 Sum_probs=24.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++ ++..+.|+|. +.|....+|.-+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~--g~g~~F~aG~Dl 66 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLT--GAGRGFCAGQDL 66 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEE--CCCCCcccCcCh
Confidence 45566777888887777 6666555553 445455555544
No 214
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=24.27 E-value=61 Score=32.43 Aligned_cols=41 Identities=10% Similarity=0.294 Sum_probs=24.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.+++.+-|+| .+.|....+|.-+-
T Consensus 30 l~~~~~~~l~~~l~~~~~d~~vr~vVl--~g~g~~FcaG~Dl~ 70 (272)
T PRK06142 30 MNPAFWSELPEIFRWLDADPEVRAVVL--SGSGKHFSYGIDLP 70 (272)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEE--ECCCCceecccCHH
Confidence 566677788888777776655444444 45555555665443
No 215
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=23.97 E-value=84 Score=31.26 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=22.9
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+| .+-|+ ...+|.-+
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vrvvVl--~g~g~~~F~aG~Dl 66 (258)
T PRK09076 26 WTADSLQALKQLVLELNADKDVYALVI--TGDGEKFFSAGADL 66 (258)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCceEeCcCH
Confidence 455666777777777776655443333 45453 34555544
No 216
>KOG0540|consensus
Probab=23.48 E-value=2.5e+02 Score=31.37 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=21.2
Q ss_pred cccCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCC
Q psy18232 76 GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPG 110 (486)
Q Consensus 76 G~I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPG 110 (486)
|-+..+++.+...-+.+..+. .=|+.+..|+||
T Consensus 363 G~L~s~sa~KgarfIe~c~q~--~IPLi~l~ni~G 395 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQR--NIPLIFLQNITG 395 (536)
T ss_pred cccchhhhhhhHHHHHHHHhc--CCcEEEEEccCC
Confidence 444445665555555544443 458999999998
No 217
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=23.33 E-value=77 Score=31.47 Aligned_cols=40 Identities=18% Similarity=0.368 Sum_probs=23.5
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.++..+.|+| .+.|+ ...+|.-+
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl 67 (260)
T PRK05980 27 LNYALIDRLLARLDAIEVDESVRAVIL--TGAGDRAFSAGADI 67 (260)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEE--EeCCCCceEcCcCH
Confidence 455667777777777776655554444 44453 44555544
No 218
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=23.20 E-value=79 Score=31.43 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=24.6
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.++..+.|+| .+.|+ ...+|.-+
T Consensus 28 l~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl 68 (260)
T PRK07657 28 LSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADL 68 (260)
T ss_pred CCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcCh
Confidence 556677788888877776655443333 55564 55666544
No 219
>PLN02600 enoyl-CoA hydratase
Probab=22.83 E-value=86 Score=31.10 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=22.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+| -+.|| ...+|.-+
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl--~g~~g~~F~aG~Dl 59 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVML--RSSVPGVFCAGADL 59 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEE--ecCCCCceeeCcCH
Confidence 455667777777777776655554444 34433 44445443
No 220
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=22.61 E-value=88 Score=30.93 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=38.9
Q ss_pred hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceeeec
Q psy18232 176 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223 (486)
Q Consensus 176 AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iMIH 223 (486)
.++..+...+.++.+.+.|.|...|.-++++|+- |++.+++++..-
T Consensus 77 ~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~p 122 (243)
T PRK07854 77 EMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDL--RVVAPEAYFQFP 122 (243)
T ss_pred HHHHHHHhCCCCEEEEecCcccccHHHHHHhCCE--EEEcCCCEEecc
Confidence 4566778889999999999999999999999986 688888887643
No 221
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=22.50 E-value=83 Score=32.06 Aligned_cols=40 Identities=5% Similarity=0.232 Sum_probs=23.2
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.|..++.++..+-|+| .+.|....+|.-+
