Query psy18235
Match_columns 232
No_of_seqs 97 out of 99
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 17:09:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy18235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/18235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a76_A Flap endonuclease-1 pro 95.1 0.0084 2.9E-07 53.8 2.5 85 19-110 164-251 (326)
2 1ul1_X Flap endonuclease-1; pr 94.9 0.0057 1.9E-07 56.2 0.8 91 19-113 169-262 (379)
3 3q8k_A Flap endonuclease 1; he 94.5 0.0092 3.2E-07 54.2 1.0 89 19-113 169-262 (341)
4 2izo_A FEN1, flap structure-sp 94.2 0.0087 3E-07 54.2 0.2 91 18-112 160-263 (346)
5 1rxw_A Flap structure-specific 94.2 0.007 2.4E-07 54.5 -0.5 95 18-113 162-265 (336)
6 1b43_A Protein (FEN-1); nuclea 94.1 0.008 2.7E-07 54.2 -0.2 86 19-110 164-264 (340)
7 3qe9_Y Exonuclease 1; exonucle 93.8 0.043 1.5E-06 50.0 3.8 86 18-111 161-255 (352)
8 1exn_A 5'-exonuclease, 5'-nucl 92.4 0.072 2.5E-06 47.5 3.1 89 17-114 141-234 (290)
9 3ory_A Flap endonuclease 1; hy 92.0 0.029 1E-06 51.4 0.1 91 18-110 177-278 (363)
10 1bgx_T TAQ DNA polymerase; DNA 87.3 0.051 1.8E-06 54.8 -2.5 86 18-113 132-221 (832)
11 2k42_B Espfu; WAsp, GBD, autoi 52.3 5.7 0.00019 24.6 1.3 13 165-177 3-15 (36)
12 2kxc_B ESPF-like protein; IRTK 30.4 19 0.00064 23.7 1.2 18 165-184 1-18 (48)
No 1
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=95.14 E-value=0.0084 Score=53.79 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=57.0
Q ss_pred CceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcCCCcch-hhhhcchhh
Q psy18235 19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTS-ALFNQGKVK 95 (232)
Q Consensus 19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts-~f~gkGK~k 95 (232)
|..+.|+|+|.|++.+..-. .++.-+..|+. ...++.+.+.+. .+ -..++-+=++.|||..+ .+-|.|.++
T Consensus 164 g~~~~I~S~D~Dll~~~~~~-----v~~~~~~~~~~-~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~~p~GvpGiG~kt 237 (326)
T 1a76_A 164 GDVWAVVSQDYDALLYGAPR-----VVRNLTTTKEM-PELIELNEVLEDLRISLDDLIDIAIFMGTDYNPGGVKGIGFKR 237 (326)
T ss_dssp TSSSEEECSSSGGGGGTCSE-----EEESSSSCSSC-CEEEEHHHHHHHHTCCHHHHHHHHHHHCCTTSTTTTTTCCHHH
T ss_pred CCEEEEecCCcccceecCCE-----EEEeecCCCCc-eEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCCCCCCCCcCHHH
Confidence 66778999999999886411 22222222322 233455444431 11 24477788999999999 999999999
Q ss_pred hhhhhccCcChHHHH
Q psy18235 96 ALRTVVKNPDLLPYI 110 (232)
Q Consensus 96 alK~l~~n~~~q~a~ 110 (232)
|.|++++ .++-..+
T Consensus 238 A~kli~~-gsle~i~ 251 (326)
T 1a76_A 238 AYELVRS-GVAKDVL 251 (326)
T ss_dssp HHHHHHH-TCHHHHH
T ss_pred HHHHHHc-CCHHHHH
Confidence 9999998 6665554
No 2
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=94.95 E-value=0.0057 Score=56.21 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=58.5
Q ss_pred CceEEEEeCCcceEEeeeccCCCccceeeec-CCccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcchhh
Q psy18235 19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKP-GRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGKVK 95 (232)
Q Consensus 19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~-g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK~k 95 (232)
+..+.|+|+|.|++.+..-. ...++.+ +.++.....++.+.+.+. .+ -..++-+-+++|||.+..+-|.|-++
T Consensus 169 g~~~~iiS~D~Dll~~g~~~----v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~d~IpGIG~Kt 244 (379)
