BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy18237
(1050 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 86/183 (46%), Gaps = 33/183 (18%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLD 635
D++EC + C +G C N GS+ C+C + L C V+ R CYLD
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC--------VDTRSGNCYLD 52
Query: 636 TXXXXXXXXXXXXXXXXXSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEH 695
+ C+ EI ++++CCCS+GKAWG CE CPAV + E+
Sbjct: 53 IRPRGD------------NGDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEY 100
Query: 696 KTLCPGGSGYRPNSAT-----------REGICPSPGKCQNVMGSFICTCPPGYRLSPDKN 744
K LCPGG G+RPN T G+C GKC N GSF C CP GY L+ D
Sbjct: 101 KILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 745 SCQ 747
C
Sbjct: 160 VCD 162
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 306 VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYT----- 360
D++EC C G CVN G+Y C CP + L P+ C+D R CYL+
Sbjct: 1 TDVNECLDPTT-CISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 361 -DGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLC 404
D CS + ++ CCCS+G++WG PC+ CP + +Y +LC
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILC 104
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 75/191 (39%), Gaps = 37/191 (19%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
TD++EC + P C +G+C N GS+ C C + LN R CVD + +I G
Sbjct: 1 TDVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGD- 58
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
G C G +S + C C G T C +N E
Sbjct: 59 ---NGDTACSNEIGVGVSKASCC---------------CSLGKAWGTPCEXCPAVNTSE- 99
Query: 980 PQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGS 1039
+ CP P V+LEDI+EC+E +C+ G C NTFGS
Sbjct: 100 ---------------YKILCPGGEGFRP-NPITVILEDIDECQELPGLCQGGKCINTFGS 143
Query: 1040 FMCSCQDGFKL 1050
F C C G+ L
Sbjct: 144 FQCRCPTGYYL 154
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICID---DNECLSIPXXXXXX 822
D+NEC L P+ C G C+NT GSY C+CP + + T C+D N L I
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 823 XXX------XXXXXFECTCSEGYAPG-PLGSCAILLTL---------------PPISPST 860
C CS G A G P C + T P
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLN 895
DIDEC E PG+C G C N GSFQC C GY LN
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 122 TNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLY 181
N +Y +LC G NP+T E+IDEC +P +C G C+NT GSF C+C G+
Sbjct: 95 VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Query: 182 DSDTHQC 188
+ DT C
Sbjct: 155 NEDTRVC 161
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 38/155 (24%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSG--- 204
+++EC L P C G C+NTPGS+ C C F + C+D +I G
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 205 -----------------------TYINECEEMPEI----------CGSGTCENNIGSFSC 231
+ CE P + G G N I +
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPI-TVIL 119
Query: 232 RYINECEEMPEICGSGTCENNIGSFSCRCEDGYSV 266
I+EC+E+P +C G C N GSF CRC GY +
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 19/63 (30%)
Query: 474 MEVTRMDCCCTMGMAWGPQCQLCPTRGSQ-------------------TCEDINECLELS 514
+ V++ CCC++G AWG C+ CP + EDI+EC EL
Sbjct: 70 VGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELP 129
Query: 515 NQC 517
C
Sbjct: 130 GLC 132
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 86/183 (46%), Gaps = 33/183 (18%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLD 635
D++EC + C +G C N GS+ C+C + L C V+ R CYLD
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGC--------VDTRSGNCYLD 52
Query: 636 TXXXXXXXXXXXXXXXXXSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEH 695
+ C+ EI ++++CCCS+GKAWG CE CPAV + E+
Sbjct: 53 IRPRGD------------NGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100
Query: 696 KTLCPGGSGYRPNSAT-----------REGICPSPGKCQNVMGSFICTCPPGYRLSPDKN 744
K LCPGG G+RPN T G+C GKC N GSF C CP GY L+ D
Sbjct: 101 KILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTR 159
Query: 745 SCQ 747
C
Sbjct: 160 VCD 162
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 306 VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYT----- 360
D++EC C G CVN G+Y C CP + L P+ C+D R CYL+
Sbjct: 1 TDVNECLDPTT-CISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 361 -DGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLC 404
D CS + ++ CCCS+G++WG PC+ CP + +Y +LC
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILC 104
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 64/155 (41%), Gaps = 26/155 (16%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICID---DNECLSIPXXXXXX 822
D+NEC L P+ C G C+NT GSY C+CP + + T C+D N L I
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 823 XXX------XXXXXFECTCSEGYAPG-PLGSCAILLTL---------------PPISPST 860
C CS G A G P C + T P
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILE 120
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLN 895
DIDEC E PG+C G C N GSFQC C GY LN
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 122 TNYCDYILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLY 181
N +Y +LC G NP+T E+IDEC +P +C G C+NT GSF C+C G+
Sbjct: 95 VNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Query: 182 DSDTHQC 188
+ DT C
Sbjct: 155 NEDTRVC 161
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 71/164 (43%), Gaps = 25/164 (15%)
Query: 902 VDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNN-DCI----GNC-TDINECESP 955
D++EC P C +G CVN GS+ C C F+L+ C+ GNC DI
Sbjct: 1 TDVNECL-DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRP---- 55
Query: 956 QACLYGNCTNTLGSNCTDINECESPQACLYGNCTNT---------LGSFSCTCPPNYQLT 1006
G+ +T SN + ++ C G T + CP
Sbjct: 56 ----RGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFR 111
Query: 1007 PAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
P V+LEDI+EC+E +C+ G C NTFGSF C C G+ L
Sbjct: 112 P-NPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNG-- 917
TD++EC + P C +G+C N GS+ C C + LN R CVD + +I G
Sbjct: 1 TDVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 918 ---TCVNAIGS--FKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNC--TNTLGSN 970
C N IG K C + C C +N E C G N +
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPC-EMCPAVNTSEYKILCPGGEGFRPNPITVI 118
Query: 971 CTDINEC-ESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
DI+EC E P C G C NT GSF C CP Y L C
Sbjct: 119 LEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 38/155 (24%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSG--- 204
+++EC L P C G C+NTPGS+ C C F + C+D +I G
Sbjct: 2 DVNEC-LDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 205 -----------------------TYINECEEMPEI----------CGSGTCENNIGSFSC 231
+ CE P + G G N I +
Sbjct: 61 DTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPI-TVIL 119
Query: 232 RYINECEEMPEICGSGTCENNIGSFSCRCEDGYSV 266
I+EC+E+P +C G C N GSF CRC GY +
Sbjct: 120 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYL 154
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 19/63 (30%)
Query: 474 MEVTRMDCCCTMGMAWGPQCQLCPTRGSQ-------------------TCEDINECLELS 514
+ V++ CCC++G AWG C++CP + EDI+EC EL
Sbjct: 70 VGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELP 129
Query: 515 NQC 517
C
Sbjct: 130 GLC 132
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLN-TARDSCVDIDECARHPNICNNGTC 919
DIDEC P +C G C N G F+C C GY +C+DIDEC R P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 920 VNAIGSFKCHCYAGFKLSHN 939
N GS++C C G +LS N
Sbjct: 62 HNTEGSYRCECPPGHQLSPN 81
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 26/111 (23%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGN 962
DIDEC P++C G CVN G F+C C G++ + NC DI+EC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMM--MKNCMDIDECQ--------- 50
Query: 963 CTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
P C G C NT GS+ C CPP +QL+P +AC+
Sbjct: 51 ---------------RDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 31/115 (26%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
I+EC P++CG G C N G F C+C++GY M NC
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESG-------------FMMMKNC------ 43
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECI 348
+DIDEC C G C N G+Y C CP G+ L P+ CI
Sbjct: 44 ------------MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSD---THQCIDINECEEMPEICGSG 204
+IDEC + P++C G C+NTPG F C+C+ G Y+S C+DI+EC+ P +C G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEG--YESGFMMMKNCMDIDECQRDPLLCRGG 59
Query: 205 T 205
Sbjct: 60 V 60
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 973 DINECE-SPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLE---DINECEEHDNIC 1028
DI+EC SP C G C NT G F C C Y+ + ++++ DI+EC+ +C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYE-----SGFMMMKNCMDIDECQRDPLLC 56
Query: 1029 ENGHCTNTFGSFMCSCQDGFKL 1050
G C NT GS+ C C G +L
Sbjct: 57 RGGVCHNTEGSYRCECPPGHQL 78
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 190 DINECEEMPEICGSGTYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPEICGSGTC 249
DI+EC P++CG G +N + C G + +C I+EC+ P +C G C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61
