RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18232
(486 letters)
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial
CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET:
FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Length = 277
Score = 323 bits (829), Expect = e-108
Identities = 135/240 (56%), Positives = 155/240 (64%), Gaps = 58/240 (24%)
Query: 30 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQ 89
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQ
Sbjct: 43 ALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQ 102
Query: 90 LLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 149
LLFLQSES+KKPIHMYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG
Sbjct: 103 LLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAG 162
Query: 150 EKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209
GMRHSLPNSRIMIHQPSGG + GQA
Sbjct: 163 TPGMRHSLPNSRIMIHQPSGGAR---------------------GQA------------- 188
Query: 210 GMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQAEEI+ LKKQ+ +Y KHT S++ I +
Sbjct: 189 ------------------------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM 224
Score = 88.2 bits (219), Expect = 8e-20
Identities = 35/49 (71%), Positives = 42/49 (85%)
Query: 366 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L + H +AT + PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGP+
Sbjct: 43 ALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPI 91
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic
protease, serin-protease, hydrolase; 2.10A
{Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V
3st9_A
Length = 203
Score = 313 bits (805), Expect = e-106
Identities = 96/226 (42%), Positives = 129/226 (57%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
L+P VIE T RGERAYDIYSRLL++RII + IDD++++ +V+QLLFLQ++ S+K I+
Sbjct: 2 NLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIY 61
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
+YINSPGGSVT+G IYDT+Q++ P + T C+G A SM S LLAAG KG R +LPN+ +M
Sbjct: 62 LYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVM 121
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQP GG Q GQA
Sbjct: 122 IHQPLGGAQ---------------------GQA--------------------------- 133
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
T+I+I A I+ ++++N + + TG SIEKI K T
Sbjct: 134 ----------TEIEIAANHILKTREKLNRILSERTGQSIEKIQKDT 169
Score = 81.0 bits (201), Expect = 8e-18
Identities = 22/35 (62%), Positives = 27/35 (77%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
L+P VIE T RGERAYDIYSRLL++RII + +
Sbjct: 2 NLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQI 36
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP,
caseinolytic protease, protease TI, heat shock protein
F21.5, hydrolase; 1.90A {Escherichia coli} SCOP:
c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A
2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A
3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Length = 193
Score = 312 bits (801), Expect = e-105
Identities = 96/225 (42%), Positives = 134/225 (59%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP+VIEQT RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYL 61
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG +T+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MI
Sbjct: 62 YINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMI 121
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG Q GQA
Sbjct: 122 HQPLGGYQ---------------------GQA---------------------------- 132
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI+I A EI+ +K ++N L HTG S+E+I + T
Sbjct: 133 ---------TDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT 168
Score = 80.2 bits (199), Expect = 9e-18
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP+VIEQT RGER++DIYSRLL+ER+I + G V
Sbjct: 2 LVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQV 35
