RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy18235
(232 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 38/217 (17%), Positives = 59/217 (27%), Gaps = 74/217 (34%)
Query: 11 RSLASEEEDEVVVLVGEDV-DLLV---------ILIGTRSPSNVYFLKPGRGKVVPVLYH 60
R L + E +LV +V + IL+ TR FL + + +H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 61 PQT-TIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVK--NPDLLPYIRRFLDPA 117
T T D + L ++ + C + + L V NP L I +
Sbjct: 295 SMTLTPDEVKS---LLLKYL-DC----------RPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 118 STTREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALK--VTSYIAALPPTESAASQ 175
T + +K L + S + L P E
Sbjct: 341 LATWD-------------------------NWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 176 HALNKFYQVQQWLGKNVPPTEWGWNQVGNTLIPITTL 212
L+ F PP + IP L
Sbjct: 376 DRLSVF-----------PP---------SAHIPTILL 392
Score = 37.9 bits (87), Expect = 0.002
Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 24/140 (17%)
Query: 3 YRVPSSGRRSLASEEEDEVVVLVGEDVDLLVILIGT--RSPSNVY--FLKPGRGKVVPVL 58
V + L+ EE D +++ + V + L T + F++ L
Sbjct: 36 KDVQDMPKSILSKEEIDHIIM-SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94
Query: 59 YHP--QTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPDLLPYIRRFLDP 116
P S+ ++I + L+N +V A V + +R+ L
Sbjct: 95 MSPIKTEQRQPSM-MTRMYI------EQRDRLYNDNQVFAKYNVSR-LQPYLKLRQAL-- 144
Query: 117 ASTTREITEAGERFLVVLYG 136
E+ A V++ G
Sbjct: 145 ----LELRPAK---NVLIDG 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.26
Identities = 33/180 (18%), Positives = 58/180 (32%), Gaps = 54/180 (30%)
Query: 2 HYRVPSSGRRSLASEEEDE--------VVVLVGEDVDLLVILIGTRSPSN--VYF-LKPG 50
+ +P S S E +E + L E V V + P+ V L G
Sbjct: 316 NTSLPPSILED--SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 51 RGKVV----PV-LYHPQTTIDTSLAEHILFIRAISGCDSTSALFNQGKVKALRTVVKNPD 105
+V P LY L + +A SG D + F++ K+K
Sbjct: 374 AKNLVVSGPPQSLYG--------LNLTLRKAKAPSGLDQSRIPFSERKLK---------- 415
Query: 106 LLPYIRRFLDPAST---TREITEAGERFLVVLYGGNHETTSLNKLRYKSYVTSALKVTSY 162
+ RFL P ++ + + A + L N + + + +++ Y
Sbjct: 416 ---FSNRFL-PVASPFHSHLLVPASDLINKDLVKNN--------VSFNA---KDIQIPVY 460
>1nuw_A Fructose-1,6-bisphosphatase; allosteric enzymes, gluconeogenesis,
hydrola; HET: F6P; 1.30A {Sus scrofa} SCOP: e.7.1.1 PDB:
1eyi_A* 1eyj_A* 1cnq_A* 1eyk_A* 1nux_A* 1nuy_A* 1nuz_A*
1nv0_A* 1nv1_A* 1nv2_A* 1nv3_A* 1nv4_A* 1nv5_A* 1nv6_A*
1nv7_A* 1q9d_A* 2qvu_A* 2qvv_A* 1fj6_A* 1fj9_A* ...
