BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy18235
         (232 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4KGQ4|DEGPL_PSEF5 Probable periplasmic serine endoprotease DegP-like OS=Pseudomonas
           fluorescens (strain Pf-5 / ATCC BAA-477) GN=mucD PE=1
           SV=1
          Length = 476

 Score = 32.7 bits (73), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 17  EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHILFI 76
           + DE++V + +  +L   LIGT   S+V  LK   GK +PVL   ++  D    + ++ I
Sbjct: 120 DADEILVRLADRSELKAKLIGTDPRSDVALLKI-DGKDLPVLKLGKSQ-DLKAGQWVVAI 177

Query: 77  RAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIR 111
            +  G D T     QG V A+   + N + +P+I+
Sbjct: 178 GSPFGFDHT---VTQGIVSAIGRSLPNENYVPFIQ 209


>sp|C3K7J3|Y1319_PSEFS UPF0225 protein PFLU_1319 OS=Pseudomonas fluorescens (strain SBW25)
           GN=PFLU_1319 PE=3 SV=1
          Length = 156

 Score = 31.2 bits (69), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 142 TSLNKLRYKSYVTSALKVTSYIAA--LPPTESAASQHALNKFYQVQQWLGKNVPPTE 196
           T+L + RY +YV   L +  Y+ A  LP  ++   +HA+  +     WLG  V  +E
Sbjct: 31  TALMRSRYSAYV---LGLVDYLVATTLPAQQAGLDRHAIGAWSAQSTWLGLEVESSE 84


>sp|Q7QEI1|RTEL1_ANOGA Regulator of telomere elongation helicase 1 homolog OS=Anopheles
           gambiae GN=AGAP000634 PE=3 SV=5
          Length = 991

 Score = 30.8 bits (68), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 115 DPASTTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSYIAALPPT--ESA 172
           +PA   +E    G+RF   + GG   T +  K R   Y+  ++KV  +  +      ++ 
Sbjct: 772 EPAEAAKEEPGKGKRFATAVKGGGINTFA-EKFRLSEYLPDSMKVNPHSRSTKSAGDDAE 830

Query: 173 ASQHALNKFYQVQQWLGKNVPPT 195
           A    L   Y+ ++  GK  PP+
Sbjct: 831 AGGSGLVTLYKRERNDGKGPPPS 853


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,030,628
Number of Sequences: 539616
Number of extensions: 3398519
Number of successful extensions: 8452
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8452
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)