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.29A {Francisella tularensis subsp}
Length = 201
Score = 310 bits (796), Expect = e-105
Identities = 95/225 (42%), Positives = 129/225 (57%), Gaps = 58/225 (25%)
Query: 45 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHM 104
LVP VIE+T GERA+DIYSRLL+ERI+ + G ++D +++V+AQLLFL+SE K I+
Sbjct: 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYF 65
Query: 105 YINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 164
YINSPGG VT+G+G+YDTMQ++ P ++T C+G A SM SLLLA G KG R+SLP+S+IMI
Sbjct: 66 YINSPGGMVTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMI 125
Query: 165 HQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQ 224
HQP GG + GQA
Sbjct: 126 HQPLGGFR---------------------GQA---------------------------- 136
Query: 225 PSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+DI+I A+ I+ +K ++N + HTG +E I K T
Sbjct: 137 ---------SDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDT 172
Score = 79.5 bits (197), Expect = 2e-17
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
LVP VIE+T GERA+DIYSRLL+ERI+ + G V
Sbjct: 6 LVPTVIEKTAGGERAFDIYSRLLKERIVFLNGEV 39
>2f6i_A ATP-dependent CLP protease, putative; structural genomics,
structural genomics conso SGC, hydrolase; 2.45A
{Plasmodium falciparum} SCOP: c.14.1.1
Length = 215
Score = 298 bits (766), Expect = e-100
Identities = 65/239 (27%), Positives = 94/239 (39%), Gaps = 59/239 (24%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQL 90
+ + HH S + D+ ++RII + I+ + +++QL
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQL 60
Query: 91 LFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGE 150
L+L + + I +YINSPGGS+ GL I D Y+ I T G SMAS++LA+G+
Sbjct: 61 LYLDNINHN-DIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGK 119
Query: 151 KGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKG 210
KG R SLPN RIMIHQP G G
Sbjct: 120 KGKRKSLPNCRIMIHQPLGNAF---------------------GHP-------------- 144
Query: 211 MRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI+IQ +EI+ LKK + T ++E I K +
Sbjct: 145 -----------------------QDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS 180
Score = 78.4 bits (194), Expect = 7e-17
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+ + HH S + D+ ++RII + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMDIKDMKKDVKLFFFKKRIIYLTDEI 48
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A
{Streptococcus pneumoniae} SCOP: c.14.1.1
Length = 218
Score = 297 bits (763), Expect = 1e-99
Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 56/240 (23%)
Query: 30 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQ 89
H ++P+VIEQT RGER+YDIYSRLL++RII + GP++D++++ V+AQ
Sbjct: 6 HHHHHSSGLVPRGSHMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQ 65
Query: 90 LLFLQSESSKKPIHMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAG 149
LLFL ++ S K I++Y+N+PGGSV++GL I DTM ++ + T +G A SM +++ ++G
Sbjct: 66 LLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSG 125
Query: 150 EKGMRHSLPNSRIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEK 209
KG R LPN+ MIHQP GG G Q
Sbjct: 126 AKGKRFMLPNAEYMIHQPMGGTG-G------------------GTQQ------------- 153
Query: 210 GMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+ + I E ++ + + + +++G S+EK+
Sbjct: 154 --------TDMAIA----------------PEHLLKTRNTLEKILAENSGQSMEKVHADA 189
Score = 80.7 bits (200), Expect = 1e-17
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 366 HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
H ++P+VIEQT RGER+YDIYSRLL++RII + GPV
Sbjct: 6 HHHHHSSGLVPRGSHMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPV 54
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease,
endopept mycobacterium tuberculosis, ATP-dependent
protease; 2.6A {Mycobacterium tuberculosis} SCOP:
c.14.1.1 PDB: 2c8t_A 2ce3_A
Length = 208