Length = 337
Score = 29.5 bits (67), Expect = 0.73
Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 28/87 (32%)
Query: 7 SSGR-RSLASEEEDEVVVLVGEDVDLLVIL---------------IGT----------RS 40
SS L SEE+ +++ E V+ IGT
Sbjct: 87 SSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSIGTIFGIYRKNSTDE 146
Query: 41 PSNVYFLKPGRGKVVP--VLYHPQTTI 65
PS L+PGR V LY T +
Sbjct: 147 PSEKDALQPGRNLVAAGYALYGSATML 173
>2fhy_A Fructose-1,6-bisphosphatase 1; allosteric inhibitors human fbpase,
benzoxazole, intersubunit allosteric inhibition of human
fpbase, hydrolase; HET: A37; 2.95A {Homo sapiens}
Length = 374
Score = 28.8 bits (65), Expect = 1.4
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 27/86 (31%)
Query: 7 SSGRRSLASEEEDEVVVLVGEDVDLLVIL---------------IGT----------RSP 41
S L SEE+ +++ E V+ +GT P
Sbjct: 125 SFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPLDGSSNIDCLVSVGTIFGIYRKKSTDEP 184
Query: 42 SNVYFLKPGRGKVVP--VLYHPQTTI 65
S L+PGR V LY T +
Sbjct: 185 SEKDALQPGRNLVAAGYALYGSATML 210
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 28.9 bits (65), Expect = 1.4
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 94 VKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGN 138
V+ L ++ ++ Y++RF + +RF VV GG
Sbjct: 36 VRLLSSMASAKEISQYLKRFSQLDA---------KRFAVVKVGGA 71
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET:
ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A
3zzf_A*
Length = 307
Score = 28.3 bits (64), Expect = 2.1
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 107 LPYIRRFLDPASTTREITEAGERFLVVLYGGN 138
Y++ F + + ++F V+ GG
Sbjct: 36 EQYLKYF---------TSVSQQQFAVIKVGGA 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.5
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 2/18 (11%)
Query: 210 TTLKSPAPDS--LLSLVA 225
+LK A DS L++ A
Sbjct: 27 ASLKLYADDSAPALAIKA 44
>2gq1_A Fructose-1,6-bisphosphatase; allosteric activator site, quaternary
conformation, hydrolas; 1.45A {Escherichia coli} PDB:
2owz_A* 2ox3_A* 2q8m_A* 2qvr_A*
Length = 332
Score = 27.6 bits (62), Expect = 3.7
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 30/89 (33%)
Query: 7 SSGR-RSLASEEEDEVVVLVGEDVDLLVIL---------------IGT-----RSPSNVY 45
+ +ASEEEDE+VV G + V+L +GT R + V
Sbjct: 79 ARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVG 138
Query: 46 -------FLKPGRGKVVP--VLYHPQTTI 65
FL+PG +V V+Y T +
Sbjct: 139 TPVTEEDFLQPGNKQVAAGYVVYGSSTML 167
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase,
transferase; HET: COA; 2.67A {Maricaulis maris} PDB:
3s7y_A 3s6h_A*
Length = 460
Score = 27.7 bits (62), Expect = 4.0
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 9/32 (28%)
Query: 107 LPYIRRFLDPASTTREITEAGERFLVVLYGGN 138
Y+ RF ERF V+ GG
Sbjct: 46 REYLHRF---------SGIDQERFAVIKVGGA 68
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis,
amino acid kinase domain GCN5-related acetyltransferase,
GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB:
3zzi_A*
Length = 464
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 9/32 (28%)
Query: 107 LPYIRRFLDPASTTREITEAGERFLVVLYGGN 138
Y++ F + + ++F V+ GG
Sbjct: 36 EQYLKYF---------TSVSQQQFAVIKVGGA 58
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 26.9 bits (59), Expect = 6.0
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 103 NPDLLPYIRRFLDPASTTREITEAG 127
P + IR + P + + +
Sbjct: 186 APSDVANIRTLITPDTLAQIAHDNT 210
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3
turn-helix, hydrophobic wedge, 3' FLA site,
hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus}
SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Length = 336
Score = 26.7 bits (59), Expect = 6.5
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 11/94 (11%)
Query: 44 VYFLKPGRGKVVPVLYHPQTTIDTSLAEHIL---------FIR-AI-SGCDSTSALFNQG 92
G+ K+ + + + E L I AI G D + G
Sbjct: 185 RNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLTREQLIDIAILVGTDYNEGVKGVG 244
Query: 93 KVKALRTVVKNPDLLPYIRRFLDPASTTREITEA 126
KAL + D+ ++ EI
Sbjct: 245 VKKALNYIKTYGDIFRALKALKVNIDHVEEIRNF 278
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 26.6 bits (58), Expect = 7.6
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 15 SEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRG-KVVPVLYHPQTTIDTSLAEHI 73
S + ++ GE+ + + S + + K+ +
Sbjct: 215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Query: 74 LFIRAISGCDS 84
L I + DS
Sbjct: 275 LTISSARVNDS 285
>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2,
oxidoreductase; 1.84A {Ralstonia eutropha} SCOP:
b.82.1.19
Length = 208
Score = 26.2 bits (57), Expect = 8.7
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 95 KALRTVVKNPDLLPYIRRFLDPASTTREI--TEAGERFLVVL 134
L +V D LP P + + ++ ERF +V
Sbjct: 42 ALLARLVARDDWLPDAFAQPHPEYYQQMLLHCDSAERFSIVS 83
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 26.4 bits (59), Expect = 9.0
Identities = 9/49 (18%), Positives = 10/49 (20%), Gaps = 19/49 (38%)
Query: 90 NQGKVKALRTVVKNPDLLPYIRRFLDPASTTREITEAGERFLVVLYGGN 138
V R PYIR+ G V G
Sbjct: 24 PDSFVAHFREA------APYIRQM------------RGTTL-VAGIDGR 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.395
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,546,791
Number of extensions: 207451
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 25
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.8 bits)