T Consensus 28 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl 67 (296)
T PRK08260 28 FTVTMARELIEAFDAADADDAVRAVIV--TGAGRAFCAGADL 67 (296)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEE--ECCCCCeecCcCh
Confidence 455666777777777766655444443 4445444455443
No 222
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=22.20 E-value=90 Score=31.40 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=24.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.++..+.|+| .+.|....+|.-+-
T Consensus 34 l~~~~~~~L~~~l~~~~~d~~vrvvVl--~g~g~~FcaG~Dl~ 74 (276)
T PRK05864 34 MAFDVMVPLKEALAEVSYDNSVRVVVL--TGAGRGFSSGADHK 74 (276)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCeecCcchh
Confidence 455666777777777776655544444 44454555555443
No 223
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=21.84 E-value=80 Score=31.43 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=23.2
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+...+..+ .+++.+ .+-+.+.|+...+|.-+-
T Consensus 30 l~~~~~~~l~~~l~~~-~d~~vr--vvvl~g~g~~F~aG~Dl~ 69 (260)
T PRK07659 30 LDEPMLKELLQALKEV-AESSAH--IVVLRGNGRGFSAGGDIK 69 (260)
T ss_pred CCHHHHHHHHHHHHHh-cCCCee--EEEEECCCCCcccccCHH
Confidence 4556677777777766 343333 234456666666665543
No 224
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=21.83 E-value=91 Score=31.45 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=24.8
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++.+++.+.|+| .+.|....+|.-+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl--~g~g~~F~aG~Dl 71 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVL--TGAGDAWSAGMDL 71 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEE--EcCCCceecCcCH
Confidence 566677777777777776665555554 4555555555544
No 225
>KOG1680|consensus
Probab=21.63 E-value=1.2e+02 Score=31.62 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=34.2
Q ss_pred HHHHHHHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCc
Q psy18232 117 LGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNS 160 (486)
Q Consensus 117 laIyD~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni 160 (486)
+.-|+.+..+++||..-+.|+|...|..+++.+| -|++.+++
T Consensus 117 ~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCD--irva~~~A 158 (290)
T KOG1680|consen 117 LRVWDLVSRLKKPVIAAINGFALGGGLELALMCD--IRVAGEGA 158 (290)
T ss_pred cchhhhhhhcccceeEeeeceeeccchhhhhhcc--eEeccCCC
Confidence 3456777789999999999999999999999999 35655554
No 226
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=21.57 E-value=1e+02 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCc-ccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGG-SVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGG-sv~aglaIy 120 (486)
++.+....+.+.+..++.++..+.|+| .+.|+ ...+|.-+-
T Consensus 26 l~~~~~~~l~~~l~~~~~d~~vr~vvl--~g~g~~~F~aG~Dl~ 67 (261)
T PRK03580 26 IDAKTSFAMGEVFLNFRDDPELRVAII--TGAGEKFFSAGWDLK 67 (261)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEE--EeCCCCceecccCHH
Confidence 455566777777777776655544444 34454 355555443
No 227
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=21.37 E-value=1e+02 Score=30.09 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCC-ceeeecC
Q psy18232 176 GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPN-SRIMIHQ 224 (486)
Q Consensus 176 AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pn-a~iMIHq 224 (486)
.++..+...+.++.+.+.|.|...|.-++++++- |++.++ +++.+..
T Consensus 82 ~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~--rva~~~~a~f~~pe 129 (229)
T PRK06213 82 TLARRLLSHPKPVIVACTGHAIAKGAFLLLSADY--RIGVHGPFKIGLNE 129 (229)
T ss_pred HHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCe--eeEecCCcEEECch
Confidence 4566788899999999999999999999999986 688888 7776543
No 228
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=21.37 E-value=1.1e+02 Score=30.31 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHhhcCCCceEEEeccchhHHHHHHHcCCCCcccccCCce
Q psy18232 122 TMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 161 (486)
Q Consensus 122 ~I~~ik~~V~tvv~G~AAS~as~Ia~aGd~~~R~a~~ni~ 161 (486)
.+...++||...+-|.|..+|..+++++| .|++.++..
T Consensus 87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~ 124 (255)
T PRK06563 87 VGRRLSKPLVVAVQGYCLTLGIELMLAAD--IVVAADNTR 124 (255)
T ss_pred HHhcCCCCEEEEEcCeeecHHHHHHHhCC--EEEecCCCE
Confidence 46677899999999999999999999999 366666553
No 229
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=21.25 E-value=95 Score=31.03 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|++.|++++++..