Score = 285 bits (731), Expect = 5e-95
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 60/227 (26%)
Query: 44 PLVPIVIEQTGRGERAYD-IYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPI 102
V + +G D +Y RLL ERII + ++D +++ + AQ+L L +E + K I
Sbjct: 2 SQVT-DMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDI 60
Query: 103 HMYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 162
+YINSPGGS+++G+ IYDTM IAT+ +G A SM LLAAG KG R++LP++RI
Sbjct: 61 SLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARI 120
Query: 163 MIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMI 222
++HQP GGV G A
Sbjct: 121 LMHQPLGGVT---------------------GSA-------------------------- 133
Query: 223 HQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
DI IQAE+ +KK++ L + TG IE+I +
Sbjct: 134 -----------ADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 169
Score = 63.0 bits (154), Expect = 1e-11
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 380 PLVPIVIEQTGRGERAYD-IYSRLLRERIICVMGPV 414
V + +G D +Y RLL ERII + V
Sbjct: 2 SQVT-DMRSNSQGLSLTDSVYERLLSERIIFLGSEV 36
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 86.6 bits (214), Expect = 1e-19
Identities = 19/115 (16%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 64 SRLLRERIICVM---GPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120
S +L + I+ V G I + + ++++ I + +++PGG + + I
Sbjct: 2 SPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEA-IIIELDTPGGRADAMMNIV 60
Query: 121 DTMQYVLPPIATWCV---GQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 172
+Q P+ + A S + + P + I +P G
Sbjct: 61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIA--MAPGTSIGACRPILGYS 113
Score = 62.3 bits (151), Expect = 3e-11
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 6/107 (5%)
Query: 162 IMIHQPSGGVQVGLGIYDTMQYVLPPIATWCV---GQACSMASLLLAAGEKGMRHSLPNS 218
I + P G + I +Q P+ + A S + + P +
Sbjct: 44 IELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIA--MAPGT 101
Query: 219 RIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKI 265
I +P G + I+ I L + +G +
Sbjct: 102 SIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSL-AQESGRNATIA 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 6e-04
Identities = 59/461 (12%), Positives = 128/461 (27%), Gaps = 151/461 (32%)
Query: 4 KTTFCVYLEV--QSIILCPFIFQG--LSLGH----------LAKTFHH--SATLSRPLVP 47
KT V L+V + C F+ L+L + L K + SR
Sbjct: 163 KT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 48 IVIEQTGRGERAYDIYSRLLRER------IICVMGPIDDSLSSVVVA------QLLFL-- 93
I+ R RLL+ + ++ + + ++ ++L
Sbjct: 221 SNIKL--RIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNLSCKILLTTR 273
Query: 94 -----QSESSKKPIHMYINSPGGSVTS--GLGIYDTMQYV------LPPIATWCVGQACS 140
S+ H+ ++ ++T + ++Y+ LP + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQDLPR-------EVLT 324
Query: 141 MASLLL---AAGEKGMRHSLPNSR-IMIHQPSGGVQVGLGIYDTMQY--------VLP-- 186
L A + + N + + + + ++ L + + +Y V P
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 187 ---PIAT----WC---------VGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 230
P W V SL+ + S I I
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-------KQP-KESTISIP------- 429
Query: 231 GQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYVLHDPYICFWI------ 284
+++++ E L + I Y + + + D Y I
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL------DQYFYSHIGHHLKN 483
Query: 285 ----------NGLY---------VKHTGLSIEKIGKSTNLTEELSSVVKVTYITNFHKIG 325
++ ++H + G N ++L YI +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKY 541
Query: 326 AWFVNYSEATTMKKKTTFCVYLEVQSIILCPF--IFQGLSL 364
VN + F +E +++I + + + ++L
Sbjct: 542 ERLVN-----AILD---FLPKIE-ENLICSKYTDLLR-IAL 572
Score = 30.2 bits (67), Expect = 1.8
Identities = 48/285 (16%), Positives = 83/285 (29%), Gaps = 77/285 (27%)
Query: 241 EEIINLKKQINGLYVKHTGLSIEKIGKSTVCFYV---LHDPYICFWINGLYVKHTGLSIE 297
+ II K ++G ++ + V +V L Y ++ + + E
