RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy18235
         (232 letters)



>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 120

 Score = 26.7 bits (58), Expect = 1.4
 Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 20/122 (16%)

Query: 14  ASEEEDEVVVLVGEDVDLLVILIGTRSPSNVYFLKPGRGKVVPVLYHPQTTIDTSLAEHI 73
           A EEED V+VL   +       +       V F  P  G    +            AE  
Sbjct: 2   APEEEDHVLVLRKSNFAE---ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGS 58

Query: 74  LFIRAISGCD--------------STSALFNQGKVKALRTVV---KNPDLLPYIRRFLDP 116
               A                    T   F  G   + +      +  D++ ++++   P
Sbjct: 59  EIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118

Query: 117 AS 118
           A+
Sbjct: 119 AA 120


>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein
           (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 292

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 152 YVTSALKVTSYIAALPPTESAASQHALNKFYQVQQWLGKNVPP 194
           +  +  +   + + L      AS    N  Y V   L    P 
Sbjct: 187 FHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPA 229


>d1tt8a_ d.190.1.1 (A:) Chorismate lyase {Escherichia coli [TaxId:
           562]}
          Length = 164

 Score = 26.1 bits (57), Expect = 2.6
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 93  KVKALRTVVKNPDLLPYIRRFL-DPASTTREITEAGERFLVVL 134
           +++ALR   + P L P +  +L    S T+   + G+   V +
Sbjct: 7   QLRALRYSKEIPALDPQLLDWLLLEDSMTKRFEQQGKTVSVTM 49


>d1kfwa1 c.1.8.5 (A:10-327,A:389-444) Psychrophilic chitinase B
           {Arthrobacter sp., tad20 [TaxId: 1667]}
          Length = 374

 Score = 25.6 bits (55), Expect = 5.9
 Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 158 KVTSYIAAL--PPTESAASQHALNKFYQVQQWLGKNVPP 194
            +T + A L   P +  A     +    V+++L   + P
Sbjct: 271 TLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDP 309


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,583
Number of extensions: 38689
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)