Query: 250 ENNIGSFSCRCEDGYSVKP 268
N GS+ C C G+ + P
Sbjct: 62 HNTEGSYRCECPPGHQLSP 80
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 17/88 (19%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQG 779
G+C N G F C C GY G D++EC P C+G
Sbjct: 16 GQCVNTPGDFECKCDEGYE-----------------SGFMMMKNCMDIDECQRDPLLCRG 58
Query: 780 GECINTDGSYRCECPAGYVKDETGKICI 807
G C NT+GSYRCECP G+ CI
Sbjct: 59 GVCHNTEGSYRCECPPGHQLSPNISACI 86
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 50/137 (36%), Gaps = 52/137 (37%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPXXXXXXXXX 825
D++EC + P C G+C+NT G
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGD------------------------------------- 24
Query: 826 XXXXXFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQ 885
FEC C EGY G + + DIDEC P +C G C N +GS++
Sbjct: 25 -----FECKCDEGYESGFMM----------MKNCMDIDECQRDPLLCRGGVCHNTEGSYR 69
Query: 886 CTCANGYTLNTARDSCV 902
C C G+ L+ +C+
Sbjct: 70 CECPPGHQLSPNISACI 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 568 VAVINDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLA 610
++ +C+D+DEC+ LCR G C N GS+ CEC G+ L+
Sbjct: 37 FMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLS 79
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLA-SEGQYCRDVDECKE 624
D+DECR+ LC G+C N G F C+C +GY + C D+DEC+
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQR 51
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 114 DIDECTDNTNYCDYILLCGSKPGEFM----------NPMTNKTEEIDECNLMPNMCNHGT 163
DIDEC + + C C + PG+F M +IDEC P +C G
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 164 CMNTPGSFHCQCNRGFLYDSDTHQCI 189
C NT GS+ C+C G + CI
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNISACI 86
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNECLSIPXXXXXXXXX 825
D++EC P C+ G+CINTDGSYRCECP GY+ G C+D +EC S+
Sbjct: 4 DMDECK-EPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDEC-SVGNPCGNGTCK 59
Query: 826 XXXXXFECTCSEGYAPGPLGSC 847
FECTC EG+ PGP+ +C
Sbjct: 60 NVIGGFECTCEEGFEPGPMMTC 81
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 859 STDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGT 918
+ D+DEC E P +C +G C N GS++C C GY L A + CVD DEC+ N C NGT
Sbjct: 2 AVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVG-NPCGNGT 57
Query: 919 CVNAIGSFKCHCYAGFK 935
C N IG F+C C GF+
Sbjct: 58 CKNVIGGFECTCEEGFE 74
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 972 TDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENG 1031
D++EC+ P C +G C NT GS+ C CP Y L AGN CV D +EC N C NG
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECV---DTDEC-SVGNPCGNG 56
Query: 1032 HCTNTFGSFMCSCQDGFK 1049
C N G F C+C++GF+
Sbjct: 57 TCKNVIGGFECTCEEGFE 74
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 900 SCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACL 959
S VD+DEC + P++C +G C+N GS++C C G+ L+ N C D +EC C
Sbjct: 1 SAVDMDEC-KEPDVCKHGQCINTDGSYRCECPFGYILAGN-----ECVDTDECSVGNPCG 54
Query: 960 YGNCTNTLGS 969
G C N +G
Sbjct: 55 NGTCKNVIGG 64
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 20/84 (23%)
Query: 148 EIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGTYI 207
++DEC P++C HG C+NT GS+ C+C G++ ++C+D +EC
Sbjct: 4 DMDECK-EPDVCKHGQCINTDGSYRCECPFGYILAG--NECVDTDEC------------- 47
Query: 208 NECEEMPEICGSGTCENNIGSFSC 231
+ CG+GTC+N IG F C
Sbjct: 48 ----SVGNPCGNGTCKNVIGGFEC 67
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
Query: 947 TDINECESPQACLYGNCTNTLGS--------------NCTDINECESPQACLYGNCTNTL 992
D++EC+ P C +G C NT GS C D +EC C G C N +
Sbjct: 3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCKNVI 62
Query: 993 GSFSCTCPPNYQLTP 1007
G F CTC ++ P
Sbjct: 63 GGFECTCEEGFEPGP 77
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 13/78 (16%)
Query: 203 SGTYINECEEMPEICGSGTCENNIGSFSCR----YI---NECEEMPEI-----CGSGTCE 250
S ++EC+E P++C G C N GS+ C YI NEC + E CG+GTC+
Sbjct: 1 SAVDMDECKE-PDVCKHGQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNGTCK 59
Query: 251 NNIGSFSCRCEDGYSVKP 268
N IG F C CE+G+ P
Sbjct: 60 NVIGGFECTCEEGFEPGP 77
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 575 IDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVN 626
+D+DEC+ +C++G+C N GS+ CEC GY LA G C D DEC N
Sbjct: 3 VDMDECKEPD-VCKHGQCINTDGSYRCECPFGYILA--GNECVDTDECSVGN 51
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 36/109 (33%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
++EC+E P++C G C N GS+ C C GY +
Sbjct: 5 MDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--------------------------- 36
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLP 342
G CVD DEC+ CG G C N +G + C C +G+ P
Sbjct: 37 -------AGNECVDTDECSVG-NPCGNGTCKNVIGGFECTCEEGFEPGP 77
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 306 VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECID 349
VD+DEC C G C+N G+Y C CP GY+L +G EC+D
Sbjct: 3 VDMDECKEP-DVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 568 VAVINDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGY 607
+ N+C+D DEC + + C NG C+N IG F C C +G+
Sbjct: 35 ILAGNECVDTDECSVGN-PCGNGTCKNVIGGFECTCEEGF 73
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 1017 DINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
D++EC+E D +C++G C NT GS+ C C G+ L
Sbjct: 4 DMDECKEPD-VCKHGQCINTDGSYRCECPFGYIL 36
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 860 TDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
D+DEC +P IC C N G F+C C GY N SC DIDEC+ N+C C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCAQ-LC 57
Query: 920 VNAIGSFKCHC--YAGFKLSHNN 940
VN G + C+C GFKL+ +
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQ 80
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEE 196
+++DEC+L P++C C N PG F C+C G+ Y+ + C DI+EC E
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE 50
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKE 624
D+DEC + +C C+N G F CEC +GY + + C D+DEC E
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE 50
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNEC 812
+D++EC+L PS C C N G + CECP GY + K C D +EC
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC 48
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 972 TDINECE-SPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICEN 1030
D++EC P C C N G F C CP Y+ +C EDI+EC E N+C
Sbjct: 1 KDVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSC---EDIDECSE--NMCAQ 55
Query: 1031 GHCTNTFGSFMCSC--QDGFKL 1050
C N G + C C + GFKL
Sbjct: 56 -LCVNYPGGYTCYCDGKKGFKL 76
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 903 DIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINEC 952
D+DEC+ P+IC C N G F+C C G++ + + +C DI+EC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSK---SCEDIDEC 48
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 43/116 (37%), Gaps = 37/116 (31%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADC 293
++EC P ICG+ C+N G F C C +GY
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYR---------------------------- 34
Query: 294 INNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVC--PDGYMLLPSGKEC 347
N C DIDEC+ ++ C + CVN G Y C C G+ L K C
Sbjct: 35 ----YNLKSKSCEDIDECSENM--CAQ-LCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 113 EDIDECTDNTNYCDYILLCGSKPGEF---------MNPMTNKTEEIDECNLMPNMCNHGT 163
+D+DEC+ + C +C + PG+F N + E+IDEC+ NMC
Sbjct: 1 KDVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECS--ENMCAQ-L 56
Query: 164 CMNTPGSFHCQCN--RGFLYDSDTHQC 188
C+N PG + C C+ +GF D C
Sbjct: 57 CVNYPGGYTCYCDGKKGFKLAQDQKSC 83
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRR-------ELC---- 355
D+DEC+ CG C N G + C CP+GY K C D+ +LC
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENMCAQLCVNYP 61
Query: 356 --YLNYTDGLCSLPMSNEQT 373
Y Y DG ++ +Q
Sbjct: 62 GGYTCYCDGKKGFKLAQDQK 81
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 21/72 (29%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C+N+ G F C CP GYR + SC ED++EC+ A
Sbjct: 18 CKNIPGDFECECPEGYRYNLKSKSC------------------EDIDECSENMCA---QL 56
Query: 782 CINTDGSYRCEC 793
C+N G Y C C
Sbjct: 57 CVNYPGGYTCYC 68
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 18/79 (22%)
Query: 207 INECEEMPEICGSGTCEN---------------NIGSFSCRYINECEEMPEICGSGTCEN 251
++EC P ICG+ C+N N+ S SC I+EC E +C C N
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCAQ-LCVN 59
Query: 252 NIGSFSCRCEDGYSVKPAE 270
G ++C C+ K A+
Sbjct: 60 YPGGYTCYCDGKKGFKLAQ 78
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 306 VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCS 365
DIDEC +S C G C N G++ C C L P+ CI+ + C+ DG C
Sbjct: 2 ADIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 366 LPMSNEQTRMVCCCSMGQSWGKPCQPCPPPGSRDYILLCGKDFAKLCPEGVGRGDKGEDL 425
+ ++ + CC S+G +WG PC C +CGK ++++ +G + ED+
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLC------QVDPICGKGYSRI------KGTQCEDI 107
Query: 426 NECRTVITVRDSYFTEQWRDAKKNQRLGFCYRSLTNGRCVLPTGPAL 472
+EC E + KN G C + + +C P+G L
Sbjct: 108 DEC------------EVFPGVCKN---GLCVNTRGSFKCQCPSGMTL 139