Sbjct: 52 DHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYK--FL------MSPIKTE 101
Query: 298 KIGKSTNLTEELSSVVKVTYITNFHKIGAWFVNYSEA-TTMKK----------------- 339
+ S T Y N + V+ + +++
Sbjct: 102 QRQPSMM-TRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 340 ---KTTFCVYLEV--QSIILCPFIFQG--LSLGH----------LAKTFHH--SATLSRP 380
KT V L+V + C F+ L+L + L K + SR
Sbjct: 160 GSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 381 LVPIVIEQTGRGERAYDIYSRLLRERI--IC--VMGPVSLYPITHSFANDSICKCCHGRR 436
I+ R RLL+ + C V+ V ++F C +
Sbjct: 218 DHSSNIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----SC----K 267
Query: 437 II---RIDGSNDFFL--LLCEQLSLDDISC---EERSITLLALIL 473
I+ R FL +SLD S + +LL L
Sbjct: 268 ILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 0.001
Identities = 67/410 (16%), Positives = 118/410 (28%), Gaps = 134/410 (32%)
Query: 60 YDIYSRLLRERIICVMGPIDDSLSSVVV-AQLLFLQ--------SESSKKPIHMYINSPG 110
Y Y L+ + +I L + A+ +F Q S P Y+ S
Sbjct: 177 YQTYHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 111 GSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGG 170
S P I V Q +A ++ A G S + G
Sbjct: 236 IS--------------CPLI---GVIQ---LAHYVVTAKLLGFTPGELRSYL-----KGA 270
Query: 171 VQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQ 230
G+ + + + S S ++ K + ++ GV+
Sbjct: 271 TGHSQGL----------VTAVAIAETDSWESFFVSV-RKAI-------TVLFFI---GVR 309
Query: 231 GQATDIQIQAEEIINLKKQINGLYVKHT-G-----LSIEKIGKSTVCFYV----LHDP-- 278
+A +L I +++ G LSI + + V YV H P
Sbjct: 310 CY------EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 279 ---YICFWING------------LYVKHTGL--SIEKIGKSTNL--TEELSSVVKVTYIT 319
I +NG LY GL ++ K + L + S K+ +
Sbjct: 364 KQVEISL-VNGAKNLVVSGPPQSLY----GLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 320 NFHKIGAWFVNYSEATTMKKKTTFCVYLE-VQSIILCPFIFQGLSLGHLAKTFHHSATLS 378
F + + F L +I + L +++ F+ +
Sbjct: 419 RFLPVASPF--------------HSHLLVPASDLIN-----KDLVKNNVS--FNAKD-IQ 456
Query: 379 RPLVPIVIEQTGRGERAYD--IYSRLLRERIICVMGPV-----SLYPITH 421
+P+ G R I R++ I + PV + + TH
Sbjct: 457 ---IPVYDTFDGSDLRVLSGSISERIVDC--IIRL-PVKWETTTQFKATH 500
Score = 37.7 bits (87), Expect = 0.010
Identities = 48/269 (17%), Positives = 78/269 (28%), Gaps = 90/269 (33%)
Query: 256 KHT----GLSIEKIGKSTVCFYVLHDP---YICFW------INGLYVKHT-------GLS 295
H G SI I V+++P I F I Y L
Sbjct: 1651 NHFKDTYGFSILDI--------VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 296 IEKIGKSTNLTEELSSVV-----KVTYITNFHKIGAWF-VNYSEATTMKKKTTFCVYLEV 349
EKI K + E +S + T F + A + + +K K
Sbjct: 1703 TEKIFKE--INEHSTSYTFRSEKGLLSATQFTQP-ALTLMEKAAFEDLKSKG-------- 1751
Query: 350 QSIILCPFIFQGLSLG------HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLL 403
+I F G SLG LA + + +V RG R
Sbjct: 1752 --LIPADATFAGHSLGEYAALASLADVMSIESLVE--VVFY------RGMTMQVAVPRDE 1801
Query: 404 RERIICVMGPVSLYPITHSFANDSICKCCHGRRIIRIDGSNDFFLLLCE---------QL 454
R M ++ + SF+ +++ R+ + G L E Q
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVV--ERVGKRTGW------LVEIVNYNVENQQY 1853
Query: 455 -------SLDDIS-----CEERSITLLAL 471
+LD ++ + + I ++ L
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 35.8 bits (82), Expect = 0.034
Identities = 49/351 (13%), Positives = 96/351 (27%), Gaps = 139/351 (39%)
Query: 195 QACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLY 254
A S L L+ G + H L T A + L++Q
Sbjct: 2 DAYSTRPLTLSHGS--LEHVLLVP---------------TASFFIASQ---LQEQ----- 36
Query: 255 VKHTGLSIEKIGKSTVCFY-VLHDPYICFWIN----------GLYVKHTGLSIEKIGKST 303
F +L +P F + G ++ + +E K
Sbjct: 37 -----------------FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEP-SKVG 78
Query: 304 NLTEELSSVVK---VTYI--TNFHKIGAWFVNYSEATTMKKKTTFCVYLEVQSIILCPF- 357
+ L+ + Y+ + H + A + ++ T +K K Y+ + + PF
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 358 --------------------IF--QGLS---LGHLAKTFHHSATLSRPLVPIV------- 385