T 1ul1_X 169 GKVYAAATEDMDCLTFGSPV----LMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGPKR 244 (379)
T ss_dssp TSSSEEECSCTHHHHTTCSE----EEECSSCCC-CCCCEEEEEHHHHHHHHTCCHHHHHHHHHHHHCSSSCCCTTCCHHH
T ss_pred CCeEEEEecCcCccccccce----EEEEecccccCcCCeEEEeHHHHHHHhCCCHHHHHHHHHHhCCCcCCCCCCcCHHH
Confidence 45567899999998876421 1112211 122322233444444331 11 13477788999999999999999999
Q ss_pred hhhhhccCcChHHHHHHh
Q psy18235 96 ALRTVVKNPDLLPYIRRF 113 (232)
Q Consensus 96 alK~l~~n~~~q~a~~~f 113 (232)
|+++++++.++-..+..+
T Consensus 245 A~kLl~~~gsle~i~~~~ 262 (379)
T 1ul1_X 245 AVDLIQKHKSIEEIVRRL 262 (379)
T ss_dssp HHHHHHHSSSHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 999999998776665554
No 3
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=94.48 E-value=0.0092 Score=54.23 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=57.1
Q ss_pred CceEEEEeCCcceEEeeeccCCCccceeee--cC-CccccceEeccccccch-hh-HhHHHhhhhhcCCCcchhhhhcch
Q psy18235 19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLK--PG-RGKVVPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSALFNQGK 93 (232)
Q Consensus 19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~--~g-~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f~gkGK 93 (232)
|...+|+|+|.|++++..- .++.. +. .++.....++...+.+. .+ -..++-+=+++|||.+..+-|.|.
T Consensus 169 g~v~~i~s~D~D~l~~~~~------~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~~gipGiG~ 242 (341)
T 3q8k_A 169 GKVYAAATEDMDCLTFGSP------VLMRHLTASEAKKLPIQEFHLSRILQELGLNQEQFVDLCILLGSDYCESIRGIGP 242 (341)
T ss_dssp TSSSEEECSCTHHHHTTCS------EEEESCCCCSSCCCEEEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSSCCCTTCCH
T ss_pred CCeEEEEcCCccccccCCc------EEEEcccccccCCCceEEEcHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCCccH
Confidence 5556678999999988641 22221 21 11222233444444331 11 134677889999999999999999
Q ss_pred hhhhhhhccCcChHHHHHHh
Q psy18235 94 VKALRTVVKNPDLLPYIRRF 113 (232)
Q Consensus 94 ~kalK~l~~n~~~q~a~~~f 113 (232)
++|+|+++++.++-..+..+
T Consensus 243 KtA~kll~~~gsle~i~~~~ 262 (341)
T 3q8k_A 243 KRAVDLIQKHKSIEEIVRRL 262 (341)
T ss_dssp HHHHHHHHHHCSHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 99999999887765555544
No 4
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=94.24 E-value=0.0087 Score=54.21 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCceEEEEeCCcceEEeeeccCCCccceee-ecCCccc---------cceEeccccccch-hh-HhHHHhhhhhcCCCcc
Q psy18235 18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFL-KPGRGKV---------VPVLYHPQTTIDT-SL-AEHILFIRAISGCDST 85 (232)
Q Consensus 18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~-~~g~g~~---------~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtt 85 (232)
.|..+.|+|+|.|++.+..-. ..+++ ..|.++. ....++...+.+. .+ -..++-+-+++|||..
T Consensus 160 ~g~~~~I~S~D~D~l~~~~~~----v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~D~~ 235 (346)
T 2izo_A 160 LGLSWAAASQDYDAILFGAKR----LVRNLTITGKRKLPNKDVYVEIKPELIETEILLKKLGITREQLIDIGILIGTDYN 235 (346)
T ss_dssp TTSSSEEECSSSHHHHTTCSE----EEESSCC-----------CCCCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCCSSS
T ss_pred CCCeEEEECCCCCcceecCCe----EEEEecccccccCcccccccccceEEEEHHHHHHHcCCCHHHHHHHHHHcCCCCC
Confidence 467788999999999776421 11111 1122110 1122333333321 11 1447778899999999
Q ss_pred h-hhhhcchhhhhhhhccCcChHHHHHH
Q psy18235 86 S-ALFNQGKVKALRTVVKNPDLLPYIRR 112 (232)
Q Consensus 86 s-~f~gkGK~kalK~l~~n~~~q~a~~~ 112 (232)
+ .+-|.|-++|+|+++++.++...+..