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 859 STDIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGT 918
S DIDEC P C NG C N GSF C C++ TL+ + C++ + + +
Sbjct: 1 SADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRC 58
Query: 919 CVNAIGS-FKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINEC 977
+N G+ K C + + + C C+ C G + G+ C DI+EC
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPC-------TLCQVDPICGKGY-SRIKGTQCEDIDEC 110
Query: 978 ES-PQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACV 1013
E P C G C NT GSF C CP L G C+
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 54/133 (40%), Gaps = 45/133 (33%)
Query: 720 GKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGV--GR----------------- 760
G C+N GSFIC C L P K C E C + V GR
Sbjct: 15 GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSS 74
Query: 761 --------------------------GDKGEDLNECALMPSACQGGECINTDGSYRCECP 794
G + ED++EC + P C+ G C+NT GS++C+CP
Sbjct: 75 LGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCP 134
Query: 795 AGYVKDETGKICI 807
+G D TG+IC+
Sbjct: 135 SGMTLDATGRICL 147
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 18/150 (12%)
Query: 766 DLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDDNE---CLSIPXXXXXX 822
D++EC P C G C N+ GS+ CEC + D T ICI+ + ++
Sbjct: 3 DIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEI 60
Query: 823 XXXXXXXXFECTCSEGYAPGPLGSCAILLTLPPI----------SPSTDIDECYERPGIC 872
+C S G A GS L + PI + DIDEC PG+C
Sbjct: 61 NINGATLKSQCCSSLGAA---WGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVC 117
Query: 873 ANGDCANFQGSFQCTCANGYTLNTARDSCV 902
NG C N +GSF+C C +G TL+ C+
Sbjct: 118 KNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 63/144 (43%), Gaps = 28/144 (19%)
Query: 146 TEEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCID--------------- 190
+ +IDEC P C +G C N+PGSF C+C+ D CI+
Sbjct: 1 SADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRC 58
Query: 191 ---INECEEMPEICGS-----GTYINECEEMPEICGSGTCENNIGSFSCRYINECEEMPE 242
IN + C S G+ C+ P ICG G + I C I+ECE P
Sbjct: 59 EININGATLKSQCCSSLGAAWGSPCTLCQVDP-ICGKGY--SRIKGTQCEDIDECEVFPG 115
Query: 243 ICGSGTCENNIGSFSCRCEDGYSV 266
+C +G C N GSF C+C G ++
Sbjct: 116 VCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 59/149 (39%), Gaps = 11/149 (7%)
Query: 902 VDIDECARHPNICNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYG 961
DIDEC P C NG C N+ GSF C C + L C + + Q + G
Sbjct: 2 ADIDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTI---CIETIKGTCWQTVIDG 56
Query: 962 NCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINEC 1021
C + C S A CT L C Y G C EDI+EC
Sbjct: 57 RCEININGATLKSQCCSSLGAAWGSPCT--LCQVDPICGKGYSRI-KGTQC---EDIDEC 110
Query: 1022 EEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
E +C+NG C NT GSF C C G L
Sbjct: 111 EVFPGVCKNGLCVNTRGSFKCQCPSGMTL 139
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 65/156 (41%), Gaps = 26/156 (16%)
Query: 207 INECEEMPEICGSGTCENNIGSFSCRYINECEEMP--------------EICGSGTCENN 252
I+ECE P C +G C+N+ GSF C +E P + G CE N
Sbjct: 4 IDECESSP--CINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEIN 61
Query: 253 IGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECA 312
I + + + S+ A G CT C + C GT+C DIDEC
Sbjct: 62 INGATLKSQCCSSLGAAWGSPCT----------LCQVDPICGKGYSRIKGTQCEDIDECE 111
Query: 313 TSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECI 348
C G CVN G++ C CP G L +G+ C+
Sbjct: 112 VFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 67/181 (37%), Gaps = 47/181 (25%)
Query: 576 DLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCRDVDECKEVNKRESRCYLD 635
D+DEC S C NG C+N+ GSF CEC TL C + + C+
Sbjct: 3 DIDECE--SSPCINGVCKNSPGSFICECSSESTLDPTKTIC--------IETIKGTCWQT 52
Query: 636 TXXXXXXXXXXXXXXXXXSRRVTCTKEIAGSTTRSTCCCSIGKAWGPQCEECPAVGSDEH 695
C I G+T +S CC S+G AWG C C +
Sbjct: 53 VIDGR------------------CEININGATLKSQCCSSLGAAWGSPCTLC------QV 88
Query: 696 KTLCPGGSGYRPNSATR----------EGICPSPGKCQNVMGSFICTCPPGYRLSPDKNS 745
+C G GY T+ G+C + G C N GSF C CP G L
Sbjct: 89 DPIC--GKGYSRIKGTQCEDIDECEVFPGVCKN-GLCVNTRGSFKCQCPSGMTLDATGRI 145
Query: 746 C 746
C
Sbjct: 146 C 146
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 147 EEIDECNLMPNMCNHGTCMNTPGSFHCQCNRGFLYDSDTHQCI 189
E+IDEC + P +C +G C+NT GSF CQC G D+ C+
Sbjct: 105 EDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 572 NDCIDLDECRMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYC 616
C D+DEC + +C+NG C N GSF C+C G TL + G+ C
Sbjct: 102 TQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 16/69 (23%)
Query: 453 GFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTMGMAWGPQCQLCPT-----------RGS 501
G C++++ +GRC + A L + CC ++G AWG C LC +G+
Sbjct: 47 GTCWQTVIDGRCEININGATL----KSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGT 102
Query: 502 QTCEDINEC 510
Q CEDI+EC
Sbjct: 103 Q-CEDIDEC 110
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 841 PGPLGSCAILLTLPPISPSTDIDECYERPGICAN--GDCANFQGSFQCTCANGYT----- 893
PG I+ T P+ DI+EC + DC N +GS+ C C+ GY
Sbjct: 25 PGFSSFSEIITT--PMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA 82
Query: 894 ---LNTARDSCVDIDECARHPNICNNGT-CVNAIGSFKCHCYAGFKLSH 938
N + ++C D+DEC+ + C++ T C N +GS+ C C G+K H
Sbjct: 83 KTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH 131
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 971 CTDINECE--SPQAC-LYGNCTNTLGSFSCTCPPNYQLTPAGNACV-----VLEDINECE 1022
C DINEC S +C + +C NT GS+ C C P Y+ +D++EC
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECS 100
Query: 1023 EHDNICENGH-CTNTFGSFMCSCQDGFK 1049
+ C++ C NT GS+ C C+ G+K
Sbjct: 101 SGQHQCDSSTVCFNTVGSYSCRCRPGWK 128
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 173 CQCNRGF-----LYDSDTHQCIDINECEEMPEI-CGS--------GTYINECEEMPEICG 218
C+CN GF + + C DINEC + ++ CG G+Y C E
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS 80
Query: 219 SGTCENNIGSFSCRYINECEEMPEICGSGT-CENNIGSFSCRCEDGYSVKPAEG 271
N +C+ ++EC C S T C N +GS+SCRC G+ KP G
Sbjct: 81 GAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW--KPRHG 132
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 35/131 (26%)
Query: 886 CTCANGYT-----LNTARDSCVDIDECARHPNIC--NNGTCVNAIGSFKCHCYAGFK--- 935
C C G++ + T ++C DI+ECA + C N GS+ C C G++
Sbjct: 21 CRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVS 80
Query: 936 --LSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECESPQACLYGNCTNTLG 993
+ N+ C D++EC S Q ++C+S C NT+G
Sbjct: 81 GAKTFKNESENTCQDVDECSSGQ------------------HQCDSSTVCF-----NTVG 117
Query: 994 SFSCTCPPNYQ 1004
S+SC C P ++
Sbjct: 118 SYSCRCRPGWK 128
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 27/112 (24%)
Query: 230 SCRYINECEEMPEI-CGSGT-CENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNC 287
+C INEC + ++ CG + C N GS+ C C GY +P G T +
Sbjct: 40 TCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY--EPVSGAK-------TFK---- 86
Query: 288 DDNADCINNPVNKTGTRCVDIDECATSIQRCGEG-FCVNDVGTYHCVCPDGY 338
N++ C D+DEC++ +C C N VG+Y C C G+
Sbjct: 87 -----------NESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 765 EDLNECALMPSACQG--GECINTDGSYRCECPAGY--------VKDETGKICIDDNECLS 814
+D+NECA + G +C NT+GSY C C GY K+E+ C D +EC S
Sbjct: 42 DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 127 YILLCGSKPGEFMNPMTNKTEEIDECNLMPNMCNHGT-CMNTPGSFHCQCNRGF 179
Y + G+K F N N +++DEC+ + C+ T C NT GS+ C+C G+
Sbjct: 76 YEPVSGAK--TFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 550 NSLACALTPVLTRKVATPVAVINDCIDLDECRMMSYLC--RNGRCRNNIGSFFCECLQGY 607
N+ AC P + + C D++EC +S + + C N GS+ C C GY
Sbjct: 17 NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGY 76
Query: 608 -------TLASEGQ-YCRDVDEC 622
T +E + C+DVDEC
Sbjct: 77 EPVSGAKTFKNESENTCQDVDEC 99
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 23/109 (21%)
Query: 502 QTCEDINECLELSNQCAFRCHNIS--MSVSNSLACALTPVLTRKISMSVSNSLACALTPV 559
+TC+DINEC LS C S + S C +P PV
Sbjct: 39 ETCDDINECATLSK---VSCGKFSDCWNTEGSYDCVCSP----------------GYEPV 79
Query: 560 LTRKVATPVAVINDCIDLDECRMMSYLCRNGR-CRNNIGSFFCECLQGY 607
K + N C D+DEC + C + C N +GS+ C C G+
Sbjct: 80 SGAKTFKNESE-NTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 305 CVDIDECAT-SIQRCGE-GFCVNDVGTYHCVCPDGYMLLPSGK 345
C DI+ECAT S CG+ C N G+Y CVC GY + K
Sbjct: 41 CDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAK 83
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 763 KGEDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPXXXX 820
+D++EC+L + C+ G+CINT GS+ C+C GY TG C ID NEC+S P
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNPCQND 56
Query: 821 XXXXXXXXXXFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANF 880
F+C C GY + + DEC P + NG C +
Sbjct: 57 ATCLDQIGE-FQCICMPGYEG--------------VHCEVNTDECASSPCL-HNGRCLDK 100
Query: 881 QGSFQCTCANGYT 893
FQC C G+T
Sbjct: 101 INEFQCECPTGFT 113
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 36/146 (24%)
Query: 859 STDIDECYERPGICAN-GDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNG 917
+ D+DEC C + G C N GSF+C C GYT +D++EC +P N+
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQ-NDA 57
Query: 918 TCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINEC 977