T Consensus 166 ~~~a~eA~~~GLv~~vv~~ 184 (261)
T PRK11423 166 PITAQRALAVGILNHVVEV 184 (261)
T ss_pred CcCHHHHHHcCCcCcccCH
Confidence 4555589999999988754
No 230
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=21.24 E-value=94 Score=30.79 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=25.0
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+..+.+.+.+..++.++..+-|+|. +.|....+|.-+
T Consensus 29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~--g~g~~F~aG~Dl 68 (249)
T PRK07110 29 FSDELCDQLHEAFDTIAQDPRYKVVILT--GYPNYFATGGTQ 68 (249)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEE--CCCCCeeCCcCh
Confidence 4556667777777777766655655554 566655556543
No 231
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=21.21 E-value=86 Score=31.15 Aligned_cols=41 Identities=12% Similarity=0.284 Sum_probs=24.1
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaIy 120 (486)
++.+....+.+.+..++.+++.+-|+| .+.|+...+|.-+-
T Consensus 30 l~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~ 70 (260)
T PRK07827 30 LSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLS 70 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChH
Confidence 455566777777766665554443433 56676666665543
No 232
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=21.07 E-value=1e+02 Score=30.77 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=24.4
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+|. +.|....+|.-+
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~--g~g~~F~aG~Dl 71 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLT--GGEKVFAAGADI 71 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEE--CCCCCeeCCcCH
Confidence 5556677777777777766555555543 445555555544
No 233
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=21.03 E-value=1.5e+02 Score=24.89 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=26.2
Q ss_pred EEEEccccCcchHHHHHHHHHhhhhcCCCCCeEE
Q psy18232 71 IICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104 (486)
Q Consensus 71 IIfl~G~I~d~~a~~ii~qLl~L~~ed~~k~I~L 104 (486)
++.+.|+++...++.+.+++..+-...+.+.+.+
T Consensus 11 vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 11 IVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 5779999999999999999876544344566776
No 234
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=20.54 E-value=94 Score=30.73 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=23.5
Q ss_pred cCcchHHHHHHHHHhhhhcCCCCCeEEEEeCCCcccchHHHH
Q psy18232 78 IDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGI 119 (486)
Q Consensus 78 I~d~~a~~ii~qLl~L~~ed~~k~I~L~INSPGGsv~aglaI 119 (486)
++.+....+.+.+..++.++..+-|+| .+.|....+|.-+
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl--~g~g~~F~aG~Dl 64 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVI--HGEGRFFSAGADI 64 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCceEeCcCH
Confidence 455566777777776676655554444 5555555555544
No 235
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=20.30 E-value=82 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.092 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCcHHHHhh
Q psy18232 283 WINGLYVKHTGLSIEKIGK 301 (486)
Q Consensus 283 ~L~~~eAk~~GLiDEiI~~ 301 (486)
.+++.+|++.|++|+.+..
T Consensus 163 ~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 163 RISAEEALELGLVDEVVPD 181 (195)
T ss_pred ccCHHHHHHcCCCCeecCh
Confidence 3455589999999987764
No 236
>KOG1682|consensus
Probab=20.24 E-value=82 Score=31.68 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=38.0
Q ss_pred ecCCCccccch-----hhhccccccCCCeEEEEecccchhhHHHHhhcccccccccCCceee
Q psy18232 165 HQPSGGVQVGL-----GIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 221 (486)
Q Consensus 165 NSPGG~v~~gl-----AIyD~L~~~~~kItt~vdGlAAS~As~IlaAG~~gkR~m~Pna~iM 221 (486)
|.||.+..+.. -+.+-+++++-+|...+-|.|+.+|.-+.+.|+-. .+..++.+.
T Consensus 100 ~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~v--Va~k~SkF~ 159 (287)
T KOG1682|consen 100 NEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMV--VATKNSKFS 159 (287)
T ss_pred cCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEE--EEecCcccc
Confidence 45665533222 56678899999999999999999987777776543 344444443
Done!