T Consensus 236 p~Gv~GIG~KtA~kLi~~~gsle~i~~~ 263 (346)
T 2izo_A 236 PDGIRGIGPERALKIIKKYGKIEKAMEY 263 (346)
T ss_dssp TTCSTTCCHHHHHHHHHHSSCC------
T ss_pred CCCCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 9 99999999999999998766554444
No 5
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=94.17 E-value=0.007 Score=54.51 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=57.9
Q ss_pred CCceEEEEeCCcceEEeeeccCCCccceee----ecCCccc---cceEeccccccch-hh-HhHHHhhhhhcCCCcchhh
Q psy18235 18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFL----KPGRGKV---VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTSAL 88 (232)
Q Consensus 18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~----~~g~g~~---~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts~f 88 (232)
.|..+.|+|+|.|++.+..-.. +...-+. .+++|.. ....++.+.+.+. .+ -..++-+-++.|||..+..
T Consensus 162 ~g~~~~I~S~D~Dllql~~~~v-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsD~ipGv 240 (336)
T 1rxw_A 162 KGDVEYTGSQDYDSLLFGSPRL-ARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGV 240 (336)
T ss_dssp TTSSSEEECSSSHHHHTTCSEE-EESCCC-------------CCCCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBCCC
T ss_pred cCCeeEEEcCCCCcceecCCeE-EEeccccccccCCccccccccceEEeEHHHHHHHcCCCHHHHHHHHhhcCCCCCCCC
Confidence 4677889999999998764211 0000011 1222210 1122333333321 11 2447788899999999999
Q ss_pred hhcchhhhhhhhccCcChHHHHHHh
Q psy18235 89 FNQGKVKALRTVVKNPDLLPYIRRF 113 (232)
Q Consensus 89 ~gkGK~kalK~l~~n~~~q~a~~~f 113 (232)
-|.|-++|.|+++++.++-..+..+
T Consensus 241 ~GiG~KtA~kLl~~~gsle~i~~~~ 265 (336)
T 1rxw_A 241 KGVGVKKALNYIKTYGDIFRALKAL 265 (336)
T ss_dssp TTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred CCcCHHHHHHHHHHcCCHHHHHHhC
Confidence 9999999999999987776665554
No 6
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=94.15 E-value=0.008 Score=54.22 Aligned_cols=86 Identities=22% Similarity=0.215 Sum_probs=54.4
Q ss_pred CceEEEEeCCcceEEeeeccCCCccceeeec-CCccc-----------cceEeccccccch-hh-HhHHHhhhhhcCCCc
Q psy18235 19 DEVVVLVGEDVDLLVILIGTRSPSNVYFLKP-GRGKV-----------VPVLYHPQTTIDT-SL-AEHILFIRAISGCDS 84 (232)
Q Consensus 19 ~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~-g~g~~-----------~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDt 84 (232)
|..+.|+|+|.|++++..- .+.... ..|+. ....++.+.+.+. .+ -..++-+=+++|||.
T Consensus 164 g~~~~i~S~D~D~l~~g~~------~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~G~Dy 237 (340)
T 1b43_A 164 GSVYASASQDYDSLLFGAP------RLVRNLTITGKRKLPGKNVYVEIKPELIILEEVLKELKLTREKLIELAILVGTDY 237 (340)
T ss_dssp TSSSEEECSSSHHHHTTCS------EEEESTTTCEEEECTTSSCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCCTT
T ss_pred CCEEEEEccCCCcceecCc------EEEEEeccCCCccCcccccccccceeEEEHHHHHHHhCCCHHHHHHHHHhcCCCC
Confidence 5567789999999877542 111111 11211 1112333333321 11 134777889999999
Q ss_pred ch-hhhhcchhhhhhhhccCcChHHHH
Q psy18235 85 TS-ALFNQGKVKALRTVVKNPDLLPYI 110 (232)