TC++ IG F+C C G++ H CE + +EC
Sbjct: 58 TCLDQIGEFQCICMPGYEGVH-------------CE------------------VNTDEC 86
Query: 978 ESPQACLYGNCTNTLGSFSCTCPPNY 1003
S G C + + F C CP +
Sbjct: 87 ASSPCLHNGRCLDKINEFQCECPTGF 112
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 39/150 (26%)
Query: 900 SCVDIDECARHPNICNN-GTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQAC 958
S D+DEC+ N C + G C+N +GSF+C C G+ D+NEC S
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE------IDVNECVS---- 50
Query: 959 LYGNCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDI 1018
N C++ CL + +G F C C P Y+ G C V +
Sbjct: 51 ----------------NPCQNDATCL-----DQIGEFQCICMPGYE----GVHCEV--NT 83
Query: 1019 NECEEHDNICENGHCTNTFGSFMCSCQDGF 1048
+EC + NG C + F C C GF
Sbjct: 84 DECASSPCL-HNGRCLDKINEFQCECPTGF 112
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 32/133 (24%)
Query: 145 KTEEIDECNLMPNMCNH-GTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGS 203
+++DEC+L N C H G C+NT GSF CQC +G+ ID+NEC P
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNP----- 52
Query: 204 GTYINECEEMPEICGSGTCENNIGSFSCRYI-----NECEEMPEICGS------GTCENN 252
C+ TC + IG F C + CE + C S G C +
Sbjct: 53 ------CQ------NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK 100
Query: 253 IGSFSCRCEDGYS 265
I F C C G++
Sbjct: 101 INEFQCECPTGFT 113
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICAN-GDCANFQGSFQCTCA 889
FEC C +GY GP C I D++EC P C N C + G FQC C
Sbjct: 28 FECQCLQGYT-GP--RCEI-----------DVNECVSNP--CQNDATCLDQIGEFQCICM 71
Query: 890 NGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGF 934
GY V+ DECA P + +NG C++ I F+C C GF
Sbjct: 72 PGYEGVHCE---VNTDECASSPCL-HNGRCLDKINEFQCECPTGF 112
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 246 SGTCENNIGSFSCRCEDGYSVKPAEGPAC-TDENECTMRTHNCDDNADCINN-------- 296
+G C N +GSF C+C GY+ GP C D NEC ++ C ++A C++
Sbjct: 18 AGKCINTLGSFECQCLQGYT-----GPRCEIDVNECV--SNPCQNDATCLDQIGEFQCIC 70
Query: 297 PVNKTGTRC-VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGY 338
G C V+ DECA+S G C++ + + C CP G+
Sbjct: 71 MPGYEGVHCEVNTDECASSPCL-HNGRCLDKINEFQCECPTGF 112
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 22/111 (19%)
Query: 716 CPSPGKCQNVMGSFICTCPPGY---RLSPD-----KNSCQED---------FAKLCPEGV 758
C GKC N +GSF C C GY R D N CQ D F +C G
Sbjct: 15 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 74
Query: 759 GRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICIDD 809
+ +ECA P G C++ ++CECP G+ TG +C D
Sbjct: 75 EGVHCEVNTDECASSPCL-HNGRCLDKINEFQCECPTGF----TGHLCQVD 120
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 6/49 (12%)
Query: 576 DLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYCR-DVDEC 622
D+DEC + + C + G+C N +GSF C+CLQGYT G C DV+EC
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNEC 48
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 986 GNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICEN-GHCTNTFGSFMCSC 1044
G C NTLGSF C C Y G C + D+NEC N C+N C + G F C C
Sbjct: 19 GKCINTLGSFECQCLQGY----TGPRCEI--DVNECVS--NPCQNDATCLDQIGEFQCIC 70
Query: 1045 QDGFK 1049
G++
Sbjct: 71 MPGYE 75
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 111 SCEDIDECTDNTNYCDYILLCGSKPGEF----MNPMTNKTEEIDECNLMPNMC-NHGTCM 165
S +D+DEC+ N C++ C + G F + T EID + N C N TC+
Sbjct: 1 SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCL 60
Query: 166 NTPGSFHCQCNRGFLYDSDTHQCIDINECEEMP 198
+ G F C C G+ H ++ +EC P
Sbjct: 61 DQIGEFQCICMPGY---EGVHCEVNTDECASSP 90
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 765 EDLNECALMPSACQ-GGECINTDGSYRCECPAGYVKDETGKIC-IDDNECLSIPXXXXXX 822
+D++EC+L + C+ G+CINT GS+ C+C GY TG C ID NEC+S P
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGY----TGPRCEIDVNECVSNPCQNDAT 56
Query: 823 XXXXXXXXFECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQG 882
F+C C GY + + DEC P + NG C +
Sbjct: 57 CLDQIGE-FQCICMPGYEG--------------VHCEVNTDECASSPCL-HNGRCLDKIN 100
Query: 883 SFQCTCANGYT 893
FQC C G+T
Sbjct: 101 EFQCECPTGFT 111
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 59/144 (40%), Gaps = 36/144 (25%)
Query: 861 DIDECYERPGICAN-GDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTC 919
D+DEC C + G C N GSF+C C GYT +D++EC +P N+ TC
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNPCQ-NDATC 57
Query: 920 VNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGSNCTDINECES 979
++ IG F+C C G++ H CE + +EC S
Sbjct: 58 LDQIGEFQCICMPGYEGVH-------------CE------------------VNTDECAS 86
Query: 980 PQACLYGNCTNTLGSFSCTCPPNY 1003
G C + + F C CP +
Sbjct: 87 SPCLHNGRCLDKINEFQCECPTGF 110
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 39/147 (26%)
Query: 903 DIDECARHPNICNN-GTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYG 961
D+DEC+ N C + G C+N +GSF+C C G+ D+NEC S
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE------IDVNECVS------- 48
Query: 962 NCTNTLGSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINEC 1021
N C++ CL + +G F C C P Y+ G C V + +EC
Sbjct: 49 -------------NPCQNDATCL-----DQIGEFQCICMPGYE----GVHCEV--NTDEC 84
Query: 1022 EEHDNICENGHCTNTFGSFMCSCQDGF 1048
+ NG C + F C C GF
Sbjct: 85 ASSPCL-HNGRCLDKINEFQCECPTGF 110
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 49/105 (46%), Gaps = 21/105 (20%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICAN-GDCANFQGSFQCTCA 889
FEC C +GY GP C I D++EC P C N C + G FQC C
Sbjct: 26 FECQCLQGYT-GP--RCEI-----------DVNECVSNP--CQNDATCLDQIGEFQCICM 69
Query: 890 NGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCHCYAGF 934
GY V+ DECA P + +NG C++ I F+C C GF
Sbjct: 70 PGYEGVHCE---VNTDECASSPCL-HNGRCLDKINEFQCECPTGF 110
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 32/131 (24%)
Query: 147 EEIDECNLMPNMCNH-GTCMNTPGSFHCQCNRGFLYDSDTHQCIDINECEEMPEICGSGT 205
+++DEC+L N C H G C+NT GSF CQC +G+ ID+NEC P
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE---IDVNECVSNP------- 50
Query: 206 YINECEEMPEICGSGTCENNIGSFSCRYIN-----ECEEMPEICGS------GTCENNIG 254
C+ TC + IG F C + CE + C S G C + I
Sbjct: 51 ----CQ------NDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKIN 100
Query: 255 SFSCRCEDGYS 265
F C C G++
Sbjct: 101 EFQCECPTGFT 111
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 246 SGTCENNIGSFSCRCEDGYSVKPAEGPAC-TDENECTMRTHNCDDNADCINN-------- 296
+G C N +GSF C+C GY+ GP C D NEC ++ C ++A C++
Sbjct: 16 AGKCINTLGSFECQCLQGYT-----GPRCEIDVNECV--SNPCQNDATCLDQIGEFQCIC 68
Query: 297 PVNKTGTRC-VDIDECATSIQRCGEGFCVNDVGTYHCVCPDGY 338
G C V+ DECA+S G C++ + + C CP G+
Sbjct: 69 MPGYEGVHCEVNTDECASSPCL-HNGRCLDKINEFQCECPTGF 110
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 6/49 (12%)
Query: 576 DLDECRMMSYLCRN-GRCRNNIGSFFCECLQGYTLASEGQYCR-DVDEC 622
D+DEC + + C + G+C N +GSF C+CLQGYT G C DV+EC
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNEC 46
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 22/108 (20%)
Query: 716 CPSPGKCQNVMGSFICTCPPGY---RLSPD-----KNSCQED---------FAKLCPEGV 758
C GKC N +GSF C C GY R D N CQ D F +C G
Sbjct: 13 CEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGY 72
Query: 759 GRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKIC 806
+ +ECA P G C++ ++CECP G+ TG +C
Sbjct: 73 EGVHCEVNTDECASSPCL-HNGRCLDKINEFQCECPTGF----TGHLC 115
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 986 GNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICEN-GHCTNTFGSFMCSC 1044
G C NTLGSF C C Y G C + D+NEC N C+N C + G F C C
Sbjct: 17 GKCINTLGSFECQCLQGY----TGPRCEI--DVNECV--SNPCQNDATCLDQIGEFQCIC 68
Query: 1045 QDGFK 1049
G++
Sbjct: 69 MPGYE 73
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 113 EDIDECTDNTNYCDYILLCGSKPGEF----MNPMTNKTEEIDECNLMPNMC-NHGTCMNT 167
+D+DEC+ N C++ C + G F + T EID + N C N TC++
Sbjct: 1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQ 60
Query: 168 PGSFHCQCNRGFLYDSDTHQCIDINECEEMP 198
G F C C G+ H ++ +EC P
Sbjct: 61 IGEFQCICMPGY---EGVHCEVNTDECASSP 88
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 20/77 (25%)
Query: 721 KCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGG 780
KCQ + G+ CTC GYRL+ D +CQ D+NECA QG
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQ------------------DVNECAEEGYCSQG- 56
Query: 781 ECINTDGSYRCECPAGY 797
C N++G+++C C AGY
Sbjct: 57 -CTNSEGAFQCWCEAGY 72
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 874 NGDCAN----FQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNAIGSFKCH 929
NG CA +G+ QCTC GY L +C D++ECA C+ G C N+ G+F+C
Sbjct: 10 NGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE-EGYCSQG-CTNSEGAFQCW 67
Query: 930 CYAGFKL 936
C AG++L
Sbjct: 68 CEAGYEL 74
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C G+ CTC Y+LT G C +D+NEC E + C G CTN+ G+F C C+ G
Sbjct: 17 CQMIRGAVQCTCHTGYRLTEDGRTC---QDVNECAE-EGYCSQG-CTNSEGAFQCWCEAG 71
Query: 1048 FKL 1050
++L
Sbjct: 72 YEL 74
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 33/106 (31%)
Query: 914 CNNGTCVNA----IGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQACLYGNCTNTLGS 969
NNG C G+ +C C+ G++L+ + G
Sbjct: 8 VNNGGCAQKCQMIRGAVQCTCHTGYRLTED----------------------------GR 39
