RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy18235
(232 letters)
>gnl|CDD|223236 COG0158, Fbp, Fructose-1,6-bisphosphatase [Carbohydrate transport
and metabolism].
Length = 326
Score = 34.2 bits (79), Expect = 0.043
Identities = 36/149 (24%), Positives = 49/149 (32%), Gaps = 44/149 (29%)
Query: 12 SLASEEEDEVVVLVGEDVDLLV--------------ILIGT---------RSPSNVYFLK 48
+ASEEEDE V + V + +GT + FL+
Sbjct: 85 GIASEEEDEPVTFPENNGSYAVAYDPLDGSSNIDVNVSVGTIFSIYRRPGSPGTEEDFLQ 144
Query: 49 PGRGKVVP--VLYHPQT-------------TIDTSLAEHILFIRAISGCDSTSAL-FNQG 92
PG +V V+Y P T T+D SL E IL I + N+G
Sbjct: 145 PGNKQVAAGYVVYGPSTMLVYTLGEGVHGFTLDPSLGEFILTHENIRIPEKGKIYAINEG 204
Query: 93 KVKALRTVVKNPDLLPYIRRFLDPASTTR 121
+ VK YI+ TR
Sbjct: 205 NQRHWEEGVKK-----YIKDCFAEDKGTR 228
>gnl|CDD|215854 pfam00316, FBPase, Fructose-1-6-bisphosphatase.
Length = 325
Score = 31.9 bits (73), Expect = 0.20
Identities = 39/153 (25%), Positives = 54/153 (35%), Gaps = 50/153 (32%)
Query: 13 LASEEEDEVVVLVGEDVDLLVILI---------------GT----------RSPSNVYFL 47
LASEE+DE+VVL G + + GT SP+ + FL
Sbjct: 84 LASEEQDELVVLEGNEEGKYAVAFDPLDGSSNIDTNVSVGTIFSIYPRVSGDSPTTIDFL 143
Query: 48 KPGRGKVVP--VLYHPQT-------------TIDTSLAEHILFIRAISGCDSTSALFNQG 92
+PGR +V V+Y P T T+D L E IL D T + +G
Sbjct: 144 QPGREQVAAGYVIYGPSTMLVLTLGCGVHGFTLDPDLGEFIL-------VDETVKIPEEG 196
Query: 93 K---VKALRTVVKNPDLLPYIRRFLDPASTTRE 122
K + +P + YI R
Sbjct: 197 KIFSINEGNYRHWDPPVRKYIDDCKAGDDGPRR 229
>gnl|CDD|223055 PHA03361, PHA03361, UL7 tegument protein; Provisional.
Length = 302
Score = 30.3 bits (69), Expect = 0.63
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 57 VLYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFL 114
VL+ P+ +D +L +++ +T++LF Q LR + L +RR L
Sbjct: 135 VLFRPEDLLDFALCLLQMYLENCPRSRATASLFVQLSA-FLRRAWRRITPLDKMRRLL 191
>gnl|CDD|218750 pfam05789, Baculo_VP1054, Baculovirus VP1054 protein. This family
consists of several VP1054 proteins from the
Baculoviruses. VP1054 is a virus structural protein
required for nucleocapsid assembly.
Length = 314
Score = 29.9 bits (68), Expect = 0.92
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 16/92 (17%)
Query: 59 YHPQ---------TTIDTSLAEHILFIRAISGCDSTSALF------NQGKVKALRTVVKN 103
HP +D + H I + D + + + +
Sbjct: 25 IHPLRANCRLIKTKNLDKTFYLHYTVIDSRY-LDYNGEPYYEWLLPSDEDRETRGRYLNA 83
Query: 104 PDLLPYIRRFLDPASTTREITEAGERFLVVLY 135
+++ Y++ D + I EAGER + VL
Sbjct: 84 TEMICYVQLKPDDDEKFKGIDEAGERNMSVLR 115
>gnl|CDD|236458 PRK09293, PRK09293, fructose-1,6-bisphosphatase; Provisional.