Q Consensus 85 ts-~f~gkGK~kalK~l~~n~~~q~a~ 110 (232)
++ .+-|.|-++|+|+++++.++...+
T Consensus 238 ~p~gv~GiG~ktA~kli~~~gsle~il 264 (340)
T 1b43_A 238 NPGGIKGIGLKKALEIVRHSKDPLAKF 264 (340)
T ss_dssp STTCSTTCCHHHHHHHHHTCSSGGGGT
T ss_pred CCCCCCCccHHHHHHHHHHcCCHHHHH
Confidence 99 999999999999999987665443
No 7
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=93.75 E-value=0.043 Score=50.05 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=53.4
Q ss_pred CCceEEEEeCCcceEEeeeccCCCccceeeecCC-ccccceEeccccc--cc---hhhH-hHHHhhhhhcCCCcchhhhh
Q psy18235 18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGR-GKVVPVLYHPQTT--ID---TSLA-EHILFIRAISGCDSTSALFN 90 (232)
Q Consensus 18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~-g~~~~~i~~i~~~--~~---~~~~-~~l~~~ha~tgcDtts~f~g 90 (232)
.|..+.|+|+|.|++.+..- .+.+.... |+. .. ++...+ .+ ..+. ..+.-+=+++|||..+.+-|
T Consensus 161 ~g~~~~I~S~D~Dll~~~~~------~v~~~~~~~~~~-~~-~~~~~~~~~~~~g~~l~~~q~id~~~L~G~D~~pgv~G 232 (352)
T 3qe9_Y 161 AGIVQAIITEDSALLAFGCK------KVILKMDQFGNG-LE-IDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRG 232 (352)
T ss_dssp TTSCSEEECSCGGGGGGTCS------EEEESCCTTSEE-EE-EEGGGGTTCCTTCSSCCHHHHHHHHHHHCCSSSCCCTT
T ss_pred CCCeEEEEeCCcCcccccCC------eEEEeccCCCCc-EE-EeHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCCCCC
Confidence 46777899999999876642 11112211 111 11 222221 11 0121 34677788999999999999
Q ss_pred cchhhhhhhhccC--cChHHHHH
Q psy18235 91 QGKVKALRTVVKN--PDLLPYIR 111 (232)
Q Consensus 91 kGK~kalK~l~~n--~~~q~a~~ 111 (232)
.|.++|+|+++++ .++-..+.
T Consensus 233 iG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 233 IGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCHHHHHHHHHHCCCSCHHHHHT
T ss_pred eeHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999987 45544443
No 8
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=92.41 E-value=0.072 Score=47.51 Aligned_cols=89 Identities=18% Similarity=0.218 Sum_probs=60.2
Q ss_pred cCCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hhH--hHHHhhhhhcC--CCcchhhhhc
Q psy18235 17 EEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SLA--EHILFIRAISG--CDSTSALFNQ 91 (232)
Q Consensus 17 ~~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~~--~~l~~~ha~tg--cDtts~f~gk 91 (232)
.+|..|+|+|.|-|++-|.-- .+.+..++ ....++...+.++ .+. ..+.-+-++.| ||..+..-|+
T Consensus 141 ~~G~~v~IvS~DkDl~Qlv~~-----~v~v~~~~----~~~~~~~~~v~ek~Gv~p~~q~iD~~~L~GD~sDniPGVpGI 211 (290)
T 1exn_A 141 HLYDHVWLISTDGDWDTLLTD-----KVSRFSFT----TRREYHLRDMYEHHNVDDVEQFISLKAIMGDLGDNIRGVEGI 211 (290)
T ss_dssp GGSSCEEEECSCGGGGGGCCS-----SEEEEETT----TTEEECGGGHHHHHSSSSHHHHHHHHHHHCBGGGTBCCCTTC
T ss_pred HCCCcEEEEeCCCChhhcCCC-----CEEEEECC----CCEEEcHHHHHHHcCCCHHHHHHHHHHhcCCCcCCCCCCCcC
Confidence 347789999999998876631 12222333 1233455444431 111 24667889999 9999999999
Q ss_pred chhhhhhhhccCcChHHHHHHhc
Q psy18235 92 GKVKALRTVVKNPDLLPYIRRFL 114 (232)
Q Consensus 92 GK~kalK~l~~n~~~q~a~~~f~ 114 (232)
|.++|.|+++++.++-..+....