Query: 970 NCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVL 1015
C D+NEC C G CTN+ G+F C C Y+L P +C L
Sbjct: 40 TCQDVNECAEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKAL 84
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 298 VNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRE--LC 355
+ + G C D++ECA C +G C N G + C C GY L P + C + E L
Sbjct: 34 LTEDGRTCQDVNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLL 91
Query: 356 YLNYTDGLCSLPMSNEQTRMV 376
+ N D LP +E T ++
Sbjct: 92 FANRIDIRQVLPHRSEYTLLL 112
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 861 DIDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC 901
D++EC E G C+ G C N +G+FQC C GY L R SC
Sbjct: 43 DVNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 81
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 708 NSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGV 758
N EG C C N G+F C C GY L PD+ SC+ L PE V
Sbjct: 45 NECAEEGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRSCK----ALGPEPV 89
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 230 SCRYINECEEMPEICGSGTCENNIGSFSCRCEDGYSVKP 268
+C+ +NEC E C G C N+ G+F C CE GY ++P
Sbjct: 40 TCQDVNECAE-EGYCSQG-CTNSEGAFQCWCEAGYELRP 76
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 591 RCRNNIGSFFCECLQGYTLASEGQYCRDVDECKE 624
+C+ G+ C C GY L +G+ C+DV+EC E
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAE 49
>pdb|1APJ|A Chain A, Nmr Study Of The Transforming Growth Factor Beta Binding
Protein-Like Domain (Tb Module8-Cys Domain), Nmr, 21
Structures
Length = 74
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 349 DMRRELCYLNYTDGLCSLPMSNEQTRMVCCCSM-GQSWGKPCQPCPPPGSRDYILLCGKD 407
D+R CY + G CS P S ++ CCC++ G+ WG PC+ CP +
Sbjct: 4 DLRMSYCYAKFEGGKCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPD--------EA 55
Query: 408 FAKLCPEGVG 417
F ++CP G G
Sbjct: 56 FRQICPYGSG 65
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 446 AKKNQRLGFCYRSLTNGRCVLPTGPALLMEVTRMDCCCTM-GMAWGPQCQLCPTRGSQTC 504
+ ++ R+ +CY G+C P ++ +CCC + G WG C+LCPT +
Sbjct: 1 SAQDLRMSYCYAKFEGGKCSSPKS----RNHSKQECCCALKGEGWGDPCELCPTEPDEAF 56
Query: 505 EDI 507
I
Sbjct: 57 RQI 59
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 658 TCTKEIAGSTTRSTCCCSI-GKAWGPQCEECPAVGSDEHKTLCPGGSG 704
C+ + + ++ CCC++ G+ WG CE CP + + +CP GSG
Sbjct: 18 KCSSPKSRNHSKQECCCALKGEGWGDPCELCPTEPDEAFRQICPYGSG 65
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 30 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 85
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 86 EGGYKCQCEEGFQLD 100
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 30 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 87
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 88 GYKCQCEEGFQLDPHTKAC 106
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 43 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 96
Query: 1048 FKL 1050
F+L
Sbjct: 97 FQL 99
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C DI+EC+ P C C N G + C C +QL P AC
Sbjct: 66 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 65 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 43 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 81
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 82 CVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 50 YECLCPDGFQLVAQRRCE------------DIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 95
Query: 891 GYTLNTARDSC 901
G+ L+ +C
Sbjct: 96 GFQLDPHTKAC 106
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 1 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 56
Query: 923 IGSFKCHCYAGFKL 936
G +KC C GF+L
Sbjct: 57 EGGYKCQCEEGFQL 70
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 58
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 59 GYKCQCEEGFQLDPHTKAC 77
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 14 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 67
Query: 1048 FKL 1050
F+L
Sbjct: 68 FQL 70
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDI 1018
C DI+EC+ P C C N G + C C +QL P AC + I
Sbjct: 37 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 83
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTD 361
RC DIDEC C + CVN G Y C C +G+ L P K C + + YL +T+
Sbjct: 36 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAV-GSIAYLFFTN 90
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 14 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 52
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 53 CVNLEGGYKCQCEEGFQLDPHTKAC 77
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 21 YECLCPDGFQLVAQRRCE------------DIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 66
Query: 891 GYTLNTARDSCVDIDECA 908
G+ L+ +C + A
Sbjct: 67 GFQLDPHTKACKAVGSIA 84
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 6 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 61
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 62 EGGYKCQCEEGFQLD 76
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 6 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 63
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 64 GYKCQCEEGFQLDPHTKAC 82
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 19 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 72
Query: 1048 FKL 1050
F+L
Sbjct: 73 FQL 75
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C DI+EC+ P C C N G + C C +QL P AC
Sbjct: 42 CEDIDECQDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 41 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 19 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTCS-QL 57
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ L DIDEC + P C+ C N +G ++C C
Sbjct: 26 YECLCPDGF------------QLVAQRRCEDIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 71
Query: 891 GYTLNTARDSC 901
G+ L+ +C
Sbjct: 72 GFQLDPHTKAC 82
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 3 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 58
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 59 EGGYKCQCEEGFQLD 73
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 60
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 61 GYKCQCEEGFQLDPHTKAC 79
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 16 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 69
Query: 1048 FKL 1050
F+L
Sbjct: 70 FQL 72
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVL 1015
C DI+EC+ P C C N G + C C +QL P AC +
Sbjct: 39 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 82
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 38 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 16 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 54
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 55 CVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ L DIDEC + P C+ C N +G ++C C
Sbjct: 23 YECLCPDGF------------QLVAQRRCEDIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 68
Query: 891 GYTLNTARDSCVDI 904
G+ L+ +C +
Sbjct: 69 GFQLDPHTKACKAV 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C++ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 3 NECLDNNGGCSHV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 58
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 59 EGGYKCQCEEGFQLD 73
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 60
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 61 GYKCQCEEGFQLDPHTKAC 79
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 16 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 69
Query: 1048 FKL 1050
F+L
Sbjct: 70 FQL 72
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C DI+EC+ P C C N G + C C +QL P AC
Sbjct: 39 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 38 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 16 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 54
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 55 CVNLEGGYKCQCEEGFQLDPHTKAC 79
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ L DIDEC + P C+ C N +G ++C C
Sbjct: 23 YECLCPDGFQ------------LVAQRRCEDIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 68
Query: 891 GYTLNTARDSC 901
G+ L+ +C
Sbjct: 69 GFQLDPHTKAC 79
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C+ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 30 NECLDNNGGCSYV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 85
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 86 EGGYKCQCEEGFQLD 100
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C Y+ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 87
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 88 GYKCQCEEGFQLDPHTKAC 106
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 43 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 96
Query: 1048 FKL 1050
F+L
Sbjct: 97 FQL 99
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C DI+EC+ P C C N G + C C +QL P AC
Sbjct: 66 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 65 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 43 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 81
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 82 CVNLEGGYKCQCEEGFQLDPHTKAC 106