IF QG + L + L L+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 386 IEQTGRGERAY----DIYSRLLRER--------IICVMGPVSLYPITHSFANDSIC--KC 431
I T E+ + +I L ++ + P+S P+ I +
Sbjct: 199 IRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSI--PISC-PL--------IGVIQL 246
Query: 432 CHGRRIIRIDGSNDFFLLLCEQLSLD--DISCEERSIT------LLALILA 474
H +++ + L ++ + T + A+ +A
Sbjct: 247 AH-------------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Score = 34.3 bits (78), Expect = 0.12
Identities = 31/176 (17%), Positives = 51/176 (28%), Gaps = 49/176 (27%)
Query: 11 LEVQSIILCPFIFQGLSLG------HLAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYS 64
L+ + +I F G SLG LA + + +V RG
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE--VVFY------RGMTMQVAVP 1798
Query: 65 RLLRERIICVMGPIDDSLSSVVVAQ--LLFLQSESSKKPIHM-----YINSPGGSVTSGL 117
R R M I+ + +Q L ++ K+ + Y N
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVEN------- 1850
Query: 118 GIYDTMQYVLPPIATWCVG--QACSMASLLL-AAGEKG-----MRHSLPNSRIMIH 165
QYV A G +A + +L + ++ SL + H
Sbjct: 1851 -----QQYV---AA----GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal
peptide digestion, bacterial membrane, hydrolase; 2.37A
{Bacillus subtilis}
Length = 240
Score = 30.3 bits (69), Expect = 1.3
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 71 IICVMGPI------------DDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT 114
++ V G I D + L + + + K I + +NSPGG V
Sbjct: 7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVY 62
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane,
transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Length = 593
Score = 30.3 bits (68), Expect = 1.8
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 70 RIICVMGPIDDSLSS-------VVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIYDT 122
++ G I D + AQ+ + + K I + +NSPGGSVT+ I
Sbjct: 304 GVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAE 363
Query: 123 MQ 124
+
Sbjct: 364 LA 365
>1h54_A Maltose phosphorylase; hydrolase, maltose metabolism; 2.15A
{Lactobacillus brevis} SCOP: a.102.1.4 b.30.5.3
Length = 754
Score = 28.9 bits (64), Expect = 4.8
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 31 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLR 68
T H S +LS + ++ ++A ++YSR R
Sbjct: 620 EPLTVHES-SLSPAIHSVLAADLHYEDKAVELYSRTAR 656
Score = 28.9 bits (64), Expect = 4.8
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 367 LAKTFHHSATLSRPLVPIVIEQTGRGERAYDIYSRLLR 404
T H S +LS + ++ ++A ++YSR R
Sbjct: 620 EPLTVHES-SLSPAIHSVLAADLHYEDKAVELYSRTAR 656
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 29.0 bits (65), Expect = 5.1
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 46 VPIVIEQTGRGER-AYDIYSRLLR 68
V + + R ER YD Y R +
Sbjct: 121 VDAWVRRAPRLERFVYDSYRRFIT 144
Score = 29.0 bits (65), Expect = 5.1
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 382 VPIVIEQTGRGER-AYDIYSRLLR 404
V + + R ER YD Y R +
Sbjct: 121 VDAWVRRAPRLERFVYDSYRRFIT 144
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 27.2 bits (61), Expect = 9.0
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 47 PIVIEQTGRGERAYDIYSRLLRER 70
+ E +G ++ L
Sbjct: 66 QLKREARMKGGFYVSPEAKPLFVV 89
Score = 27.2 bits (61), Expect = 9.0
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 383 PIVIEQTGRGERAYDIYSRLLRER 406
+ E +G ++ L
Sbjct: 66 QLKREARMKGGFYVSPEAKPLFVV 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.423
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,339,686
Number of extensions: 439132
Number of successful extensions: 1046
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1038
Number of HSP's successfully gapped: 46
Length of query: 486
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 389
Effective length of database: 3,993,456
Effective search space: 1553454384
Effective search space used: 1553454384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)