T Consensus 212 G~KTA~kLL~~~gsle~i~~~~~ 234 (290)
T 1exn_A 212 GAKRGYNIIREFGNVLDIIDQLP 234 (290)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHCS
T ss_pred CHhHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998877766666653
No 9
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=92.02 E-value=0.029 Score=51.41 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=55.1
Q ss_pred CCceEEEEeCCcceEEeeeccCCCcccee-----eecCCccc---cceEeccccccch-hh-HhHHHhhhhhcCCCcch-
Q psy18235 18 EDEVVVLVGEDVDLLVILIGTRSPSNVYF-----LKPGRGKV---VPVLYHPQTTIDT-SL-AEHILFIRAISGCDSTS- 86 (232)
Q Consensus 18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~-----~~~g~g~~---~~~i~~i~~~~~~-~~-~~~l~~~ha~tgcDtts- 86 (232)
.|..+.|+|+|.|++.+..-.. .-.+. ..|++|.. ....++...+.+. .+ -..++-+=++.|||..+
T Consensus 177 ~g~~~~I~S~D~D~l~fg~~~v--~~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~gl~~~q~id~~~L~GsDy~p~ 254 (363)
T 3ory_A 177 KGDAYASASQDYDSLLFGSPKL--VRNLTISGRRKLPRKNEYVEVKPELIELDKLLVQLGITLENLIDIGILLGTDYNPD 254 (363)
T ss_dssp TTSCSEEECSSSHHHHTTCSEE--EESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHHTCCHHHHHHHHHHHCBTTBTT
T ss_pred CCCeEEEECCCcCccccCCCeE--EEEeeccccccCCccccccccceEEEcHHHHHHHhCcCHHHHHHHHHHhCCCCCCC
Confidence 4677889999999998764210 00000 01222211 1122344333331 11 23467788999999889
Q ss_pred hhhhcchhhhhhhhccCcChHHHH
Q psy18235 87 ALFNQGKVKALRTVVKNPDLLPYI 110 (232)
Q Consensus 87 ~f~gkGK~kalK~l~~n~~~q~a~ 110 (232)
..-|.|.++|+|+++++.++-..+
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il 278 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIP 278 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSC
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHH
Confidence 999999999999998875544433
No 10
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=87.26 E-value=0.051 Score=54.85 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=57.1
Q ss_pred CCceEEEEeCCcceEEeeeccCCCccceeeecCCccccceEeccccccch-hh-HhHHHhhhhhcC--CCcchhhhhcch
Q psy18235 18 EDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDT-SL-AEHILFIRAISG--CDSTSALFNQGK 93 (232)
Q Consensus 18 ~~~~~vv~~~DTDvlVl~~~~~~~~~~~~~~~g~g~~~~~i~~i~~~~~~-~~-~~~l~~~ha~tg--cDtts~f~gkGK 93 (232)
.|..++|+|+|.|++.+.-- .+.+..+ +| ..++...+.+. .+ -..++-+-++.| ||..+..-|+|.
T Consensus 132 ~G~~v~IvS~DkDllql~~~-----~v~~~~~-~g----~~~~~~~v~~~~gv~p~q~id~~~L~GD~sDnipGVpGIG~ 201 (832)
T 1bgx_T 132 EGYEVRILTADKDLYQLLSD-----RIHVLHP-EG----YLITPAWLWEKYGLRPDQWADYRALTGDESDNLPGVKGIGE 201 (832)
T ss_dssp HTCCBCCCCSSTTCCTTCCT-----TBCBCCS-SS----CCBCSTTHHHHTCCCGGGTTTTTTSSCCSSSCCCCCCCSSS
T ss_pred cCCeEEEEeCCCChhhcCcC-----CEEEEeC-CC----cEEcHHHHHHHHCcCHHHHHHHHHhcCCccccCCCCCCcCc
Confidence 46678899999999887531 1222223 44 12344433321 01 134677889999 999999999999
Q ss_pred hhhhhhhccCcChHHHHHHh
Q psy18235 94 VKALRTVVKNPDLLPYIRRF 113 (232)
Q Consensus 94 ~kalK~l~~n~~~q~a~~~f 113 (232)
++|.|+++++.++-..+..+
T Consensus 202 KtA~kLl~~~gsle~i~~~~ 221 (832)
T 1bgx_T 202 KTARKLLEEWGSLEALLKNL 221 (832)
T ss_dssp CTTTTTGGGTTSSCSSSSSC
T ss_pred hHHHHHHHHCCCHHHHHHHH
Confidence 99999999986665544443
No 11
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=52.27 E-value=5.7 Score=24.57 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=12.3
Q ss_pred cCCCchHHHHHHH
Q psy18235 165 ALPPTESAASQHA 177 (232)
Q Consensus 165 ~LPPt~~al~qH~ 177 (232)
.|||...||++|+
T Consensus 3 ~LPpIAQaLk~HL 15 (36)
T 2k42_B 3 MLPDVAQRLMQHL 15 (36)
T ss_dssp CCSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 6999999999998
No 12
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=30.37 E-value=19 Score=23.65 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.2
Q ss_pred cCCCchHHHHHHHHHhhhhh
Q psy18235 165 ALPPTESAASQHALNKFYQV 184 (232)
Q Consensus 165 ~LPPt~~al~qH~~R~~yQ~ 184 (232)
.|||...||++|+ +.|-.
T Consensus 1 ~LPpiaQaLk~HL--AAye~ 18 (48)
T 2kxc_B 1 GLPDVAQRLMQHL--AEHGI 18 (48)
T ss_pred CCccHHHHHHHHH--HHHhh
Confidence 4899999999998 44443
Done!