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 50 YECLCPDGFQLVAQRRCE------------DIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 95
Query: 891 GYTLNTARDSC 901
G+ L+ +C
Sbjct: 96 GFQLDPHTKAC 106
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 863 DECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHPNICNNGTCVNA 922
+EC + G C+ C + + ++C C +G+ L A+ C DIDEC + P+ C+ CVN
Sbjct: 6 NECLDNNGGCSYV-CNDLKIGYECLCPDGFQL-VAQRRCEDIDEC-QDPDTCSQ-LCVNL 61
Query: 923 IGSFKCHCYAGFKLS 937
G +KC C GF+L
Sbjct: 62 EGGYKCQCEEGFQLD 76
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C Y+ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 6 NECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 63
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 64 GYKCQCEEGFQLDPHTKAC 82
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 19 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 72
Query: 1048 FKL 1050
F+L
Sbjct: 73 FQL 75
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNAC 1012
C DI+EC+ P C C N G + C C +QL P AC
Sbjct: 42 CEDIDECQDPDTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
RC DIDEC C + CVN G Y C C +G+ L P K C
Sbjct: 41 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 19 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTCS-QL 57
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKAC 82
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ L DIDEC + P C+ C N +G ++C C
Sbjct: 26 YECLCPDGF------------QLVAQRRCEDIDEC-QDPDTCSQL-CVNLEGGYKCQCEE 71
Query: 891 GYTLNTARDSC 901
G+ L+ +C
Sbjct: 72 GFQLDPHTKAC 82
>pdb|1KSQ|A Chain A, Nmr Study Of The Third Tb Domain From Latent Transforming
Growth Factor-Beta Binding Protein-1
Length = 75
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 659 CTKEIAGSTTRSTCCCSIGKAWGPQCE--ECPAVGSDEHKTLCPGGSGYRP 707
C +A + T+ CCC+ G WG CE CP +G+ E +CP G G+ P
Sbjct: 22 CDNVLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGTAEFTEMCPKGKGFVP 72
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 351 RRELCYLNYTDG-LCSLPMSNEQTRMVCCCSMGQSWGKPCQ--PCPPPGSRDYILLCGKD 407
++ CY N D LC ++ T+ CCC+ G WG C+ PCP +L +
Sbjct: 8 EKKECYYNLNDASLCDNVLAPNVTKQECCCTSGAGWGDNCEIFPCP--------VLGTAE 59
Query: 408 FAKLCPEGVGRGDKGE 423
F ++CP+G G GE
Sbjct: 60 FTEMCPKGKGFVPAGE 75
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 471 ALLMEVTRMDCCCTMGMAWGPQCQL--CPTRGS 501
L VT+ +CCCT G WG C++ CP G+
Sbjct: 25 VLAPNVTKQECCCTSGAGWGDNCEIFPCPVLGT 57
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 295 NNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRREL 354
++ N+ + D D+C TS + +G C + +G Y C C +G+ GK C R+L
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKL 83
Query: 355 CYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
C L+ +G C EQ +VC C+ G + + C P G
Sbjct: 84 CSLD--NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 45/123 (36%), Gaps = 22/123 (17%)
Query: 685 EECPAVGSDEHKTLCPGGSGYRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKN 744
EE V D KT + Y+ C + GKC++ +G + CTC G+ +
Sbjct: 20 EEAREVFEDSDKTN-EFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGK 74
Query: 745 SCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGK 804
+C+ KLC G D+ C S C C GY + GK
Sbjct: 75 NCELFTRKLCSLDNGDCDQF-----------------CHEEQNSVVCSCARGYTLADNGK 117
Query: 805 ICI 807
CI
Sbjct: 118 ACI 120
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 295 NNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRREL 354
++ N + D D+C TS + +G C + +G Y C C +G+ GK C R+L
Sbjct: 34 SDKTNXFWNKYKDGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKL 88
Query: 355 CYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
C L+ +G C EQ +VC C+ G + + C P G
Sbjct: 89 CSLD--NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 128
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 705 YRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKG 764
Y+ C + GKC++ +G + CTC G+ + +C+ KLC G D+
Sbjct: 44 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQF 99
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICI 807
C S C C GY + GK CI
Sbjct: 100 -----------------CHEEQNSVVCSCARGYTLADNGKACI 125
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 295 NNPVNKTGTRCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRREL 354
++ N+ + D D+C TS + +G C + +G Y C C +G+ GK C R+L
Sbjct: 29 SDKTNEFWNKYKDGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKL 83
Query: 355 CYLNYTDGLCSLPMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
C L+ +G C EQ +VC C+ G + + C P G
Sbjct: 84 CSLD--NGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG 123
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl
Receptor
Length = 791
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 914 CNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQA--CLYGNCTN-----T 966
C++G C++ GS +C + +D +G C ++ CE P C G C
Sbjct: 240 CSDGNCIH--GSRQCD--REYDCKDMSDEVG-CVNVTLCEGPNKFKCHSGECITLDKVCN 294
Query: 967 LGSNCTD-----INECESPQACLYGN------CTNTLGSFSCTCPPNYQLTPAGNACVVL 1015
+ +C D I EC + + CL N C + + C CP +QL A C
Sbjct: 295 MARDCRDWSDEPIKECGTNE-CLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC--- 349
Query: 1016 EDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
EDI+EC++ D + C N G + C C++GF+L
Sbjct: 350 EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL 382
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 370
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 371 GYKCQCEEGFQLDPHTKAC 389
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDI 1018
C DI+EC+ P C C N G + C C +QL P AC + I
Sbjct: 349 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 395
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTD 361
RC DIDEC C + CVN G Y C C +G+ L P K C + + YL +T+
Sbjct: 348 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAV-GSIAYLFFTN 402
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 326 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 364
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 365 CVNLEGGYKCQCEEGFQLDPHTKAC 389
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 333 YECLCPDGFQLVAQRRCE------------DIDECQD-PDTCSQL-CVNLEGGYKCQCEE 378
Query: 891 GYTLNTARDSCVDIDECA 908
G+ L+ +C + A
Sbjct: 379 GFQLDPHTKACKAVGSIA 396
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C + +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 3 DGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 55
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 56 FCHEEQASVVCSCARGYTLADNGKACIPTG 85
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 21/103 (20%)
Query: 705 YRPNSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKG 764
Y+ C + GKC++ +G + CTC G+ + +C+ KLC G D+
Sbjct: 1 YKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQ- 55
Query: 765 EDLNECALMPSACQGGECINTDGSYRCECPAGYVKDETGKICI 807
C S C C GY + GK CI
Sbjct: 56 ----------------FCHEEQASVVCSCARGYTLADNGKACI 82
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 914 CNNGTCVNAIGSFKCHCYAGFKLSHNNDCIGNCTDINECESPQA--CLYGNCTN-----T 966
C++G C++ GS +C + +D +G C ++ CE P C G C
Sbjct: 222 CSDGNCIH--GSRQCD--REYDCKDMSDEVG-CVNVTLCEGPNKFKCHSGECITLDKVCN 276
Query: 967 LGSNCTD-----INECESPQACLYGN------CTNTLGSFSCTCPPNYQLTPAGNACVVL 1015
+ +C D I EC + + CL N C + + C CP +QL A C
Sbjct: 277 MARDCRDWSDEPIKECGTNE-CLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC--- 331
Query: 1016 EDINECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
EDI+EC++ D + C N G + C C++GF+L
Sbjct: 332 EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQL 364
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 352
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 353 GYKCQCEEGFQLDPHTKAC 371
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDI 1018
C DI+EC+ P C C N G + C C +QL P AC + I
Sbjct: 331 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 377
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTD 361
RC DIDEC C + CVN G Y C C +G+ L P K C + + YL +T+
Sbjct: 330 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAV-GSIAYLFFTN 384
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 308 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 346
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 347 CVNLEGGYKCQCEEGFQLDPHTKAC 371
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 315 YECLCPDGFQLVAQRRCE------------DIDECQD-PDTCSQL-CVNLEGGYKCQCEE 360
Query: 891 GYTLNTARDSCVDIDECA 908
G+ L+ +C + A
Sbjct: 361 GFQLDPHTKACKAVGSIA 378
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C + +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 2 DGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 54
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 55 FCHEEQNSVVCSCARGYTLADNGKACIPTG 84
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C + +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 3 DGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 55
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 56 FCHEEQNSVVCSCARGYTLADNGKACIPTG 85