Length = 327
Score = 29.8 bits (68), Expect = 1.1
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 38/107 (35%)
Query: 11 RSLASEEEDEVVVLVGEDVDLLV--------------ILIGT-----RSPSNVY----FL 47
LASEEEDE+V + + LV + +GT R+P FL
Sbjct: 85 AGLASEEEDEIVPIPENEGKYLVAYDPLDGSSNIDVNVSVGTIFSIYRAPVGTPTEEDFL 144
Query: 48 KPGRGKV--VPVLYHPQT-------------TIDTSLAEHILFIRAI 79
+PG +V VLY P T T+D SL E +L I
Sbjct: 145 QPGNNQVAAGYVLYGPSTMLVLTTGDGVHGFTLDPSLGEFVLTHENI 191
>gnl|CDD|233504 TIGR01644, phage_P2_V, phage baseplate assembly protein V. This
model describes a family of phage (and bacteriocin)
proteins related to the phage P2 V gene product, which
forms the small spike at the tip of the tail. Homologs
in general are annotated as baseplate assembly protein
V. At least one member is encoded within a region of
Pectobacterium carotovorum (Erwinia carotovora)
described as a bacteriocin, a phage tail-derived module
able to kill bacteria closely related to the host strain
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 190
Score = 28.9 bits (65), Expect = 1.9
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 23/115 (20%)
Query: 2 HYRVPSSGRRSLASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHP 61
+ PS G E +V+ G +D V+L G S F P V Y
Sbjct: 48 TWSAPSVG--------EQVLVLSPGGQLDTGVVLPGVYSDD---FRPPSLSAGDTVTYFA 96
Query: 62 ---QTTIDTSLAEHILFIRAISGC-----DSTSALFNQGKVKA--LRTVVKNPDL 106
+ D A H L + I D T+ + ++ T +K P+
Sbjct: 97 DGARIEYDK--AAHALTVCGIKTVYLDAGDGTTVTVDAPQITFTGGVTTLKGPET 149
>gnl|CDD|238214 cd00354, FBPase, Fructose-1,6-bisphosphatase, an enzyme that
catalyzes the hydrolysis of fructose-1,6-biphosphate
into fructose-6-phosphate and is critical in
gluconeogenesis pathway. The alignment model also
includes chloroplastic FBPases and
sedoheptulose-1,7-biphosphatases that play a role in
pentose phosphate pathway (Calvin cycle).
Length = 315
Score = 27.9 bits (63), Expect = 4.0
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 28/86 (32%)
Query: 7 SSGR-RSLASEEEDEVVVLVGEDVDLLVIL---------------IGT----------RS 40
SSG LASEEE+E V + ++ +GT
Sbjct: 71 SSGVVAVLASEEEEEPVPVEESKDGKYLVAFDPLDGSSNIDANVSVGTIFSIYPGPSGAD 130
Query: 41 PSNVYFLKPGRGKV--VPVLYHPQTT 64
+ FL+PGR +V LY P T
Sbjct: 131 ATEKDFLQPGRNQVAAGYALYGPSTM 156
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular
trafficking and secretion].
Length = 526
Score = 27.9 bits (62), Expect = 4.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 52 GKVVPVLYHPQTTIDTSLAEHILFIRAISGCD-STSALFNQGKVKALRTVVKNP 104
G++V +L H I T + I ++G D T + N G +KA R+++ +P
Sbjct: 288 GRLVELLSHESAKIQTPALRSVGNI--VTGSDDQTQVIINCGALKAFRSLLSSP 339
>gnl|CDD|173104 PRK14641, PRK14641, hypothetical protein; Provisional.
