RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy18232
(486 letters)
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 184 bits (469), Expect = 1e-56
Identities = 131/226 (57%), Positives = 148/226 (65%), Gaps = 58/226 (25%)
Query: 44 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIH 103
PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMGPIDDS++S+V+AQLLFLQSES+KKPIH
Sbjct: 1 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIH 60
Query: 104 MYINSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIM 163
MYINSPGG VT+GL IYDTMQY+L PI TWCVGQA SM SLLLAAG GMRHSLPNSRIM
Sbjct: 61 MYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIM 120
Query: 164 IHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 223
IHQPSGG + GQA
Sbjct: 121 IHQPSGGAR---------------------GQA--------------------------- 132
Query: 224 QPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
TDI IQAEEI+ LKKQ+ +Y KHT S++ I +
Sbjct: 133 ----------TDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAM 168
Score = 73.8 bits (181), Expect = 6e-16
Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query: 380 PLVPIVIEQTGRGERAYDIYSRLLRERIICVMGPVSLYPITHSFANDSICKCCHGRRIIR 439
PL+PIV+EQTGRGERAYDIYSRLLRERI+CVMG PI S A+ I + +
Sbjct: 1 PLIPIVVEQTGRGERAYDIYSRLLRERIVCVMG-----PIDDSVASLVIAQLLFLQSESN 55
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 179 bits (455), Expect = 1e-54
Identities = 85/215 (39%), Positives = 123/215 (57%), Gaps = 58/215 (26%)
Query: 55 RGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVT 114
RGER++DIYSRLL+ER+I + G ++D +++++VAQ+LFL++E+ +K I++YINSPGG +T
Sbjct: 2 RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVIT 61
Query: 115 SGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVG 174
+G+ IYDTMQ++ P ++T C+GQA SM + LL AG KG R LPNSR+MIHQP GG Q
Sbjct: 62 AGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ-- 119
Query: 175 LGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQAT 234
GQA +
Sbjct: 120 -------------------GQATDI----------------------------------- 125
Query: 235 DIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+I A EI+ +K ++N L HTG S+E+I + T
Sbjct: 126 --EIHAREILKVKGRMNELMALHTGQSLEQIERDT 158
Score = 51.4 bits (123), Expect = 3e-08
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 391 RGERAYDIYSRLLRERIICVMGPVSLYPITHSFANDSICKCCH 433
RGER++DIYSRLL+ER+I + G + AN + +
Sbjct: 2 RGERSFDIYSRLLKERVIFLTG-----QVEDHMANLIVAQMLF 39
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 150 bits (381), Expect = 9e-44
Identities = 66/127 (51%), Positives = 97/127 (76%)
Query: 46 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMY 105
+P+VIEQT RGER+YDIYSRLL++RII + GP++D++++ V+AQLLFL ++ S K I++Y
Sbjct: 1 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLY 60
Query: 106 INSPGGSVTSGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIH 165
+N+PGGSV++GL I DTM ++ + T +G A SM +++ ++G KG R LPN+ MIH
Sbjct: 61 VNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIH 120
Query: 166 QPSGGVQ 172
QP GG
Sbjct: 121 QPMGGTG 127
Score = 80.5 bits (198), Expect = 4e-18
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 161 RIMIHQPSGGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRI 220
+ ++ P G V GL I DTM ++ + T +G A SM +++ ++G KG R LPN+
Sbjct: 58 YLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEY 117
Query: 221 MIHQPSGGV--QGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGK 267
MIHQP GG Q TD+ I E ++ + + + +++G S+EK+
Sbjct: 118 MIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHA 166
Score = 66.6 bits (162), Expect = 2e-13
Identities = 24/33 (72%), Positives = 30/33 (90%)
Query: 382 VPIVIEQTGRGERAYDIYSRLLRERIICVMGPV 414
+P+VIEQT RGER+YDIYSRLL++RII + GPV
Sbjct: 1 IPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPV 33
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 140 bits (355), Expect = 3e-40
Identities = 53/109 (48%), Positives = 77/109 (70%)
Query: 61 DIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSGLGIY 120
+Y RLL ERII + ++D +++ + AQ+L L +E + K I +YINSPGGS+++G+ IY
Sbjct: 5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 64
Query: 121 DTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSG 169
DTM IAT+ +G A SM LLAAG KG R++LP++RI++HQP G
Sbjct: 65 DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLG 113
Score = 95.8 bits (238), Expect = 9e-24
Identities = 50/110 (45%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 162 IMIHQPS--GGVQVGLGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSR 219
I ++ S G + G+ IYDTM IAT+ +G A SM LLAAG KG R++LP++R
Sbjct: 46 ISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHAR 105
Query: 220 IMIHQPSGGVQGQATDIQIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
I++HQP GGV G A DI IQAE+ +KK++ L + TG IE+I +
Sbjct: 106 ILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 155
Score = 34.6 bits (79), Expect = 0.012
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 397 DIYSRLLRERIICVMGPV 414
+Y RLL ERII + V
Sbjct: 5 SVYERLLSERIIFLGSEV 22
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 116 bits (291), Expect = 6e-31
Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 59/213 (27%)
Query: 57 ERAYDIYSRLLRERIICVMGPIDDSLSSVVVAQLLFLQSESSKKPIHMYINSPGGSVTSG 116
+ D+ ++RII + I+ + +++QLL+L + + I +YINSPGGS+ G
Sbjct: 6 DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEG 64
Query: 117 LGIYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQVGLG 176
L I D Y+ I T G SMAS++LA+G+KG R SLPN RIMIHQP
Sbjct: 65 LAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPL-------- 116
Query: 177 IYDTMQYVLPPIATWCVGQACSMASLLLAAGEKGMRHSLPNSRIMIHQPSGGVQGQATDI 236
G DI
Sbjct: 117 -------------GNAFGHPQ-------------------------------------DI 126
Query: 237 QIQAEEIINLKKQINGLYVKHTGLSIEKIGKST 269
+IQ +EI+ LKK + T ++E I K +
Sbjct: 127 EIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS 159
Score = 35.8 bits (82), Expect = 0.005
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 393 ERAYDIYSRLLRERIICVMGPV 414
+ D+ ++RII + +
Sbjct: 6 DMKKDVKLFFFKKRIIYLTDEI 27
>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase Erbb-3
Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.5 bits (55), Expect = 6.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 408 ICVMGPVSLYPITHSFANDSICKCCH 433
+CV L FA+++ C CH
Sbjct: 30 VCVTHCNFLNGEPREFAHEAECFSCH 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.423
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,795,303
Number of extensions: 83457
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 21
Length of query: 486
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,185,626
Effective search space: 470693522
Effective search space used: 470693522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)