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C + +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 1 DGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 53
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 54 FCHEEQNSVVCSCARGYTLADNGKACIPTG 83
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C + +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 1 DGDQCETSPCQ-NQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 53
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 54 FCHEEQNSVVCSCARGYTLADNGKACIPTG 83
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 307 DIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTDGLCSL 366
D D+C TS + +G C +G Y C C +G+ GK C R+LC L+ +G C
Sbjct: 2 DGDQCETSPCQ-NQGKCKXGLGEYTCTCLEGF----EGKNCELFTRKLCSLD--NGDCDQ 54
Query: 367 PMSNEQTRMVCCCSMGQSWGKPCQPCPPPG 396
EQ +VC C+ G + + C P G
Sbjct: 55 FCHEEQNSVVCSCARGYTLADNGKACIPTG 84
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 116 DECTDNTNYCDYI---LLCGSK---PGEFMNPMTNKTEEIDECNLMPNMCNHGTCMNTPG 169
+EC DN C ++ L G + P F + E+IDEC P+ C+ C+N G
Sbjct: 41 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQ-LCVNLEG 98
Query: 170 SFHCQCNRGFLYDSDTHQC 188
+ CQC GF D T C
Sbjct: 99 GYKCQCEEGFQLDPHTKAC 117
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 988 CTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMCSCQDG 1047
C + + C CP +QL A C EDI+EC++ D + C N G + C C++G
Sbjct: 54 CNDLKIGYECLCPDGFQLV-AQRRC---EDIDECQDPDTCSQ--LCVNLEGGYKCQCEEG 107
Query: 1048 FKL 1050
F+L
Sbjct: 108 FQL 110
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 971 CTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDI 1018
C DI+EC+ P C C N G + C C +QL P AC + I
Sbjct: 77 CEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSI 123
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 304 RCVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRELCYLNYTD 361
RC DIDEC C + CVN G Y C C +G+ L P K C + + YL +T+
Sbjct: 76 RCEDIDECQDP-DTCSQ-LCVNLEGGYKCQCEEGFQLDPHTKACKAV-GSIAYLFFTN 130
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 21/85 (24%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPSACQGGE 781
C ++ + C CP G++L + + ED++EC P C
Sbjct: 54 CNDLKIGYECLCPDGFQLVAQR-------------------RCEDIDECQ-DPDTC-SQL 92
Query: 782 CINTDGSYRCECPAGYVKDETGKIC 806
C+N +G Y+C+C G+ D K C
Sbjct: 93 CVNLEGGYKCQCEEGFQLDPHTKAC 117
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 831 FECTCSEGYAPGPLGSCAILLTLPPISPSTDIDECYERPGICANGDCANFQGSFQCTCAN 890
+EC C +G+ C DIDEC + P C+ C N +G ++C C
Sbjct: 61 YECLCPDGFQLVAQRRCE------------DIDECQD-PDTCSQL-CVNLEGGYKCQCEE 106
Query: 891 GYTLNTARDSCVDIDECA 908
G+ L+ +C + A
Sbjct: 107 GFQLDPHTKACKAVGSIA 124
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSCQ 747
C N +G + C+C PGY L D++SCQ
Sbjct: 26 CHNYVGGYFCSCRPGYELQEDRHSCQ 51
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 862 IDECYERPGICANGDCANFQGSFQCTCANGYTLNTARDSC 901
++EC E G C+ G C N +G+FQC C GY L R SC
Sbjct: 1 VNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSC 38
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 708 NSATREGICPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGV 758
N EG C S G C N G+F C C GY L PD+ SC+ L PE V
Sbjct: 2 NECAEEGYC-SQG-CTNSEGAFQCWCEAGYELRPDRRSCK----ALGPEPV 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 974 INECESPQACLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVL 1015
+NEC C G CTN+ G+F C C Y+L P +C L
Sbjct: 1 VNECAEEGYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKAL 41
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 308 IDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKECIDMRRE--LCYLNYTDGLCS 365
++ECA C +G C N G + C C GY L P + C + E L + N D
Sbjct: 1 VNECAEE-GYCSQG-CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 366 LPMSNEQTRMV 376
LP +E T ++
Sbjct: 59 LPHRSEYTLLL 69
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 234 INECEEMPEICGSGTCENNIGSFSCRCEDGYSVKP 268
+NEC E C G C N+ G+F C CE GY ++P
Sbjct: 1 VNECAE-EGYCSQG-CTNSEGAFQCWCEAGYELRP 33
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 1018 INECEEHDNICENGHCTNTFGSFMCSCQDGFKL 1050
+NEC E + C G CTN+ G+F C C+ G++L
Sbjct: 1 VNECAE-EGYCSQG-CTNSEGAFQCWCEAGYEL 31
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 244 CGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCD-DNADCINNPVNKTG 302
CG GTC + IGSFSC C G+ EG C E + NC DN C + + + G
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGW-----EGRFCQRE----VSFLNCSLDNGGCTHYCLEEVG 66
Query: 303 TR 304
R
Sbjct: 67 WR 68
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 983 CLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMC 1042
C +G C + +GSFSC C ++ G C C + C + +C G C
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRC 70
Query: 1043 SCQDGFKL 1050
SC G+KL
Sbjct: 71 SCAPGYKL 78
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 914 CNNGTCVNAIGSFKCHCYAGFK 935
C +GTC++ IGSF C C +G++
Sbjct: 16 CGHGTCIDGIGSFSCDCRSGWE 37
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 981 QACLY-GNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECE-EHDNICENGHCTNTFG 1038
Q CL+ G+C +++ ++CTC P Y+ G+ C + + NEC E + C++ C
Sbjct: 11 QPCLHNGSCQDSIWGYTCTCSPGYE----GSNCELAK--NECHPERTDGCQH-FCLPGQE 63
Query: 1039 SFMCSCQDGFKL 1050
S+ CSC G++L
Sbjct: 64 SYTCSCAQGYRL 75
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 25/99 (25%)
Query: 716 CPSPGKCQNVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGDKGEDLNECALMPS 775
C G CQ+ + + CTC PGY + ++C + AK NEC P
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGY----EGSNC--ELAK---------------NECH--PE 49
Query: 776 ACQGGE--CINTDGSYRCECPAGYVKDETGKICIDDNEC 812
G + C+ SY C C GY E K C+ ++C
Sbjct: 50 RTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 877 CANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
C Q S+ C+CA GY L CV D+CA
Sbjct: 58 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 252 NIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNA----DCINNPVNKTGTRCVD 307
N S+ C C +G++ P E C T +CD N +C + G C D
Sbjct: 20 NQTSYLCVCAEGFAPIPHEPHRCQLFCNQTACPADCDPNTQASCECPEGYILDDGFICTD 79
Query: 308 IDECATSIQRCGEGFCVNDVGTYHCVC-PDGYMLLPSGKEC 347
IDEC G C N GT+ C+C PD + G +C
Sbjct: 80 IDECENG--GFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 968 GSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLT 1006
G CTDI+ECE+ C G C N G+F C C P+ L
Sbjct: 74 GFICTDIDECENGGFC-SGVCHNLPGTFECICGPDSALA 111
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 574 CIDLDEC--RMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCR 617
+D+DEC R L + C N IG ++C C GY L ++ + CR
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 859 STDIDECYERPG--ICANGDCANFQGSFQCTCANGYTLNTARDSC 901
+ D+DEC ER + + C N+ G + C+C GY L+T +C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 244 CGSGTCENNIGSFSCRCEDGYSVKPAEGPACTDENECTMRTHNCD-DNADCINNPVNKTG 302
CG GTC IGSFSC C G+ EG C E + NC DN C + + + G
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGW-----EGRFCQRE----VSFLNCSLDNGGCTHYCLEEVG 73
Query: 303 TR 304
R
Sbjct: 74 WR 75
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 983 CLYGNCTNTLGSFSCTCPPNYQLTPAGNACVVLEDINECEEHDNICENGHCTNTFGSFMC 1042
C +G C +GSFSC C ++ G C C + C + +C G C
Sbjct: 23 CGHGTCIXGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRC 77
Query: 1043 SCQDGFKL 1050
SC G+KL
Sbjct: 78 SCAPGYKL 85
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 859 STDIDECYERPGICANGD--CANFQGSFQCTCANGYTLNTARDSCVD 903
+ DIDEC PG D C N G F C+C GY L+ + +C +
Sbjct: 121 AEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 146 TEEIDECNLMPN---MCNHGTCMNTPGSFHCQCNRGFLYDSDTHQC 188
E+IDEC + P C+H C N G F+C C G++ + C
Sbjct: 121 AEDIDECQVAPGEAPTCDH-HCHNHLGGFYCSCRAGYVLHRNKRTC 165
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 1011 ACVVLEDINECEEHDNICE--NGHCTNTFGSFMCSCQDGFKL 1050
A EDI+EC+ + HC N G F CSC+ G+ L
Sbjct: 117 AFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVL 158
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 721 KCQNVMGSFICTCPPGYRLSPDKNSCQE 748
C N +G F C+C GY L +K +C E
Sbjct: 140 HCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 574 CIDLDEC--RMMSYLCRNGRCRNNIGSFFCECLQGYTLASEGQYCR 617
+D+DEC R L + C N IG ++C C GY L ++ + CR
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCR 163
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 859 STDIDECYERPG--ICANGDCANFQGSFQCTCANGYTLNTARDSC 901
+ D+DEC ER + + C N+ G + C+C GY L+T +C
Sbjct: 118 AVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 7/98 (7%)
Query: 255 SFSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNA----DCINNPVNKTGTRCVDIDE 310
S+ C C +G++ P E C T +CD N +C + G C DIDE
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNTQASCECPEGYILDDGFICTDIDE 82
Query: 311 CATSIQRCGEGFCVNDVGTYHCVC-PDGYMLLPSGKEC 347
C G C N GT+ C+C PD + G +C
Sbjct: 83 CENG--GFCSGVCHNLPGTFECICGPDSALAGQIGTDC 118
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 968 GSNCTDINECESPQACLYGNCTNTLGSFSCTCPPNYQLT 1006
G CTDI+ECE+ C G C N G+F C C P+ L
Sbjct: 74 GFICTDIDECENGGFC-SGVCHNLPGTFECICGPDSALA 111
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 330 YHCVCPDGYMLLPSGKECIDMRRELCYL 357