Length = 173
Score = 27.4 bits (61), Expect = 5.3
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 16 EEEDEVVVLVGEDVDLLV 33
EE++E++ LVGED DL+V
Sbjct: 67 EEDEELLGLVGEDFDLMV 84
>gnl|CDD|133086 cd06228, M14-like_3, Peptidase M14-like domain; uncharacterized
subfamily. A functionally uncharacterized subgroup of
the M14 family of metallocarboxypeptidases (MCPs). The
M14 family are zinc-binding carboxypeptidases (CPs)
which hydrolyze single, C-terminal amino acids from
polypeptide chains, and have a recognition site for the
free C-terminal carboxyl group, which is a key
determinant of specificity. Two major subfamilies of the
M14 family, defined based on sequence and structural
homology, are the A/B and N/E subfamilies. Enzymes
belonging to the A/B subfamily are normally synthesized
as inactive precursors containing preceding signal
peptide, followed by an N-terminal pro-region linked to
the enzyme; these proenzymes are called
procarboxypeptidases. The A/B enzymes can be further
divided based on their substrate specificity;
Carboxypeptidase A-like (CPA-like) enzymes favor
hydrophobic residues while carboxypeptidase B-like
(CPB-like) enzymes only cleave the basic residues lysine
or arginine. The A forms have slightly different
specificities, with Carboxypeptidase A1 (CPA1)
preferring aliphatic and small aromatic residues, and
CPA2 preferring the bulky aromatic side chains. Enzymes
belonging to the N/E subfamily enzymes are not produced
as inactive precursors and instead rely on their
substrate specificity and subcellular
compartmentalization to prevent inappropriate cleavages.
They contain an extra C-terminal transthyretin-like
domain, thought to be involved in folding or formation
of oligomers. MCPs can also be classified based on
their involvement in specific physiological processes;
the pancreatic MCPs participate only in alimentary
digestion and include carboxypeptidase A and B (A/B
subfamily), while others, namely regulatory MCPs or the
N/E subfamily, are involved in more selective reactions,
mainly in non-digestive tissues and fluids, acting on
blood coagulation/fibrinolysis, inflammation and local
anaphylaxis, pro-hormone and neuropeptide processing,
cellular response and others. Another MCP subfamily,
is that of succinylglutamate desuccinylase
/aspartoacylase, which hydrolyzes N-acetyl-L-aspartate
(NAA), and deficiency in which is the established cause
of Canavan disease. Another subfamily (referred to as
subfamily C) includes an exceptional type of activity in
the MCP family, that of dipeptidyl-peptidase activity of
gamma-glutamyl-(L)-meso-diaminopimelate peptidase I
which is involved in bacterial cell wall metabolism.
Length = 332
Score = 27.4 bits (61), Expect = 6.4
Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 98 RTVVKNPDLLPYIRRFLDPASTTREI-----------TEAGERFLVVLYGGNHETTSLNK 146
R VV D IR F+D S ++ T F+ Y G +
Sbjct: 170 RNVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPD 229
Query: 147 LRYKSYVTSA-LKVTSYIAALPPTESAASQHALNKFYQVQQWLG 189
RY Y+ S +AA A A + Y V Q +G
Sbjct: 230 TRYGEYIDSDDWDAAVNLAA---RMGLAMAAARGRIYTVSQSVG 270
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 27.5 bits (61), Expect = 7.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 187 WLGKNVPPTEWGWNQVGNTLIPIT 210
L +NVP EW +++ +TL+
Sbjct: 643 SLLENVPDQEWSMSKIVSTLVKNK 666
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 27.4 bits (61), Expect = 7.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 121 REITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKV 159
+++ G++ VVL GGN + LNK+ K V S KV
Sbjct: 268 QKVDVKGKKIAVVLSGGNIDLNLLNKIIEKGLVKSGRKV 306
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,817,339
Number of extensions: 1103463
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 937
Number of HSP's successfully gapped: 15
Length of query: 232
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 138
Effective length of database: 6,768,326
Effective search space: 934028988
Effective search space used: 934028988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)