Y C CP G LL +GK C D EL L
Sbjct: 287 YQCACPTGVKLLENGKTCKDGATELLLL 314
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 753 LCPEG-VGRGDKGEDLNECALMPSAC----QGGECINTDGSYRC-ECPAGY 797
CP G +G G EDL+ECAL+P C + C+NT + C CP Y
Sbjct: 26 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY 76
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 231 CRYINECEEMPEICGSGT----CENNIGSFSCR-----------CEDGYSVKPAEGPACT 275
C ++EC +P+IC S + C N F C G E C
Sbjct: 38 CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE 97
Query: 276 DENECTMRTHNCDDNADCI 294
EN C +THNC +A+CI
Sbjct: 98 PENPCKDKTHNCHKHAECI 116
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein From
Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab Fragment
Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab Fragment
Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 28/169 (16%)
Query: 871 ICANGDCANFQGSFQCTCANGYTLNTARDSCVDIDECARHP--NICNN-GTCVN-----A 922
IC NG F+C C G ++ + ++C + +EC + C G C+
Sbjct: 12 ICKNGQLVQMSNHFKCMCNEGL-VHLSENTCEEKNECKKETLGKACGEFGQCIENPDPAQ 70
Query: 923 IGSFKCHCYAGFKLSHNNDCI------GNCTDINEC--ESPQACLYGNCTNTLG------ 968
+ +KC C G+ L + C+ NC + EC E C+ +G
Sbjct: 71 VNMYKCGCIEGYTLKEDT-CVLDVCQYKNCGESGECIVEYLSEIQSAGCSCAIGKVPNPE 129
Query: 969 --SNCTDINECESPQACLYGN--CTNTLGSFSCTCPPNYQLTPAGNACV 1013
CT E C N C N G + C C + N C+
Sbjct: 130 DEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTFDKEKNVCL 178
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 753 LCPEG-VGRGDKGEDLNECALMPSAC----QGGECINTDGSYRC-ECPAGY 797
CP G +G G EDL+ECAL+P C + C+NT + C CP Y
Sbjct: 29 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRY 79
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 231 CRYINECEEMPEICGSGT----CENNIGSFSCR-----------CEDGYSVKPAEGPACT 275
C ++EC +P+IC S + C N F C G E C
Sbjct: 41 CEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE 100
Query: 276 DENECTMRTHNCDDNADCI 294
EN C +THNC +A+CI
Sbjct: 101 PENPCKDKTHNCHKHAECI 119
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 256 FSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSI 315
S C DGY+++ + C + +T CD+ A +NP GTR
Sbjct: 102 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTR----------- 150
Query: 316 QRCGEGFCVNDVGTYHC 332
+ G + + D TYHC
Sbjct: 151 -KVGSQYRLEDSVTYHC 166
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 256 FSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSI 315
S C DGY+++ + C + +T CD+ A +NP GTR
Sbjct: 112 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTR----------- 160
Query: 316 QRCGEGFCVNDVGTYHC 332
+ G + + D TYHC
Sbjct: 161 -KVGSQYRLEDSVTYHC 176
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 256 FSCRCEDGYSVKPAEGPACTDENECTMRTHNCDDNADCINNPVNKTGTRCVDIDECATSI 315
S C DGY+++ + C + +T CD+ A +NP GTR
Sbjct: 93 ISFHCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTR----------- 141
Query: 316 QRCGEGFCVNDVGTYHC 332
+ G + + D TYHC
Sbjct: 142 -KVGSQYRLEDSVTYHC 157
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 722 CQNVMGSFICTCPPGYRLSPDKNSC 746
C N +G + C+CPP Y L D +C
Sbjct: 132 CNNFIGGYFCSCPPEYFLHDDMKNC 156
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 305 CVDIDECATSIQRCGEGFCVNDVGTYHCVCPDGYMLLPSGKEC 347
DI+EC + FC N +G Y C CP Y L K C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp
pdb|1KTQ|A Chain A, Dna Polymerase
Length = 543
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 79 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 138
Query: 454 FCYRSL 459
+ YR +
Sbjct: 139 WLYREV 144
>pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The
Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I
pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex
Wi Abasic Site
pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna
Pol In Complex With A Blunt-Ended Dna And Ddatp
pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Trapped 4'- Ethylated Dttp
pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Trapped 4'- Methylated Dttp
pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From
Thermus Aquaticus Processing C5 Modified Thymidines
pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From
Thermus Aquaticus Processing C5 Modified Thymidies
pdb|3RR7|A Chain A, Binary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site
pdb|3RR8|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddgtp
pdb|3RRG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddgtp
pdb|3RRH|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And A Ddttp
pdb|3T3F|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase Bound To An Abasic Site And Dnitp
pdb|4DF4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With 7-(N-(10- Hydroxydecanoyl)-Aminopentinyl)-7-Deaza-2
-Datp
pdb|4DF8|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Aminopentinyl-7- Deaza-2-Datp
pdb|4DFJ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With 5-(Aminopentinyl)- Dttp
pdb|4DFK|A Chain A, Large Fragment Of Dna Polymerase I From Thermus Aquaticus
In A Closed Ternary Complex With
5-(N-(10-Hydroxydecanoyl)-Aminopentinyl)-2-Dutp
pdb|4DFM|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In Ternary Complex With
5-(Aminopentinyl)-2-Dctp
pdb|4DFP|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aqauticus In A Ternary Complex With
7-(Aminopentinyl)-7- Deaza-Dgtp
pdb|3RTV|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With Natural PrimerTEMPLATE DNA
pdb|3SV3|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In A Closed Ternary Complex
With The Artificial Base Pair Dnam-D5sicstp
pdb|3SV4|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dt As Templating Nucleobase
pdb|3SYZ|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dnam As Templating Nucleobase
pdb|3SZ2|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus In An Open Binary Complex With
Dg As Templating Nucleobase
pdb|4DLG|A Chain A, Ternary Structure Of The Large Fragment Of Taq Dna
Polymerase
Length = 540
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 76 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 135
Query: 454 FCYRSL 459
+ YR +
Sbjct: 136 WLYREV 141
>pdb|1QTM|A Chain A, Ddttp-trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 76 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 135
Query: 454 FCYRSL 459
+ YR +
Sbjct: 136 WLYREV 141
>pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus
Length = 538
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 74 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 133
Query: 454 FCYRSL 459
+ YR +
Sbjct: 134 WLYREV 139
>pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 76 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 135
Query: 454 FCYRSL 459
+ YR +
Sbjct: 136 WLYREV 141
>pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I
From T. Aquaticus Bound To A PrimerTEMPLATE DNA
Length = 539
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 75 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 134
Query: 454 FCYRSL 459
+ YR +
Sbjct: 135 WLYREV 140
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 877 CANFQGSFQCTCANGYTLNTARDSCVDIDECA 908
C Q S+ C+CA GY L CV D+CA
Sbjct: 17 CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 48
>pdb|3PO4|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In Complex With A
Blunt-Ended Dna And Ddatp
pdb|3PO5|A Chain A, Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Auqaticus In Complex With An
Abasic Site And Ddatp
pdb|3PY8|A Chain A, Crystal Structure Of A Mutant Of The Large Fragment Of Dna
Polymerase I From Thermus Aquaticus In A Closed Ternary
Complex With Dna And Ddctp
Length = 540
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 76 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 135
Query: 454 FCYRSL 459
+ YR +
Sbjct: 136 WLYREV 141
>pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase
Length = 832
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%)
Query: 394 PPGSRDYILLCGKDFAKLCPEGVGRGDKGEDLNECRTVITVRDSYFTEQWRDAKKNQRLG 453
PPG +L D + PEGV R GE E + + F W + +RL
Sbjct: 368 PPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLL 427
Query: 454 FCYRSL 459
+ YR +
Sbjct: 428 WLYREV 433
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 706 RPNSATREGICPSPGKCQ---NVMGSFICTCPPGYRLSPDKNSCQEDFAKLCPEGVGRGD 762
R + + G C PG C+ G + C P C E + LC G
Sbjct: 69 RQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIP--HPGCVHGICNEPWQCLCETNWGGQL 126
Query: 763 KGEDLNECALMPSACQGGECINTD-GSYRCECPAGY 797
+DLN C GG C NT Y+C CP GY
Sbjct: 127 CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,619,868
Number of Sequences: 62578
Number of extensions: 1494044
Number of successful extensions: 3735
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2386
Number of HSP's gapped (non-prelim): 1069
length of query: 1050
length of database: 14,973,337
effective HSP length: 109
effective length of query: 941
effective length of database: 8,152,335
effective search space: 7671347235
effective search space used: 7671347235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)